37 results on '"Smyth, Tim J."'
Search Results
2. Comment. What drives plankton seasonality in a stratifying shelf sea? Some competing and complementary theories
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Atkinson, Angus, Polimene, Luca, Fileman, Elaine S., Widdicombe, Claire E., McEvoy, Andrea J., Smyth, Tim J., Djeghri, Nicolas, Sailley, Sévrine F., and Cornwell, Louise E.
- Published
- 2018
3. Challenges of modeling depth-integrated marine primary productivity over multiple decades: A case study at BATS and HOT
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Saba, Vincent S, Friedrichs, Marjorie A. M, Carr, Mary-Elena, Antoine, David, Armstrong, Robert A, Asanuma, Ichio, Aumont, Olivier, Bates, Nicholas R, Behrenfeld, Michael J, Bennington, Val, Bopp, Laurent, Bruggeman, Jorn, Buitenhuis, Erik T, Church, Matthew J, Ciotti, Aurea M, Doney, Scott C, Dowell, Mark, Dunne, John, Dutkiewicz, Stephanie, Gregg, Watson, Hoepffner, Nicolas, Hyde, Kimberly J. W, Ishizaka, Joji, Kameda, Takahiko, Karl, David M, Lima, Ivan, Lomas, Michael W, Marra, John, McKinley, Galen A, Melin, Frederic, Moore, J. Keith, Morel, Andre, O'Reilly, John, Salihoglu, Baris, Scardi, Michele, Smyth, Tim J, Tang, Shilin, Tjiputra, Jerry, Uitz, Julia, Vichi, Marcello, Waters, Kirk, Westberry, Toby K, and Yool, Andrew
- Subjects
10.1029/2009GB003655 - Abstract
The performance of 36 models (22 ocean color models and 14 biogeochemical ocean circulation models (BOGCMs)) that estimate depth-integrated marine net primary productivity (NPP) was assessed by comparing their output to in situ 14C data at the Bermuda Atlantic Time series Study (BATS) and the Hawaii Ocean Time series (HOT) over nearly two decades. Specifically, skill was assessed based on the models' ability to estimate the observed mean, variability, and trends of NPP. At both sites, more than 90% of the models underestimated mean NPP, with the average bias of the BOGCMs being nearly twice that of the ocean color models. However, the difference in overall skill between the best BOGCM and the best ocean color model at each site was not significant. Between 1989 and 2007, in situ NPP at BATS and HOT increased by an average of nearly 2% per year and was positively correlated to the North Pacific Gyre Oscillation index. The majority of ocean color models produced in situ NPP trends that were closer to the observed trends when chlorophyll-a was derived from high-performance liquid chromatography (HPLC), rather than fluorometric or SeaWiFS data. However, this was a function of time such that average trend magnitude was more accurately estimated over longer time periods. Among BOGCMs, only two individual models successfully produced an increasing NPP trend (one model at each site). We caution against the use of models to assess multiannual changes in NPP over short time periods. Ocean color model estimates of NPP trends could improve if more high quality HPLC chlorophyll-a time series were available.
- Published
- 2010
4. The Western Channel Observatory: a century of oceanographic, chemical and biological data compiled from pelagic and benthic habitats in the Western English Channel
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McEvoy, Andrea J., primary, Atkinson, Angus, additional, Airs, Ruth L., additional, Brittain, Rachel, additional, Brown, Ian, additional, Fileman, Elaine S., additional, Findlay, Helen S., additional, McNeill, Caroline L., additional, Ostle, Clare, additional, Smyth, Tim J., additional, Somerfield, Paul J., additional, Tait, Karen, additional, Tarran, Glen A., additional, Thomas, Simon, additional, Widdicombe, Claire E., additional, Woodward, E. Malcolm S., additional, Beesley, Amanda, additional, Conway, Dave V. P., additional, Fishwick, James, additional, Haines, Hannah, additional, Harris, Carolyn, additional, Harris, Roger, additional, Hélaouët, Pierre, additional, Johns, David, additional, Lindeque, Penelope K., additional, Mesher, Thomas, additional, McQuatters-Gollop, Abigail, additional, Nunes, Joana, additional, Perry, Frances, additional, Queiros, Ana M., additional, Rees, Andrew, additional, Rühl, Saskia, additional, Sims, David, additional, Torres, Ricardo, additional, and Widdicombe, Stephen, additional
- Published
- 2023
- Full Text
- View/download PDF
5. Assessing the uncertainties of model estimates of primary productivity in the tropical Pacific Ocean
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Friedrichs, Marjorie AM, Carr, Mary-Elena, Barber, Richard T, Scardi, Michele, Antoine, David, Armstrong, Robert A, Asanuma, Ichio, Behrenfeld, Michael J, Buitenhuis, Erik T, Chai, Fei, Christian, James R, Ciotti, Aurea M, Doney, Scott C, Dowell, Mark, Dunne, John, Gentili, Bernard, Gregg, Watson, Hoepffner, Nicolas, Ishizaka, Joji, Kameda, Takahiko, Lima, Ivan, Marra, John, Mélin, Frédéric, Moore, J Keith, Morel, André, O'Malley, Robert T, O'Reilly, Jay, Saba, Vincent S, Schmeltz, Marjorie, Smyth, Tim J, Tjiputra, Jerry, Waters, Kirk, Westberry, Toby K, and Winguth, Arne
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Life Below Water ,Primary production ,Modeling ,Remote sensing ,Satellite ocean color ,Statistical analysis ,Tropical Pacific Ocean (15 degrees N to 15 degrees S and 125 degrees E ,to 95 degrees W) ,Oceanography - Abstract
Depth-integrated primary productivity (PP) estimates obtained from satellite ocean color-based models (SatPPMs) and those generated from biogeochemical ocean general circulation models (BOGCMs) represent a key resource for biogeochemical and ecological studies at global as well as regional scales. Calibration and validation of these PP models are not straightforward, however, and comparative studies show large differences between model estimates. The goal of this paper is to compare PP estimates obtained from 30 different models (21 SatPPMs and 9 BOGCMs) to a tropical Pacific PP database consisting of ∼ 1000 14C measurements spanning more than a decade (1983-1996). Primary findings include: skill varied significantly between models, but performance was not a function of model complexity or type (i.e. SatPPM vs. BOGCM); nearly all models underestimated the observed variance of PP, specifically yielding too few low PP (< 0.2 g C m- 2 d- 1) values; more than half of the total root-mean-squared model-data differences associated with the satellite-based PP models might be accounted for by uncertainties in the input variables and/or the PP data; and the tropical Pacific database captures a broad scale shift from low biomass-normalized productivity in the 1980s to higher biomass-normalized productivity in the 1990s, which was not successfully captured by any of the models. This latter result suggests that interdecadal and global changes will be a significant challenge for both SatPPMs and BOGCMs. Finally, average root-mean-squared differences between in situ PP data on the equator at 140°W and PP estimates from the satellite-based productivity models were 58% lower than analogous values computed in a previous PP model comparison 6 years ago. The success of these types of comparison exercises is illustrated by the continual modification and improvement of the participating models and the resulting increase in model skill. © 2008 Elsevier B.V.
