130 results on '"Pascal Lecomte"'
Search Results
2. Logistic modeling of summer expression of esca symptoms in tolerant and susceptible cultivars in Bordeaux vineyards
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Pascal Lecomte, Céline Bénétreau, Barka Diarra, Yacine Meziani, Chloé Delmas, and Marc FERMAUD (UMR SAVE 1065)
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epidemiology ,symptomatology ,leaf symptom dynamics ,logistic model ,climate ,Agriculture ,Botany ,QK1-989 - Abstract
The seasonal dynamics of esca leaf symptom development were monitored and modelled over 10 years (from 2004 to 2006, 2012 to 2014, and 2018 to 2021) in eleven vineyards near Bordeaux (France) and on five cultivars, including three susceptible and two tolerant Field observations performed once or twice a week from the end of May to mid-September confirmed i) the evolution over time of esca leaf symptoms, ii) the presence under the bark of a discolored xylem longitudinal stripe with nonfunctional vessels, and iii) a gradual increase in the number of symptomatic plants within each vineyard. Of the three models tested, nonlinear logistic regression was the best fitting curve, showing a clear and systematic progressive sigmoidal pattern of cumulative esca leaf symptom observations regardless of ‘vineyard*year’ situation. Relationships with climatic data confirmed that all periods of symptom expression corresponded to the warmest and driest period of each vegetative season. Examinations of key dates corresponding to four threshold levels of cumulative incidence of leaf symptomatic vines [S1 (first observed symptoms), S10 %, S50 % and S90 %] showed that tolerant cultivars (Merlot noir and Malbec) generally developed leaf symptoms later than susceptible cultivars (Cabernet-Sauvignon, Cabernet franc, and Sauvignon blanc). A variance analysis and a principal component analysis (PCA) confirmed that compared to susceptible cultivars, tolerant cultivars were associated with increased temperature sums above 10 °C from 1st January, reaching the same symptom thresholds S1 and S10 % and with more cumulative rainfall at the S1 stage. Overall, this study reveals the key role of temperature as a triggering factor for esca symptom expression in relation to fungal activity. The results indicate that the S10 % stage can be used as a discriminant variable to separate cultivars according to their susceptibility. Finally, logistic modelling can be used as a descriptive and analytical tool to study the seasonal dynamics of esca.
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- 2024
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3. Xylem water transport is influenced by age and winter pruning characteristics in grapevine (Vitis vinifera)
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Marion Claverie, Pascal Lecomte, Gaël Delorme, Vincent Dumot, Olivier Jacquet, and Hervé Cochard
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grapevine ,pruning ,sap flow ,conductivity ,xylem ,decline ,Agriculture ,Botany ,QK1-989 - Abstract
In order to investigate the effect of age and pruning characteristics on grapevine hydraulic conduction, a study was carried out between 2017 and 2020. Two pruning regimes (respecting or not sap flow pathways) and two vine age levels (older and younger vine plants) were considered and compared on two different vineyard plots located in French north-east Jura region and in south-west Bordeaux one. The assessment of pruning characteristics in relation to sap flow pathway was based on a visual characterization of the external wood aspect of the trunk and arms and consisted of a set of criteria involving the number, size and position of pruning wounds. Sap flow measurements of entire vine plants were carried out using the Xyl’em® tool, as well as an assessment of the necrotized, living and conductive xylem area in the trunks and arms after Phloxine staining. The biomass of the vegetation was also assessed. Results showed that vines pruned without considering the sap flow pathways had a 40-to-50% less conductive sap flow than vines pruned taking into account the sap pathway. No difference was observed with vine age within each pruning regime. However, for the vineyard plot where the amount of conductive xylem area was assessed, older vines that were not pruned to respect the sap pathways showed a smaller area of living wood as well as conductive wood than the older ones pruned to respect the sap flows. The amount of living and conductive areas of these vines was equivalent to that of younger vines pruned to respect sap pathways. These older vines also showed less vegetative biomass. These results show that pruning without taking into account the sap pathways has a negative impact on the conduction of xylem sap pathways in grapevines, both in terms of hydraulic efficiency and quantity of living and conducting tissues. However, the possible consequences of these reductions on grapevine physiological functions still need to be further investigated.
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- 2023
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4. Recovery after curettage of grapevines with esca leaf symptoms
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Pascal LECOMTE, Céline CHOLET, Emilie BRUEZ, Tommaso MARTIGNON, Massimo GIUDICI, Marco SIMONIT, Adeline ALONSO UGAGLIA, Dominique FORGET, Jérôme MIRAMON, Matthieu ARROYO, Denis DUBOURDIEU, Laurence GENY-DENIS, and Patrice REY
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Trunk surgery ,plant health recovery ,Vitis vinifera L. ,white rot ,Botany ,QK1-989 - Abstract
Grapevine curettage was re-introduced in France in the early 2000s, and is important for facilitating recovery of plants from esca disease. This surgical practice involves removal of deadwood of vines with leaf symptoms, focusing on white rot generally observed at the centres of grapevine trunks. Assessment of the efficacy of this practice was initiated in the Bordeaux region in 2014. One ‘Sauvignon Blanc’ vineyard severely affected by esca was initially surveyed in the summer of 2014, to identify and treat vines with esca foliar symptoms. Annually thereafter, from 2014 to 2018, selected vine stocks were curetted. Two other ‘Sauvignon Blanc’ vineyards also displaying high levels of esca damage were added to the study in 2015 and 2016. Curettage treatments ceased in 2018, resulting in 11 trials (vineyard × year combinations). In total, 856 vines (422 curetted and 434 control vines) were then surveyed annually up to 2021, for assessments and comparisons of esca development. At each site, plants with esca symptoms recovered well after curettage: on average 85% of all curetted vines became asymptomatic the year immediately after the treatment. Six years after treatment, for curettage campaigns carried out in 2014 and 2015, more than half of the curetted vines were symptom-free, whereas
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- 2022
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5. Mendelian randomization: estimation of inpatient hospital costs attributable to obesity
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Katherine Dick, John E. Schneider, Andrew Briggs, Pascal Lecomte, Stephane A. Regnier, and Michael Lean
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Mendelian randomization ,Obesity ,Instrumental variables ,Genetics ,Economics ,Healthcare utilization ,Medicine (General) ,R5-920 - Abstract
Abstract Background Mendelian Randomization is a type of instrumental variable (IV) analysis that uses inherited genetic variants as instruments to estimate causal effects attributable to genetic factors. This study aims to estimate the impact of obesity on annual inpatient healthcare costs in the UK using linked data from the UK Biobank and Hospital Episode Statistics (HES). Methods UK Biobank data for 482,127 subjects was linked with HES inpatient admission records, and costs were assigned to episodes of care. A two-stage least squares (TSLS) IV model and a TSLS two-part cost model were compared to a naïve regression of inpatient healthcare costs on body mass index (BMI). Results The naïve analysis of annual cost on continuous BMI predicted an annual cost of £21.61 [95% CI £20.33 – £22.89] greater cost per unit increase in BMI. The TSLS IV model predicted an annual cost of £14.36 [95% CI £0.31 – £28.42] greater cost per unit increase in BMI. Modelled with a binary obesity variable, the naïve analysis predicted that obese subjects incurred £205.53 [95% CI £191.45 – £219.60] greater costs than non-obese subjects. The TSLS model predicted a cost £201.58 [95% CI £4.32 – £398.84] greater for obese subjects compared to non-obese subjects. Conclusions The IV models provide evidence for a causal relationship between obesity and higher inpatient healthcare costs. Compared to the naïve models, the binary IV model found a slightly smaller marginal effect of obesity, and the continuous IV model found a slightly smaller marginal effect of a single unit increase in BMI.
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- 2021
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6. Health-related quality of life in people with predementia Alzheimer’s disease, mild cognitive impairment or dementia measured with preference-based instruments: a systematic literature review
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Filipa Landeiro, Seher Mughal, Katie Walsh, Elsbeth Nye, Jasmine Morton, Harriet Williams, Isaac Ghinai, Yovanna Castro, José Leal, Nia Roberts, Helena Wace, Ron Handels, Pascal Lecomte, Anders Gustavsson, Emilse Roncancio-Diaz, Mark Belger, Gurleen S. Jhuti, Jacoline C. Bouvy, Michele H. Potashman, Antje Tockhorn-Heidenreich, Alastair M. Gray, and on behalf of the ROADMAP consortium
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Dementia ,Alzheimer’s disease ,Quality of life ,Systematic literature review ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Obtaining reliable estimates of the health-related quality of life (HR-QoL) of people with predementia Alzheimer’s disease [AD] (preclinical or prodromal AD), mild cognitive impairment (MCI) and dementia is essential for economic evaluations of related health interventions. Aims To provide an overview of which quality of life instruments are being used to assess HR-QoL in people with predementia AD, MCI or dementia; and, to summarise their reported HR-QoL levels at each stage of the disease and by type of respondent. Methods We systematically searched for and reviewed eligible studies published between January 1990 and the end of April 2017 which reported HR-QoL for people with predementia AD, MCI or dementia. We only included instruments which are preference-based, allowing index scores/utility values to be attached to each health state they describe based on preferences obtained from population surveys. Summary results were presented by respondent type (self or proxy), type of instrument, geographical location and, where possible, stage of disease. Health state utility values derived using the EuroQoL 5-Dimensions (EQ-5D) were meta-analysed by pooling reported results across all studies by disease severity (MCI, mild, mild to moderate, moderate, severe dementia, not specified) and by respondent (person with dementia, carer, general public, not specified), using a fixed-effects approach. Results We identified 61 studies which reported HR-QoL for people with MCI or dementia using preference-based instruments, of which 48 used the EQ-5D. Thirty-six studies reported HR-QoL for mild and/or moderate disease severities, and 12 studies reported utility values for MCI. We found systematic differences between self-rated and proxy-rated HR-QoL, with proxy-rated utility valued being significantly lower in more severe disease states. Conclusions A substantial literature now exists quantifying the impact of dementia on HR-QoL using preference-based measures, giving researchers and modellers a firmer basis on which to select appropriate utility values when estimating the effectiveness and cost-effectiveness of interventions in this area. Further research is required on HR-QoL of people with preclinical and prodromal AD and MCI, possible differences by type of dementia, the effects of comorbidities, study setting and the informal caregiver’s own HR-QoL, including any effect of that on their proxy-ratings.
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- 2020
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7. Health economic modeling for Alzheimer's disease: Expert perspectives
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Filipa Landeiro, Jasmine Morton, Anders Gustavsson, Michele Potashman, Pascal Lecomte, Mark Belger, Robin Thompson, Emilse Roncancio‐Diaz, Gurleen Jhuti, Christopher Butler, Linus Jönsson, Ron Handels, Alastair M. Gray, and the ROADMAP study
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Alzheimer's disease ,costs ,dementia ,disease‐modifying treatment ,economic models ,model structure ,Neurology. Diseases of the nervous system ,RC346-429 ,Geriatrics ,RC952-954.6 - Abstract
Abstract The successful development of an economic model for the evaluation of future Alzheimer's disease (AD) interventions is critical to accurately inform policy makers and payers. As our understanding of AD expands, this becomes an increasingly complex and challenging goal. Advances in diagnostic techniques for AD and the prospect of disease‐modifying treatments raise an urgent need to define specifications for future economic models and to ensure that the necessary data to populate them are available. This Perspective article provides expert opinions from health economists and governmental agency representatives on how future economic models for AD might be structured, validated, and reported. We aim to stimulate much‐needed discussion about the detailed specification of future health economic models for AD.
