1. Targeted proteomics as a tool to detect SARS-CoV-2 proteins in clinical specimens
- Author
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Peter C. Wever, Jeroen Demmers, Karel Bezstarosti, Jeroen J. A. van Kampen, Wouter A S Doff, Bart L. Haagmans, Mart M. Lamers, Khoa T D Thai, Biochemistry, and Virology
- Subjects
RNA viruses ,Proteomics ,Viral Diseases ,Proteome ,Coronaviruses ,Physiology ,Proteomes ,viruses ,Biochemistry ,Nucleocapsids ,Mass Spectrometry ,Analytical Chemistry ,Medical Conditions ,Spectrum Analysis Techniques ,Liquid chromatography–mass spectrometry ,Chlorocebus aethiops ,Pathology and laboratory medicine ,Virus Testing ,Liquid Chromatography ,Multidisciplinary ,Chromatographic Techniques ,virus diseases ,Medical microbiology ,Body Fluids ,Chemistry ,Targeted proteomics ,Infectious Diseases ,Viruses ,Physical Sciences ,Medicine ,SARS CoV 2 ,Pathogens ,Anatomy ,medicine.symptom ,Research Article ,SARS coronavirus ,Coronavirus disease 2019 (COVID-19) ,Liquid Chromatography-Mass Spectrometry ,Science ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Viral Structure ,Biology ,Research and Analysis Methods ,Mass spectrometry ,Microbiology ,Viral Proteins ,Diagnostic Medicine ,Virology ,medicine ,Animals ,Humans ,Nucleocapsid ,Vero Cells ,Medicine and health sciences ,Detection limit ,Biology and life sciences ,SARS-CoV-2 ,Organisms ,Viral pathogens ,Sputum ,Proteins ,COVID-19 ,Covid 19 ,Phosphoproteins ,Molecular biology ,Microbial pathogens ,Mucus ,Targeted mass spectrometry ,Vero cell - Abstract
The rapid, sensitive and specific detection of SARS-CoV-2 is critical in responding to the current COVID-19 outbreak. In this proof-of-concept study, we explored the potential of targeted mass spectrometry based (MS) proteomics for the detection of SARS-CoV-2 proteins in both research samples and clinical specimens. First, we assessed the limit of detection for several SARS-CoV-2 proteins by parallel reaction monitoring (PRM) MS in infected Vero E6 cells. For tryptic peptides of Nucleocapsid protein, the limit of detection was in the mid-attomole range (9E-13 g). Next, this PRM methodology was applied to the detection of viral proteins in various COVID-19 patient clinical specimens, such as sputum and nasopharyngeal swabs. SARS-CoV-2 proteins were detected in these samples with high sensitivity in all specimens with PCR Ct values
- Published
- 2021