48 results on '"Álvaro Otero"'
Search Results
2. Validez pronóstica de las amplitudes de presión, tiempo en alcanzar la meseta y la pendiente obtenidas en el test de infusión para el estudio de la hidrocefalia idiopática de presión normal
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Daniel Ángel Arandia Guzmán, Pablo Sousa Casasnovas, Álvaro Otero Rodríguez, Luis Torres Carretero, Andoni García Martín, Juan Carlos Roa Montes de Oca, and Alejandra Garrido Ruiz
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03 medical and health sciences ,0302 clinical medicine ,business.industry ,Medicine ,Surgery ,Neurology (clinical) ,business ,Humanities ,030217 neurology & neurosurgery - Abstract
Resumen Antecedentes y objetivo Estudiar la validez pronostica de la resistencia a la salida de liquido cefalorraquideo (Rout) obtenida en el test de infusion lumbar en el estudio de la hidrocefalia idiopatica de presion normal (iNPH), al igual que de las amplitudes en los diferentes tramos del test y otras nuevas variables obtenidas con el software Neuropicture®. Materiales y metodos Revisamos retrospectivamente pacientes con «probable iNPH» a los que se les sometio a un test de infusion lumbar. Se determino el valor predictivo positivo (VPP) del punto de corte con mayor precision pronostica de la Rout, la amplitud de pulso en reposo (AMP0), la amplitud en los primeros 10 min (AMP10min), la amplitud de meseta (AMPmes), la amplitud de Rout (AMPRout), el tiempo en alcanzar la meseta (T) y la pendiente de la curva hasta alcanzar la meseta (P). Se dividio a los pacientes en respondedores y no respondedores. Resultados El estudio incluyo a 64 pacientes respondedores y 16, no respondedores. El VPP de Rout > 15 mmHg/ml/min fue 91,7%; de la AMP0 > 2,34 mmHg, 91,3%; de la AMP10min > 4,34 mmHG, 83,3%; de AMPmes > 12,44 mmHg, 84,6%; de AMPRout > 6,34 mmHG, 85%; de T 0,040 mmHg/s, 96,3%. Conclusiones La Rout sigue siendo un criterio valido para indicar un shunt ventricular. Las amplitudes en diferentes tramos del test, junto a la T y la P son otras variables cuya positividad es indicativa de respuesta valvular y deberian formar parte del protocolo diagnostico.
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- 2022
3. Legends supplementary Figures 1-6 from Exome Sequencing of Plasma DNA Portrays the Mutation Landscape of Colorectal Cancer and Discovers Mutated VEGFR2 Receptors as Modulators of Antiangiogenic Therapies
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Manuel Hidalgo, Jorge L. Martínez-Torrecuadrada, Orlando Domínguez, Antonio Cubillo, Carmen Blanco-Aparicio, Daniel Lietha, Alba De Martino, Rafael Álvarez, Sofia Perea, Tania Sanchez-Perez, Marta Camacho-Artacho, Francesca Sarno, Victoria Bonilla, Yolanda Durán, Natalia Baños, Maria I. Albarran, Álvaro Otero, Estela Vega, Jorge Monsech, Tirso Pons, Maria Mitsi, Elena Garralda, and Rodrigo A. Toledo
- Abstract
Legends for Supplementary Figures 1-6
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- 2023
4. Table S3 from Exome Sequencing of Plasma DNA Portrays the Mutation Landscape of Colorectal Cancer and Discovers Mutated VEGFR2 Receptors as Modulators of Antiangiogenic Therapies
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Manuel Hidalgo, Jorge L. Martínez-Torrecuadrada, Orlando Domínguez, Antonio Cubillo, Carmen Blanco-Aparicio, Daniel Lietha, Alba De Martino, Rafael Álvarez, Sofia Perea, Tania Sanchez-Perez, Marta Camacho-Artacho, Francesca Sarno, Victoria Bonilla, Yolanda Durán, Natalia Baños, Maria I. Albarran, Álvaro Otero, Estela Vega, Jorge Monsech, Tirso Pons, Maria Mitsi, Elena Garralda, and Rodrigo A. Toledo
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Table S3: Treatment regimens of the Avatar patient derived xenograft models carrying the VEGFR2 WT and L840F genotypes.
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- 2023
5. Figure S2 from Exome Sequencing of Plasma DNA Portrays the Mutation Landscape of Colorectal Cancer and Discovers Mutated VEGFR2 Receptors as Modulators of Antiangiogenic Therapies
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Manuel Hidalgo, Jorge L. Martínez-Torrecuadrada, Orlando Domínguez, Antonio Cubillo, Carmen Blanco-Aparicio, Daniel Lietha, Alba De Martino, Rafael Álvarez, Sofia Perea, Tania Sanchez-Perez, Marta Camacho-Artacho, Francesca Sarno, Victoria Bonilla, Yolanda Durán, Natalia Baños, Maria I. Albarran, Álvaro Otero, Estela Vega, Jorge Monsech, Tirso Pons, Maria Mitsi, Elena Garralda, and Rodrigo A. Toledo
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Figure S2: Read alignments from WES-cfDNA, showing somatic mutations in APC and TP53 genes.
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- 2023
6. Table S4 from Exome Sequencing of Plasma DNA Portrays the Mutation Landscape of Colorectal Cancer and Discovers Mutated VEGFR2 Receptors as Modulators of Antiangiogenic Therapies
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Manuel Hidalgo, Jorge L. Martínez-Torrecuadrada, Orlando Domínguez, Antonio Cubillo, Carmen Blanco-Aparicio, Daniel Lietha, Alba De Martino, Rafael Álvarez, Sofia Perea, Tania Sanchez-Perez, Marta Camacho-Artacho, Francesca Sarno, Victoria Bonilla, Yolanda Durán, Natalia Baños, Maria I. Albarran, Álvaro Otero, Estela Vega, Jorge Monsech, Tirso Pons, Maria Mitsi, Elena Garralda, and Rodrigo A. Toledo
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Table S4: Primers used for site-directed mutagenesis. The mutated nucleotides are indicated in bold and underlined in each mutant.
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- 2023
7. Table S2 from Exome Sequencing of Plasma DNA Portrays the Mutation Landscape of Colorectal Cancer and Discovers Mutated VEGFR2 Receptors as Modulators of Antiangiogenic Therapies
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Manuel Hidalgo, Jorge L. Martínez-Torrecuadrada, Orlando Domínguez, Antonio Cubillo, Carmen Blanco-Aparicio, Daniel Lietha, Alba De Martino, Rafael Álvarez, Sofia Perea, Tania Sanchez-Perez, Marta Camacho-Artacho, Francesca Sarno, Victoria Bonilla, Yolanda Durán, Natalia Baños, Maria I. Albarran, Álvaro Otero, Estela Vega, Jorge Monsech, Tirso Pons, Maria Mitsi, Elena Garralda, and Rodrigo A. Toledo
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Table S2: Custom primers and probes designed based on the Thermofisher online design tool for TaqManÃ,® genotyping assay for KDR c.2518C>T (VEGFR2 p.L840L). TaqManÃ,® MGB (minor groove binder) probes incorporate a 5' reporter (VIC or FAM) and a 3' nonfluorescent quencher (NFQ).
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- 2023
8. Online Methods from Exome Sequencing of Plasma DNA Portrays the Mutation Landscape of Colorectal Cancer and Discovers Mutated VEGFR2 Receptors as Modulators of Antiangiogenic Therapies
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Manuel Hidalgo, Jorge L. Martínez-Torrecuadrada, Orlando Domínguez, Antonio Cubillo, Carmen Blanco-Aparicio, Daniel Lietha, Alba De Martino, Rafael Álvarez, Sofia Perea, Tania Sanchez-Perez, Marta Camacho-Artacho, Francesca Sarno, Victoria Bonilla, Yolanda Durán, Natalia Baños, Maria I. Albarran, Álvaro Otero, Estela Vega, Jorge Monsech, Tirso Pons, Maria Mitsi, Elena Garralda, and Rodrigo A. Toledo
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Detailed methods
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- 2023
9. Figure S4 from Exome Sequencing of Plasma DNA Portrays the Mutation Landscape of Colorectal Cancer and Discovers Mutated VEGFR2 Receptors as Modulators of Antiangiogenic Therapies
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Manuel Hidalgo, Jorge L. Martínez-Torrecuadrada, Orlando Domínguez, Antonio Cubillo, Carmen Blanco-Aparicio, Daniel Lietha, Alba De Martino, Rafael Álvarez, Sofia Perea, Tania Sanchez-Perez, Marta Camacho-Artacho, Francesca Sarno, Victoria Bonilla, Yolanda Durán, Natalia Baños, Maria I. Albarran, Álvaro Otero, Estela Vega, Jorge Monsech, Tirso Pons, Maria Mitsi, Elena Garralda, and Rodrigo A. Toledo
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Figure S4: A) Molecular dynamics simulations with L840F VEGFR2 indicates that most of the adopted F840 conformations during the simulation are not compatible with inhibitor binding. Clashes between VEGFR2 and the sorafenib area are shown as red discs. B) Kinase assays showing impaired kinase activities of VEGFR2 L840F and R1032Q compared to wild-type. C) Effects of the L840F mutation on Y1175 VEGFR2 phosphorylation. HEK293 cells were transiently transfected with increasing levels of a plasmid encoding for WT or L840F VEGFR2. Cells at 70% confluence were starved in 1% BSA/DMEM for 4 h, and then incubated in the absence or presence of 60 ng/ml VEGF165 for 10 min at 37 {degree sign}C. Whole cell lysates were analyzed by western blotting, using antibodies against phosphoY1175 and total VEGFR2. Representative results are shown. D) PAE cells stably expressing WT or L840F VEGFR2 were generated from a PAE cell line that does not normally express VEGFR2 (empty). Cells at 70% confluence were starved in 1% BSA/DMEM for 4h, and then incubated in the absence or presence of 60 ng/ml VEGF165 for 10 min at 37 {degree sign}C. Whole cell lysates were then analyzed by western blotting, using antibodies against phosphoY1175 and total VEGFR2. Representative results are shown, highlighting the significant decrease in VEGF-induced Y1175 VEGFR2 phosphorylation in the presence of the L840F mutation.
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- 2023
10. Figure S3 from Exome Sequencing of Plasma DNA Portrays the Mutation Landscape of Colorectal Cancer and Discovers Mutated VEGFR2 Receptors as Modulators of Antiangiogenic Therapies
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Manuel Hidalgo, Jorge L. Martínez-Torrecuadrada, Orlando Domínguez, Antonio Cubillo, Carmen Blanco-Aparicio, Daniel Lietha, Alba De Martino, Rafael Álvarez, Sofia Perea, Tania Sanchez-Perez, Marta Camacho-Artacho, Francesca Sarno, Victoria Bonilla, Yolanda Durán, Natalia Baños, Maria I. Albarran, Álvaro Otero, Estela Vega, Jorge Monsech, Tirso Pons, Maria Mitsi, Elena Garralda, and Rodrigo A. Toledo
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Figure S3: Analyses of interactions between tyrosine kinase receptors and kinase inhibitors, performed with LigProt.
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- 2023
11. Figure S1 from Exome Sequencing of Plasma DNA Portrays the Mutation Landscape of Colorectal Cancer and Discovers Mutated VEGFR2 Receptors as Modulators of Antiangiogenic Therapies
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Manuel Hidalgo, Jorge L. Martínez-Torrecuadrada, Orlando Domínguez, Antonio Cubillo, Carmen Blanco-Aparicio, Daniel Lietha, Alba De Martino, Rafael Álvarez, Sofia Perea, Tania Sanchez-Perez, Marta Camacho-Artacho, Francesca Sarno, Victoria Bonilla, Yolanda Durán, Natalia Baños, Maria I. Albarran, Álvaro Otero, Estela Vega, Jorge Monsech, Tirso Pons, Maria Mitsi, Elena Garralda, and Rodrigo A. Toledo
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Figure S1: Read alignments from WES-cfDNA, showing somatic mutations in APC and TP53 genes.
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- 2023
12. Figure S5 from Exome Sequencing of Plasma DNA Portrays the Mutation Landscape of Colorectal Cancer and Discovers Mutated VEGFR2 Receptors as Modulators of Antiangiogenic Therapies
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Manuel Hidalgo, Jorge L. Martínez-Torrecuadrada, Orlando Domínguez, Antonio Cubillo, Carmen Blanco-Aparicio, Daniel Lietha, Alba De Martino, Rafael Álvarez, Sofia Perea, Tania Sanchez-Perez, Marta Camacho-Artacho, Francesca Sarno, Victoria Bonilla, Yolanda Durán, Natalia Baños, Maria I. Albarran, Álvaro Otero, Estela Vega, Jorge Monsech, Tirso Pons, Maria Mitsi, Elena Garralda, and Rodrigo A. Toledo
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Figure S5: A) Levels of phosphorylated ERK following treatment of the MDST8 colorectal cell line, expressing R1032Q VEGFR2, with different kinase inhibitors in the presence. B) Proliferation assays of Colo320 cell lines, stably expressing WT and R1032Q VEGFR2, upon treatment with TKIs. The expression of the VEGFR2 R1032Q hot-spot mutant in Colo320 cell lines (WT to KRAS/NRAS/BRAF/PIK3CA and mutated to TP53 and APC) increased sensitivity to cabozantinib.