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- 2022
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8. Prévenir l’esca chez Vitis vinifera en proscrivant les modes de conduite ou les systèmes de taille mutilants
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Pascal Lecomte, Barka Diarra, Mathilde Boisseau, Sandrine Weingartner, and Patrice Rey
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Agriculture (General) ,S1-972 ,Plant culture ,SB1-1110 - Abstract
Afin d’illustrer l’influence des modes de conduite ou des systèmes de taille, sur le développement d’une maladie du bois de la vigne, l’esca, une synthèse a été réalisée à partir de résultats obtenus dans le cadre de deux projets, le CASDAR/CNIV V1303 (2013-2017) et ‘GTDfree’ financé par l’ANR et la Maison Hennessy (2016-2021). Une conclusion majeure est que les modes de conduite extrêmement simplifiés et les systèmes de taille trop sévères sont à proscrire dans le cadre de la prévention et gestion de l’esca, notamment pour les cépages sensibles.
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- 2021
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9. Plant resilience and physiological modifications induced by curettage of Esca-diseased grapevines
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Céline CHOLET, Émilie Bruez, Pascal Lecomte, Audrey Barsacq, Tommaso Martignon, Massimo Giudici, Marco Simonit, Denis Dubourdieu, and Laurence Gény
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curettage ,Esca ,Vitis vinifera L. ,resilience ,yield ,Agriculture ,Botany ,QK1-989 - Abstract
The re-emergence of Grapevine Trunk Diseases (GTDs), mainly Esca, has been observed in most of the world’s vineyards during the last two decades. Development of necrosis in grapevine wood, especially white-rot, is typically associated with Esca-diseased plants. One of the different methods being used in attempts to eradicate GTDs is curettage. This old cultural practice, which consists in surgically removing the necrotic wood, specifically white-rot, retaining only the non-necrotic tissue of Esca-diseased grapevine, is used in some European vineyards (Spain, France, Italy, Portugal), and is being increasingly reintroduced since 10 years ago in France. We, therefore, wanted to study the effect of curettage on vigour, fertility and berry quality, and year after year plant recovery. Our study synthetizes a 3-year experiment on Esca-diseased cv. Sauvignon blanc grapevines curetted in a commercial plot in the Bordeaux region. Asymptomatic control grapevines were compared to Esca-diseased grapevines without curettage (with typical foliar symptoms), and with curetted Esca-diseased grapevines (without foliar symptoms). Even if the curetted grapevines recovered lower vigour and fertility than the control plants, their grape berry quality was comparable, unlike for Esca-diseased grapevines. This cultural practice proved particularly effective in helping Esca-symptomatic grapevines to recover asymptomatic after treatment. Over time, curettage induces the resilience of grapevines, allowing them to recuperate their full physiological functioning, thereby compensating for Esca’s detrimental impact on berry quality.
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- 2021
10. Understanding Esca: watch out for the grafting type!
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Coralie Dewasme, Séverine Mary, Pascal Lecomte, Marc Birebent, Julien Dumercq, and Jean-Philippe Roby
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Agriculture (General) ,S1-972 ,Plant culture ,SB1-1110 - Abstract
Black measles in English, Esca in French, Escha in Italian, Yesca in Spanish, Iska in Greek… This nightmare for winegrowers around the world creates confusion about its development and characteristics. Nevertheless, research progress has been made, and a recent scientific survey addressing the impact of grafting types on foliar symptoms added a new piece to the complex puzzle of understanding this disease. Full cleft grafts, directly made on the plot, have much better results.
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- 2019
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11. Comparison of the Molecular Responses of Tolerant, Susceptible and Highly Susceptible Grapevine Cultivars During Interaction With the Pathogenic Fungus Eutypa lata
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Chloé Cardot, Gaetan Mappa, Sylvain La Camera, Cécile Gaillard, Cécile Vriet, Pascal Lecomte, Gérald Ferrari, and Pierre Coutos-Thévenot
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grape ,eutypa dieback ,Eutypa lata ,cultivar susceptibility ,pathogenesis-related (PR) proteins ,stilbenes ,Plant culture ,SB1-1110 - Abstract
Eutypa lata is the causal agent of eutypa dieback, one of the most destructive grapevine trunk disease that causes severe economic losses in vineyards worldwide. This fungus causes brown sectorial necrosis in wood which affect the vegetative growth. Despite intense research efforts made in the past years, no cure currently exists for this disease. Host responses to eutypa dieback are difficult to address because E. lata is a wood pathogen that causes foliar symptoms several years after infection. With the aim to classify the level of susceptibility of grapevine cultivars to the foliar symptoms caused by E. lata, artificial inoculations of Merlot, Cabernet Sauvignon, and Ugni Blanc were conducted over 3 years. Merlot was the most tolerant cultivar, whereas Ugni Blanc and Cabernet Sauvignon exhibited higher and differential levels of susceptibility. We took advantage of their contrasting phenotypes to explore their defense responses, including the activation of pathogenesis-related (PR) genes, oxylipin and phenylpropanoid pathways and the accumulation of stilbenes. These analyses were carried out using the millicell system that enables the molecular dialogue between E. lata mycelium and grapevine leaves to take place without physical contact. Merlot responded to E. lata by inducing the expression of a large number of defense-related genes. On the contrary, Ugni Blanc failed to activate such defense responses despite being able to perceive the fungus. To gain insight into the role of carbon partitioning in E. lata infected grapevine, we monitored the expression of plant genes involved in sugar transport and cleavage, and measured invertase activities. Our results evidence a coordinated up-regulation of VvHT5 and VvcwINV genes, and a stimulation of the cell wall invertase activity in leaves of Merlot elicited by E. lata, but not in Ugni Blanc. Altogether, this study indicates that the degree of cultivar susceptibility is associated with the activation of host defense responses, including extracellular sucrolytic machinery and hexose uptake during the grapevine/E. lata interaction. Given the role of these activities in governing carbon allocation through the plant, we postulate that the availability of sugar resources for either the host or the fungus is crucial for the outcome of the interaction.
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- 2019
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12. Ecophysiological impacts of Esca, a devastating grapevine trunk disease, on Vitis vinifera L.
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Loris Ouadi, Emilie Bruez, Sylvie Bastien, Jessica Vallance, Pascal Lecomte, Jean-Christophe Domec, and Patrice Rey
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Medicine ,Science - Abstract
Esca is a Grapevine Trunk Disease (GTD) caused by a broad range of taxonomically unrelated fungal pathogens. These attack grapevine wood tissues inducing necroses even in the conductive vascular tissues, thus affecting the vine physiology and potentially leading to plant death. However, the influence of Esca on leaf and whole-plant water transport disruption remains poorly understood. In this paper, a detailed analysis of xylem-related physiological parameters in grapevines that expressed Esca-foliar symptoms was carried out. The experiments were conducted in a vineyard in the Bordeaux region (France) on cv. Cabernet-Sauvignon (Vitis vinifera L.) grapevines, which were monitored for Esca-foliar symptoms over a two-year period. Heat dissipation sap-flow sensors were installed during the summer on grapevines having expressed or not Esca-foliar symptoms. Leaf water potential, stomatal conductance and leaf transpiration were also measured. Physiological monitoring showed that sap flow density and whole-plant transpiration of Esca-infected grapevines decreased significantly a week before the first foliar symptoms appeared. When atmospheric water demand (Vapour Pressure Deficit, VPD) was the highest, both parameters tended to be about twice as low in symptomatic grapevines as in asymptomatic ones. Sap flow density data at the maximum transpiration-time, was systematically 29-30% lower in Esca-infected grapevines compared to control plants before or after the appearance of Esca-foliar symptoms. This trend was observed whatever the temperatures and VPD values measured. In Esca-diseased plants, larger amounts of necrotic wood, mainly white rot, were found in the trunk and cordon of symptomatic grapevines compared to healthy ones, suggesting necroses have an influence in reducing the whole-plant hydraulic capacity. This study reveals that the use of physiological monitoring methods, together with the visual monitoring of foliar symptoms, could prove useful in providing accurate measurements of Esca disease severity.
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- 2019
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13. Esca of grapevine and training practices in France: results of a 10-year survey
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Pascal LECOMTE, Barka DIARRA, Alain CARBONNEAU, Patrice REY, and Christel CHEVRIER
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damage ,grapevine trunk diseases ,pruning ,trellising ,Botany ,QK1-989 - Abstract
Esca is a widespread and damaging grapevine trunk disease in France. A survey was undertaken to identify relevant cultural factors that may influence symptom severity. Preliminary observations in the Aquitaine region confirmed the complex interactions among cultivar, vine training system, and climate, so the study was expanded to the national level to help account for esca in different wine growing regions. Twenty-five vineyard plots were examined. The plots were comparable by pairs, with the same cultivar (or cultivar with similar levels of susceptibility in a few cases), with the same age and similar soil and climatic environments, but with different training or pruning systems. Esca was the predominant trunk disease and prevalence was assessed by visible symptoms on leaves and on wood. Training systems with long arms (or cordons) were generally less affected by the disease than those with short or no arms. Pruning also played a major role, with a trend of less severe symptoms associated with less pruning. The study confirmed that foliar symptoms reveal the presence of the disease, but cannot be considered a reliable indicator of the disease impact in all situations. This study also confirmed: i) that vine training and pruning options may greatly influence the severity of esca, ii) that increasing the length of cordons may minimize the consequences of the wood necroses, and, iii) that simplifications of the woody vine structure (resulting from adoption of modern training and pruning options) may have favoured the development of esca.
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- 2018
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14. Toward Consistent Satellite Calibration and Validation for GEOSS Interoperability.
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Changyong Cao, Stephen G. Ungar, Pascal Lecomte, Nigel P. Fox, Xiaoxiong (Jack) Xiong, Patrice Henry, Christopher Buck, Greg Stenssas, Xiwu Zhan, and Petya K. E. Campbell
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- 2008
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15. Impact of grafting type on Esca foliar symptoms
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Séverine Mary, Coralie Laveau, Pascal Lecomte, Marc Birebent, and Jean-Philippe Roby
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Esca ,foliar symptoms ,graft type ,nurseries ,quality of planting material ,Agriculture ,Botany ,QK1-989 - Abstract
Aim: The aim of the survey was to investigate if the grafting type influences the foliar expression of Esca during summer. Methods and Results: Observations were conducted on plots distributed in two French winegrowing regions (two different climatic regions) with two varieties (Cabernet-Sauvignon in the Bordeaux region and Mourvèdre in Provence). Three grafting types were compared: Omega graft, Whip and Tongue graft, and full cleft graft. For both varieties, we found a significant effect of the type of grafting on the foliar development of Esca symptoms. Full cleft grafted plots showed a significantly lower percentage of Esca foliar symptoms than the other two modalities, which were not significantly different from one another. Concerning Omega grafted plots, a significant difference in the rate of Esca foliar symptoms was highlighted compared to full cleft grafted plots, with a higher rate on Omega grafted plots, but these plots were also younger. Conclusions: The study established, for the first time, the difference between full cleft field grafted plots and Omega and Whip and Tongue grafted plots, revealing a higher incidence of Esca on the latter types of grafting. Significance and impact of the study: The spread of mechanical graft could be one of the factors explaining the increasing incidence of Esca in vineyard.