- Published
- 2009
6. Evaluating operational AVHRR sea surface temperature data at the coastline using surfers
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Brewin, Robert J.W., de Mora, Lee, Billson, Oliver, Jackson, Thomas, Russell, Paul, Brewin, Thomas G., Shutler, Jamie D., Miller, Peter I., Taylor, Benjamin H., Smyth, Tim J., and Fishwick, James R.
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- 2017
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7. Finale: impact of the ORCHESTRA/ENCORE programmes on Southern Ocean heat and carbon understanding
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Meijers, Andrew J. S., primary, Meredith, Michael P., additional, Shuckburgh, Emily F., additional, Kent, Elizabeth C., additional, Munday, David R., additional, Firing, Yvonne L., additional, King, Brian, additional, Smyth, Tim J., additional, Leng, Melanie J., additional, George Nurser, A. J., additional, Hewitt, Helene T., additional, Povl Abrahamsen, E., additional, Weiss, Alexandra, additional, Yang, Mingxi, additional, Bell, Thomas G., additional, Alexander Brearley, J., additional, Boland, Emma J. D., additional, Jones, Daniel C., additional, Josey, Simon A., additional, Owen, Robyn P., additional, Grist, Jeremy P., additional, Blaker, Adam T., additional, Biri, Stavroula, additional, Yelland, Margaret J., additional, Pimm, Ciara, additional, Zhou, Shenjie, additional, Harle, James, additional, and Cornes, Richard C., additional
- Published
- 2023
- Full Text
- View/download PDF
8. The Western Channel Observatory: a century of physical, chemical and biological data compiled from pelagic and benthic habitats in the western English Channel.
- Author
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McEvoy, Andrea J., Atkinson, Angus, Airs, Ruth L., Brittain, Rachel, Brown, Ian, Fileman, Elaine S., Findlay, Helen S., McNeill, Caroline L., Ostle, Clare, Smyth, Tim J., Somerfield, Paul J., Tait, Karen, Tarran, Glen A., Thomas, Simon, Widdicombe, Claire E., Woodward, E. Malcolm S., Beesley, Amanda, Conway, David V. P., Fishwick, James, and Haines, Hannah
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DINOFLAGELLATES ,PHYTOPLANKTON ,OBSERVATORIES ,HIGH performance liquid chromatography ,FISH larvae ,METADATA ,DATA libraries ,FISH surveys - Abstract
The Western Channel Observatory (WCO) comprises a series of pelagic, benthic and atmospheric sampling sites within 40 km of Plymouth, UK, that have been sampled by the Plymouth institutes on a regular basis since 1903. This longevity of recording and the high frequency of observations provide a unique combination of data; for example temperature data were first collected in 1903, and the reference station L4, where nearly 400 planktonic taxa have been enumerated, has been sampled on a weekly basis since 1988. While the component datasets have been archived, here we provide the first summary database bringing together a wide suite of the observations. This provides monthly average values of some of the key pelagic and benthic measurements for the inshore site L4 (50 ∘ 15.00 ′ N, 4 ∘ 13.02 ′ W; approx. depth 55 m), the offshore site E1 (50 ∘ 02.00 ′ N, 4 ∘ 22.00 ′ W; approx. depth 75 m) and the intermediate L5 site (50 ∘ 10.80 ′ N, 4 ∘ 18.00 ′ W; approx. depth 58 m). In brief, these data include the following: water temperature (from 1903); macronutrients (from 1934); dissolved inorganic carbon and total alkalinity (from 2008); methane and nitrous oxide (from 2011); chlorophyll a (from 1992); high-performance liquid chromatography (HPLC)-derived pigments (from 1999); <20 µm plankton by flow cytometry, including bacteria (8 functional groups from 2007); phytoplankton by microscopy (6 functional groups from 1992); microplankton and mesozooplankton from FlowCam (6 groups from 2012); Noctiluca sp. dinoflagellate (from 1997); mesozooplankton by microscopy (8 groups from 1988); Calanus helgolandicus egg production rates (from 1992); fish larvae from the Young Fish Trawl survey (4 groups from 1924); benthic macrofauna (4 groups from 2008); demersal fish (19 families from 2008); blue shark, Prionace glauca (from 1958); and 16S alpha diversity for sediment and water column (from 2012). These data have varying coverage with respect to time and depth resolution. The metadata tables describe each dataset and provide pointers to the source data and other related Western Channel Observatory datasets and outputs not compiled here. We provide summaries of the main trends in seasonality and some major climate-related shifts that have been revealed over the last century. The data are available from the Data Archive for Seabed Species and Habitats (DASSH): 10.17031/645110fb81749 (McEvoy and Atkinson, 2023). Making these data fully accessible and including units of both abundance and biomass will stimulate a variety of uptakes. These may include uses as an educational resource for projects, for models and budgets, for the analysis of seasonality and long-term change in a coupled benthic–pelagic system, or for supporting UK and north-eastern Atlantic policy and management. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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- View/download PDF
9. Questioning the role of phenology shifts and trophic mismatching in a planktonic food web
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Atkinson, Angus, Harmer, Rachel A., Widdicombe, Claire E., McEvoy, Andrea J., Smyth, Tim J., Cummings, Denise G., Somerfield, Paul J., Maud, Jacqueline L., and McConville, Kristian
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- 2015