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- 2023
13. Figure S6 from Exome Sequencing of Plasma DNA Portrays the Mutation Landscape of Colorectal Cancer and Discovers Mutated VEGFR2 Receptors as Modulators of Antiangiogenic Therapies
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Manuel Hidalgo, Jorge L. Martínez-Torrecuadrada, Orlando Domínguez, Antonio Cubillo, Carmen Blanco-Aparicio, Daniel Lietha, Alba De Martino, Rafael Álvarez, Sofia Perea, Tania Sanchez-Perez, Marta Camacho-Artacho, Francesca Sarno, Victoria Bonilla, Yolanda Durán, Natalia Baños, Maria I. Albarran, Álvaro Otero, Estela Vega, Jorge Monsech, Tirso Pons, Maria Mitsi, Elena Garralda, and Rodrigo A. Toledo
- Abstract
Figure S6: Assessment of the expression of phosphorylated ERK (p-ERK) in the WT and L840F VEGFR2 PDX Avatar models by immunohistochemistry (A), confocal microscopy (B), and immunoblotting (C). The MAPK pathway was activated in the L840F VEGFR2 mutant model and was not decreased following treatment with TKIs.
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- 2023
14. Table S5 from Exome Sequencing of Plasma DNA Portrays the Mutation Landscape of Colorectal Cancer and Discovers Mutated VEGFR2 Receptors as Modulators of Antiangiogenic Therapies
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Manuel Hidalgo, Jorge L. Martínez-Torrecuadrada, Orlando Domínguez, Antonio Cubillo, Carmen Blanco-Aparicio, Daniel Lietha, Alba De Martino, Rafael Álvarez, Sofia Perea, Tania Sanchez-Perez, Marta Camacho-Artacho, Francesca Sarno, Victoria Bonilla, Yolanda Durán, Natalia Baños, Maria I. Albarran, Álvaro Otero, Estela Vega, Jorge Monsech, Tirso Pons, Maria Mitsi, Elena Garralda, and Rodrigo A. Toledo
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Table S5: List of KDR/VEGFR2 somatic mutations from the Cosmic, TCGA, GENIE and PCA-WGS databases.
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- 2023
15. Utilidad de la monitorización neurofisiológica intraoperatoria como valor pronóstico de la parálisis facial posquirúrgica en schwannomas vestibulares
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Luis Torres-Carretero, Álvaro Otero-Rodríguez, María Victoria Alejos-Herrera, Gemma Vázquez-Casares, Andoni García-Martín, and Patricia Alejandra Garrido-Ruiz
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Surgery ,Neurology (clinical) ,General Medicine - Published
- 2023
16. Clinical, histopathologic and genetic features of rhabdoid meningiomas
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Patricia Alejandra Garrido Ruiz, María González-Tablas, Alejandro Pasco Peña, María Victoria Zelaya Huerta, Javier Ortiz, Álvaro Otero, Luis Antonio Corchete, María Dolores Ludeña, María Cristina Caballero Martínez, Alicia Córdoba Iturriagagoitia, Inmaculada Catalina Fernández, Joaquín González-Carreró Fojón, Aurelio Hernández Laín, Alberto Orfao, María Dolores Tabernero, Universidad Pública de Navarra. Departamento de Ciencias de la Salud, and Nafarroako Unibertsitate Publikoa. Osasun Zientziak Saila
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Chromosome copy number alterations ,Survival ,Organic Chemistry ,Histopathology ,General Medicine ,Rhabdoid meningioma ,Prognosis ,Catalysis ,Computer Science Applications ,Inorganic Chemistry ,rhabdoid meningioma ,chromosome copy number alterations ,diagnosis ,prognosis ,survival ,histopathology ,Diagnosis ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy - Abstract
Rhabdoid meningiomas (RM) shows heterogeneous histological findings, and a wide variety of chromosomal copy number alterations (CNA) are associated with an unpredictable course of the disease. In this study, we analyzed a series of 305 RM samples from patients previously reported in the literature and 33 samples from 23 patients studied in our laboratory. Monosomy 22-involving the minimal but most common recurrent region loss of the 22q11.23 chromosomal region was the most observed chromosomal alteration, followed by losses of chromosomes 14, 1, 6, and 19, polysomies of chromosomes 17, 1q, and 20, and gains of 13q14.2, 10p13, and 21q21.2 chromosomal regions. Based on their CNA profile, RM could be classified into two genetic subgroups with distinct clinicopathologic features characterized by the presence of (1) chromosomal losses only and (2) combined losses and gains of several chromosomes. The latter displays a higher frequency of WHO grade 3 tumors and poorer clinical outcomes. This research was funded by Consejería de Sanidad JCYL, Gerencia Regional de Salud, Spain grant numbers GRS 2132/A/20 and GRS 2315/A/21 and Instituto de Salud Carlos III, Ministerio de Economía y Competitividad, Madrid, Spain grant number CIBERONC CB16/12/00400.
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- 2023
17. The Role of RNA-Binding Proteins in Hematological Malignancies
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Pedro Aguilar-Garrido, Álvaro Otero-Sobrino, Miguel Ángel Navarro-Aguadero, María Velasco-Estévez, and Miguel Gallardo
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Leukemia ,RNA, Untranslated ,Lymphoma ,Organic Chemistry ,RNA-Binding Proteins ,General Medicine ,Catalysis ,Computer Science Applications ,Inorganic Chemistry ,Hematologic Neoplasms ,Humans ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy - Abstract
Hematological malignancies comprise a plethora of different neoplasms, such as leukemia, lymphoma, and myeloma, plus a myriad of dysplasia, such as myelodysplastic syndromes or anemias. Despite all the advances in patient care and the development of new therapies, some of these malignancies remain incurable, mainly due to resistance and refractoriness to treatment. Therefore, there is an unmet clinical need to identify new biomarkers and potential therapeutic targets that play a role in treatment resistance and contribute to the poor outcomes of these tumors. RNA-binding proteins (RBPs) are a diverse class of proteins that interact with transcripts and noncoding RNAs and are involved in every step of the post-transcriptional processing of transcripts. Dysregulation of RBPs has been associated with the development of hematological malignancies, making them potential valuable biomarkers and potential therapeutic targets. Although a number of dysregulated RBPs have been identified in hematological malignancies, there is a critical need to understand the biology underlying their contribution to pathology, such as the spatiotemporal context and molecular mechanisms involved. In this review, we emphasize the importance of deciphering the regulatory mechanisms of RBPs to pinpoint novel therapeutic targets that could drive or contribute to hematological malignancy biology.
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- 2022
18. An integrative analysis of yield stability for a GWAS in a small soybean breeding population
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Silvia Garaycochea, Schubert Fernández, Sergio Ceretta, Gastón Quero, Sebastián Simondi, Álvaro Otero, Victoria Bonnecarrère, and Omar Borsani
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education.field_of_study ,Agronomy ,Yield (finance) ,Population ,Genome-wide association study ,Biology ,education ,Agronomy and Crop Science ,Stability (probability) - Published
- 2021
19. miR-320c Regulates SERPINA1 Expression and Is Induced in Patients With Pulmonary Disease
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María Torres-Durán, Beatriz Lara, José Mª Hernández-Pérez, Sergio Cadenas, M. I. Martínez, Gema Gomez-Mariano, Marc Miravitlles, Francisco Casas, Esther Rodríguez, Nerea Matamala, Francisco Javier Michel, Lourdes Lázaro, Cristina Esquinas, Ana Bustamante, Silvia Castillo, Ines Herrero, Selene Martínez, Antonio Muñoz-Callejas, Ignacio Blanco, Irene Vázquez-Domínguez, Álvaro Otero-Sobrino, Sergio Curi, Elena Vanessa Martínez Sánchez, and Beatriz Martinez-Delgado
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Lung Diseases ,Pulmonary and Respiratory Medicine ,Inflammation ,Disease ,03 medical and health sciences ,Liver disease ,0302 clinical medicine ,alpha 1-Antitrypsin Deficiency ,microRNA ,medicine ,Humans ,3' Untranslated Regions ,Lung ,business.industry ,General Medicine ,medicine.disease ,MicroRNAs ,Real-time polymerase chain reaction ,medicine.anatomical_structure ,030228 respiratory system ,alpha 1-Antitrypsin ,Immunology ,Hepatic stellate cell ,Biomarker (medicine) ,medicine.symptom ,business - Abstract
INTRODUCTION: Alpha-1 antitrypsin deficiency (AATD) is a genetic condition resulting in lung and liver disease with a great clinical variability. MicroRNAs have been identified as disease modifiers; therefore miRNA deregulation could play an important role in disease heterogeneity. Members of miR-320 family are involved in regulating of multiple processes including inflammation, and have potential specific binding sites in the 3'UTR region of SERPINA1 gene. In this study we explore the involvement of miR-320c, a member of this family, in this disease. METHODS: Firstly in vitro studies were carried out to demonstrate regulation of SERPINA1 gene by miR-320. Furthermore, the expression of miR-320c was analyzed in the blood of 98 individuals with different AAT serum levels by using quantitative PCR and expression was correlated to clinical parameters of the patients. Finally, HL60 cells were used to analyze induction of miR-320c in inflammatory conditions. RESULTS: Overexpression of miR-320 members in human HepG2 cells led to inhibition of SERPINA1 expression. Analysis of miR-320c expression in patient's samples revealed significantly increased expression of miR-320c in individuals with pulmonary disease. Additionally, HL60 cells treated with the pro-inflammatory factor lipopolysaccharide (LPS) showed increase in miR-320c expression, suggesting that miR-320c responds to inflammation. CONCLUSION: Our findings demonstrate that miR-320c inhibits SERPINA1 expression in a hepatic cell line and its levels in blood are associated with lung disease in a cohort of patients with different AAT serum levels. These results suggest that miR-320c can play a role in AAT regulation and could be a biomarker of inflammatory processes in pulmonary diseases.
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- 2022
20. SARS-CoV-2 B.1.1.7 Decline Is Not Driven by the Introduction of a More Successful Variant
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Pilar Catalán, Luis Alcalá, Darío García de Viedma, Sergio Buenestado-Serrano, Víctor Manuel de la Cueva García, Carmen Losada, Cristina Rodríguez-Grande, Pedro J Sola-Campoy, Javier Adán-Jiménez, Patricia Muñoz, Laura Pérez-Lago, Álvaro Otero-Sobrino, Andrea Molero-Salinas, Carla Rico-Luna, and Jorge Rodríguez-Grande
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Microbiology (medical) ,Delta ,2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Physiology ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Zoology ,Alpha (ethology) ,Observation ,Biology ,variants of concern ,Microbiology ,Genetics ,Humans ,Phylogeny ,Whole Genome Sequencing ,General Immunology and Microbiology ,Ecology ,SARS-CoV-2 ,COVID-19 ,Genomics ,Cell Biology ,QR1-502 ,Infectious Diseases ,Spain ,Mutation - Abstract
The SARS-CoV-2 variant of concern (VOC) Delta (B.617.2 lineage) displaced the predominant VOC Alpha (B.1.1.7 lineage) in the United Kingdom. In Madrid, recent start of the decline of predominant VOC Alpha suggested an equivalent phenomenon. However, 11 different variants, none overrepresented in frequency, occupied progressively over a period of 7 weeks the niche previously dominated by VOC Alpha. Only after these 7 weeks, VOC Delta started to emerge. Viral competition due to the entry of VOC Delta is not the major force driving the start of VOC Alpha decline in Madrid. IMPORTANCE Our data indicate that the dynamics of SARS-CoV-2 VOCs turnover in our setting differ from those proposed for other countries. A systematic genomic analysis, updated on a weekly basis, of representative randomly selected samples of SARS-CoV-2 circulating variants allowed us to define a lapse of 7 weeks between the start of VOC Alpha decline and the final emergence of VOC Delta. During this period, VOC Alpha showed a sustained decline, while 11 VOCs, variants of interest (VOIs), and other identified variants, none overrepresented, occupied the niche left by VOC Alpha. Only after these 7 weeks, emergence of VOC Delta occurred, indicating that viral competition involving VOC Delta was not the exclusive direct driving force behind the starting of VOC Alpha decline.
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- 2021
21. Whole-Exome Sequencing Reveals Recurrent but Heterogeneous Mutational Profiles in Sporadic WHO Grade 1 Meningiomas
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María González-Tablas, Carlos Prieto, Daniel Arandia, María Jara-Acevedo, Álvaro Otero, Daniel Pascual, Laura Ruíz, Iván Álvarez-Twose, Andrés Celestino García-Montero, Alberto Orfao, and María Dolores Tabernero
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whole exome sequencing (WES) ,PTEN ,WHO grade 1 meningioma ,NF2 ,otorhinolaryngologic diseases ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,cytogenetics ,RC254-282 ,mutational profiles - Abstract
Human WHO grade 1 meningiomas are generally considered benign tumors; despite this, they account for ≈50% of all recurrent meningiomas. Currently, limited data exist about the mutational profiles of grade 1 meningiomas and patient outcome. We investigated the genetic variants present in 32 WHO grade 1 meningiomas using whole exome sequencing, and correlated gene mutational profiles with tumor cytogenetics and patient outcome. Overall, WHO grade 1 meningiomas harbored numerous and heterogeneous genetic variants, which most frequently affected the NF2 (47%) gene and to a less extent the PNMA6A (22%), TIGD1 (16%), SMO (13%), PTEN (13%), CREG2 (9%), EEF1A1 (6%), POLR2A (6%), ARID1B (3%), and FAIM3 (3%) genes. Notably, non-synonymous genetic variants of SMO and POLR2A were restricted to diploid meningiomas, whereas NF2 mutations were only found among tumors that showed -22/22q─ (with or without a complex karyotype). Based on NF2 mutations and tumor cytogenetics, four genetic profiles were defined with an impact on patient recurrence-free survival (RFS). These included (1) two good-prognosis tumor subgroups—diploid meningiomas (n=9) and isolated -22/22q─ associated with NF2 mutation (n=7)—with RFS rates at 10 y of 100%; and (2) two subgroups of poor-prognosis meningiomas—isolated -22/22q─ without NF2 mutation (n=3) and tumors with complex karyotypes (n=11)—with a RFS rate at 10 y of 48% (p=0.003). Our results point out the existence of recurrent but heterogeneous mutational profiles in WHO grade 1 meningiomas which have an impact on patient outcome.