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- 2017
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16. Fungal community associated with grapevine wood lesions in Lebanon
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Elia Choueiri, Fouad Jreijiri, Paulette Chlela, Valérie Mayet, Gwénaelle Comont, Jean-Michel Liminana, Lizel Mostert, Michael Fischer, and Pascal Lecomte
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Botryosphaeria dieback ,eutypa dieback ,esca ,trunk diseases ,Vitis vinifera ,Agriculture ,Botany ,QK1-989 - Abstract
Aims: To detect and identify the cultivable microorganisms putatively associated with esca disease in representative Lebanese vineyards. Methods and results: Two field surveys were conducted in Lebanon in 2005 and 2007 to study the fungal community associated with grapevine wood lesions. A total of 68 vines showing typical esca symptoms were randomly sampled in 17 vineyards and cross sections were obtained of cordons and trunks. The shape and type of inner necrosis and discoloration were examined and isolations were made from the symptomatic wood. Isolation results showed that inner necrosis and isolated fungi were similar to those previously found elsewhere, namely in Central Europe or Mediterranean countries. Additionally, three methods for numerical evaluation of micro-organisms found were compared. Conclusion: Most fungal pathogens generally associated with grapevine trunk diseases were detected, of which the basidiomycete Fomitiporia mediterranea and species of the ascomycete family Botryosphaeriaceae were the most frequently encountered. Additionally, a large diversity of other wood colonizing micro-organisms was detected. The putative role of some of the obtained micro-organisms in the process of wood degradation related to esca disease is discussed. Significance and impact of the study: This isolation study is presently the most completed that was carried out with grapevine wood samples collected in Lebanon. Besides, it is the first to provide isolation results based on a classification of inner necrosis in five categories and to compare three criteria for numerical evaluation. This study also tends to further highlight that Botryosphaeriaceae species are common wood inhabiting fungi that should be associated with esca.
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- 2014
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17. ERS-2 Scatterometer: Mission Performances and Current Reprocessing Achievements.
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Raffaele Crapolicchio, Giovanna De Chiara, Anis Elyouncha, Pascal Lecomte, Xavier Neyt, Alessandra Paciucci, and Marco Talone
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- 2012
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18. Effect of the inoculum dose of three grapevine trunk pathogens on the infection of artificially inoculated pruning wounds
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Georgina ELENA, Mark SOSNOWSKI, Matthew AYRES, Pascal LECOMTE, Celine BENETREAU, Francesc GARCIA-FIGUERES, and Jordi LUQUE
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Diplodia seriata ,Phaeomoniella chlamydospora ,Eutypa lata ,artificial inoculations ,inoculum doses ,Botany ,QK1-989 - Abstract
This study assessed the infection rates of different spore inoculum doses of the grapevine trunk pathogens Diplodia seriata, Phaeomoniella chlamydospora and Eutypa lata following artificial inoculation of pruning wounds. Potted vines of cv. Tempranillo were inoculated with doses ranging from 10 to 4000 conidia per wound of D. seriata and P. chlamydospora and led to recovery percentages of 10–100% for D. seriata and 16–94% for P. chlamydospora. Eutypa lata, when inoculated onto wounds of vines in a mature vineyard (cv. Shiraz) and on detached canes (cv. Cabernet Sauvignon) with a dose range of 10 to 1000 ascospores per wound, led to recovery percentages of 17–95%. In the field assay, there was no difference in recovery from wounds that were exposed to single or double inoculations with the same total spore dose, or between canes that were harvested 7 or 11 months after inoculation. The results obtained in this study showed significant variability in pathogen recovery between trials, comparable with that reported previously, which suggests that factors such as pathogen virulence, environmental parameters and experimental conditions may influence the infection process. According to this study, in order to obtain optimal recovery percentages of 50–70% for robust evaluation of pruning wound treatments, dose ranges of 100-1000 conidia of D. seriata, 100–2000 conidia of P. chlamydospora, and 100–500 ascospores of E. lata per wound would be required.
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- 2015
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19. Grapevines under drought do not express esca leaf symptoms
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Chloé E. L. Delmas, Pascal Lecomte, Yves Gibon, Jérôme Jolivet, Silvina Dayer, Giovanni Bortolami, Nathalie Ferrer, Cédric Cassan, Gregory A. Gambetta, Elena Farolfi, Santé et agroécologie du vignoble (UMR SAVE), Université de Bordeaux (UB)-Institut des Sciences de la Vigne et du Vin (ISVV)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Ecophysiologie et Génomique Fonctionnelle de la Vigne (UMR EGFV), Biologie du fruit et pathologie (BFP), Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), and French Ministry of Agriculture and Food, FranceAgriMer, Comite National des Interprofessions des Vins a appellation d'origine et a indication geographique within the PHYSIOPATH Project (Program Plan National Deperissement du Vignoble)
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0106 biological sciences ,Agroecosystem ,Stomatal conductance ,Climate change ,Context (language use) ,drought ,Biology ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Stress, Physiological ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,Vitis ,030304 developmental biology ,2. Zero hunger ,Abiotic component ,carbon balance ,0303 health sciences ,Multidisciplinary ,Biotic component ,fungi ,Water ,food and beverages ,vascular disease ,15. Life on land ,Biological Sciences ,Carbon ,Droughts ,Plant Leaves ,[SDV.BV.AP]Life Sciences [q-bio]/Vegetal Biology/Plant breeding ,Agronomy ,chemistry ,plant dieback ,13. Climate action ,Chlorophyll ,abiotic–biotic interactions ,Nonstructural carbohydrate ,010606 plant biology & botany - Abstract
International audience; In the context of climate change, plant mortality is increasing worldwide in both natural and agroecosystems. However, our understanding of the underlying causes is limited by the complex interactions between abiotic and biotic factors and the technical challenges that limit investigations of these interactions. Here, we studied the interaction between two main drivers of mortality, drought and vascular disease (esca), in one of the world’s most economically valuable fruit crops, grapevine. We found that drought totally inhibited esca leaf symptom expression. We disentangled the plant physiological response to the two stresses by quantifying whole-plant water relations (i.e., water potential and stomatal conductance) and carbon balance (i.e., CO 2 assimilation, chlorophyll, and nonstructural carbohydrates). Our results highlight the distinct physiology behind these two stress responses, indicating that esca (and subsequent stomatal conductance decline) does not result from decreases in water potential and generates different gas exchange and nonstructural carbohydrate seasonal dynamics compared to drought.
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- 2021
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20. Prévenir l’esca chez Vitis vinifera en proscrivant les modes de conduite ou les systèmes de taille mutilants
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Patrice Rey, Barka Diarra, Sandrine Weingartner, Mathilde Boisseau, and Pascal Lecomte
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Um den Einfluss verschiedener Erziehungssysteme bzw. Rebschnittmethoden auf die Entwicklung einer Rebstockkrankheit – in diesem Fall Esca - zu veranschaulichen, wurde eine Studie durchgefuhrt, die auf im Rahmen von zwei Projekten erzielen Ergebnisse basiert: CASDAR/ CNIV (2013-2017) und 'GTDfree', finanziert von der ANR und der Maison Hennessy (2016-2021). Eine bedeutende Schlussfolgerung ist, dass im Rahmen der Pravention und des Managements von Esca, insbesondere bei empfindlichen Rebsorten, extrem vereinfachte Erziehungssysteme und ubermasig strenge Rebschnitte vermieden werden sollten.
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- 2021
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21. Seasonal and long-term consequences of esca grapevine disease on stem xylem integrity
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Hervé Cochard, Giovanni Bortolami, Jérôme Pouzoulet, Nathalie Ferrer, Régis Burlett, Santiago Trueba, Laurent J. Lamarque, Chloé E. L. Delmas, Andrew J. King, Gregory A. Gambetta, Elena Farolfi, Marie Marchesseau-Marchal, Sylvain Delzon, Eric Badel, José M. Torres-Ruiz, Pascal Lecomte, Santé et agroécologie du vignoble (UMR SAVE), Université de Bordeaux (UB)-Institut des Sciences de la Vigne et du Vin (ISVV)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Laboratoire de Physique et Physiologie Intégratives de l’Arbre en environnement Fluctuant (PIAF), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Clermont Auvergne (UCA), Biodiversité, Gènes & Communautés (BioGeCo), Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Synchrotron SOLEIL (SSOLEIL), Centre National de la Recherche Scientifique (CNRS), Université du Québec à Trois-Rivières (UQTR), Ecophysiologie et Génomique Fonctionnelle de la Vigne (UMR EGFV), Yale University [New Haven], French Ministry of Agriculture, Agrifood, and Forestry (FranceAgriMer) within the PHYSIOPATH project (program Plan National Deperissement du Vignoble) / 22001150-1506, and ANR-10-EQPX-0016,XYLOFOREST,Plateforme d'Innovation ' Forêt-Bois-Fibre-Biomasse du Futur '(2010)
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0106 biological sciences ,0301 basic medicine ,Vitis vinifera L ,Perennial plant ,Physiology ,Esca ,Plant Science ,Disease ,Biology ,01 natural sciences ,Asymptomatic ,03 medical and health sciences ,Hydraulic conductivity ,Xylem ,medicine ,Vitis ,2. Zero hunger ,Tylose ,Plant Stems ,Vascular disease ,fungi ,Water ,food and beverages ,X-ray microCT ,medicine.disease ,Plant Leaves ,Horticulture ,030104 developmental biology ,hydraulic failure ,plant dieback ,vascular pathogens ,tyloses ,Shoot ,[SDE]Environmental Sciences ,xylem anatomy ,Seasons ,medicine.symptom ,010606 plant biology & botany - Abstract
Hydraulic failure has been extensively studied during drought-induced plant dieback, but its role in plant-pathogen interactions is under debate. During esca, a grapevine (Vitis vinifera) disease, symptomatic leaves are prone to irreversible hydraulic dysfunctions but little is known about the hydraulic integrity of perennial organs over the short- and long-term. We investigated the effects of esca on stem hydraulic integrity in naturally infected plants within a single season and across season(s). We coupled direct (ks) and indirect (kth) hydraulic conductivity measurements, and tylose and vascular pathogen detection with in vivo X-ray microtomography visualizations. Xylem occlusions (tyloses) and subsequent loss of stem hydraulic conductivity (ks) occurred in all shoots with severe symptoms (apoplexy) and in more than 60% of shoots with moderate symptoms (tiger-stripe), with no tyloses in asymptomatic shoots. In vivo stem observations demonstrated that tyloses occurred only when leaf symptoms appeared, and resulted in more than 50% loss of hydraulic conductance in 40% of symptomatic stems, unrelated to symptom age. The impact of esca on xylem integrity was only seasonal, with no long-term impact of disease history. Our study demonstrated how and to what extent a vascular disease such as esca, affecting xylem integrity, could amplify plant mortality through hydraulic failure.
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- 2021
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22. Analyses of the temporal dynamics of fungal communities colonizing the healthy wood tissues of esca leaf-symptomatic and asymptomatic vines.
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Emilie Bruez, Jessica Vallance, Jonathan Gerbore, Pascal Lecomte, Jean-Pierre Da Costa, Lucia Guerin-Dubrana, and Patrice Rey
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Medicine ,Science - Abstract
Esca, a Grapevine Trunk Disease (GTD), is of major concern for viticulture worldwide. Our study compares the fungal communities that inhabit the wood tissues of vines that expressed or not foliar esca-symptoms. The trunk and rootstock tissues were apparently healthy, whether the 10 year-old plants were symptomatic or not. The only difference was in the cordon, which contained white rot, a typical form of esca, in 79% of symptomatic plants. Observations over a period of one year using a fingerprint method, Single Strand Conformation Polymorphism (SSCP), and the ITS-DNA sequencing of cultivable fungi, showed that shifts occurred in the fungal communities colonizing the healthy wood tissues. However, whatever the sampling time, spring, summer, autumn or winter, the fungi colonizing the healthy tissues of asymptomatic or symptomatic plants were not significantly different. Forty-eight genera were isolated, with species of Hypocreaceae and Botryosphaeriaceae being the most abundant species. Diverse fungal assemblages, made up of potentially plant-pathogenic and -protective fungi, colonized these non-necrotic tissues. Some fungi, possibly involved in GTD, inhabited the non-necrotic wood of young plants, but no increase in necrosis areas was observed over the one-year period.