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10. Supplementary materials to Finale: Impact of the ORCHESTRA/ENCORE programmes on Southern Ocean heat and carbon understanding
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Meijers, Andrew J. S., Meredith, Michael P., Shuckburgh, Emily F., Kent, Elizabeth C., Munday, David R., Firing, Yvonne L., King, Brian, Smyth, Tim J., Leng, Melanie J., George Nurser, A. J., Hewitt, Helene T., Povl Abrahamsen, E., Weiss, Alexandra, Yang, Mingxi, Bell, Thomas G., Alexander Brearley, J., Boland, Emma J. D., Jones, Daniel C., Josey, Simon A., Owen, Robyn P., Grist, Jeremy P., Blaker, Adam T., Biri, Stavroula, Yelland, Margaret J., Pimm, Ciara, Zhou, Shenjie, Harle, James, and Cornes, Richard C.
- Abstract
Four supplementary figures and one table providing maps of flight paths and aircraft vs ship data comparisons, as well as cruise information
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- 2023
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- View/download PDF
11. Monitoring a Sentinel Species from Satellites: Detecting Emiliania huxleyi in 25 Years of AVHRR Imagery
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Uz, Stephanie Schollaert, Brown, Christopher W., Heidinger, Andrew K., Smyth, Tim J., Murtugudde, Raghu, Qu, John, editor, Powell, Alfred, editor, and Sivakumar, M.V.K., editor
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- 2013
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12. The distribution of mycosporine-like amino acids in phytoplankton across a Southern Ocean transect
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Weiss, Elliot L., primary, Cape, Mattias Rolf, additional, Pan, B. Jack, additional, Vernet, Maria, additional, James, Chase C., additional, Smyth, Tim J., additional, Ha, Sun-Yong, additional, Iriarte, José L., additional, and Mitchell, B. Greg, additional
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- 2022
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13. The Western Channel Observatory: a century of oceanographic, chemical and biological data compiled from pelagic and benthic habitats in the Western English Channel.
- Author
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McEvoy, Andrea J., Atkinson, Angus, Airs, Ruth L., Brittain, Rachel, Brown, Ian, Fileman, Elaine S., Findlay, Helen S., McNeill, Caroline L., Ostle, Clare, Smyth, Tim J., Somerfield, Paul J., Tait, Karen, Tarran, Glen A., Thomas, Simon, Widdicombe, Claire E., Woodward, E. Malcolm S., Beesley, Amanda, Conway, David V. P., Fishwick, James, and Haines, Hannah
- Subjects
OBSERVATORIES ,FISH larvae ,DATA libraries ,FISH surveys ,ZOOPLANKTON ,DINOFLAGELLATES ,WATER temperature ,METADATA - Abstract
The Western Channel Observatory (WCO) comprises a series of pelagic, benthic and atmospheric sampling sites within 40 km of Plymouth UK, which have been sampled by the Plymouth Institutes on a regular basis since 1903. This longevity of recording and the high frequency of observations provide a unique combination of data; for example temperature data were first collected in 1903 and the reference station L4 has been sampled on a weekly basis since 1988 where nearly 400 planktonic taxa have been enumerated. While the component datasets have been archived, here we provide the first summary database bringing together a wide suite of the observations. This provides monthly average values of some of the key pelagic and benthic measurements for the inshore site L4 (50° 15.00' N, 4° 13.02' W approx depth 55 m), the offshore site E1 (50° 02.00' N, 4° 22.00' W approx depth 75 m) and the intermediate L5 site (50° 10.80' N 4° 18.00' W approx depth 58 m. In brief, the data include: water temperature (from 1903); macronutrients (from 1934); dissolved inorganic carbon and total alkalinity (from 2008); methane and nitrous oxide (from 2011); chlorophyll a (from 1992); HPLC-derived pigments (from 1999); <20 µm plankton by flow cytometry including bacteria (8 functional groups from 2007); phytoplankton by microscopy (6 functional groups from 1992); microplankton and mesozooplankton from FlowCam (6 groups from 2012), Noctiluca sp. dinoflagellate (from 1997); mesozooplankton by microscopy (8 groups from 1988); Calanus helgolandicus egg production rates (from 1992); fish larvae from Young Fish Trawl survey (4 groups from 1924); benthic macrofauna (4 groups from 2008); demersal fish (19 families from 2008); blue shark, Prionace glauca (from 1958); 16S alpha diversity for sediment and water column (from 2012). These data have varying coverage in time and depth resolution. The metadata tables describe each data set, provide pointers to the source data and other related Western Channel Observatory data sets and outputs not compiled here. We provide summaries of the main trends in seasonality and some major, climate related shifts that have been revealed over the last century. The data are available from Data Archive for Seabed Species and Habitats (DASSH) via the link http://doi.org/10.17031/645110fb81749 (McEvoy and Atkinson, 2023). Making the data fully accessible and including units of both abundance and biomass will stimulate a variety of uptakes. These may include uses as an educational resource for projects, for models and budgets or for analysis of seasonality and long-term change in a coupled benthic-pelagic system and for supporting UK and Northeast Atlantic policy and management. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
14. Distribution of Mycosporine-Like Amino Acids Along a Surface Water Meridional Transect of the Atlantic
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Llewellyn, Carole A., White, Daniel A., Martinez-Vincente, Victor, Tarran, Glen, and Smyth, Tim J.