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- 2021
22. Effects of Introducing Rest Intervals in Functional Fitness Training
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José Luis Maté-Muñoz, Manuel Vicente Garnacho-Castaño, María del Carmen Lozano-Estevan, Ana María Cañuelo-Márquez, Juan Hernández-Lougedo, Fernando de Jesús-Franco, Eduardo Cimadevilla-Pola, Jesús Guodemar-Pérez, Álvaro Otero-Campos, Pablo García-Fernández, and Tomás Fernández-Rodríguez
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Functional training ,medicine.medical_specialty ,Technology ,QH301-705.5 ,QC1-999 ,Perceived exertion ,muscular fatigue ,medicine.disease_cause ,high-intensity training ,Jumping ,Rest (finance) ,Heart rate ,Blood lactate ,Medicine ,Scopus ,General Materials Science ,Biology (General) ,rate of perceived exertion ,Instrumentation ,QD1-999 ,Fisioterapia ,Fluid Flow and Transfer Processes ,countermovement jump ,lactate ,business.industry ,Process Chemistry and Technology ,High intensity ,Physics ,General Engineering ,Engineering (General). Civil engineering (General) ,Computer Science Applications ,Chemistry ,JCR ,Physical therapy ,Countermovement jump ,TA1-2040 ,business - Abstract
Background: Functional Fitness Training (FFT) is a new exercise modality prioritizing functional multi-joint movements executed at high intensity as a circuit. Objective: To examine the impacts of introducing rest intervals in a FFT workout compared to “rounds for time” (RFT) FFT. Materials and Methods: Participants were 25 resistance-trained adults who completed two FFT workouts 1 week apart. The study design was crossover such that in a given session half the participants completed the standard and the other half the adapted FFT (FFTadapted). The workouts consisted of the same exercises (circuit of four rounds of exercises), but one (FFTadapted) included preset rest intervals (three sets of 1 min after each completed round). Before and after the workouts, countermovement jump ability and blood lactate were measured. Heart rate (HR) and ratings of perceived exertion (RPE) were measured post-exercise. Results: For both the standard and adapted protocols, mean HR was 90% age-predicted maximum. Final RPE was also similar for both workouts (~15–15.5) and indicated a “hard” work intensity. Both FFTs took the same time to complete (~13 min). Furthermore, no significant differences were observed in jump ability between FFTs. In contrast, lactate (15.11 ± 3.64 vs. 13.48 ± 3.64 mmol·L−1, p <, 0.05), measured 3 min post-exercise, was significantly lower in FFTadapted. Conclusions: In FFTadapted, there was a significant reduction in RPE and blood lactate concentrations after exercise, while there were no significant differences in either HR or jumping ability, compared to a FFT workout in RFT methodology.
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- 2021
23. Shared Mutations in Emerging SARS-CoV-2 Circulating Variants May Lead to Reverse Transcription-PCR (RT-PCR)-Based Misidentification of B.1.351 and P.1 Variants of Concern
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Darío García de Viedma, Laura Pérez-Lago, Carla Rico-Luna, Ana Candela, Pilar Catalán, Álvaro Otero-Sobrino, Patricia Muñoz, Andrea Molero-Salinas, Carmen Losada, and Sergio Buenestado-Serrano
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Microbiology (medical) ,2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Physiology ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,RT-PCR ,Observation ,Genome, Viral ,Biology ,Microbiology ,reverse transcriptase PCR ,Genetics ,Humans ,Diagnostic Errors ,Whole genome sequencing ,General Immunology and Microbiology ,Ecology ,Whole Genome Sequencing ,Reverse Transcriptase Polymerase Chain Reaction ,SARS-CoV-2 ,VOC ,COVID-19 ,Cell Biology ,QR1-502 ,Reverse transcription polymerase chain reaction ,Infectious Diseases ,Real-time polymerase chain reaction ,whole-genome sequencing ,COVID-19 Nucleic Acid Testing ,Spike Glycoprotein, Coronavirus ,WGS - Abstract
Reverse transcription-PCRs (RT-PCRs) targeting SARS-CoV-2 variant of concern (VOC) mutations have been developed to simplify their tracking. We evaluated an assay targeting E484K/N501Y to identify B.1.351/P1. Whole-genome sequencing (WGS) confirmed only 72 (59.02%) of 122 consecutive RT-PCR P.1/B.1.351 candidates. Prescreening RT-PCRs must target a wider set of mutations, updated from WGS data from emerging variants.
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- 2021
24. Patients awaiting surgery for neurosurgical diseases during the first wave of the COVID-19 pandemic in Spain: a multicentre cohort study
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Ana M Castaño-Leon, Igor Paredes, Alfonso Lagares, Pedro A Gomez, Pedro González-Leon, Angel Perez-Nuñez, Luis Jiménez-Roldán, Juan Delgado-Fernández, Carla Eiriz Fernández, Daniel García-Pérez, Luis M Moreno-Gómez, Olga Esteban-Sinovas, Pedro D Delgado-López, Javier Martín-Alonso, Ariel Kaen, Jorge Tirado-Caballero, Marta Ordóñez-Carmona, Francisco Arteaga-Romero, Marta González-Pombo, José F Alén, Ricardo Gil-Simoes, Cristina V Torres, Marta Navas-García, Guillermo Blasco García de Andoain, Natalia Frade-Porto, Patricia González-Tarno, Adrian Martin Segura, Miguel Gelabert-González, Beatriz Menéndez-Cortezón, Brais Rodríguez-Botana, Rebeca Pérez-Alfayate, Carla Fernández-García, Borja Ferrández-Pujante, Andres C Vargas-Jiménez, Carlos Cotúa, Adolfo de la Lama, Lourdes Calero Félix, Fernando Ruiz-Juretschke, Roberto García-Leal, Marc Valera-Melé, Vicente Casitas Hernando, Belén Rivero, Javier Orduna-Martínez, Juan Casado Pellejero, David Fustero De Miguel, Jorge Díaz Molina, Jesús Moles Herbera, Maria J Castelló-Ruiz, Mario Gomar-Alba, Fernando García-Pérez, Borja J Hernández-García, Jorge J Villaseñor-Ledezma, Álvaro Otero-Rodríguez, Juan J Ailagas de las Heras, Jesus Gonçalves-Estella, Pablo Sousa-Casasnovas, Daniel Pascual-Argente, Laura Ruiz Martín, Juan C Roa Montes de Oca, Daniel Arandia Guzmán, Andoni García Martín, Luis Torres Carretero, Alejandra Garrido Ruiz, Marta Calvo, Pablo Miranda-Lloret, Miguel Rodríguez-Cadarso, Joan Antón, Amparo Roca Barber, Arnold Quiroz-Tejada, Guillermo Carbayo-Lozano, Garazi Bermúdez, Clara Paternain Martin, Pablo De la Fuente Villa, Marina Fidalgo De la Rosa, Íñigo L Sistiaga-Gracia, and Gorka Zabalo
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Paediatric neurosurgery ,SARS-CoV-2 ,Spain ,Neurosurgery ,COVID-19 ,Humans ,General Medicine ,PUBLIC HEALTH ,Adult surgery ,Pandemics ,Neurosurgical Procedures ,Retrospective Studies - Abstract
ObjectivesThe large number of infected patients requiring mechanical ventilation has led to the postponement of scheduled neurosurgical procedures during the first wave of the COVID-19 pandemic. The aims of this study were to investigate the factors that influence the decision to postpone scheduled neurosurgical procedures and to evaluate the effect of the restriction in scheduled surgery adopted to deal with the first outbreak of the COVID-19 pandemic in Spain on the outcome of patients awaiting surgery.DesignThis was an observational retrospective study.SettingsA tertiary-level multicentre study of neurosurgery activity between 1 March and 30 June 2020.ParticipantsA total of 680 patients awaiting any scheduled neurosurgical procedure were enrolled. 470 patients (69.1%) were awaiting surgery because of spine degenerative disease, 86 patients (12.6%) due to functional disorders, 58 patients (8.5%) due to brain or spine tumours, 25 patients (3.7%) due to cerebrospinal fluid (CSF) disorders and 17 patients (2.5%) due to cerebrovascular disease.Primary and secondary outcome measuresThe primary outcome was mortality due to any reason and any deterioration of the specific neurosurgical condition. Second, we analysed the rate of confirmed SARS-CoV-2 infection.ResultsMore than one-quarter of patients experienced clinical or radiological deterioration. The rate of worsening was higher among patients with functional (39.5%) or CSF disorders (40%). Two patients died (0.4%) during the waiting period, both because of a concurrent disease. We performed a multivariate logistic regression analysis to determine independent covariates associated with maintaining the surgical indication. We found that community SARS-CoV-2 incidence (OR=1.011, pConclusionsPatients awaiting neurosurgery experienced significant collateral damage even when they were considered for scheduled procedures.
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- 2022
25. Avaliação do producto da evapotranspiração MODIS16A2 em três resoluções espaciais no Uruguai
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Rafael Navas, Guadalupe Tiscornia, Andrés G. Berger, and Álvaro Otero
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Eddy covariance ,Land cover ,Atmospheric sciences ,Water balance ,water balance ,eddy covariance flux ,Evapotranspiration ,medicine ,SWAT ,modis16a2 ,SWAT model ,balance de agua ,swat ,Agriculture ,Seasonality ,Albedo ,evapotranspiración por satélite ,medicine.disease ,balanço hídrico ,satellite evapotranspiration ,Environmental science ,Eddy Covariance flux ,Eddy Covariance ,Scale (map) ,detecção de evapotranspiração com satélite ,MODIS16A2 - Abstract
Evapotranspiration (ET) is a key process in hydrological systems and, consequently, in agroecosystems. It can be measured or derived with a large variety of models at scales ranging from leaf to catchment. MODIS16A2 is a satellite ET product with 500 meters / 8-day spatio-temporal resolution worldwide. It is based on the Penman-Monteith equation and considers the effect of vegetation dynamics, albedo and land cover. This technical paper compares the ET estimated from MODIS16A2 against the ET estimated at different scales from three reference methods: (1) the INIA-GRAS Water Balance on a country-scale, (2) the SWAT model of the Santa Lucia basin on the catchment scale, and (3) the Eddy Covariance Flux located in Colonia on a farmer scale. The analysis shows similarities between MODIS16A2 and the reference methods depending on seasonality, geographic location and scale of ET estimation. The assumptions about vegetation cover, vegetation dynamics, meteorological forcing and soil characteristics of the reference methods compared with MODIS16A2 ones could explain some deviations in the ET estimations. The results of this work contribute with a first approximation towards the quantification of the uncertainty of MODIS16A2 in Uruguay. Resumen: La evapotranspiración (ET) es un proceso clave en los sistemas hidrológicos y consecuentemente en los agroecosistemas. Puede ser medida o simulada con una gran variedad de modelos implementados a diferentes escalas que abarcan desde pequeñas escalas a nivel de la hoja de una planta, hasta escalas más grandes en una cuenca hidrográfica. El MODIS16A2 es un producto satelital que estima la ET. Tiene una resolución espaciotemporal de 500 metros y 8 días en todo el mundo. Se basa en la ecuación de Penman-Monteith y considera el efecto de la dinámica de la vegetación, el albedo y la cobertura del suelo. Esta nota técnica compara la estimación de la ET del MODIS16A2 con la ET estimada a diferentes escalas con tres métodos de referencia: (1) el Balance Hídrico INIA-GRAS a escala país; (2) el modelo SWAT de la cuenca Santa Lucía en la escala de cuenca, y (3) la Torre Eddy Covariance ubicada en Colonia a escala de chacra. La comparación muestra que la similitud del MODIS16A2 con estos métodos de referencia depende de la estacionalidad, la geolocalización de la estimación de ET, así como de la escala. Los supuestos sobre la cobertura vegetal, la dinámica de la vegetación, el forzamiento meteorológico y las características del suelo de los métodos de referencia en relación con los de MODIS16A2 podrían explicar algunas de las desviaciones en las estimaciones de ET. Los resultados de este trabajo contribuyen con una primera aproximación a la cuantificación de la incertidumbre de MODIS16A2 en Uruguay. Resumo: Evotranspiração (ET) é um processo chave nos sistemas hidrológicos. A mesma pode ser estimada utilizando medições indiretas ou simulada com uma grande variedade de modelos, que representam escala finas desde a folha de uma planta até escalas amplas em uma bacia hidrográfica. O MODIS16A2 é um produto de satélite que estima a ET. Apresenta uma resolução espaço-temporal de 500 metros e 8 dias no mundo inteiro. Está baseado na equação de Penman-Monteith e contempla o efeito da dinâmica da vegetação, o albedo e a cobertura do solo. Este documento técnico compara o modelo MODIS16A2 com três métodos de referência: (1) o balanço hídrico INIA-GRAS na escala país, (2) o modelo SWAT da bacia do Rio Santa Lucia na escala da bacia e (3) a Torre Eddy Covariance localizada em Colonia na escala de chacara. A comparação mostra que a similitude do modelo MODIS16A2 com os métodos de referência depende da estacionalidade e localização espacial da estimação de ET. O MODIS16A2 emprega diferentes suposições dos métodos de referência. Os pressupostos sobre cobertura vegetal, dinâmica da vegetação, variáveis meteorológicas e características do solo dos métodos de referência em relação aos do MODIS16A2, poderia explicar alguns dos desvios nas estimativas de ET. Os resultados deste trabalho contribuem com uma primeira aproximação na quantificação da incerteza do modelo MODIS16A2 no Uruguai.