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- 2014
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23. Seasonal and long-term consequences of esca on grapevine stem xylem integrity
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Santiago Trueba, Gregory A. Gambetta, Andrew J. King, Régis Burlett, Nathalie Ferrer, Chloé E. L. Delmas, Jérôme Pouzoulet, Hervé Cochard, Giovanni Bortolami, Elena Farolfi, José M. Torres-Ruiz, M. Marchesseau-Marchal, Pascal Lecomte, Sylvain Delzon, Laurent J. Lamarque, and Eric Badel
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Horticulture ,Tylose ,Pathogen detection ,Perennial plant ,Hydraulic conductivity ,fungi ,food and beverages ,Xylem ,Biology ,Vitis vinifera - Abstract
Hydraulic failure has been extensively studied during drought-induced plant dieback, but its role in plant-pathogen interactions is under debate. During esca, a grapevine (Vitis vinifera) disease, symptomatic leaves are prone to irreversible hydraulic dysfunctions but little is known about the hydraulic integrity of perennial organs over the short- and long-term. We investigated the effects of esca on stem hydraulic integrity in naturally infected plants within a single season and across season(s). We coupled direct (ks) and indirect (kth) hydraulic conductivity measurements, and tylose and vascular pathogen detection with in vivo X-ray microtomography visualizations. We found xylem occlusions (tyloses), and subsequent loss of stemks, in all of the shoots with severe symptoms (apoplexy) and in more than 60% of the shoots with moderate symptoms (tiger-stripe), and no tyloses in shoots that were currently asymptomatic. In vivo stem observations demonstrated that tyloses were observed only when leaf symptoms appeared, and resulted in more than 50% PLC in 40% of symptomatic stems, unrelated to symptom age. The impact of esca on xylem integrity was only seasonal and no long-term impact of disease history was recorded. Our study demonstrated how and to what extent a vascular disease such as esca, affecting xylem integrity, could amplify plant mortality by hydraulic failure.HighlightOur study reveals that esca can critically affect xylem water movement in grapevine perennial organs, by the presence of plant-derived tyloses.
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- 2020
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24. Early Health Technology Assessment during Nonalcoholic Steatohepatitis Drug Development: A Two-Round, Cross-Country, Multicriteria Decision Analysis
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Pascal Lecomte, Aris Angelis, Mark Thursz, Ingolf Schiefke, Panos Kanavos, João C. Bana e Costa, Lawrence Serfaty, Ali Canbay, Vlad Ratziu, Alistair O'Brien, London School of Economics and Political Science (LSE), Imperial College London, CHU Pitié-Salpêtrière [AP-HP], Sorbonne Université (SU)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), University College of London [London] (UCL), Hôpital de Hautepierre [Strasbourg], Otto-von-Guericke University [Magdeburg] (OVGU), and Ruhr University Bochum (RUB)
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early HTA ,Technology Assessment, Biomedical ,Representativeness heuristic ,Decision Support Techniques ,03 medical and health sciences ,0302 clinical medicine ,decision conference ,Non-alcoholic Fatty Liver Disease ,Comparative research ,Health care ,Humans ,comparative research ,030212 general & internal medicine ,Valuation (finance) ,Actuarial science ,business.industry ,030503 health policy & services ,Health Policy ,NASH ,Stakeholder ,Reproducibility of Results ,Health technology ,[SDV.MHEP.HEG]Life Sciences [q-bio]/Human health and pathology/Hépatology and Gastroenterology ,Original Articles ,MCDA ,[INFO.INFO-RO]Computer Science [cs]/Operations Research [cs.RO] ,[SDV.SP]Life Sciences [q-bio]/Pharmaceutical sciences ,Multiple-criteria decision analysis ,drug development ,RM Therapeutics. Pharmacology ,3. Good health ,Value theory ,value assessment ,[SDV.IB]Life Sciences [q-bio]/Bioengineering ,0305 other medical science ,business ,Psychology - Abstract
International audience; Background. The assessment of value along the clinical development of new biopharmaceutical compounds is a challenging task. Complex and uncertain evidence has to be analyzed, considering a multitude of value preferences from different stakeholders. Objective. To investigate the use of multicriteria decision analysis (MCDA) to support decision making during drug development while considering payer and health technology assessment (HTA) value concerns, by applying the Advance Value Framework in nonalcoholic steatohepatitis (NASH) and testing for the consistency of the results. Design. A multiattribute value theory methodology was applied and 2 rounds of decision conferences (DCs) were organized in 3 countries (England, France, and Germany), with the participation of national key experts and stakeholders using the MACBETH questioning protocol and algorithm. A total of 51 health care professionals, patient advocates, and methodologists, including (ex-) committee members or assessors from national HTA bodies, participated in 6 DCs in the study countries. Target Population. NASH patients in fibrosis stages F2 to 3 were considered. Interventions. The value of a hypothetical product profile was assessed against 3 compounds under development using their phase 2 results. Outcome Measures. DC participants' value preferences were elicited involving criteria selection, options scoring, and criteria weighting. Results. Highly consistent valuation rankings were observed in all DCs, always favoring the same compound. Highly consistent rankings of criteria clusters were observed, favoring therapeutic benefit criteria, followed by safety profile and innovation level criteria. Limitations. There was a lack of comparative treatment effects, early evidence on surrogate endpoints was used, and stakeholder representativeness was limited in some DCs. Conclusions. The use of MCDA is promising in supporting early HTA, illustrating high consistency in results across countries and between study rounds.
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- 2020
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25. Mendelian randomization: estimation of inpatient hospital costs attributable to obesity
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Andrew Briggs, Katherine Dick, Pascal Lecomte, John E. Schneider, Michael E. J. Lean, and Stephane A. Regnier
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Medicine (General) ,Healthcare utilization ,Economics ,Instrumental variables ,030204 cardiovascular system & hematology ,03 medical and health sciences ,0302 clinical medicine ,R5-920 ,Mendelian randomization ,medicine ,Genetics ,030212 general & internal medicine ,Obesity ,Estimation ,Health economics ,business.industry ,Health Policy ,Research ,Causal effect ,Instrumental variable ,medicine.disease ,Regression ,business ,Body mass index ,Demography - Abstract
Background Mendelian Randomization is a type of instrumental variable (IV) analysis that uses inherited genetic variants as instruments to estimate causal effects attributable to genetic factors. This study aims to estimate the impact of obesity on annual inpatient healthcare costs in the UK using linked data from the UK Biobank and Hospital Episode Statistics (HES). Methods UK Biobank data for 482,127 subjects was linked with HES inpatient admission records, and costs were assigned to episodes of care. A two-stage least squares (TSLS) IV model and a TSLS two-part cost model were compared to a naïve regression of inpatient healthcare costs on body mass index (BMI). Results The naïve analysis of annual cost on continuous BMI predicted an annual cost of £21.61 [95% CI £20.33 – £22.89] greater cost per unit increase in BMI. The TSLS IV model predicted an annual cost of £14.36 [95% CI £0.31 – £28.42] greater cost per unit increase in BMI. Modelled with a binary obesity variable, the naïve analysis predicted that obese subjects incurred £205.53 [95% CI £191.45 – £219.60] greater costs than non-obese subjects. The TSLS model predicted a cost £201.58 [95% CI £4.32 – £398.84] greater for obese subjects compared to non-obese subjects. Conclusions The IV models provide evidence for a causal relationship between obesity and higher inpatient healthcare costs. Compared to the naïve models, the binary IV model found a slightly smaller marginal effect of obesity, and the continuous IV model found a slightly smaller marginal effect of a single unit increase in BMI.
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- 2020
26. Overview of grapevine trunk diseases in France in the 2000s
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Emilie BRUEZ, Pascal LECOMTE, Jacques GROSMAN, Bruno DOUBLET, Christophe BERTSCH, Florence FONTAINE, Adeline UGAGLIA, Pierre-Louis Teissedre, Jean-Pierre DA COSTA, Lucia GUERIN-DUBRANA, and Patrice REY
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grapevine cultivar ,esca ,eutypa dieback ,black dead arm ,Botany ,QK1-989 - Abstract
The National Grapevine Trunk Disease Survey was conducted in France from 2003 to 2008 to monitor grapevine trunk diseases (GTDs), eutypa dieback and esca/black dead arm (BDA). Data collected from seven regions, 329 vineyards and 12 cultivars were analysed. There were great variations amongst regions in the incidence of GTDs. For esca/BDA, two groups were distinguished: vineyards in Jura and Charentes had greater incidence (93–95%) than those of Bordeaux, Alsace and Bourgogne (54–82%). Incidence increased in Charentes over the 6-year survey, with the highest values being recorded during the last 2 years. For eutypa dieback, all vineyards of Charentes were affected, with 17 to 25% of vines expressing symptoms; for the other regions, 52 to 80% of vineyards were affected, with incidences below 3%. Cultivars Savagnin and Trousseau in Jura were especially affected by esca/BDA. Instead, Ugni Blanc in Charentes was most affected by eutypa dieback. One cultivar could be significantly more affected in one region than in another. The global health status of the vineyards was also investigated. (i) For four regions, 82% (Jura) to 87% (Alsace) of the grapevines were healthy, but this percentage decreased steadily (67%) in Charentes. (ii) Plants infected by GTDs were 32 and 18% in Jura and Charentes respectively, and only 2.9% in the Bourgogne region. (iii) The unproductive plants, i.e. dead, missing, replanted or restored, represented a significant part of the losses (6.6% in Charentes to 9.9% in Jura). The extension of GTDs is discussed with regard to the abiotic and biotic factors that may favour the diseases.
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- 2012
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27. Regression-Based Approaches to Patient-Centered Cost-Effectiveness Analysis
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Daisuke Goto, M. Olson, C. Daniel Mullins, Pascal Lecomte, Yujin Park, Chukwukadibia Udeze, and Ya Chen Tina Shih
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Pharmacology ,Markov transition ,Health economics ,Management science ,business.industry ,Cost-Benefit Analysis ,Health Status ,030503 health policy & services ,Health Policy ,Public Health, Environmental and Occupational Health ,Health services research ,Cost-effectiveness analysis ,Regression ,Health administration ,Clinical trial ,03 medical and health sciences ,0302 clinical medicine ,Risk analysis (engineering) ,Humans ,Regression Analysis ,Medicine ,030212 general & internal medicine ,0305 other medical science ,business ,Patient centered - Abstract
Achieving comprehensive patient centricity in cost-effectiveness analyses (CEAs) requires a statistical approach that accounts for patients' preferences and clinical and demographic characteristics. Increased availability and accessibility of patient-level health-related utility data from clinical trials or observational database provide enhanced opportunities to conduct more patient-centered CEA. Regression-based approaches that incorporate patient-level data hold great promise for enhancing CEAs to be more patient centered; this paper provides guidance regarding two CEA approaches that apply regression-based approaches utilizing patient-level health-related utility and costs data. The first approach utilizes patient-reported preferences to determine patient-specific utility. This approach evaluates how individuals' unique clinical and demographic factors affect their utility and cost levels over the course of treatment. The underlying motivation of this approach is to produce CEA estimates that reflect patient-level utilities and costs while adjusting for socio-demographic and clinical factors to aid patient-centered coverage and treatment decision-making. In the second approach, patient utilities are estimated based on the clinically defined health states through which a patient may transition throughout the course of treatment. While this approach is grounded on the widely used Markov transition model, we refine the model to facilitate an enhancement in conducting regression-based analysis to achieve transparent understanding of differences in utilities and costs across diverse patient populations. We discuss the unique statistical challenges of each approach and describe how these analytical strategies are related to non-regression-based models in health services research.