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- 2012
15. Pulses in the eastern margin current and warmer water off the north west European shelf linked to North Sea ecosystem changes
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Reid, Philip C., Holliday, N. Penny, and Smyth, Tim J.
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- 2001
16. Increasing nutrient stress reduces the efficiency of energy transfer through planktonic size spectra
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Atkinson, Angus, Lilley, Martin K.S., Hirst, Andrew G., McEvoy, Andrea J., Tarran, Glen A., Widdicombe, Claire, Fileman, Elaine S., Woodward, E. Malcolm S., Schmidt, Katrin, Smyth, Tim J., Somerfield, Paul J., Atkinson, Angus, Lilley, Martin K.S., Hirst, Andrew G., McEvoy, Andrea J., Tarran, Glen A., Widdicombe, Claire, Fileman, Elaine S., Woodward, E. Malcolm S., Schmidt, Katrin, Smyth, Tim J., and Somerfield, Paul J.
- Abstract
Size-spectral approaches quantify the efficiency of energy transfer through food webs, but theory and field studies disagree over how changes in temperature, nutrients, and extreme weather impact on this efficiency. We address this at two scales: via 6 years of weekly sampling of the plankton size spectrum at the Plymouth L4 shelf sea site, and via a new, global-scale, meta-analysis of aquatic size spectra. The time series showed that with summertime nutrient starvation, the energy transfer efficiency from picoplankton to macroplankton decreased (i.e., steepening slopes of the size spectra). This reflected increasing dominance by small cells and their microbial consumers. The extreme storms in winter 2013/2014 caused high metazoan mortality, steep size-spectral slopes, and reduced plankton biomass. However, recovery was within months, demonstrating an inbuilt resilience of the system. Both L4 and our meta-analysis showed steep slopes of normalized size spectra (median −1.11). This reflects much lower values, either of trophic transfer efficiency (3.5%) or predator–prey mass ratio (569), compared to commonly quoted values. Results from the meta-analysis further showed that to represent energy transfer faithfully, size spectra are best constructed in units of carbon mass and not biovolume, and span a mass range of > 107. When this range is covered, both the meta-analysis and time series show a dome-shaped relationship between spectral slopes and plankton biomass, with steepening slopes under increasingly oligotrophic and eutrophic conditions. This suggests that ocean warming could decrease the efficiency of energy transfer through pelagic food webs via indirect effects of increasing stratification and nutrient starvation.
- Published
- 2021
17. Increasing nutrient stress reduces the efficiency of energy transfer through planktonic size spectra
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Atkinson, Angus, primary, Lilley, Martin K.S., additional, Hirst, Andrew G., additional, McEvoy, Andrea J., additional, Tarran, Glen A., additional, Widdicombe, Claire, additional, Fileman, Elaine S., additional, Woodward, E. Malcolm S., additional, Schmidt, Katrin, additional, Smyth, Tim J., additional, and Somerfield, Paul J., additional
- Published
- 2020
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- View/download PDF
18. Increasing picocyanobacteria success in shelf waters contributes to long‐term food web degradation
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Schmidt, Katrin, primary, Birchill, Antony J., additional, Atkinson, Angus, additional, Brewin, Robert J. W., additional, Clark, James R., additional, Hickman, Anna E., additional, Johns, David G., additional, Lohan, Maeve C., additional, Milne, Angela, additional, Pardo, Silvia, additional, Polimene, Luca, additional, Smyth, Tim J., additional, Tarran, Glen A., additional, Widdicombe, Claire E., additional, Woodward, E. Malcolm S., additional, and Ussher, Simon J., additional
- Published
- 2020
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19. SST Dynamics at Different Scales: Evaluating the Oceanographic Model Resolution Skill to Represent SST Processes in the Southern Ocean
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Skákala, Jozef, Smyth, Tim J., Torres, Ricardo, Buckingham, Christian E., Brearley, Alexander, Hyder, Pat, Coward, Andrew C., Skákala, Jozef, Smyth, Tim J., Torres, Ricardo, Buckingham, Christian E., Brearley, Alexander, Hyder, Pat, and Coward, Andrew C.