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- 2021
26. Impact of the first wave of the SARS-CoV-2 pandemic on the outcome of neurosurgical patients: a nationwide study in Spain
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Igor Paredes, Ana Maria Castaño Leon, Alfonso Lagares, Luis Jimenez Roldan, Angel Perez-Nuñez, Pedro González-Leon, Juan Delgado-Fernandez, Carla Eiriz, Daniel García-Pérez, Luis Miguel Moreno-Gomez, Olga Esteban-Sinovas, Pedro Delgado-López, Javier Martín-Alonso, Ariel Kaen, Jorge Tirado-Caballero, Marta Ordóñez Carmona, Francisco Arteaga Romero, Marta Gonzalez Pombo, José F Alén, Ricardo Gil-Simoes, Cristina V Torres, Marta Navas Garcia, Guillermo Blasco, Natalia Frade-Porto, Patricia González-Tarno, Adrian Martin Segura, Miguel Gelabert-Gonzalez, Beatriz Menendez Cortezon, Brais Rodriguez Botana, Rebeca Pérez-Alfayate, Carla Fernandez Garcia, Borja Ferrandez Pujante, Andres Vargas-Jiménez, Carlos Cotúa, Adolfo de la Lama, Lourdes Calero, Fernando Ruiz-Juretschke, Roberto Garcia Leal, Marc Valera Mele, Vicente Casitas Hernando, Belén Rivero Martín, Javier Orduna, Juan Casado Pellejero, David Fustero De Miguel, Jorge Diaz-Molina, Jesus Moles Herbera, Maria Jose Castello Ruiz, Mario Gomar Alba, Fernando Garcia Perez, Borja Jesus Hernandez Garcia, Javier Villaseñor Ledezma, Álvaro Otero Rodríguez, Juan José Ailagas, Jesús Goncalves-Estella, Pablo Sousa Casasnovas, Daniel Pascual Argente, Laura Ruiz Martín, Juan Carlos Roa Montes de Oca, Daniel Arandia Guzmán, Andoni García Martín, Luis Torres Carretero, Patricia Alejandra Garrido Ruíz, Marta Calvo, Pablo Miranda-Lloret, Miguel Rodriguez-Cadarso Suarez-Vence, Joan Anotn Oltra, Amparo Roca Barber, Arnold Quiroz Tejada, Guillermo Carbayo Lozano, Garazi Bermudez Vilar, Clara Paternain Martin, Pablo Dela FuenteVilla, Marina Fidalgo De la Rosa, Íñigo L Sistiaga García, and Gorka Zabalo San Juan
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SARS-CoV-2 ,Spain ,COVID-19 ,Humans ,General Medicine ,adult surgery ,Pandemics ,neurological oncology ,Retrospective Studies ,neurological injury ,neurosurgery - Abstract
ObjectiveTo assess the effect of the first wave of the SARS-CoV-2 pandemic on the outcome of neurosurgical patients in Spain.SettingsThe initial flood of COVID-19 patients overwhelmed an unprepared healthcare system. Different measures were taken to deal with this overburden. The effect of these measures on neurosurgical patients, as well as the effect of COVID-19 itself, has not been thoroughly studied.ParticipantsThis was a multicentre, nationwide, observational retrospective study of patients who underwent any neurosurgical operation from March to July 2020.InterventionsAn exploratory factorial analysis was performed to select the most relevant variables of the sample.Primary and secondary outcome measuresUnivariate and multivariate analyses were performed to identify independent predictors of mortality and postoperative SARS-CoV-2 infection.ResultsSixteen hospitals registered 1677 operated patients. The overall mortality was 6.4%, and 2.9% (44 patients) suffered a perioperative SARS-CoV-2 infection. Of those infections, 24 were diagnosed postoperatively. Age (OR 1.05), perioperative SARS-CoV-2 infection (OR 4.7), community COVID-19 incidence (cases/105people/week) (OR 1.006), postoperative neurological worsening (OR 5.9), postoperative need for airway support (OR 5.38), ASA grade ≥3 (OR 2.5) and preoperative GCS 3–8 (OR 2.82) were independently associated with mortality. For SARS-CoV-2 postoperative infection, screening swab test 5people/week) (OR 1.011), preoperative cognitive impairment (OR 2.784), postoperative sepsis (OR 3.807) and an absence of postoperative complications (OR 0.188) were independently associated.ConclusionsPerioperative SARS-CoV-2 infection in neurosurgical patients was associated with an increase in mortality by almost fivefold. Community COVID-19 incidence (cases/105people/week) was a statistically independent predictor of mortality.Trial registration numberCEIM 20/217.
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- 2021
27. Prognostic value of the pulse pressure amplitudes, time to reach the plateau and the slope obtained in the lumbar infusion test for the study of idiophatic normal pressure hydrocephalus
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Juan Carlos Roa Montes de Oca, Pablo Sousa Casasnovas, Alejandra Garrido Ruiz, Daniel Ángel Arandia Guzmán, Andoni García Martín, Álvaro Otero Rodríguez, and Luis Torres Carretero
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medicine.medical_specialty ,Infusion test ,Intracranial Pressure ,business.industry ,Blood Pressure ,General Medicine ,medicine.disease ,Plateau (mathematics) ,Prognosis ,Adenosine Monophosphate ,Hydrocephalus, Normal Pressure ,Pulse pressure ,Amplitude ,Lumbar ,Cerebrospinal fluid ,Normal pressure hydrocephalus ,Internal medicine ,Cardiology ,Medicine ,Humans ,business ,Shunt (electrical) ,Retrospective Studies - Abstract
Background and objective To study the prognostic value of the resistance to the cerebrospinal fluid outflow (Rout) obtained in the lumbar infusion test in idiopathic normal pressure hydrocephalus (iNPH), as well as the pulse pressure amplitudes in the different periods of the test and other new variables extracted by Neuropicture® software. Material and methods Patients with ‘probable iNPH’ who underwent a lumbar infusion test were retrospectively revised. The positive predictive values (PPV) of the cutoff point of the best prognostic accuracy of the Rout, the basal pulse pressure amplitude (AMPo), the pulse pressure amplitude during the first 10 min (AMP10min), the plateau pulse pressure amplitude (AMPmes), the Rout pulse pressure amplitude (AMPRout), the time to reach the plateau (T), and the slope until reaching the plateau were determined. Patients were categorized either as responders or non-responders. Results The study included 64 responders patients and 16 non-responders patients. The PPV of Rout > 15 mmHg/mL/min was 91.7%; AMPo > 2.34 mmHg: 91.3%; AMP10 min > 4.34 mmHg: 83.3%; AMPmes > 12.44 mmHg: 84.6%; AMPRout > 6.34 mmHg: 85%; T 0.040 mmHg/s: 96.3%. Conclusions Rout is a valid criterion to indicate a ventricular shunt. Pulse pressure amplitudes in the different periods of the lumbar infusion test, in addition to T and P, are other variables whose positivity is indicative of shunt response and should be considered in the diagnostic protocol of the iNPH.
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- 2020
28. Tumor cell and immune cell profiles in primary human glioblastoma: Impact on patient outcome
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Javie Ortiz, Laura Ruíz Martín, Alberto Orfao, Luis Torres Carretero, Maria Almeida, María González-Tablas Pimenta, Daniel Ángel Arandia Guzmán, Juan Carlos Roa Montes de Oca, María Dolores Tabernero, Adelaida Nieto, Álvaro Otero, Andoni García-Martín, Pablo Sousa-Casasnovas, Javier Villaseñor-Ledezma, Daniel Pascual-Argente, Instituto de Salud Carlos III, Ministerio de Economía y Competitividad (España), European Commission, and Junta de Castilla y León
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0301 basic medicine ,Male ,lymphocytes ,Myeloid ,Neutrophils ,microglia ,0302 clinical medicine ,Tumor-Associated Macrophages ,Tumor Microenvironment ,IL-2 receptor ,Lymphocytes ,Research Articles ,CD20 ,Aged, 80 and over ,education.field_of_study ,biology ,Brain Neoplasms ,General Neuroscience ,Immune cells ,Middle Aged ,medicine.anatomical_structure ,myeloid cells ,Myeloid cells ,Female ,Microglia ,Research Article ,Adult ,Microenvironment ,CD3 ,Population ,CD19 ,Pathology and Forensic Medicine ,03 medical and health sciences ,Immune system ,Lymphocytes, Tumor-Infiltrating ,immune cells ,medicine ,Biomarkers, Tumor ,Humans ,education ,Aged ,business.industry ,Myeloid-Derived Suppressor Cells ,glioblastoma ,microenvironment ,030104 developmental biology ,Cancer research ,biology.protein ,Neurology (clinical) ,business ,Glioblastoma ,030217 neurology & neurosurgery ,CD8 - Abstract
© 2020 The Authors., The distribution and role of tumor-infiltrating leucocytes in glioblastoma (GBM) remain largely unknown. Here, we investigated the cellular composition of 55 primary (adult) GBM samples by flow cytometry and correlated the tumor immune profile with patient features at diagnosis and outcome. GBM single-cell suspensions were stained at diagnosis (n = 44) and recurrence following radiotherapy and chemotherapy (n = 11) with a panel of 8-color monoclonal antibody combinations for the identification and enumeration of (GFAPCD45) tumor and normal astrocytic cells, infiltrating myeloid cells —i.e. microglial and blood-derived tumor-associated macrophages (TAM), M1-like, and M2-like TAM, neutrophils. and myeloid-derived suppressor cells (MDSC)— and tumor-infiltrating lymphocytes (TIL) —i.e. CD3T-cells and their TCD4, TCD8, TCD4CD8, and (CD25CD127) regulatory (T-regs) subsets, (CD19CD20) B-cells, and (CD16) NK-cells—. Overall, GBM samples consisted of a major population (mean ± 1SD) of tumor and normal astrocytic cells (73% ± 16%) together with a significant but variable fraction of immune cells (24% ± 18%). Within myeloid cells, TAM predominated (13% ± 12%) including both microglial cells (10% ± 11%) and blood-derived macrophages (3% ± 5%), in addition to a smaller proportion of neutrophils (5% ± 9%) and MDSC (4% ± 8%). Lymphocytes were less represented and mostly included TCD4 (0.5% ± 0.7%) and TCD8 cells (0.6% ± 0.7%), together with lower numbers of TCD4CD8 T-cells (0.2% ± 0.4%), T-regs (0.1% ± 0.2%), B-lymphocytes (0.1% ± 0.2%) and NK-cells (0.05% ± 0.05%). Overall, three distinct immune profiles were identified: cases with a minor fraction of leucocytes, tumors with a predominance of TAM and neutrophils, and cases with mixed infiltration by TAM, neutrophils, and T-lymphocytes. Untreated GBM patients with mixed myeloid and lymphoid immune infiltrates showed a significantly shorter patient overall survival versus the other two groups, in the absence of gains of the EGFR gene (p = 0.02). Here we show that immune cell infiltrates are systematically present in GBM, with highly variable levels and immune profiles. Patients with mixed myeloid and T-lymphoid infiltrates showed a worse outcome., Instituto de Salud Carlos III, Ministerio de Economía y Competitividad, Madrid, Spain and fondos FEDER, Grant/Award Number: CB16/12/00400 and ISCIII PI16/0476; Consejería de Sanidad Junta de Castilla y León, Gerencia Regional de Salud, Spain, Grant/Award Number: GRS2049/A/19
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- 2020
29. Multivariate analysis reveals differentially expressed genes among distinct subtypes of diffuse astrocytic gliomas: diagnostic implications
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Ana Luísa Vital, Ana B. Nieto-Librero, Nerea González-García, Alberto Orfao, Hermínio Tão, Purificación Galindo-Villardón, María González-Tablas, María Tabernero, Álvaro Otero, Instituto de Salud Carlos III, Ministerio de Economía y Competitividad (España), European Commission, and Junta de Castilla y León
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Male ,Science ,Astrocytoma ,Biology ,Article ,CHI3L1 ,Medical research ,Genetics ,medicine ,Humans ,Gene ,Cancer ,Oligonucleotide Array Sequence Analysis ,Regulation of gene expression ,Multidisciplinary ,Brain Neoplasms ,Gene Expression Profiling ,Discriminant Analysis ,Middle Aged ,medicine.disease ,Computational biology and bioinformatics ,Gene Expression Regulation, Neoplastic ,Gene expression profiling ,Oncology ,Genetic marker ,Multivariate Analysis ,Mutation ,Linear Models ,Cancer research ,Medicine ,Female ,XIST ,DNA microarray ,Software ,Neuroscience ,Signal Transduction ,Anaplastic astrocytoma - Abstract
Diagnosis and classification of gliomas mostly relies on histopathology and a few genetic markers. Here we interrogated microarray gene expression profiles (GEP) of 268 diffuse astrocytic gliomas—33 diffuse astrocytomas (DA), 52 anaplastic astrocytomas (AA) and 183 primary glioblastoma (GBM)—based on multivariate analysis, to identify discriminatory GEP that might support precise histopathological tumor stratification, particularly among inconclusive cases with II–III grade diagnosed, which have different prognosis and treatment strategies. Microarrays based GEP was analyzed on 155 diffuse astrocytic gliomas (discovery cohort) and validated in another 113 tumors (validation set) via sequential univariate analysis (pairwise comparison) for discriminatory gene selection, followed by nonnegative matrix factorization and canonical biplot for identification of discriminatory GEP among the distinct histological tumor subtypes. GEP data analysis identified a set of 27 genes capable of differentiating among distinct subtypes of gliomas that might support current histological classification. DA + AA showed similar molecular profiles with only a few discriminatory genes overexpressed (FSTL5 and SFRP2) and underexpressed (XIST, TOP2A and SHOX2) in DA vs AA and GBM. Compared to DA + AA, GBM displayed underexpression of ETNPPL, SH3GL2, GABRG2, SPX, DPP10, GABRB2 and CNTN3 and overexpression of CHI3L1, IGFBP3, COL1A1 and VEGFA, among other differentially expressed genes., MG-T, AO and MDT were supported by the following Grants: CB16/12/00400 (CIBER-ONC, Instituto de Salud Carlos III, Ministerio de Economía y Competitividad, Madrid, Spain and FONDOS FEDER), ISCIII PI16/0476 (Instituto de Salud Carlos III, Ministerio de Economía y Competitividad, Madrid, Spain) and GRS2049/A/19 (Consejería de Sanidad Junta de Castilla y León, Gerencia Regional de Salud, Spain).