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- 2017
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28. Actinobacteria Associated with Vineyard Soils of Algeria: Classification, Antifungal Potential Against Grapevine Trunk Pathogens and Plant Growth-Promoting Features
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Akila Berraf-Tebbal, Abdelghani Zitouni, Amine Yekkour, Pascal Lecomte, Atika Meklat, Salim Mokrane, Patrice Rey, Nadjette Djemouai, Affaf Laassami Affaf Laassami, Laboratoire de Biologie des Systèmes Microbiens - LBSM (Alger, Algeria), École normale supérieure - Kouba-Alger (ENS Kouba-Alger), Santé et agroécologie du vignoble (UMR SAVE), and Université de Bordeaux (UB)-Institut des Sciences de la Vigne et du Vin (ISVV)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
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Nocardiopsis ,Maladie de la vigne ,food.ingredient ,Antifungal Agents ,Farms ,Context (language use) ,Applied Microbiology and Biotechnology ,Microbiology ,Streptomyces ,Actinobacteria ,03 medical and health sciences ,food ,Ascomycota ,RNA, Ribosomal, 16S ,Botany ,Vitis ,Actinoplanes ,Promicromonospora ,Soil Microbiology ,030304 developmental biology ,2. Zero hunger ,0303 health sciences ,biology ,030306 microbiology ,Phéoacremonium minimum ,Fungi ,General Medicine ,biology.organism_classification ,16S ribosomal RNA ,Maladie du bois de la vigne ,Saccharopolyspora ,Algérie ,Paeomoniella chlamydospora ,Algeria ,[SDE]Environmental Sciences ,Microbial Interactions - Abstract
Grapevine trunk diseases (GTDs) are among the most destructive diseases of vineyards worldwide, including Algeria. In the fungal complex involved in GTD symptoms, referred as grapevine trunk-pathogens, Paeomoniella chlamydospora and Phaeoacremonium minimum have a determining infecting role as pioneer fungi. Due to the lack of efficiency of conventional disease management practices, a search for alternative strategies, such as biocontrol, is needed. Taking the approach of looking for biocontrol candidates in the environment surrounding the plant, the present study explored actinobacteria diversity within vineyard soils of six grape-producing regions in Algeria. Based on their 16S rRNA gene sequence, identification and phylogenic analysis were performed on the 40 isolates of actinobacteria obtained. Forty percent of strains were attached to Streptomyces, including two evidenced new species, and 32.5% were affiliated to Saccharothrix. The other less represented genera were Actinoplanes, Nocardia, Nocardiopsis, Lentzea, Nonomuraea, Promicromonospora, Saccharopolyspora and Streptosporangium. Screening based on antagonistic and plant growth promotion (PGP) abilities of the strains showed that 47.5% of the isolates exhibited appreciable antagonistic activities against both Pa. chlamydospora and Pm. minimum, with the two best strains being Streptomyces sp. Ms18 and Streptomyces sp. Sb11. Screening for plant growth promoting properties demonstrated that majority of the strains were able to produce indole acetic acid, siderophores, ammonia, ACC deaminase, cellulase and amylase, and fix N2. Through a PGP-traits-based cluster analysis, the most interesting strains were highlighted. Taking into account both antagonistic and PGP properties, Streptomyces sp Sb11 was selected as the most promising candidate for further evaluations of its efficiency in a GTDs context.
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- 2020
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29. Understanding Esca: watch out for the grafting type!
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Séverine Mary, Julien Dumercq, Jean-Philippe Roby, Marc Birebent, Coralie Dewasme, and Pascal Lecomte
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media_common.quotation_subject ,lcsh:SB1-1110 ,Research article ,Art ,lcsh:Agriculture (General) ,lcsh:Plant culture ,lcsh:S1-972 ,Humanities ,media_common - Abstract
Auf Englisch Black measles, auf Franzosisch Esca, auf Italienisch Escha, auf Spanisch Yesca, auf Griechisch Iska… Uber diesen Schrecken der Winzer in aller Welt herrscht viel Verunsicherung bezuglich Eigenschaften und Entwicklung. Allerdings hat die Forschung hier Fortschritte gemacht und eine jungste wissenschaftliche Untersuchung uber die Auswirkungen von Veredelungsmethoden auf Blattsymptome hat dem komplexen Puzzle, den das Wissen uber diese Krankheit darstellt, ein weiteres Teil hinzugefugt. Pfropfveredelungen, die direkt in der Parzelle erfolgen, weisen wesentlich bessere Ergebnisse auf.
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- 2019
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30. Ecophysiological impacts of Esca, a devastating grapevine trunk disease, on Vitis vinifera L
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Jessica Vallance, Loris Ouadi, Emilie Bruez, Jean-Christophe Domec, Patrice Rey, Pascal Lecomte, Sylvie Bastien, Santé et agroécologie du vignoble (UMR SAVE), Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB)-Institut des Sciences de la Vigne et du Vin (ISVV)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro), Interactions Sol Plante Atmosphère (UMR ISPA), and Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)
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0106 biological sciences ,0301 basic medicine ,Leaves ,Vapour Pressure Deficit ,Physiology ,[SDV]Life Sciences [q-bio] ,Sensory Physiology ,Plant Science ,Pathology and Laboratory Medicine ,01 natural sciences ,Medicine and Health Sciences ,Vitis ,Vascular tissue ,Flowering Plants ,Transpiration ,2. Zero hunger ,esca de la vigne ,Multidisciplinary ,Plant Anatomy ,Temperature ,Plant physiology ,food and beverages ,Eukaryota ,Plants ,Wood ,transport xylème ,Horticulture ,Physiological Parameters ,Plant Physiology ,[SDE]Environmental Sciences ,Medicine ,Grapevine ,France ,Seasons ,Research Article ,Vine ,Stomatal conductance ,Science ,Biology ,Vineyard ,03 medical and health sciences ,Necrosis ,vitis vinifera ,Signs and Symptoms ,Diagnostic Medicine ,Xylem ,Stomata ,Plant Diseases ,Water transport ,Organisms ,Fungi ,Biology and Life Sciences ,Water ,Plant Transpiration ,Stem Anatomy ,maladie du bois de la vigne ,Plant Leaves ,030104 developmental biology ,transpiration des feuilles ,010606 plant biology & botany - Abstract
International audience; Esca is a Grapevine Trunk Disease (GTD) caused by a broad range of taxonomically unrelated fungal pathogens. These attack grapevine wood tissues inducing necroses even in the conductive vascular tissues, thus affecting the vine physiology and potentially leading to plant death. However, the influence of Esca on leaf and whole-plant water transport disruption remains poorly understood. In this paper, a detailed analysis of xylem-related physiological parameters in grapevines that expressed Esca-foliar symptoms was carried out. The experiments were conducted in a vineyard in the Bordeaux region (France) on cv. Cabernet-Sauvignon (Vitis vinifera L.) grapevines, which were monitored for Esca-foliar symptoms over a two-year period. Heat dissipation sap-flow sensors were installed during the summer on grapevines having expressed or not Esca-foliar symptoms. Leaf water potential, stomatal conductance and leaf transpiration were also measured. Physiological monitoring showed that sap flow density and whole-plant transpiration of Esca-infected grapevines decreased significantly a week before the first foliar symptoms appeared. When atmospheric water demand (Vapour Pressure Deficit, VPD) was the highest, both parameters tended to be about twice as low in symptomatic grapevines as in asymptomatic ones. Sap flow density data at the maximum transpiration-time, was systematically 29-30% lower in Esca-infected grapevines compared to control plants before or after the appearance of Esca-foliar symptoms. This trend was observed whatever the temperatures and VPD values measured. In Esca-diseased plants, larger amounts of necrotic wood, mainly white rot, were found in the trunk and cordon of symptomatic grapevines compared to healthy ones, suggesting necroses have an influence in reducing the whole-plant hydraulic capacity. This study reveals that the use of physiological monitoring methods, together with the visual monitoring of foliar symptoms, could prove useful in providing accurate measurements of Esca disease severity.
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- 2019
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31. Exploring the hydraulic failure hypothesis of esca leaf symptom formation
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Steven Jansen, Laurent J. Lamarque, Chloé E. L. Delmas, Andrew J. King, Guillaume Charrier, José M. Torres-Ruiz, Pascal Lecomte, Régis Burlett, Frederic Lens, Jérôme Pouzoulet, Hervé Cochard, Giovanni Bortolami, Silvina Dayer, Gregory A. Gambetta, Sylvain Delzon, and Eric Badel
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0106 biological sciences ,Physiology ,Vascular disease ,fungi ,Leaf scorch ,Xylem ,food and beverages ,Plant Science ,Phaeomoniella chlamydospora ,X-Ray Microtomography ,Biology ,medicine.disease ,01 natural sciences ,Air embolism ,Elicitor ,Phaeoacremonium aleophilum ,Plant Leaves ,Horticulture ,Genetics ,medicine ,Vitis ,Pathogen ,Research Articles ,010606 plant biology & botany - Abstract
Vascular pathogens cause disease in a large spectrum of perennial plants, with leaf scorch being one of the most conspicuous symptoms. Esca in grapevine (Vitis vinifera) is a vascular disease with huge negative effects on grape yield and the wine industry. One prominent hypothesis suggests that vascular disease leaf scorch is caused by fungal pathogen-derived elicitors and toxins. Another hypothesis suggests that leaf scorch is caused by hydraulic failure due to air embolism, the pathogen itself, and/or plant-derived tyloses and gels. In this study, we transplanted mature, naturally infected esca symptomatic vines from the field into pots, allowing us to explore xylem integrity in leaves (i.e. leaf midveins and petioles) using synchrotron-based in vivo x-ray microcomputed tomography and light microscopy. Our results demonstrated that symptomatic leaves are not associated with air embolism. In contrast, symptomatic leaves presented significantly more nonfunctional vessels resulting from the presence of nongaseous embolisms (i.e. tyloses and gels) than control leaves, but there was no significant correlation with disease severity. Using quantitative PCR, we determined that two vascular pathogen species associated with esca necrosis in the trunk were not found in leaves where occlusions were observed. Together, these results demonstrate that symptom development is associated with the disruption of vessel integrity and suggest that symptoms are elicited at a distance from the trunk where fungal infections occur. These findings open new perspectives on esca symptom expression where the hydraulic failure and elicitor/toxin hypotheses are not necessarily mutually exclusive.