- Abstract
In this study we demonstrate the many strengths of scale analysis: we use it to evaluate the Nucleus for European Modelling of the Ocean model skill in representing sea surface temperature (SST) in the Southern Ocean by comparing three model resolutions: 1/12°, 1/4°, and 1°. We show that while 4–5 times resolution scale is sufficient for each model resolution to reproduce the magnitude of satellite Earth Observation (EO) SST spatial variability to within ±10%, the representation of ∼100-km SST variability patterns is substantially (e.g., ∼50% at 750 km) improved by increasing model resolution from 1° to 1/12°. We also analyzed the dominant scales of the SST model input drivers (short-wave radiation, air-sea heat fluxes, wind stress components, wind stress curl, and bathymetry) variability with the purpose of determining the optimal SST model input driver resolution. The SST magnitude of variability is shown to scale with two power law regimes separated by a scaling break at ∼200-km scale. The analysis of the spatial and temporal scales of dominant SST driver impact helps to interpret this scaling break as a separation between two different dynamical regimes: the (relatively) fast SST dynamics below ∼200 km governed by eddies, fronts, Ekman upwelling, and air-sea heat exchange, while above ∼200 km the SST variability is dominated by long-term (seasonal and supraseasonal) modes and the SST geography.
- Published
- 2019
20. SST Dynamics at Different Scales: Evaluating the Oceanographic Model Resolution Skill to Represent SST Processes in the Southern Ocean
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Skákala, Jozef, primary, Smyth, Tim J., additional, Torres, Ricardo, additional, Buckingham, Christian E., additional, Brearley, Alexander, additional, Hyder, Pat, additional, and Coward, Andrew C., additional
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- 2019
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21. Factors associated with waiting time for surgery
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Clover, Kerrie A., Dobbins, Timothy A., Smyth, Tim J., and Sanson-Fisher, Rob W.
- Subjects
Australia -- Social policy ,Hospitals -- Waiting lists ,Surgery -- Social aspects ,Health - Abstract
Researchers conducted a study to explore the factors linked with waiting times for surgery in Australian public hospitals. Participants included 691 adult patients entering a computerized booking list between 16 and 22 Nov 1994. Patients were interviewed and followed up over a period of 18 months. Their results revealed that surgical specialty, urgency rating, employment status, and health insurance status were directly associated with wafting time.
- Published
- 1998
22. Remote sensing of sea surface temperature and chlorophyll during Lagrangian experiments at the Iberian margin
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Smyth, Tim J., Miller, Peter I., Groom, Steve B., and Lavender, Samantha J.
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- 2001
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23. The Atlantic Meridional Transect programme (1995–2016) [Preface]
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Rees, Andrew P., Nightingale, Philip D., Poulton, Alex J., Smyth, Tim J., Tarran, Glen A., Tilstone, Gavin H., Rees, Andrew P., Nightingale, Philip D., Poulton, Alex J., Smyth, Tim J., Tarran, Glen A., and Tilstone, Gavin H.
- Published
- 2017
24. The Atlantic Meridional Transect programme (1995–2016)
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Rees, Andrew P., primary, Nightingale, Philip D., additional, Poulton, Alex J., additional, Smyth, Tim J., additional, Tarran, Glen A., additional, and Tilstone, Gavin H., additional
- Published
- 2017
- Full Text
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25. Autonomous marine hyperspectral radiometers for determining solar irradiances and aerosol optical properties
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Wood, John, primary, Smyth, Tim J., additional, and Estellés, Victor, additional
- Published
- 2017
- Full Text
- View/download PDF
26. Ocean Net Heat Flux Influences Seasonal to Interannual Patterns of Plankton Abundance
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Smyth, Tim J. and Allen, Icarus
- Abstract
Changes in the net heat flux (NHF) into the ocean have profound impacts on global climate. We analyse a long-term plankton time-series and show that the NHF is a critical indicator of ecosystem dynamics. We show that phytoplankton abundance and diversity patterns are tightly bounded by the switches between negative and positive NHF over an annual cycle. Zooplankton increase before the transition to positive NHF in the spring but are constrained by the negative NHF switch in autumn. By contrast bacterial diversity is decoupled from either NHF switch, but is inversely correlated with the magnitude of the NHF. We show that the NHF is a robust mechanistic tool for predicting climate change indicators such as spring phytoplankton bloom timing and length of the growing season.
- Published
- 2014
27. An assessment of phytoplankton primary productivity in the Arctic Ocean from satellite ocean color/in situ chlorophyll-a-based models
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Lee, Younjoo J., Matrai, Patricia A., Friedrichs, Marjorie A. M., Saba, Vincent S., Antoine, David, Ardyna, Mathieu, Asanuma, Ichio, Babin, Marcel, Bélanger, Simon, Benoît-Gagné, Maxime, Devred, Emmanuel, Fernández-Méndez, Mar, Gentili, Bernard, Hirawake, Toru, Kang, Sung-Ho, Kameda, Takahiko, Katlein, Christian, Lee, Sang H., Lee, Zhongping, Mélin, Frédéric, Scardi, Michele, Smyth, Tim J., Tang, Shilin, Turpie, Kevin R., Waters, Kirk J., Westberry, Toby K., Lee, Younjoo J., Matrai, Patricia A., Friedrichs, Marjorie A. M., Saba, Vincent S., Antoine, David, Ardyna, Mathieu, Asanuma, Ichio, Babin, Marcel, Bélanger, Simon, Benoît-Gagné, Maxime, Devred, Emmanuel, Fernández-Méndez, Mar, Gentili, Bernard, Hirawake, Toru, Kang, Sung-Ho, Kameda, Takahiko, Katlein, Christian, Lee, Sang H., Lee, Zhongping, Mélin, Frédéric, Scardi, Michele, Smyth, Tim J., Tang, Shilin, Turpie, Kevin R., Waters, Kirk J., and Westberry, Toby K.