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- 2020
30. Heterogeneous EGFR, CDK4, MDM4, and PDGFRA gene expression profiles in primary GBM: No association with patient survival
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María Jara-Acevedo, María González-Tablas, Nerea González-García, Álvaro Otero, Ana B. Nieto-Librero, Daniel Pascual, Alberto Orfao, Carlos Prieto, María Dolores Tabernero, Laura Ruiz, Purificación Galindo-Villardón, Pablo Sousa, Hermínio Tão, Daniel Arandia, Ana-Luisa Vital, Instituto de Salud Carlos III, Ministerio de Economía y Competitividad (España), and European Commission
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0301 basic medicine ,Cancer Research ,Platelet-Derived Growth Factor Receptor Alpha ,PDGFRA ,amplification ,lcsh:RC254-282 ,Article ,03 medical and health sciences ,Exon ,0302 clinical medicine ,Intragenic deletions ,Gene expression ,medicine ,Epidermal growth factor receptor ,Gene ,Chromosome 7 (human) ,Polysomy ,biology ,glioblastoma ,Gene expression profile ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,030104 developmental biology ,intragenic deletions ,Oncology ,030220 oncology & carcinogenesis ,Cancer research ,biology.protein ,gene expression profile ,heterogeneity ,Heterogeneity ,Glioblastoma - Abstract
This article belongs to the Special Issue Brain Tumors., [Background]: The prognostic impact of the expression profile of genes recurrently amplified in glioblastoma multiforme (GBM) remains controversial., [Methods]: We investigated the RNA gene expression profile of epidermal growth factor receptor (EGFR), cyclin-dependent kinase 4 (CDK4), murine doble minute 4 (MDM4), and platelet derived growth factor receptor alpha (PDGFRA) in 83 primary GBM tumors vs. 42 normal brain tissue samples. Interphase FISH (iFISH) analysis for the four genes, together with analysis of intragenic deletions in EGFR and PDGFRA, were evaluated in parallel at the DNA level. As validation cohort, publicly available RNA gene expression data on 293 samples from 10 different GBM patient series were also studied., [Results]: At the RNA level, CDK4 was the most frequently overexpressed gene (90%) followed by EGFR (58%) and PDGFRA (58%). Chromosome 7 copy number alterations, i.e., trisomy (49%) and polysomy (44%), showed no clear association with EGFR gene expression levels. In turn, intragenic EGFR deletions were found in 39 patients (47%), including EGFRvIII (46%) in association with EGFRvIVa (4%), EGFRvII (2%) or other EGFR deletions (3%) and PDGFRA deletion of exons 8–9 was found in only two tumors (2%)., [Conclusions]: Overall, none of the gene expression profiles and/or intragenic EGFR deletions showed a significant impact on overall survival of GBM supporting the notion that other still unraveled features of the disease might play a more relevant prognostic role in GBM, This research was funded by Instituto de Salud Carlos III, Ministerio de Ciencia e Innovación and Ministerio de Economía y Competitividad (RD12/0036/0048, AES PI16/00476-FONDOS FEDER and CB16/12/00400).
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- 2020
31. Ultrasonographic Diagnosis of A2 or A4 Flexor Tendon Pulley Injury: A Systematic Review
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Ángel Oliva-Pascual-Vaca, Marc Blasi, Pablo Barceló-Galíndez, Álvaro Otero-Campos, Elena Sonsoles Rodríguez-López, Javier De la Fuente-Ortiz de Zarate, and Xeber Iruretagoiena-Urbieta
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medicine.medical_specialty ,business.product_category ,Flexor tendon ,business.industry ,Ultrasound ,Public Health, Environmental and Occupational Health ,030208 emergency & critical care medicine ,030229 sport sciences ,Pulley ,Fingers ,03 medical and health sciences ,0302 clinical medicine ,Complete rupture ,Tendon Injuries ,Finger Injuries ,Emergency Medicine ,medicine ,Tears ,Humans ,sense organs ,Radiology ,Ultrasonography ,business - Abstract
A2 or A4 annular finger pulley tears are common injuries in rock climbers. This study reviews the measurement procedures used and tendon-to-bone distance data obtained on high-resolution ultrasound images when diagnosing isolated rupture of the A2 or A4 pulleys. Out of 3447 records extracted, only 7 remained after applying the exclusion criteria. In diagnosing a complete rupture, tendon-to-bone distance used varied widely from 1.9 to 5.1 mm for A2 and from 1.8 to 3.1 mm for A4. Our findings point to a lack of consensus diagnostic criteria for pulley injuries and identify technical details needing further research.
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- 2019
32. Exome Sequencing of Plasma DNA Portrays the Mutation Landscape of Colorectal Cancer and Discovers Mutated VEGFR2 Receptors as Modulators of Antiangiogenic Therapies
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Maria Mitsi, Estela Vega, Yolanda Duran, Rafael Álvarez, Elena Garralda, María Isabel Albarrán, Sofia Perea, Antonio Cubillo, Manuel Hidalgo, Marta Camacho-Artacho, T. Sánchez-Pérez, Orlando Domínguez, Carmen Blanco-Aparicio, Álvaro Otero, Natalia Baños, Jorge Monsech, Alba de Martino, Jorge L. Martínez-Torrecuadrada, Tirso Pons, Francesca Sarno, Rodrigo A. Toledo, Victoria Bonilla, and Daniel Lietha
- Subjects
Vascular Endothelial Growth Factor A ,0301 basic medicine ,Cancer Research ,Class I Phosphatidylinositol 3-Kinases ,Protein Conformation ,Somatic cell ,Colorectal cancer ,Angiogenesis Inhibitors ,Biology ,medicine.disease_cause ,Germline ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Germline mutation ,Cell Line, Tumor ,Exome Sequencing ,Biomarkers, Tumor ,medicine ,Animals ,Humans ,Anaplastic Lymphoma Kinase ,Exome ,Proto-Oncogene Proteins c-abl ,Exome sequencing ,Cell Proliferation ,Mutation ,Neovascularization, Pathologic ,Kinase ,Cancer ,medicine.disease ,Vascular Endothelial Growth Factor Receptor-2 ,ErbB Receptors ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Cancer research ,Heterografts ,Female ,Colorectal Neoplasms ,Cell-Free Nucleic Acids - Abstract
Purpose: Despite the wide use of antiangiogenic drugs in the clinical setting, predictive biomarkers of response to these drugs are still unknown. Experimental Design: We applied whole-exome sequencing of matched germline and basal plasma cell-free DNA samples (WES-cfDNA) on a RAS/BRAF/PIK3CA wild-type metastatic colorectal cancer patient with primary resistance to standard treatment regimens, including inhibitors to the VEGF:VEGFR2 pathway. We performed extensive functional experiments, including ectopic expression of VEGFR2 mutants in different cell lines, kinase and drug sensitivity assays, and cell- and patient-derived xenografts. Results: WES-cfDNA yielded a 77% concordance rate with tumor exome sequencing and enabled the identification of the KDR/VEGFR2 L840F clonal, somatic mutation as the cause of therapy refractoriness in our patient. In addition, we found that 1% to 3% of samples from cancer sequencing projects harbor KDR somatic mutations located in protein residues frequently mutated in other cancer-relevant kinases, such as EGFR, ABL1, and ALK. Our in vitro and in vivo functional assays confirmed that L840F causes strong resistance to antiangiogenic drugs, whereas the KDR hot-spot mutant R1032Q confers sensitivity to strong VEGFR2 inhibitors. Moreover, we showed that the D717V, G800D, G800R, L840F, G843D, S925F, R1022Q, R1032Q, and S1100F VEGFR2 mutants promote tumor growth in mice. Conclusions: Our study supports WES-cfDNA as a powerful platform for portraying the somatic mutation landscape of cancer and discovery of new resistance mechanisms to cancer therapies. Importantly, we discovered that VEGFR2 is somatically mutated across tumor types and that VEGFR2 mutants can be oncogenic and control sensitivity/resistance to antiangiogenic drugs. Clin Cancer Res; 24(15); 3550–9. ©2018 AACR.
- Published
- 2018
33. Prognostic stratification of adult primary glioblastoma multiforme patients based on their tumor gene amplification profiles
- Author
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Maria do Carmo Lopes, Hermínio Tão, Ana Filipa Guedes, Maria C. Patino-Alonso, Pablo Sousa, María Dolores Tabernero, Olinda Rebelo, María González-Tablas, Ana Luísa Vital, Ana Belen Nieto, Álvaro Otero, Pim J. French, Maria Rosário Almeida, Alberto Orfao, Luis A. Corchete, Marcos Barbosa, Inês Crespo, Red Temática de Investigación Cooperativa en Cáncer (España), Instituto de Salud Carlos III, Ministerio de Economía y Competitividad (España), European Commission, Junta de Castilla y León, and Neurology
- Subjects
0301 basic medicine ,Gene amplification ,Subtypes ,Survival ,genes supresores de tumores ,glioblastoma ,Chromosome ,Biology ,Classification ,DNA sequencing ,Prognostic stratification ,03 medical and health sciences ,3201.01 Oncología ,030104 developmental biology ,Oncology ,Primary Glioblastoma Multiforme ,síntomas de cáncer ,Chromosomal region ,Gene duplication ,Cancer research ,EGFR Gene Amplification ,Genes, Tumor Suppressor ,Gene ,3205.07 Neurología ,Research Paper - Abstract
Several classification systems have been proposed to address genomic heterogeneity of glioblastoma multiforme, but they either showed limited prognostic value and/or are difficult to implement in routine diagnostics. Here we propose a prognostic stratification model for these primary tumors based on tumor gene amplification profiles, that might be easily implemented in routine diagnostics, and potentially improve the patients management. Gene amplification profiles were prospectively evaluated in 80 primary glioblastoma multiforme tumors using single-nucleotide polymorphism arrays and the results obtained validated in publicly available data from 267/347 cases. Gene amplification was detected in 45% of patients, and chromosome 7p11.2 including the EGFR gene, was the most frequently amplified chromosomal region – either alone (18%) or in combination with amplification of DNA sequences in other chromosomal regions (10% of cases). Other frequently amplified DNA sequences included regions in chromosomes 12q(10%), 4q12(7%) and 1q32.1(4%). Based on their gene amplification profiles, glioblastomas were subdivided into: i) tumors with no gene amplification (55%); ii) tumors with chromosome 7p/EGFR gene amplification (with or without amplification of other chromosomal regions) (38%); and iii) glioblastoma multiforme with a single (11%) or multiple (6%) amplified DNA sequences in chromosomal regions other than chromosome 7p. From the prognostic point of view, these amplification profiles showed a significant impact on overall survival of glioblastoma multiforme patients (p>0.001). Based on these gene amplification profiles, a risk-stratification scoring system was built for prognostic stratification of glioblastoma which might be easily implemented in routine diagnostics, and potentially contribute to improved patient management., This work was supported by RETICC RD06/0020/0035, RD06/0020/0059 and RD12/0036/0048 grants from Red Temática de Investigación Cooperativa en Cáncer (RTICC), Instituto de Salud Carlos III, Ministerio de Economía y Competitividad, (Madrid, Spain and FONDOS FEDER), AES PI16/000476 (Instituto de Salud Carlos III, Madrid, Spain and FONDOS FEDER), GRS909A14 (JCYL) and CB16/12/00400 grant (CIBERONC, Instituto de Salud Carlos III, Ministerio de Economía y Competitividad, Madrid, Spain and FONDOS FEDER).