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- 2019
32. Resource utilisation and costs in predementia and dementia: a systematic review protocol
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Nia Roberts, Jane Wolstenholme, Katie Walsh, Elsbeth Nye, Raphael Wittenberg, Pascal Lecomte, Seher Mughal, Helena Wace, Antje Tockhorn-Heidenreich, Isaac Ghinai, Emilse Roncancio-Diaz, Michele Potashman, Ron Handels, Alastair Gray, and Filipa Landeiro
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Cost-Benefit Analysis ,Best practice ,Geriatric Medicine ,Caregivers/economics ,MEDLINE ,costs ,Risk Assessment ,EconLit ,03 medical and health sciences ,0302 clinical medicine ,Resource (project management) ,systematic review ,Nursing ,Protocol ,Humans ,Medicine ,10. No inequality ,Activity-based costing ,Health Resources/statistics & numerical data ,Cost–benefit analysis ,business.industry ,030503 health policy & services ,OF-ILLNESS ,General Medicine ,Dementia/economics ,Checklist ,3. Good health ,ALZHEIMERS-DISEASE ,Systematic review ,Caregivers ,Research Design ,Health Resources ,Dementia ,resources ,0305 other medical science ,business ,Alzheimer’s disease ,RC0321 Neuroscience. Biological psychiatry. Neuropsychiatry ,030217 neurology & neurosurgery ,Systematic Reviews as Topic - Abstract
IntroductionDementia is the fastest growing major cause of disability globally with a mounting social and financial impact for patients and their families but also to health and social care systems. This review aims to systematically synthesise evidence on the utilisation of resources and costs incurred by patients and their caregivers and by health and social care services across the full spectrum of dementia, from its preceding preclinical stage to end of life. The main drivers of resources used and costs will also be identified.Methods and analysisA systematic literature review was conducted in MEDLINE, EMBASE, CDSR, CENTRAL, DARE, EconLit, CEA Registry, TRIP, NHS EED, SCI, RePEc and OpenGrey between January 2000 and beginning of May 2017. Two reviewers will independently assess each study for inclusion and disagreements will be resolved by a third reviewer. Data will be extracted using a predefined data extraction form following best practice. Study quality will be assessed with the Effective Public Health Practice Project quality assessment tool. The reporting of costing methodology will be assessed using the British Medical Journal checklist. A narrative synthesis of all studies will be presented for resources used and costs incurred, by level of disease severity when available. If feasible, the data will be synthesised using appropriate statistical techniques.Ethics and disseminationIncluded articles will be reviewed for an ethics statement. The findings of the review will be disseminated in a related peer-reviewed journal and presented at conferences. They will also contribute to the work developed in the Real World Outcomes across the Alzheimer’s disease spectrum for better care: multi-modal data access platform (ROADMAP).Trial registration numberCRD42017071413.
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- 2018
33. Impact of grafting type on Esca foliar symptoms
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Jean Philippe Roby, Pascal Lecomte, Coralie Laveau, Séverine Mary, Marc Birebent, Santé et agroécologie du vignoble (UMR SAVE), Université de Bordeaux (UB)-Institut des Sciences de la Vigne et du Vin (ISVV)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), and Ecophysiologie et Génomique Fonctionnelle de la Vigne (UMR EGFV)
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0106 biological sciences ,0301 basic medicine ,Esca ,foliar symptoms ,graft type ,nurseries ,quality of planting material ,Comportement de porte greffe ,Horticulture ,Biology ,01 natural sciences ,Vineyard ,Esca de la vigne ,lcsh:Agriculture ,03 medical and health sciences ,lcsh:Botany ,Botany ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,Whip (tree) ,Graft Type ,2. Zero hunger ,Significant difference ,lcsh:S ,Surface foliaire ,15. Life on land ,Grafting ,lcsh:QK1-989 ,Tongue graft ,Provence ,030104 developmental biology ,surgical procedures, operative ,Bordelais ,010606 plant biology & botany ,Food Science - Abstract
Aim: The aim of the survey was to investigate if the grafting type influences the foliar expression of Esca during summer.Methods and Results: Observations were conducted on plots distributed in two French winegrowing regions (two different climatic regions) with two varieties (Cabernet-Sauvignon in the Bordeaux region and Mourvèdre in Provence). Three grafting types were compared: Omega graft, Whip and Tongue graft, and full cleft graft. For both varieties, we found a significant effect of the type of grafting on the foliar development of Esca symptoms. Full cleft grafted plots showed a significantly lower percentage of Esca foliar symptoms than the other two modalities, which were not significantly different from one another. Concerning Omega grafted plots, a significant difference in the rate of Esca foliar symptoms was highlighted compared to full cleft grafted plots, with a higher rate on Omega grafted plots, but these plots were also younger.Conclusions: The study established, for the first time, the difference between full cleft field grafted plots and Omega and Whip and Tongue grafted plots, revealing a higher incidence of Esca on the latter types of grafting.Significance and impact of the study: The spread of mechanical graft could be one of the factors explaining the increasing incidence of Esca in vineyard.
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- 2017
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34. Fungal community associated with grapevine wood lesions in Lebanon
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Michael Fischer, Paulette Chlela, Elia Choueiri, Gwenaelle Comont, Pascal Lecomte, Valérie Mayet, Lizel Mostert, Jean-Michel Liminana, Fouad Jreijiri, ProdInra, Migration, Lebanese Agricultural Research Institute (LARI), Santé et agroécologie du vignoble (UMR SAVE), Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB)-Institut des Sciences de la Vigne et du Vin (ISVV)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro), Stellenbosch University, and Julius Kühn-Institut (JKI)
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2. Zero hunger ,Veterinary medicine ,biology ,Fomitiporia mediterranea ,biology.plant_disease_cause ,[SDV]Life Sciences [q-bio] ,lcsh:S ,15. Life on land ,Horticulture ,Botryosphaeriaceae ,biology.organism_classification ,eutypa dieback ,Community associated ,lcsh:QK1-989 ,[SDV] Life Sciences [q-bio] ,lcsh:Agriculture ,trunk diseases ,esca ,Vitis vinifera ,lcsh:Botany ,Botany ,Botryosphaeria dieback ,Family Botryosphaeriaceae ,Food Science - Abstract
Aims: To detect and identify the cultivable microorganisms putatively associated with esca disease in representative Lebanese vineyards.Methods and results: Two field surveys were conducted in Lebanon in 2005 and 2007 to study the fungal community associated with grapevine wood lesions. A total of 68 vines showing typical esca symptoms were randomly sampled in 17 vineyards and cross sections were obtained of cordons and trunks. The shape and type of inner necrosis and discoloration were examined and isolations were made from the symptomatic wood. Isolation results showed that inner necrosis and isolated fungi were similar to those previously found elsewhere, namely in Central Europe or Mediterranean countries. Additionally, three methods for numerical evaluation of micro-organisms found were compared.Conclusion: Most fungal pathogens generally associated with grapevine trunk diseases were detected, of which the basidiomycete Fomitiporia mediterranea and species of the ascomycete family Botryosphaeriaceae were the most frequently encountered. Additionally, a large diversity of other wood colonizing micro-organisms was detected. The putative role of some of the obtained micro-organisms in the process of wood degradation related to esca disease is discussed.Significance and impact of the study: This isolation study is presently the most completed that was carried out with grapevine wood samples collected in Lebanon. Besides, it is the first to provide isolation results based on a classification of inner necrosis in five categories and to compare three criteria for numerical evaluation. This study also tends to further highlight that Botryosphaeriaceae species are common wood inhabiting fungi that should be associated with esca.
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- 2014
35. Genetic structure of the fungal grapevine pathogen Eutypa lata from four continents
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Kendra Baumgartner, Renaud Travadon, Mark Sosnowski, Philippe E. Rolshausen, Pascal Lecomte, Jean-Pierre Péros, Walter D. Gubler, and Francois Halleen
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0106 biological sciences ,2. Zero hunger ,0303 health sciences ,Linkage disequilibrium ,Genetic diversity ,education.field_of_study ,Ecology ,Population ,Plant Science ,Horticulture ,Biology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Gene flow ,03 medical and health sciences ,Genetic structure ,Genetics ,Biological dispersal ,Eutypa ,Cosmopolitan distribution ,14. Life underwater ,education ,Agronomy and Crop Science ,030304 developmental biology - Abstract
The generalist ascomycete fungus Eutypa lata causes Eutypa dieback of grapevine (Vitis vinifera) worldwide. To decipher the cosmopolitan distribution of this fungus, the population genetic structure of 17 geographic samples was investigated from four continental regions (Australia, California, Europe and South Africa), based on analysis of 293 isolates genotyped with nine microsatellite markers. High levels of haplotypic richness (R = 0·91–1) and absence of multilocus linkage disequilibrium among loci supported the preponderance of sexual reproduction in all regions examined. Nonetheless, the identification of identical multilocus haplotypes with identical vegetative compatibility groups, in some vineyards in California and South Africa, suggests that asexual dispersal of the fungus among neighbouring plants could be a rare means of disease spread. The greatest levels of allelic richness (A = 4·89–4·97) and gene diversity (H = 0·66–0·69) were found in Europe among geographic samples from coastal areas surrounding the Mediterranean Sea, whereas the lowest genetic diversity was found in South Africa and Australia (A = 2·78–3·74; H = 0·49–0·57). Samples from California, Australia and South Africa, which had lower genetic diversity than those of Europe, were also characterized by demographic disequilibrium and, thus, may represent founding populations of the pathogen. Low but significant levels of genetic differentiation among all samples (DEST = 0·12, P = 0·001; FST = 0·03, P = 0·001) are consistent with historical gene flow preventing differentiation at continental scales. These findings suggest that global, human-mediated spread of the fungus may have resulted in its current global distribution.
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- 2011
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36. Belgian Observational Drug Utilization Study of Pimecrolimus Cream 1% in Routine Daily Practice in Atopic Dermatitis
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Pascal Lecomte, Hugo Boonen, Marc De Backer, Andre Vertruyen, Julien Lambert, Emmanuel Lesaffre, Catherine Paquay, Bert Boyden, and Marie-Anne Morren
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Adult ,Male ,Drug Utilization ,medicine.medical_specialty ,Adolescent ,Dermatology ,Administration, Cutaneous ,Severity of Illness Index ,Drug Administration Schedule ,Tacrolimus ,Dermatitis, Atopic ,Atopy ,Pimecrolimus ,Belgium ,Confidence Intervals ,Humans ,Medicine ,Medical prescription ,Child ,Reimbursement ,Probability ,Dose-Response Relationship, Drug ,Emollients ,business.industry ,Infant ,Atopic dermatitis ,medicine.disease ,Clinical trial ,Treatment Outcome ,Child, Preschool ,Multivariate Analysis ,Quality of Life ,Regression Analysis ,Female ,Observational study ,Human medicine ,business ,Follow-Up Studies ,medicine.drug - Abstract
Background: For reimbursement purposes of pimecrolimus cream 1%, the Belgian authorities asked to document its consumption, its topical corticosteroid-sparing effect and quality of life within the routine clinical practice. Objectives: We aimed to address the 3 queries of the Belgian authorities. Methods: An open-label, observational, multicentre, 1-year study under drug prescription was performed. Results: A total of 416 consecutive patients were enrolled in 49 centres. The mean annual amount of prescribed pimecrolimuscream 1% per patient was 120.8 g (SD = 117.0), with an estimated consumption of 104.4 g (SD = 117.6). The median annual amount prescribed was 90.0 g [interquartile range (IQR) = 45–150] and the estimated consumption 63.6 g (IQR = 32.4–132). Topical corticosteroids had been used before the study in 81.7% of the population. With pimecrolimus cream 1% during the study, 83.3% of the previous corticosteroid users stated less topical corticosteroid use than before and 36% of them did not apply topical corticosteroids at all during the study. The mean improvements compared to baseline in Parents’ Index Quality of Life-Atopic Dermatitis and Quality of Life Index-Atopic Dermatitis scores were 34.5% (SD = 84.3) and 31.2% (SD = 70.8), respectively. The median improvements were 50.0% (IQR = 12.5–85.7%) and 46.4% (IQR = 0.0–85.0%), respectively. Conclusions: In routine practice the consumption of pimecrolimus cream 1% is relatively low, with corticosteroid-sparing effect, improvement in quality of life and good tolerability.