- Abstract
We investigated 32 net primary productivity (NPP) models by assessing skills to reproduce integrated NPP in the Arctic Ocean. The models were provided with two sources each of surface chlorophyll-a concentration (chlorophyll), photosynthetically available radiation (PAR), sea surface temperature (SST), and mixed-layer depth (MLD). The models were most sensitive to uncertainties in surface chlorophyll, generally performing better with in situ chlorophyll than with satellite-derived values. They were much less sensitive to uncertainties in PAR, SST, and MLD, possibly due to relatively narrow ranges of input data and/or relatively little difference between input data sources. Regardless of type or complexity, most of the models were not able to fully reproduce the variability of in situ NPP, whereas some of them exhibited almost no bias (i.e., reproduced the mean of in situ NPP). The models performed relatively well in low-productivity seasons as well as in sea ice-covered/deep-water regions. Depth-resolved models correlated more with in situ NPP than other model types, but had a greater tendency to overestimate mean NPP whereas absorption-based models exhibited the lowest bias associated with weaker correlation. The models performed better when a subsurface chlorophyll-a maximum (SCM) was absent. As a group, the models overestimated mean NPP, however this was partly offset by some models underestimating NPP when a SCM was present. Our study suggests that NPP models need to be carefully tuned for the Arctic Ocean because most of the models performing relatively well were those that used Arctic-relevant parameters. This article is protected by copyright. All rights reserved.
- Published
- 2015
28. Challenges of modeling depth-integrated marine primary productivity over multiple decades : a case study at BATS and HOT
- Author
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Saba, Vincent S., Friedrichs, Marjorie A. M., Carr, Mary-Elena, Antoine, David, Armstrong, Robert A., Asanuma, Ichio, Aumont, Olivier, Bates, Nicholas R., Behrenfeld, Michael J., Bennington, Val, Bopp, Laurent, Bruggeman, Jorn, Buitenhuis, Erik T., Church, Matthew J., Ciotti, Aurea M., Doney, Scott C., Dowell, Mark, Dunne, John P., Dutkiewicz, Stephanie, Gregg, Watson, Hoepffner, Nicolas, Hyde, Kimberly J. W., Ishizaka, Joji, Kameda, Takahiko, Karl, David M., Lima, Ivan, Lomas, Michael W., Marra, John, Mckinley, Galen A., Melin, Frédéric, Moore, J. Keith, Morel, André, O'Reilly, John, Salihoglu, Baris, Scardi, Michele, Smyth, Tim J., Tang, Shilin L., Tjiputra, Jerry, Uitz, Julia, Vichi, Marcello, Waters, Kirk, Westberry, Toby K., Yool, Andrew, Laboratoire d'océanographie de Villefranche (LOV), Observatoire océanologique de Villefranche-sur-mer (OOVM), Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de physique des océans (LPO), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS), Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette] (LSCE), Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ), Plymouth Marine Laboratory (PML), Plymouth Marine Laboratory, Scripps Institution of Oceanography (SIO), University of California [San Diego] (UC San Diego), University of California-University of California, National Oceanography Centre [Southampton] (NOC), University of Southampton, Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Scripps Institution of Oceanography (SIO - UC San Diego), and University of California (UC)-University of California (UC)
- Subjects
Settore BIO/07 ,interannual variability ,time-series ,sargasso sea ,oceanographic conditions ,generalized-model ,multidecadal climate forcing ,ocean primary production ,satellite chlorophyll ,marine primary productivity models ,BATS HOT trends ,skill assessment ,north pacific-ocean ,Physical Sciences and Mathematics ,10.1029/2009GB003655 ,[SDU.STU.OC]Sciences of the Universe [physics]/Earth Sciences/Oceanography ,atlantic subtropical gyre - Abstract
The performance of 36 models (22 ocean color models and 14 biogeochemical ocean circulation models (BOGCMs)) that estimate depth-integrated marine net primary productivity (NPP) was assessed by comparing their output to in situ 14C data at the Bermuda Atlantic Time series Study (BATS) and the Hawaii Ocean Time series (HOT) over nearly two decades. Specifically, skill was assessed based on the models' ability to estimate the observed mean, variability, and trends of NPP. At both sites, more than 90% of the models underestimated mean NPP, with the average bias of the BOGCMs being nearly twice that of the ocean color models. However, the difference in overall skill between the best BOGCM and the best ocean color model at each site was not significant. Between 1989 and 2007, in situ NPP at BATS and HOT increased by an average of nearly 2% per year and was positively correlated to the North Pacific Gyre Oscillation index. The majority of ocean color models produced in situ NPP trends that were closer to the observed trends when chlorophyll-a was derived from high-performance liquid chromatography (HPLC), rather than fluorometric or SeaWiFS data. However, this was a function of time such that average trend magnitude was more accurately estimated over longer time periods. Among BOGCMs, only two individual models successfully produced an increasing NPP trend (one model at each site). We caution against the use of models to assess multiannual changes in NPP over short time periods. Ocean color model estimates of NPP trends could improve if more high quality HPLC chlorophyll-a time series were available. © 2010 by the American Geophysical Union.