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- 2018
34. Relevancia de la escala de Simpson en la resección de meningiomas de grado I de la OMS
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Pablo Sousa, J. Gonçalves, Álvaro Otero, María Tabernero, Laura Ruiz, María Cristina Muñoz, Daniel Pascual, and David Miranda
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03 medical and health sciences ,0302 clinical medicine ,business.industry ,030220 oncology & carcinogenesis ,Medicine ,Surgery ,Neurology (clinical) ,business ,Humanities ,030217 neurology & neurosurgery - Abstract
Resumen Objetivo Evaluar si las tasas de recurrencia y las supervivencias libres de recurrencia/progresion (RFS) son diferentes en meningiomas de grado I de la Organizacion Mundial de la Salud (OMS) sometidos a resecciones grado I, II, III y IV de la escala de Simpson. Materiales y metodos Revisamos de manera retrospectiva los datos de los pacientes que se sometieron a tratamiento quirurgico de meningiomas de grado I de la OMS localizados en la convexidad, hoz/parasagital y base de craneo entre junio de 1991 y diciembre de 2011. En el caso de las resecciones grado IV de Simpson la cirugia se complemento con radiocirugia o radioterapia sobre el resto tumoral. Comparamos las tasas de recurrencia y las RFS de los diferentes grados de Simpson tanto de manera global como por localizacion. Resultados En el estudio se incluyeron 208 meningiomas. No existieron diferencias significativas en las tasas de recurrencia y en las RFS entre los diferentes grados de Simpson. Por localizacion, tampoco detectamos diferencias entre los grados de reseccion. En meningiomas de convexidad, las tasas de recurrencia en los grados I y III fueron del 7 y del 33%, respectivamente (p = 0,131). Conclusiones Este estudio sugiere que las tasas de control tumoral son independientes de los grados de Simpson. En meningiomas de hoz/parasagital y de base de craneo debe valorarse la agresividad quirurgica frente a los riesgos de lesionar estructuras neurovasculares. En meningiomas de convexidad, el objetivo inicial deberia ser una reseccion grado I.
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- 2017
35. Predicción de nubes a corto plazo para una planta solar a partir de datos históricos
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Luis F. Zarzalejo, Rafael Caballero, Álvaro Otero, Luis Piñuel, Stefan Wilbert, and De Giusti, Armando
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lcsh:Computer engineering. Computer hardware ,Meteorology ,Nowcasting ,Computer science ,020209 energy ,Irradiance ,LSTM ,Ciencias Informáticas ,lcsh:TK7885-7895 ,Cloud computing ,Qualifizierung ,02 engineering and technology ,Solar irradiance ,lstm ,lcsh:QA75.5-76.95 ,Artificial Intelligence ,cloud nowcasting ,0202 electrical engineering, electronic engineering, information engineering ,Computer Science (miscellaneous) ,supervised machine learning ,Solar power ,previsión de nubes ,business.industry ,prendizaje automático supervisado ,Inteligencia artificial ,Computer Science Applications ,Term (time) ,Hardware and Architecture ,Temporal resolution ,lcsh:Electronic computers. Computer science ,Computer Vision and Pattern Recognition ,GHI ,business ,Software - Abstract
This work considers the problem of forecasting the normal solar irradiance with high spatial and temporal resolution (5 minutes). The forecasting is based on a dataset registered during one year from the high resolution radiometric network at a operational solar power plan at Almeria, Spain. In particular, we show a technique for forecasting the irradiance in the next few minutes from the irradiance values obtained on the previous hour. Our proposal employs a type of recurrent neural network known as LSTM, which can learn complex patterns and that has proven its usability for forecasting temporal series. The results show a reasonable improvement with respect to other prediction methods typically employed in the studies of temporal series., Es este trabajo se aborda el problema de la predicción de radiación global sobre superficie horizontal con alta resolución espacial y temporal (5 minutos) a partir de los datos registrados durante un año en la red radiométrica de alta resolución ubicada en la Plataforma Solar de Almería. En particular se muestra un método capaz de predecir el valor de radiación en los siguientes minutos a partir de los valores de los minutos anteriores. El método emplea el tipo de red neuronal recurrente conocido como LSTM, capaz de aprender patrones complejos y predecir el próximo elemento de una serie temporal. Los resultados muestran una mejora apreciable en con respecto a los métodos de predicción empleados habitualmente en el estudio de series temporales., Facultad de Informática
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- 2018
36. Molecular and Genomic Alterations in Glioblastoma Multiforme
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Alberto Orfao, Patrícia Domingues, Álvaro Otero, Catarina de Oliveira, Maria do Carmo Lopes, María Dolores Tabernero, Maria del Carmen Patino, Inês Crespo, María González-Tablas, and Ana Luísa Vital
- Subjects
Epigenomics ,Genetics ,Brain Neoplasms ,Retinoblastoma ,Genetic heterogeneity ,Genomics ,Biology ,medicine.disease ,Pathology and Forensic Medicine ,Mice ,Cyclin-dependent kinase ,Mutation ,Genomic Profile ,medicine ,Cancer research ,biology.protein ,Animals ,Humans ,Tensin ,Glioblastoma ,Protein kinase B ,Signal Transduction - Abstract
In recent years, important advances have been achieved in the understanding of the molecular biology of glioblastoma multiforme (GBM); thus, complex genetic alterations and genomic profiles, which recurrently involve multiple signaling pathways, have been defined, leading to the first molecular/genetic classification of the disease. In this regard, different genetic alterations and genetic pathways appear to distinguish primary (eg, EGFR amplification) versus secondary (eg, IDH1/2 or TP53 mutation) GBM. Such genetic alterations target distinct combinations of the growth factor receptor–ras signaling pathways, as well as the phosphatidylinositol 3-kinase/phosphatase and tensin homolog/AKT, retinoblastoma/cyclin-dependent kinase (CDK) N2A-p16 INK4A , and TP53/mouse double minute (MDM) 2/MDM4/CDKN2A-p14 ARF pathways, in cells that present features associated with key stages of normal neurogenesis and (normal) central nervous system cell types. This translates into well-defined genomic profiles that have been recently classified by The Cancer Genome Atlas Consortium into four subtypes: classic, mesenchymal, proneural, and neural GBM. Herein, we review the most relevant genetic alterations of primary versus secondary GBM, the specific signaling pathways involved, and the overall genomic profile of this genetically heterogeneous group of malignant tumors.
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- 2015
37. The protein expression profile of meningioma cells is associated with distinct cytogenetic tumour subgroups
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María Dolores Tabernero, Catarina de Oliveira, Pablo Sousa, Álvaro Otero, Cristina Teodosio, Patrícia Domingues, Ana Belen Nieto, Alberto Orfao, Maria do Carmo Lopes, and Jesús María Gonçalves
- Subjects
Regulation of gene expression ,CD53 ,medicine.medical_specialty ,Monosomy ,Pathology ,Histology ,biology ,medicine.diagnostic_test ,Proliferation index ,CD44 ,Cytogenetics ,medicine.disease ,Pathology and Forensic Medicine ,Meningioma ,Neurology ,Physiology (medical) ,biology.protein ,medicine ,Neurology (clinical) ,Fluorescence in situ hybridization - Abstract
Aims Limited information exists about the impact of cytogenetic alterations on the protein expression profiles of individual meningioma cells and their association with the clinicohistopathological characteristics of the disease. The aim of this study is to investigate the potential association between the immunophenotypic profile of single meningioma cells and the most relevant features of the tumour. Methods Multiparameter flow cytometry (MFC) was used to evaluate the immunophenotypic profile of tumour cells (n = 51 patients) and the Affymetrix U133A chip was applied for the analysis of the gene expression profile (n = 40) of meningioma samples, cytogenetically characterized by interphase fluorescence in situ hybridization. Results Overall, a close association between the pattern of protein expression and the cytogenetic profile of tumour cells was found. Thus, diploid tumours displayed higher levels of expression of the CD55 complement regulatory protein, tumours carrying isolated monosomy 22/del(22q) showed greater levels of bcl2 and PDGFRβ and meningiomas carrying complex karyotypes displayed a greater proliferation index and decreased expression of the CD13 ectoenzyme, the CD9 and CD81 tetraspanins, and the Her2/neu growth factor receptor. From the clinical point of view, higher expression of CD53 and CD44 was associated with a poorer outcome. Conclusions Here we show that the protein expression profile of individual meningioma cells is closely associated with tumour cytogenetics, which may reflect the involvement of different signalling pathways in the distinct cytogenetic subgroups of meningiomas, with specific immunophenotypic profiles also translating into a different tumour clinical behaviour.
- Published
- 2015
38. A Short Region of Connexin43 Reduces Human Glioma Stem Cell Migration, Invasion, and Survival through Src, PTEN, and FAK
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Alberto Orfao, José M. Medina, Arantxa Tabernero, Myriam Jaraíz-Rodríguez, Álvaro Otero, Ma Dolores Tabernero, María González-Tablas, Ministerio de Economía y Competitividad (España), Junta de Castilla y León, Fundación Ramón Areces, and European Commission
- Subjects
0301 basic medicine ,connexin ,PTEN ,Human Glioma Stem Cell Migration ,migration ,Biochemistry ,CSK Tyrosine-Protein Kinase ,2302.22 Farmacología Molecular ,Transcellular Cell Migration ,Cell Movement ,glioma ,migración transcelular de células ,Tensin ,lcsh:QH301-705.5 ,conexina 43 ,lcsh:R5-920 ,biology ,genes src ,invasion ,Connexin43 (CX43) ,Cell biology ,Genes, src ,src-Family Kinases ,Mixed Tumor, Malignant ,Neoplastic Stem Cells ,cardiovascular system ,biological phenomena, cell phenomena, and immunity ,Stem cell ,CNS ,lcsh:Medicine (General) ,Src ,PTEN fosfohidrolasa ,Proto-oncogene tyrosine-protein kinase Src ,Cell Survival ,glioma stem cell ,Recombinant Fusion Proteins ,Instituto de Investigación Biomédica de Salamanca ,Motility ,Models, Biological ,Article ,Focal adhesion ,Malignant tumor ,03 medical and health sciences ,Cell Line, Tumor ,Glioma ,Genetics ,medicine ,Humans ,Cell Proliferation ,FAK ,Cell growth ,PTEN Phosphohydrolase ,Cell Biology ,Human glioma ,medicine.disease ,Peptide Fragments ,tumor mixto maligno ,030104 developmental biology ,lcsh:Biology (General) ,Focal Adhesion Protein-Tyrosine Kinases ,Connexin 43 ,biology.protein ,Cancer research ,Stem Cell Migration ,sense organs ,Developmental Biology - Abstract
Summary Connexin43 (CX43), a protein that forms gap junction channels and hemichannels in astrocytes, is downregulated in high-grade gliomas. Its relevance for glioma therapy has been thoroughly explored; however, its positive effects on proliferation are counterbalanced by its effects on migration and invasion. Here, we show that a cell-penetrating peptide based on CX43 (TAT-Cx43266-283) inhibited c-Src and focal adhesion kinase (FAK) and upregulated phosphatase and tensin homolog in glioma stem cells (GSCs) derived from patients. Consequently, TAT-Cx43266-283 reduced GSC motility, as analyzed by time-lapse microscopy, and strongly reduced their invasive ability. Interestingly, we investigated the effects of TAT-Cx43266-283 on freshly removed surgical specimens as undissociated glioblastoma blocks, which revealed a dramatic reduction in the growth, migration, and survival of these cells. In conclusion, a region of CX43 (amino acids 266–283) exerts an important anti-tumor effect in patient-derived glioblastoma models that includes impairment of GSC migration and invasion., Highlights • TAT-Cx43266-283 exerts anti-tumor effects in patient-derived glioblastoma models • TAT-Cx43266-283 targets Src, PTEN, and FAK • TAT-Cx43266-283 inhibits glioma stem cell migration and invasion, In this article, Arantxa Tabernero and colleagues show that a short region of Connexin43 exerts an important anti-tumor effect in patient-derived glioblastoma models that includes the impairment of glioma stem cell migration and invasion. This peptide targets important proteins for glioblastoma, such as Src, FAK, and PTEN, highlighting its relevance for therapeutic development against this incurable disease.