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- 2008
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37. Grapevine pruning systems and cultivars influence the diversity of wood-colonizing fungi
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Kendra Baumgartner, Renaud Travadon, Pascal Lecomte, Patrice Rey, Hernán Ojeda, Daniel P. Lawrence, David Renault, Barka Diarra, Department of Plant Pathology, University of Kentucky, Santé et agroécologie du vignoble (UMR SAVE), Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB)-Institut des Sciences de la Vigne et du Vin (ISVV)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro), Unité expérimentale de Pech-Rouge (PECH ROUGE), Institut National de la Recherche Agronomique (INRA), and United States Department of Agriculture (USDA)
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0106 biological sciences ,0301 basic medicine ,[SDV]Life Sciences [q-bio] ,Biodiversity ,Plant Science ,Biology ,01 natural sciences ,Decomposer ,environmental sampling ,03 medical and health sciences ,Botany ,[SDV.IDA]Life Sciences [q-bio]/Food engineering ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,[SPI.GPROC]Engineering Sciences [physics]/Chemical and Process Engineering ,Cultivar ,Vitis vinifera ,Conformational polymorphism ,Ecology, Evolution, Behavior and Systematics ,biodiversity ,Ecology ,Ecological Modeling ,fungi ,Community structure ,15. Life on land ,030104 developmental biology ,Taxon ,nervous system ,[SDE]Environmental Sciences ,wood decay ,hill numbers ,Pruning ,010606 plant biology & botany - Abstract
International audience; Grapevine wood hosts diverse fungal species, including pathogens that cause grapevine trunk diseases and wood decomposers, with detrimental effects on yields. This study focuses on the effects of two pruning systems, minimal (min-) or spur-pruning, on the community of trunk pathogens and other wood-colonizing fungi in the trunks of two cultivars, Mourvèdre and Syrah. Culture and DNA-based methods were used to describe the fungal communities. In both cultivars, especially Syrah, spur-pruned vines had more wood necrosis than min-pruned vines, and the community of spur-pruned Syrah was distinguished by its single-stranded conformational polymorphism (SSCP) profile. Diversity profiles of all 88 cultivated taxa and canonical correspondence analyses of the 15 most frequently isolated taxa revealed differences in community structure due to pruning system, trunk location, and/or wood type. Greater levels of wood necrosis may be due to the composition of the fungal community rather than to a greater diversity of taxa.
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- 2016
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38. La progresión de la yesca en Francia: factores e hipótesis que pueden explicarla
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Pascal Lecomte, Guillaume Darrieutort, Philippe Pieri, Marc FERMAUD, Patrice Rey, Santé et agroécologie du vignoble (UMR SAVE), Université de Bordeaux (UB)-Institut des Sciences de la Vigne et du Vin (ISVV)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Ecophysiologie et Génomique Fonctionnelle de la Vigne (UMR EGFV), Santé et agroécologie du vignoble (SAVE), Ecophysiologie et Génomique Fonctionnelle de la Vigne (EGFV), ProdInra, Migration, and Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB)-Institut des Sciences de la Vigne et du Vin (ISVV)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro)
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[SDE] Environmental Sciences ,[SDV]Life Sciences [q-bio] ,Maladie Du Bois De La Vigne ,Progression Épidémique ,Symptôme ,Esca De La Vigne ,[SDV] Life Sciences [q-bio] ,Vitis Vinifera ,Pathologie Végétale ,[SDE]Environmental Sciences ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,[SDV.BV] Life Sciences [q-bio]/Vegetal Biology ,Vigne ,France - Abstract
International audience; La Yesca es hoy la enfermedad de la madera la más preocupante en Francia. Su progreso desde el final del siglo XX, incluso antes de la prohibición de arsenito de sodio, fue tal que algunos la han considerado como una “enfermedad emergente”. Después de recordar los principales datos del Observatorio Nacional para evaluar la situación de las principales “Enfermedades de la Madera de la Vid” durante la última década, este artículo sugiere varias hipótesis que pueden explicar la progresión de este síndrome. Se complementa con una sección sobre los síntomas y la dinámica de su aparición, que no había sido revisado durante casi un siglo. Los resultados de las observaciones finas y regulares en viñedo en Francia o en el extranjero, dan lugar a una redefinición de los síntomas de la yesca y conducen a nuevas preguntas. Este texto está inspirado en gran parte de un artículo publicado en 2012 y presentado en una conferencia del AFPP (Asociación Francesa para la Protección de las Plantas).
- Published
- 2015
39. A LITERATURE REVIEW OF STUDY DESIGN ELEMENTS IN COST-EFFECTIVENESS ANALYSES
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C.J. Udeze, Daisuke Goto, M. Olson, C.D. Mullins, K. Downton, Pascal Lecomte, Y. Park, and K.F. Yang
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Risk analysis (engineering) ,Computer science ,Cost effectiveness ,Health Policy ,Public Health, Environmental and Occupational Health ,Design elements and principles - Published
- 2016
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40. Calibration approaches and quality aspects for the ENVISAT Atmospheric-Chemistry instruments
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Dehn A., Thorsten Fehr, Fabrizio Niro, Lidia Saavedra e Miguel, Gilbert Barrot, Heinrich Bovensmann, Miguel Canela, Roland Gessner, Manfred Gottwald, Henri Laur, Pascal Lecomte, Gaetan Perron, and Piera Raspollini
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- 2009
41. Seven years of data quality of the ENVISAT Atmospheric-Chemistry missions: highlights, lessons learned and perspectives
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Niro, Angelika Dehn, Lidia Saavedra de Miguel, Thorsten Fehr, Henri Laur, Pascal Lecomte, Miguel Canela, Roland Gessner, Gaetan Perron, Piera Raspollini, Gilbert Barrot, Heinrich Bovensmann, and Manfred Gottwald
- Abstract
The instrument and products monitoring is an essential tool to efficiently exploit the ESA operational products. The main goal of the monitoring activities is to provide to the science community a reliable and coherent dataset, avoiding that erroneous input data is used for the scientific analysis. The Quality Control (QC) process is based on a day-to-day operational monitoring that allows the timely detection of instrument and product anomalies. In addition, the QC tasks include the long term analysis of instrument and product key quality indicators allowing to assess the instrument performances, to prevent degradation and to drive corrective actions. The value of the QC service for the science user was demonstrated during the operations of ERS and ENVISAT satellites. The QC service will play a crucial role in future ESA missions, not only for the satellite operations, but also for supporting the definition of the products template, of the monitoring baseline and of the Calibration and Validation plan and as a vital source of information to the users.
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- 2009
42. A 1-Year Cost-Effectiveness Model for the Treatment of Chronic Schizophrenia with Acute Exacerbations in Belgium
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Mark Nuijten, G. Nuyts, Marc van Dijk, Pascal Lecomte, Ulf Persson, and Marc De Hert
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Olanzapine ,Pediatrics ,medicine.medical_specialty ,atypical antipsychotic ,Risperidone ,risperidone ,medicine.drug_class ,Cost effectiveness ,business.industry ,Health Policy ,olanzapine ,Public Health, Environmental and Occupational Health ,Atypical antipsychotic ,medicine.disease ,Typical antipsychotic ,Markov model ,schizophrenia ,Schizophrenia ,medicine ,Haloperidol ,Psychiatry ,business ,cost-effectiveness ,Clozapine ,medicine.drug - Abstract
Objective A 1-year semi-Markov model was constructed to simulate the cost-effectiveness of atypical and typical antipsychotic treatments for schizophrenia. Methods The core model comprised nine 6-week cycles and includes events such as survival, response, adverse events, and compliance. The nature, duration, intensity, and timing of adverse events were incorporated. Compliance was modeled as a function of health state, time, and adverse events. Three first-line treatments were considered (risperidone, olanzapine, and haloperidol oral) and the transition probabilities of switching between five different therapies (haloperidol oral, haloperidol depot, risperidone, olanzapine and clozapine) were included. Effectiveness was modeled based on a modified method of TWiST (time without symptoms and toxicity). The direct costs of utilization of medical resources are taken into account, including five different patient care settings, consultations, neuroleptic medication, laboratory tests, and treatment of side-effects. Results This paper reports the methodology used to construct the model and the results obtained when it was applied to the treatment of patients with schizophrenia in the Belgian health care system. Conclusions Over the study period, risperidone and olanzapine were more cost-effective than haloperidol and of the two major atypical drugs, risperidone was the more cost-effective.
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- 2000
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43. A cost-of-illness study of lyme disease in the United States
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Nancy Fox Ray, Edith Maes, and Pascal Lecomte
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Gerontology ,medicine.medical_specialty ,Population ,Psychological intervention ,Spirochaetaceae ,Indirect costs ,Lyme disease ,Cost of Illness ,medicine ,Humans ,Pharmacology (medical) ,Borrelia burgdorferi ,Intensive care medicine ,education ,Pharmacology ,Lyme Disease ,education.field_of_study ,biology ,business.industry ,Public health ,Incidence (epidemiology) ,Health Care Costs ,biology.organism_classification ,medicine.disease ,United States ,business - Abstract
Lyme disease produces a diverse clinical picture that can include serious and potentially debilitating cardiac, neurologic, joint, and skin involvement. It is characterized in three stages--early localized (stage I), early disseminated (stage II), and late disseminated (stage III)--and medical management is highly dependent on the stage at which the patient presents and the physician's awareness of available treatment options. This study was conducted to establish the medical and economic burden of Lyme disease in the overall US population, which included determining its endemicity in high-risk states and counties, describing current treatment patterns, measuring direct and indirect costs, and defining the cost burden by age group (18 years andor =18 years of age). Medical, epidemiologic, and economic data were collected, and an algorithm was developed representing the natural course of Lyme disease and the progress of health states over time following medical intervention. Using an annual mean incidence of 4.73 cases of Lyme disease per 100,000 population in the decision analysis model yielded an expected national expenditure of $2.5 billion (1996 dollars) over 5 years for therapeutic interventions to prevent 55,626 cases of Lyme disease sequelae. This estimate included both direct medical and indirect costs. However, there is evidence of considerable variation in incidence within states. Our findings support development of vaccination strategies for specific target groups.
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- 1998
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44. [Untitled]
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Jean-Pierre Paulin, Eve Billing, and Pascal Lecomte
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PEAR ,biology ,Rosaceae ,Plant Science ,Horticulture ,biology.organism_classification ,Botany ,Fire blight ,Blight ,Cultivar ,Orchard ,Agronomy and Crop Science ,Fruit tree ,Pyrus communis - Abstract
The value of BIS for blossom blight risk assessment was studied from data collected in an experimental orchard in south-west France. Trees observed included mature commercial pear and apple trees and some young trees in experimental plots. There was a weather station in the orchard and beehives were present. Field records included flowering times of the pear and apple cultivars studied (mostly Passe-Crassane and Beurre Hardy, Royal Gala and Golden Delicious) and dates when blossom blight was first seen on each cultivar. Between 1980 and 1991, records of blight were available for 25 cases. In most cases, one or more infection risk (IR) days, as defined for BIS, could be found during bloom. DD13 mean sums (sums of degree days above a mean temperature of 13 °C) gave good guidance on times when early signs of blossom blight were present in 14 cases. There was only a slight divergence from BIS guides in a further five cases. Possible reasons for divergence and for non-fit in the remaining six cases are discussed. It is concluded from this study that BIS should give useful guidance on optimal times for protective spray applications and for timing of searches for signs of early blossom blight in south-west of France. Graphical presentations of data provide additional information.