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- 2010
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29. An assessment of phytoplankton primary productivity in the Arctic Ocean from satellite ocean color/in situ chlorophyll‐a based models
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Lee, Younjoo J., primary, Matrai, Patricia A., additional, Friedrichs, Marjorie A. M., additional, Saba, Vincent S., additional, Antoine, David, additional, Ardyna, Mathieu, additional, Asanuma, Ichio, additional, Babin, Marcel, additional, Bélanger, Simon, additional, Benoît‐Gagné, Maxime, additional, Devred, Emmanuel, additional, Fernández‐Méndez, Mar, additional, Gentili, Bernard, additional, Hirawake, Toru, additional, Kang, Sung‐Ho, additional, Kameda, Takahiko, additional, Katlein, Christian, additional, Lee, Sang H., additional, Lee, Zhongping, additional, Mélin, Frédéric, additional, Scardi, Michele, additional, Smyth, Tim J., additional, Tang, Shilin, additional, Turpie, Kevin R., additional, Waters, Kirk J., additional, and Westberry, Toby K., additional
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- 2015
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30. Ocean Net Heat Flux Influences Seasonal to Interannual Patterns of Plankton Abundance
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Smyth, Tim J., primary, Allen, Icarus, additional, Atkinson, Angus, additional, Bruun, John T., additional, Harmer, Rachel A., additional, Pingree, Robin D., additional, Widdicombe, Claire E., additional, and Somerfield, Paul J., additional
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- 2014
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31. The seasonal structure of microbial communities in the Western English Channel
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Gilbert, Jack A., Field, Dawn, Swift, Paul, Newbold, Lindsay K., Oliver, Anna E., Smyth, Tim J., Somerfield, Paul J., Huse, Susan M., Joint, Ian, Gilbert, Jack A., Field, Dawn, Swift, Paul, Newbold, Lindsay K., Oliver, Anna E., Smyth, Tim J., Somerfield, Paul J., Huse, Susan M., and Joint, Ian
- Abstract
Author Posting. © The Author(s), 2009. This is the author's version of the work. It is posted here by permission of Blackwell for personal use, not for redistribution. The definitive version was published in Environmental Microbiology 11 (2009): 3132-3139, doi:10.1111/j.1462-2920.2009.02017.x., Very few marine microbial communities are well characterized even with the weight of research effort presently devoted to it. Only a small proportion of this effort has been aimed at investigating temporal community structure. Here we present the first report of the application of high-throughput pyrosequencing to investigate intra-annual bacterial community structure. Microbial diversity was determined for 12 time points at the surface of the L4 sampling site in the Western English Channel. This was performed over 11 months during 2007. A total of 182,560 sequences from the V6 hyper-variable region of the small-subunit ribosomal RNA gene (16S rRNA) were obtained; there were between 11,327 and 17,339 reads per sample. Approximately 7000 genera were identified, with one in every 25 reads being attributed to a new genus; yet this level of sampling far from exhausted the total diversity present at any one time point. The total data set contained 17,673 unique sequences. Only 93 (0.5%) were found at all time-points, yet these few lineages comprised 50% of the total reads sequenced. The most abundant phylum was Proteobacteria (50% of all sequenced reads), while the SAR11 clade comprised 21% of the ubiquitous reads and ~12 % of the total sequenced reads. In contrast, 78% of all OTUs were only found at one time-point and 67% were only found once, evidence of a large and transient rare assemblage. This time-series shows evidence of seasonally structured community diversity. There is also evidence for seasonal succession, primarily reflecting changes among dominant taxa. These changes in structure were significantly correlated to a combination of temperature, phosphate and silicate concentrations., This project was funded in part through the International Census of Marine Microbes 2007 funding initiative and by the UK Natural Environment Research Council through its Oceans 2025 programme
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- 2010
32. Maritime Aerosol Network as a component of Aerosol Robotic Network
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Smirnov, A., Holben, B. N., Slutsker, I., Giles, D. M., McClain, Charles R., Eck, T. F., Sakerin, S. M., Macke, A., Croot, Peter L., Zibordi, G., Quinn, P. K., Sciare, J., Kinne, S., Harvey, Mike J., Smyth, Tim J., Piketh, S., Zielinski, T., Proshutinsky, Andrey, Goes, Joachim I., Nelson, Norman B., Larouche, P., Radionov, V. F., Goloub, P., Moorthy, K. Krishna, Matarrese, R., Robertson, E. J., Jourdin, F., Smirnov, A., Holben, B. N., Slutsker, I., Giles, D. M., McClain, Charles R., Eck, T. F., Sakerin, S. M., Macke, A., Croot, Peter L., Zibordi, G., Quinn, P. K., Sciare, J., Kinne, S., Harvey, Mike J., Smyth, Tim J., Piketh, S., Zielinski, T., Proshutinsky, Andrey, Goes, Joachim I., Nelson, Norman B., Larouche, P., Radionov, V. F., Goloub, P., Moorthy, K. Krishna, Matarrese, R., Robertson, E. J., and Jourdin, F.
- Abstract
Author Posting. © American Geophysical Union, 2009. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 114 (2009): D06204, doi:10.1029/2008JD011257., The paper presents the current status of the Maritime Aerosol Network (MAN), which has been developed as a component of the Aerosol Robotic Network (AERONET). MAN deploys Microtops handheld Sun photometers and utilizes the calibration procedure and data processing (Version 2) traceable to AERONET. A web site dedicated to the MAN activity is described. A brief historical perspective is given to aerosol optical depth (AOD) measurements over the oceans. A short summary of the existing data, collected on board ships of opportunity during the NASA Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project is presented. Globally averaged oceanic aerosol optical depth (derived from island-based AERONET measurements) at 500 nm is ∼0.11 and Angstrom parameter (computed within spectral range 440–870 nm) is calculated to be ∼0.6. First results from the cruises contributing to the Maritime Aerosol Network are shown. MAN ship-based aerosol optical depth compares well to simultaneous island and near-coastal AERONET site AOD., The work of Tymon Zielinski was supported by Polish national grant AERONET59.