- Published
- 2017
39. PO-291 A cell-penetrating peptide based on the connexin43-Src interacting sequence reduces glioma stem cell migration and proliferation by recruiting Src, Csk and PTEN
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María Dolores Tabernero, María González-Tablas, Myriam Jaraíz-Rodríguez, A. Orfao, Arantxa Tabernero, José M. Medina, and Álvaro Otero
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Cancer Research ,medicine.diagnostic_test ,biology ,Chemistry ,Cell ,medicine.disease ,Focal adhesion ,medicine.anatomical_structure ,Oncology ,Western blot ,Glioma ,medicine ,Cancer research ,biology.protein ,Phosphorylation ,PTEN ,Stem cell ,Proto-oncogene tyrosine-protein kinase Src - Abstract
Introduction The expression of connexin43 (Cx43), the main gap junction channel-forming protein, is down-regulated in glioma stem cells (GSC). Our previous studies showed that a cell-penetrating peptide containing the region of Cx43 that interacts with the oncoprotein c-Src (TAT-Cx43266–283), inhibits its oncogenic activity and up-regulates the tumour suppressor PTEN. Through this pathway, TAT-Cx43266–283 reduces glioma cell proliferation and reverses the GSC phenotype. Our next goal was to uncover the mechanism of action and the effects of TAT-Cx43266–283 on the migration and invasion of human GSCs. Material and methods Human primary GSCs (G9, G12, G13, G15 and G16) were obtained from glioblastoma patients’ biopsies from the Neurosurgery Service of the Hospital Universitario de Salamanca, Spain. The migration was analysed in these primary GSCs by tracking individual cell trajectories in cultures recorded by Time-Lapse Live-cell Imaging and the invasion with Matrigel-treated transwell inserts. The same tumour biopsies were used to study the effect of TAT-Cx43266–283 on fresh undissociated tumour blocks by time-lapse microscopy. The molecular interactions were studied in G166 GSCs by pull-down assays of biotinylated TAT-Cx43266–283 (TAT-Cx43266–283-B) and Western blot analysis. Results and discussions Our results confirmed that TAT-Cx43266–283 strongly reduces the migration and invasion of human primary GSCs by inhibiting c-Src activity and up-regulating PTEN that consequently, lowers the levels of phosphorylation of focal adhesion kinase tyrosines 397, 576 and 577. In addition, fresh undissociated tumour blocks revealed a dramatic reduction on the survival of these glioblastoma cells when exposed to TAT-Cx43266–283. By pull-down assays, we showed that TAT-Cx43266–283-B recruits c-Src together with its inhibitors PTEN and Csk, confirming the proposed mechanism for Cx43. Conclusion In conclusion, TAT-Cx43266–283 exerts an important antitumor effect by inhibiting c-Src and up-regulating PTEN with the subsequent reduction in FAK phosphorylation required to establish appropriate focal adhesions for migration, proliferation and survival. This inhibition is mediated by the recruitment of the c-Src intrinsic inhibitors, PTEN and Csk. All together, these results reinforce the relevance of this sequence of Cx43 that interacts with c-Src for the development of new therapies against glioblastoma.
- Published
- 2018
40. [Relevance of Simpson's grading system for resections in WHO grade I meningiomas]
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María Tabernero, Laura Ruiz, Álvaro Otero, Pablo Sousa, David Miranda, María Cristina Muñoz, Jesús María Gonçalves, and Daniel Pascual
- Subjects
Adult ,Male ,medicine.medical_specialty ,medicine.medical_treatment ,Radiosurgery ,Disease-Free Survival ,Meningioma ,03 medical and health sciences ,0302 clinical medicine ,otorhinolaryngologic diseases ,medicine ,Meningeal Neoplasms ,Humans ,Meningeal Neoplasm ,Aged ,Retrospective Studies ,Neoplasm Grading ,business.industry ,Retrospective cohort study ,Who grade ,Middle Aged ,Neurovascular bundle ,medicine.disease ,nervous system diseases ,Surgery ,Radiation therapy ,030220 oncology & carcinogenesis ,Female ,Neoplasm Recurrence, Local ,business ,030217 neurology & neurosurgery - Abstract
Object The aim of this study is to assess if the recurrence rates and recurrence/progression-free survivals (RFS) are different after Simpson's grades I, II, III and IV resections in World Health Organisation (WHO) grade I meningiomas. Material and methods A retrospective review was conducted on the data of patients who underwent surgical treatment of WHO grade I meningiomas located in convexity, falx/parasagittal, and skull base (anterior/media/posterior) between June 1991 and December 2011. In Simpson's grade IV resections, surgical treatment was supplemented with radiotherapy/radiosurgery on the tumour remains. A comparison was made on the recurrence rates and RFSs between Simpson's grades I, II, III, and IV resections, both overall and in tumour subsets according to their location. Results A total of 208 meningiomas were included in this study. There were no significant differences in recurrence rates and RFSs between Simpson's grades I, II, III, and IV. No significant differences were noted between the different degrees of Simpson in any of the location groups. In convexity meningiomas, the recurrence rates were 7% and 33% in Simpson's grades I and III resections, respectively (p = .131). Conclusions It has been shown that the rates of tumour control in meningiomas are not related to Simpson grades. In falx/parasagittal and skull base meningiomas, more aggressive attempts of tumour resection must be balanced against the risks of damaging critical neurovascular structures. In convexity meningiomas, a Simpson's grade I resection should be attempted first.
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- 2016
41. Genetic/molecular alterations of meningiomas and the signaling pathways targeted
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María Dolores Tabernero, Laura Ruiz, Alberto Orfao, María González-Tablas, Patrícia Domingues, Jesús María Gonçalves, David Miranda, Daniel Pascual, Álvaro Otero, Maria do Carmo Lopes, Pablo Sousa, Fundação para a Ciência e a Tecnologia (Portugal), Instituto de Salud Carlos III, Ministerio de Sanidad y Consumo (España), Instituto de Investigación Biomédica de Salamanca, and Instituto de Estudios de Ciencias de la Salud de Castilla y León
- Subjects
Monosomy ,signal pathways ,Chromosomes, Human, Pair 22 ,Nf2 gene ,ComputingMilieux_LEGALASPECTSOFCOMPUTING ,Review ,Biology ,meningioma ,Prognostic stratification ,Meningioma ,Kruppel-Like Factor 4 ,medicine ,otorhinolaryngologic diseases ,Meningeal Neoplasms ,Humans ,Genetic Predisposition to Disease ,Genetics ,Neurofibromin 2 ,Signal Pathways ,Models, Genetic ,Genetic molecular ,genetic/molecular alteration ,University hospital ,medicine.disease ,chromosome 22 ,Oncology ,Chromosome 22 ,Signal Transduction - Abstract
This is an open-access article distributed under the terms of the Creative Commons Attribution License.-- et al., Meningiomas are usually considered to be benign central nervous system tumors; however, they show heterogenous clinical, histolopathological and cytogenetic features associated with a variable outcome. In recent years important advances have been achieved in the identification of the genetic/molecular alterations of meningiomas and the signaling pathways involved. Thus, monosomy 22, which is often associated with mutations of the NF2 gene, has emerged as the most frequent alteration of meningiomas; in addition, several other genes (e.g. AKT1, KLF4, TRAF7, SMO) and chromosomes have been found to be recurrently altered often in association with more complex karyotypes and involvement of multiple signaling pathways. Here we review the current knowledge about the most relevant genes involved and the signaling pathways targeted by such alterations. In addition, we summarize those proposals that have been made so far for classification and prognostic stratification of meningiomas based on their genetic/genomic features., This work was partially supported by grants from the Fundação para a Ciência e Tecnologia (PIC/IC/83108/2007, FCT, Portugal), Fondo de Investigaciones Sanitarias (RD12/0036/0048, Instituto de Salud Carlos III (ISCIII/FEDER), Ministerio de Sanidad y Consumo, Madrid, Spain), and Consejeria Sanidad Junta de Castilla y León, Gerencia Regional de Salud: GRS689/A/11, and Proyecto Intramural-IBSAL IB14-05. Patrícia Domingues is partially supported by a grant (SFRH/BD/64799/2009) from FCT. Maria Dolores Tabernero is supported by IECSCYL (Soria, Spain).
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- 2015
42. Proposal for a new risk stratification classification for meningioma based on patient age, WHO tumor grade, size, localization, and karyotype
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Alberto Orfao, Patrícia Domingues, Álvaro Otero, Catarina de Oliveira, Maria do Carmo Lopes, Jesús María Gonçalves, María Dolores Tabernero, Pablo Sousa, Laura Ruiz, Junta de Castilla y León, Fundación Mutua Madrileña, Ministerio de Sanidad y Consumo (España), Instituto de Salud Carlos III, Red Temática de Investigación Cooperativa en Cáncer (España), Fundação para a Ciência e a Tecnologia (Portugal), and Instituto de Estudios de Ciencias de la Salud de Castilla y León
- Subjects
Adult ,Male ,Cancer Research ,medicine.medical_specialty ,Adolescent ,Clinical Investigations ,Disease ,Biology ,iFISH ,Meningioma ,Young Adult ,Recurrence ,Risk Factors ,medicine ,Humans ,Child ,Risk stratification ,In Situ Hybridization, Fluorescence ,Aged ,Aged, 80 and over ,Neoplasm Grading ,SNP arrays ,Base of skull ,medicine.diagnostic_test ,Brain Neoplasms ,Cytogenetics ,Age Factors ,Middle Aged ,medicine.disease ,Survival Analysis ,Surgery ,Oncology ,Karyotyping ,Benign Meningioma ,Cytogenetic Analysis ,Histopathology ,Female ,Neurology (clinical) ,Radiology ,Fluorescence in situ hybridization - Abstract
[Background]: Tumor recurrence remains the major clinical complication of meningiomas, the majority of recurrences occurring among WHO grade I/benign tumors. In the present study, we propose a new scoring system for the prognostic stratification of meningioma patients based on analysis of a large series of meningiomas followed for a median of >5 years. [Methods]: Tumor cytogenetics were systematically investigated by interphase fluorescence in situ hybridization in 302 meningioma samples, and the proposed classification was further validated in an independent series of cases (n = 132) analyzed by high-density (500K) single-nucleotide polymorphism (SNP) arrays. [Results]: Overall, we found an adverse impact on patient relapse-free survival (RFS) for males, presence of brain edema, younger patients (50 mm, tumor localization at intraventricular and anterior cranial base areas, WHO grade II/III meningiomas, and complex karyotypes; the latter 5 variables showed an independent predictive value in multivariate analysis. Based on these parameters, a prognostic score was established for each individual case, and patients were stratified into 4 risk categories with significantly different (P, This work was partially supported by grants from the Fundação para a Ciência e Tecnologia (PIC/IC/83108/2007, FCT, Portugal); Fondo de Investigaciones Sanitarias (FIS/FEDER 06/0312 and RETICC RD06/0020/0035, RD06/0020/0059 and RD12/0036/0048, Instituto de Salud Carlos III (ISCIII/FEDER), Ministerio de Sanidad y Consumo, Madrid, Spain), Caja Burgos (Spain), Fundación MMA (exp 75312010 and 87692011, Madrid, Spain), and Consejeria Sanidad Junta de Castilla y León, Gerencia Regional de Salud: GRS689/A/11. Patrícia Domingues is supported by grant (SFRH/BD/64799/2009) from FCT. Maria Dolores Tabernero is supported by IECSCYL (Fundación Instituto de Estudios Ciencias de la Salud de Castilla y León, Soria, Spain).
- Published
- 2014
43. The protein expression profile of meningioma cells is associated with distinct cytogenetic tumour subgroups
- Author
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Patrícia Henriques, Domingues, Cristina, Teodósio, Álvaro, Otero, Pablo, Sousa, Jesus Maria, Gonçalves, Ana Belen, Nieto, Maria Celeste, Lopes, Catarina, de Oliveira, Alberto, Orfao, and Maria Dolores, Tabernero
- Subjects
Adult ,Aged, 80 and over ,Male ,Gene Expression Profiling ,Cell Separation ,Middle Aged ,Flow Cytometry ,Young Adult ,Cytogenetic Analysis ,Biomarkers, Tumor ,Meningeal Neoplasms ,Humans ,Female ,Meningioma ,In Situ Hybridization, Fluorescence ,Aged ,Oligonucleotide Array Sequence Analysis - Abstract
Limited information exists about the impact of cytogenetic alterations on the protein expression profiles of individual meningioma cells and their association with the clinicohistopathological characteristics of the disease. The aim of this study is to investigate the potential association between the immunophenotypic profile of single meningioma cells and the most relevant features of the tumour.Multiparameter flow cytometry (MFC) was used to evaluate the immunophenotypic profile of tumour cells (n = 51 patients) and the Affymetrix U133A chip was applied for the analysis of the gene expression profile (n = 40) of meningioma samples, cytogenetically characterized by interphase fluorescence in situ hybridization.Overall, a close association between the pattern of protein expression and the cytogenetic profile of tumour cells was found. Thus, diploid tumours displayed higher levels of expression of the CD55 complement regulatory protein, tumours carrying isolated monosomy 22/del(22q) showed greater levels of bcl2 and PDGFRβ and meningiomas carrying complex karyotypes displayed a greater proliferation index and decreased expression of the CD13 ectoenzyme, the CD9 and CD81 tetraspanins, and the Her2/neu growth factor receptor. From the clinical point of view, higher expression of CD53 and CD44 was associated with a poorer outcome.Here we show that the protein expression profile of individual meningioma cells is closely associated with tumour cytogenetics, which may reflect the involvement of different signalling pathways in the distinct cytogenetic subgroups of meningiomas, with specific immunophenotypic profiles also translating into a different tumour clinical behaviour.