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- 1998
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45. Occurrence of Botryosphaeriaceae species associated with grapevine dieback in Algeria
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Mohamed Toumi, Cherif Ameur, Messaoud Benchabane, Pascal Lecomte, Amel Guesmi, Faiza Ammad, Othmane Merah, Nesrine Belkacem, Superior Normal School Kouba, Partenaires INRAE, Université de Saâd Dahlab [Blida] (USDB ), University Campus, Université de la Manouba [Tunisie] (UMA), Santé et agroécologie du vignoble (UMR SAVE), Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB)-Institut des Sciences de la Vigne et du Vin (ISVV)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro), Chimie Agro-Industrielle (CAI), Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Ecole nationale supérieure des ingénieurs en arts chimiques et technologiques-Institut National de la Recherche Agronomique (INRA), Université Toulouse III - Paul Sabatier (UT3), and Université Fédérale Toulouse Midi-Pyrénées
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0106 biological sciences ,Diplodia seriata ,botryosphaeria dothidea ,Botryosphaeria dothidea ,algérie ,analyse phylogénétique ,01 natural sciences ,030308 mycology & parasitology ,03 medical and health sciences ,Intergenic region ,vitis vinifera ,Seriata ,pathogenicity test ,[SDV.IDA]Life Sciences [q-bio]/Food engineering ,Botany ,Grapevine trunk diseases,pathogenicity test,phylogenetic analysis ,[SPI.GPROC]Engineering Sciences [physics]/Chemical and Process Engineering ,grapevine trunk diseases ,Internal transcribed spacer ,Ribosomal DNA ,dépérissement de la vigne ,0303 health sciences ,Ecology ,biology ,Inoculation ,phylogenetic analysis ,Forestry ,Botryosphaeriaceae ,analyse comparative ,biology.organism_classification ,adn ribosomique ,diplodia ,nécrose ,010606 plant biology & botany ,Food Science - Abstract
International audience; Grapevine dieback is an increasing problem in grape vineyards in Algeria. We conducted field surveys each spring between 2006 and 2012 to determine the fungal pathogens associated with grapevine decline in various grape-growing regions. We isolated and identified 3 species of Botryosphaeriaceae (Botryosphaeria dothidea, Diplodia seriata, and Neofusicoccum parvum) from infected wood using a combination of morphological and cultural characters, as well as phylogenetic analyses of ribosomal DNA internal transcribed spacer (ITS) regions and fruiting body. We identified 20 isolates of Diplodia seriata, 13 isolates of Botryosphaeria dothidea, and 7 isolates of Neofusicoccum parvum. Inoculation of grapevine plantlets with the 3 Botryosphaeriaceae species produced necrosis and vascular lesions in the wood after a 6-week incubation; Neofusicoccum parvum isolates were the most virulent, followed by D. seriata and B. dothidea. All 3 species were re-isolated from lesions on infected plantlets. Our results represent the first report of a canker disease of grapevine associated with species of the Botryosphaeriaceae in Algeria.
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- 2014
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46. Esca de la vigne, ce que révèlent les symptômes si on les suit dans le temps
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Pascal Lecomte, Guillaume Darrieutort, Jean-Michel Liminana, Gwenaelle Comont, Argiñe Muruamendiaraz, Javier Legorburu, F., Choueiri, E., Jreijiri, F., El Amil, R., Philippe Pieri, Marc FERMAUD, Santé et agroécologie du vignoble (UMR SAVE), Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB)-Institut des Sciences de la Vigne et du Vin (ISVV)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro), Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro), Instituto Vasco de Investigación y Desarrollo Agrario [Derio] (NEIKER), Lebanese Agricultural Research Institute (LARI), Ecophysiologie et Génomique Fonctionnelle de la Vigne (UMR EGFV), Institut National de la Recherche Agronomique (INRA)-Université Sciences et Technologies - Bordeaux 1-Université Victor Segalen - Bordeaux 2-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro), and ProdInra, Migration
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[SDV] Life Sciences [q-bio] ,[SDE] Environmental Sciences ,[SDV]Life Sciences [q-bio] ,[SDE]Environmental Sciences ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,[SDV.BV] Life Sciences [q-bio]/Vegetal Biology - Abstract
National audience; Travail Au cours de la dernière décennie, un suivi précis et régulier du développement des symptômes foliaires caractéristiques de l'esca (tigrés) a été réalisé, principalement en Bordelais mais aussi en Europe et sur le pourtour méditerranéen. Résultats Les résultats permettent de redéfinir les symptôme selon leur aspect, leur gravité et leur évolution. Les éléments nouveaux, par rapport aux descriptions précédentes, sont précisés. L'enquête a révélé que les dommages foliaires d'esca sont très fréquemment associés à un un dommage vasculaire singulier, peu décrit et peu étudié par le passé : une altération du bois externe, de couleur orangée, superficielle, longitudinale, plus ou moins large, située juste sous l'écorce et dans la continuité des symptômes foliaires. A suivre Ces observations soulèvent de nouvelles questions quant à l'étiologie de l'esca. Elles permettent d'envisager des pistes prometteuses de recherche et de lutte, notamment en introduisant le facteur plante dans la compréhension de ce pathosystème complexe, et en matière de gestion des trajets de sève par la taille.
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- 2014
47. Symptomatologie de l’esca. Les enseignements de 10 années d’observations
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Pascal Lecomte, Guillaume Darrieutort, Jean-Michel Liminana, Gwenaelle Comont, Muruamendiaraz, A., Legorburu, F. J., Choueiri, E., Philippe Pieri, Marc FERMAUD, Santé et agroécologie du vignoble (UMR SAVE), Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB)-Institut des Sciences de la Vigne et du Vin (ISVV)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro), Institut des Sciences de la Vigne et du Vin (ISVV), Instituto Vasco de Investigación y Desarrollo Agrario [Derio] (NEIKER), Lebanese Agricultural Research Institute (LARI), Ecophysiologie et Génomique Fonctionnelle de la Vigne (UMR EGFV), Institut National de la Recherche Agronomique (INRA)-Université Sciences et Technologies - Bordeaux 1-Université Victor Segalen - Bordeaux 2-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro), and ProdInra, Migration
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[SDV] Life Sciences [q-bio] ,[SDE] Environmental Sciences ,[SDV]Life Sciences [q-bio] ,[SDE]Environmental Sciences ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,[SDV.BV] Life Sciences [q-bio]/Vegetal Biology - Abstract
National audience; La lutte contre l’esca, maladie de dépérissement de la vigne est devenue une priorité d’action pour la filière viticole. Mais pour pouvoir choisir une méthode appropriée de contrôle, il faut au préalable bien identifier l’étiologie de ce syndrome complexe et cela implique une connaissance précise des symptômes. De leur nature et de leur mode de développement en découlent des enseignements et des pistes prometteuses de recherche ou de lutte. Cet article résume plus de 10 ans d’expérience acquise par le centre INRA de Bordeaux en matière d’observations des symptômes d’esca
- Published
- 2014
48. Analyses of the Temporal Dynamics of Fungal Communities Colonizing the Healthy Wood Tissues of Esca Leaf-Symptomatic and Asymptomatic Vines
- Author
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Patrice Rey, Jessica Vallance, Jean-Pierre Da Costa, Pascal Lecomte, Lucia Guerin-Dubrana, Emilie Bruez, Jonathan Gerbore, Unité Mixte de Recherche en Santé Végétale (INRA/ENITA) (UMRSV), Institut National de la Recherche Agronomique (INRA)-École Nationale d'Ingénieurs des Travaux Agricoles - Bordeaux (ENITAB)-Institut des Sciences de la Vigne et du Vin (ISVV), Laboratoire de l'intégration, du matériau au système (IMS), Université Sciences et Technologies - Bordeaux 1-Institut Polytechnique de Bordeaux-Centre National de la Recherche Scientifique (CNRS), Santé et agroécologie du vignoble (UMR SAVE), Institut National de la Recherche Agronomique (INRA)-Université de Bordeaux (UB)-Institut des Sciences de la Vigne et du Vin (ISVV)-Ecole Nationale Supérieure des Sciences Agronomiques de Bordeaux-Aquitaine (Bordeaux Sciences Agro), Bordeaux Sciences Agro, Regional Council of Aquitaine, French Ministry of Agriculture, Food-processing industry and Forest [CASDAR V906], BIOVITIS, and Unité Mixte de Recherche en Santé Végétale (INRA/ENITA) (UMR SAVE)
- Subjects
0106 biological sciences ,[SDV.SA]Life Sciences [q-bio]/Agricultural sciences ,[SDV]Life Sciences [q-bio] ,Hypocreaceae ,lcsh:Medicine ,Plant Science ,contrôle de maladie ,01 natural sciences ,Vitis ,DNA, Fungal ,lcsh:Science ,0303 health sciences ,Multidisciplinary ,esca de la vigne ,biology ,Microbiota ,food and beverages ,Agriculture ,Biodiversity ,Botryosphaeriaceae ,Wood ,Sampling time ,medicine.symptom ,Rootstock ,Research Article ,Plant Pathogens ,Crops ,Mycology ,Microbiology ,Asymptomatic ,03 medical and health sciences ,Integrated Control ,vitis vinifera ,pcr ,Botany ,medicine ,Plant Diseases ,030304 developmental biology ,lcsh:R ,extraction adn ,Fungi ,Organisms ,Biology and Life Sciences ,Crop Diseases ,Plant Pathology ,15. Life on land ,biology.organism_classification ,maladie du bois de la vigne ,Plant Leaves ,Haplotypes ,White rot ,lcsh:Q ,Pest Control ,Viticulture ,diagnostic foliaire ,010606 plant biology & botany - Abstract
International audience; Esca, a Grapevine Trunk Disease (GTD), is of major concern for viticulture worldwide. Our study compares the fungal communities that inhabit the wood tissues of vines that expressed or not foliar esca-symptoms. The trunk and rootstock tissues were apparently healthy, whether the 10 year-old plants were symptomatic or not. The only difference was in the cordon, which contained white rot, a typical form of esca, in 79% of symptomatic plants. Observations over a period of one year using a fingerprint method, Single Strand Conformation Polymorphism (SSCP), and the ITS-DNA sequencing of cultivable fungi, showed that shifts occurred in the fungal communities colonizing the healthy wood tissues. However, whatever the sampling time, spring, summer, autumn or winter, the fungi colonizing the healthy tissues of asymptomatic or symptomatic plants were not significantly different. Forty-eight genera were isolated, with species of Hypocreaceae and Botryosphaeriaceae being the most abundant species. Diverse fungal assemblages, made up of potentially plant-pathogenic and -protective fungi, colonized these non-necrotic tissues. Some fungi, possibly involved in GTD, inhabited the non-necrotic wood of young plants, but no increase in necrosis areas was observed over the one-year period.
- Published
- 2014
- Full Text
- View/download PDF
49. [Untitled]
- Author
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Charles Manceau, M. Keck, Pascal Lecomte, and Jean-Pierre Paulin
- Subjects
medicine.medical_specialty ,biology ,food and beverages ,Outbreak ,Plant Science ,Horticulture ,Erwinia ,biology.organism_classification ,Microbiology ,law.invention ,Restriction enzyme ,Plasmid ,law ,Molecular genetics ,Fire blight ,medicine ,Agronomy and Crop Science ,Bacteria ,Polymerase chain reaction - Abstract
A collection of 127 strains of Erwinia amylovora, the causative agent of fire blight, was tested by PCR amplification of a fragment of the plasmid pEA29. A variability in the length of the DNA fragment obtained was observed after digestion by MspI and Sau3A restriction enzymes. Strains were distributed into three groups according to the length of the DNA product. Most of the strains analysed were placed into two groups. Thirteen strains were clustered into a third group which was linked with the geographical origin of strains: they were all isolates from recently reported outbreaks of fire blight in Austria and in southern Bavaria in Germany. The variation in the length of the amplified fragment is probably due to an insertion into this fragment.
- Published
- 1997
- Full Text
- View/download PDF
50. A SENSITIVE AND SPECIFIC DETECTION OF ERWINIA AMYLOVORA BASED ON THE ELISA-DASI ENRICHMENT METHOD WITH MONOCLONAL ANTIBODIES
- Author
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María Teresa Gorris, Pascal Lecomte, Pablo Llop, Jean-Pierre Paulin, R. Chartier, Mariano Cambra, and María M. López
- Subjects
Specific detection ,medicine.drug_class ,medicine ,Horticulture ,Biology ,Erwinia ,Monoclonal antibody ,biology.organism_classification ,Microbiology - Published
- 1996
- Full Text
- View/download PDF
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