- Published
- 2013
44. Evacuación de hematomas intracerebrales mediante vaina endoscópica y vaina transparente. estudio experimental
- Author
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Álvaro Otero Rodríguez, Sánchez Ledesma, María José, Pérez de la Cruz, María Ángeles, Gonçalves Estella, Jesús María, and Sánchez Leddesma, María José
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Academic dissertations ,Cirugía ,Daños cerebrales ,Brain damages ,Surgery ,Universidad de Salamanca (España) ,Investigación::32 Ciencias médicas::3213 Cirugía [Materias] ,Tesis y disertaciones académicas ,3213 Cirugía - Abstract
[ES]La evacuación endoscópica se considera una alternativa a la craneotomía convencional en el tratamiento de los hematomas intracerebrales, sobre todo si se localizan en estructuras profundas. La valoración de la eficacia de la técnica y sus modificaciones en el animal experimental es fundamental como paso previo a la introducción en la clínica. Los objetivos del estudio fueron desarrollar en el cerdo un modelo de hematoma intracerebral, valorar la eficacia de la evacuación endoscópica y evaluar un nuevo modelo de vaina transparente como instrumento accesorio a la endoscopia. Se generaron hematomas intracerebrales en la sustancia blanca del lóbulo frontal derecho de 17 cerdos mediante la infusión de entre 7 y 20 cc de sangre autóloga. Los animales fueron sacrificados a las 4 horas, 24 horas y 5 días tras la formación del hematoma. Se determinaron los volúmenes residuales y los hallazgos anatomopatológicos en los cerebros fijados tanto en el grupo a los que no se les evacuó el hematoma (grupo control, 6 animales) como el grupo de evacuación endoscópica (grupo problema, 10 animales). La evacuación endoscópica en el grupo problema tuvo lugar a las 2 horas y 12 horas de haberse generado el hematoma. Como accesorio del endoscopio, se utilizó una vaina transparente con un componente externo, con final romo y cerrado, y un componente interno, a través del cual se introducía el endoscopio. Además, a 7 animales se les administró Azul de Evans tras la formación del hematoma (grupo problema de Evans). El volumen residual en el grupo problema fue significativamente menor que el del grupo control (56.25 cc comparado con 565 cc del grupo control, p, [EN] Endoscopic removal is considered an alternative to conventional craniotomy in the treatment of intracerebral hematomas , especially if located in deep structures . The assessment of the effectiveness of the technique and its modifications in the experimental animal is essential as a pre- step introduction into the clinic . The objectives of the study were to develop in the pig model of intracerebral hematoma, assess the efficacy of endoscopic evacuation and evaluate a new model of transparent sleeve as an adjunct to endoscopic instrument. Intracerebral hematomas were generated in the white matter of the right frontal lobe of 17 pigs by infusion of between 7 and 20 cc of autologous blood . The animals were sacrificed at 4 hours, 24 hours and 5 days after hematoma formation . Residual volumes and pathological findings in the brains fixed in both the group to which they were not evacuated the hematoma (control group , 6 animals ) and the endoscopic drainage group ( problem group , 10 animals ) were determined. Endoscopic evacuation in the problem group took place at 2 hours and 12 hours of the hematoma have been generated . As an accessory of the endoscope , a transparent shell with an external component , blunt , closed end , and an internal component is used , through which the endoscope is introduced . In addition , 7 animals were dosed after Evans Blue hematoma formation ( Evans problem group).
- Published
- 2013
45. Vestibular compensation after vestibular schwannoma surgery: normalization of the subjective visual vertical and disability
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Nicolas Perez-Fernandez, Pablo Sousa, Álvaro Otero, Angel Batuecas-Caletrio, Santiago Santacruz-Ruiz, and Angel Muñoz-Herrera
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Adult ,Male ,medicine.medical_specialty ,Weakness ,Time Factors ,Schwannoma ,Dizziness ,Cohort Studies ,Disability Evaluation ,Vertigo ,otorhinolaryngologic diseases ,medicine ,Videonystagmography ,Humans ,Postural Balance ,Vestibular system ,Vestibular areflexia ,biology ,medicine.diagnostic_test ,business.industry ,Caloric theory ,General Medicine ,Neuroma, Acoustic ,Recovery of Function ,Middle Aged ,Vestibular Function Tests ,biology.organism_classification ,medicine.disease ,Neuroma ,humanities ,Surgery ,Otorhinolaryngology ,Visual Perception ,Female ,medicine.symptom ,business - Abstract
The degree of caloric weakness before surgery influences faster or slower recovery of patients undergoing vestibular schwannoma surgery. The Dizziness Handicap Inventory (DHI) is a good index to show the recovery of patients as it relates directly to an improvement or not of the subjective visual vertical (SVV).To evaluate the process of recovery of patients as measured by the SVV and the DHI after surgical removal of vestibular schwannoma.We studied 24 consecutive patients of the University Hospital of Salamanca who underwent vestibular schwannoma surgery. We assessed age, tumour size, degree of canalicular weakness and preoperative SVV, and their relationship with DHI and SVV at discharge and also at 1, 3 and 6 months postoperatively.Patients with lesser degrees of caloric weakness took longer to normalize SVV than those with a higher caloric weakness before surgery (p0.05). There was a significant correlation between DHI and improvements in SVV with time. The differences disappeared in 6 months where all patients, with greater or lesser degree of caloric weakness, had the same results.
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- 2013
46. Association between mutation of the NF2 gene and monosomy 22 in menopausal women with sporadic meningiomas
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Pablo Sousa, Jesús María Gonçalves, Patrícia Domingues, Álvaro Otero, Alberto Orfao, MariaDolores Tabernero, Ana Belen Nieto, María Jara-Acevedo, Arancha Rodríguez Caballero, Junta de Castilla y León, Instituto de Salud Carlos III, Ministerio de Sanidad y Consumo (España), Fundación Caja de Burgos, and Instituto de Estudios de Ciencias de la Salud de Castilla y León
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Male ,medicine.medical_specialty ,Monosomy ,Mutation rate ,NF2 gene ,Chromosomes, Human, Pair 22 ,Gene Dosage ,Loss of Heterozygosity ,ComputingMilieux_LEGALASPECTSOFCOMPUTING ,Biology ,medicine.disease_cause ,Gene dosage ,Polymorphism, Single Nucleotide ,Meningioma ,Loss of heterozygosity ,Mutation Rate ,Sporadic meningiomas ,medicine ,Genetics ,Meningeal Neoplasms ,otorhinolaryngologic diseases ,Humans ,Genetics(clinical) ,Genetics (clinical) ,Aged ,Mutation ,Neurofibromin 2 ,Cytogenetics ,Exons ,Middle Aged ,medicine.disease ,Cancer research ,Female ,Chromosome Deletion ,Menopause ,Menopausal women ,Monosomy 22 ,Chromosome 22 ,Research Article - Abstract
This is an open-access article distributed under the terms of the Creative Commons Attribution License., [Background]: Meningioma was the first solid tumor shown to contain a recurrent genetic alteration e.g. monosomy 22/del(22q), NF2 being the most relevant gene involved. Although monosomy 22/del(22q) is present in half of all meningiomas, and meningiomas frequently carry NF2 mutations, no study has been reported so far in which both alterations are simultaneously assessed and correlated with the features of the disease. [Methods]: Here, we analyzed the frequency of both copy number changes involving chromosome 22 and NF2 mutations in 20 sporadic meningiomas using high-density SNP-arrays, interphase-FISH and PCR techniques. [Results]: Our results show a significant frequency of NF2 mutations (6/20 patients, 30%), most of which (5/6) had not been previously reported in sporadic meningiomas. NF2 mutations involved five different exons and led to a truncated protein (p.Leu163CysfsX46, p.Phe62LeufsX61, p.Asp281MetfsX15, p.Phe285LeufsX11, p.Gln389ArgfsX37) and an in frame deletion of Phe119. Interestingly, all NF2 mutated cases were menopausal women with monosomy 22 but not del(22q). [Conclusions]: These results confirm and extend on previous observations about the high frequency and heterogeneity of NF2 mutations in sporadic meningiomas and indicate they could be restricted to a well-defined cytogenetic and clinical subgroup of menopausal women. Further studies in large series of patients are required to confirm our observations., This work has been partially supported by grants from Consejeria Sanidad Junta de Castilla y León, Gerencia Regional de Salud: GRS689/A/11. Fondo de Investigaciones Sanitarias, Instituto de Salud Carlos III, Ministerio de Sanidad y Consumo, Madrid, Spain: RTICC RD06/0020/0035, RD06/0020/0059 and RD12/0036/0048. MD Tabernero is supported by IECSCYL (Fundación Instituto de Estudios Ciencias de la Salud de Castilla y León).
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- 2013
47. Immunophenotypic identification and characterization of tumor cells and infiltrating cell populations in meningiomas
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Paloma Bárcena, Álvaro Otero, María Dolores Tabernero, Alberto Orfao, Cristina Teodosio, Pablo Sousa, María C. García-Macías, Maria do Carmo Lopes, Angel Maillo, Catarina de Oliveira, Javier Ortiz, and Patrícia Domingues
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Adult ,Male ,CD14 ,Cell ,CD16 ,Biology ,Pathology and Forensic Medicine ,Immunophenotyping ,Immune system ,Lymphocytes, Tumor-Infiltrating ,Phagocytosis ,medicine ,Meningeal Neoplasms ,Cytotoxic T cell ,Humans ,RNA, Messenger ,Cell adhesion ,Aged ,Aged, 80 and over ,Gene Expression Profiling ,Middle Aged ,Flow Cytometry ,Molecular biology ,Cell biology ,Cell Compartmentation ,Neoplasm Proteins ,Gene Expression Regulation, Neoplastic ,medicine.anatomical_structure ,Female ,Meningioma ,CD8 - Abstract
Meningiomas are primary tumors of the central nervous system composed of both neoplastic and other infiltrating cells. We determined the cellular composition of 51 meningioma samples by multiparameter flow cytometric (MFC) immunophenotyping and investigated the potential relationship between mRNA and protein expression levels of neoplastic cells. For immunophenotypic, morphologic, and cytogenetic characterization of individual cell populations, a large panel of markers was used together with phagocytic/endocytic functional assays and MFC sorting. Overall, our results revealed coexistence of CD45 − neoplastic cells and CD45 + immune infiltrating cells in all meningiomas. Infiltrating cells included tissue macrophages, with an HLA-DR + CD14 + CD45 + CD68 + CD16 −/+ CD33 −/+ phenotype and high phagocytic/endocytic activity, and a small proportion of cytotoxic lymphocytes (mostly T CD8 + and natural killer cells). Tumor cells expressed multiple cell adhesion proteins, tetraspanins, HLA-I/HLA-DR molecules, complement regulatory proteins, cell surface ectoenzymes, and growth factor receptors. Noteworthy, the relationship between mRNA and protein levels was variable, depending on the proteins evaluated and the level of infiltration by immune cells. In summary, our results indicate that MFC immunophenotyping provides a reliable tool for the characterization of the patterns of protein expression of different cell populations coexisting in meningioma samples, with a more accurate measure of gene expression profiles of tumor cells at the functional/protein level than conventional mRNA microarray, independently of the degree of infiltration of the tumor by immune cells.
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- 2012
48. Delineation of commonly deleted chromosomal regions in meningiomas by high-density single nucleotide polymorphism genotyping arrays
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María Tabernero, Ana Belén Espinosa, Maria C. Patino-Alonso, Abel Castrillo, Cristina Diez-Tascón, Monica Lara, Pablo Sousa, Alberto Orfao, Enrique de Alava, Ana Belen Nieto, Carlos Mackintosh, Angel Maillo, Álvaro Otero, Junta de Castilla y León, Instituto de Salud Carlos III, Ministerio de Ciencia e Innovación (España), Red Temática de Investigación Cooperativa en Cáncer (España), Fundación Mutua Madrileña, and Fundación Sociosanitaria de Castilla-La Mancha
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Genetics ,Adult ,Male ,Cancer Research ,High density ,Single-nucleotide polymorphism ,Biology ,Middle Aged ,Polymorphism, Single Nucleotide ,Meningeal Neoplasms ,Humans ,Female ,Chromosome Deletion ,Meningioma ,Genotyping ,In Situ Hybridization, Fluorescence ,Aged ,Oligonucleotide Array Sequence Analysis ,Signal Transduction - Abstract
Despite recent advances in the identification of the cytogenetic profiles of meningiomas, a significant group of tumors still show normal karyotypes or few chromosomal changes. The authors analyzed the cytogenetic profile of 50 meningiomas using fluorescence in situ hybridization and high-density (500 K) single nucleotide polymorphism (SNP) arrays. Our results confirm that del(22q) (52%) and del(1p) (16%) (common deleted regions: 22q11.21-22q13.3. and 1p31.2-p36.33) are the most frequent alterations. Additionally, recurrent monosomy 14 (8%), del(6q) (10%), del(7p) (10%), and del(19q) (4%) were observed, while copy number patterns consistent with recurrent chromosomal gains, gene amplification, and copy number neutral loss of heterozygosity (cnLOH) were either absent or rare. Based on their overall SNP profiles, meningiomas could be classified into: (i) diploid cases, (ii) meningiomas with a single chromosomal change [e.g., monosomy 22/del(22q)] and (iii) tumors with ≥2 altered chromosomes. In summary, our results confirm and extend on previous observations showing that the most recurrent chromosomal abnormalities in meningiomas correspond to chromosome losses localized in chromosomes 1, 22 and less frequently in chromosomes 6, 7, 14, and 19, while chromosomal gains and cnLOH are restricted to a small proportion of cases. Finally, a set of cancer-associated candidate genes associated with the TP53, MYC, CASP3, HDAC1, and TERT signaling pathways was identified, in cases with coexisting monosomy 14 and del(1p). © 2012 Wiley Periodicals, Inc., Supported by: Consejería de Sanidad, Grant number: 66A/06; Consejería de Educación Junta de Castilla y León (Valladolid, Spain), Grant number: HUS 05A06; Instituto de Salud Carlos III, Ministerio de Ciencia e Innovación-FEDER, Madrid, Spain (Fondo de Investigaciones Sanitarias), Grant numbers: FIS/ FEDER 06/0312, RTICC RD06/0020/0035, RD06/0020/0059; Fundación MM, Grant number: AP87692011; IECSCYL (Fundación Instituto de Estudios Ciencias de la Salud de Castilla y León).
- Published
- 2011
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