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- 2010
33. Assessing the uncertainties of model estimates of primary productivity in the tropical Pacific Ocean
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Friedrichs, Marjorie A. M., Carr, Mary-Elena, Barber, Richard T., Scardi, Michele, Antoine, David, Armstrong, Robert A., Asanuma, Ichio, Behrenfeld, Michael J., Buitenhuis, Erik T., Chai, Fei, Christian, James R., Ciotti, Aurea M., Doney, Scott C., Dowell, Mark, Dunne, John P., Gentili, Bernard, Gregg, Watson, Hoepffner, Nicolas, Ishizaka, Joji, Kameda, Takahiko, Lima, Ivan D., Marra, John F., Melin, Frederic, Moore, J. Keith, Morel, Andre, O'Malley, Robert T., O'Reilly, Jay, Saba, Vincent S., Schmeltz, Marjorie, Smyth, Tim J., Tjiputra, Jerry, Waters, Kirk, Westberry, Toby K., Winguth, Arne, Friedrichs, Marjorie A. M., Carr, Mary-Elena, Barber, Richard T., Scardi, Michele, Antoine, David, Armstrong, Robert A., Asanuma, Ichio, Behrenfeld, Michael J., Buitenhuis, Erik T., Chai, Fei, Christian, James R., Ciotti, Aurea M., Doney, Scott C., Dowell, Mark, Dunne, John P., Gentili, Bernard, Gregg, Watson, Hoepffner, Nicolas, Ishizaka, Joji, Kameda, Takahiko, Lima, Ivan D., Marra, John F., Melin, Frederic, Moore, J. Keith, Morel, Andre, O'Malley, Robert T., O'Reilly, Jay, Saba, Vincent S., Schmeltz, Marjorie, Smyth, Tim J., Tjiputra, Jerry, Waters, Kirk, Westberry, Toby K., and Winguth, Arne
- Abstract
Author Posting. © Elsevier B.V., 2009. This is the author's version of the work. It is posted here by permission of Elsevier B.V. for personal use, not for redistribution. The definitive version was published in Journal of Marine Systems 76 (2009): 113-133, doi:10.1016/j.jmarsys.2008.05.010., Depth-integrated primary productivity (PP) estimates obtained from satellite ocean color based models (SatPPMs) and those generated from biogeochemical ocean general circulation models (BOGCMs) represent a key resource for biogeochemical and ecological studies at global as well as regional scales. Calibration and validation of these PP models are not straightforward, however, and comparative studies show large differences between model estimates. The goal of this paper is to compare PP estimates obtained from 30 different models (21 SatPPMs and 9 BOGCMs) to a tropical Pacific PP database consisting of ~1000 14C measurements spanning more than a decade (1983- 1996). Primary findings include: skill varied significantly between models, but performance was not a function of model complexity or type (i.e. SatPPM vs. BOGCM); nearly all models underestimated the observed variance of PP, specifically yielding too few low PP (< 0.2 gC m-2d-2) values; more than half of the total root-mean-squared model-data differences associated with the satellite-based PP models might be accounted for by uncertainties in the input variables and/or the PP data; and the tropical Pacific database captures a broad scale shift from low biomass-normalized productivity in the 1980s to higher biomass-normalized productivity in the 1990s, which was not successfully captured by any of the models. This latter result suggests that interdecadal and global changes will be a significant challenge for both SatPPMs and BOGCMs. Finally, average root-mean-squared differences between in situ PP data on the equator at 140°W and PP estimates from the satellite-based productivity models were 58% lower than analogous values computed in a previous PP model comparison six years ago. The success of these types of comparison exercises is illustrated by the continual modification and improvement of the participating models and the resulting increase in model skill., This research was supported by a grant from the National Aeronautics and Space Agency Ocean Biology and Biogeochemistry program (NNG06GA03G), as well as by numerous other grants to the various participating investigators
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- 2009
34. Retrieval of coccolithophore calcite concentration from SeaWiFS Imagery
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Gordon, Howard R., primary, Boynton, G. Chris, additional, Balch, William M., additional, Groom, Stephen B., additional, Harbour, Derek S., additional, and Smyth, Tim J., additional
- Published
- 2001
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35. Factors associated with waiting time for surgery
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Clover, Kerrie A, primary, Dobbins, Timothy A, additional, Smyth, Tim J, additional, and Sanson‐Fisher, Rob W, additional
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- 1999
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36. Evaluating Operational AVHRR Sea Surface Temperature Data at the Coastline Using Benthic Temperature Loggers.
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Brewin, Robert J. W., Smale, Dan A., Moore, Pippa J., Dall’Olmo, Giorgio, Miller, Peter I., Taylor, Benjamin H., Smyth, Tim J., Fishwick, James R., and Yang, Mingxi
- Subjects
OCEAN temperature ,CARBON cycle ,REMOTE sensing ,REMOTE-sensing images ,DATA analysis ,WEATHER forecasting ,ENVIRONMENTAL monitoring - Abstract
The nearshore coastal ocean is one of the most dynamic and biologically productive regions on our planet, supporting a wide range of ecosystem services. It is also one of the most vulnerable regions, increasingly exposed to anthropogenic pressure. In the context of climate change, monitoring changes in nearshore coastal waters requires systematic and sustained observations of key essential climate variables (ECV), one of which is sea surface temperature (SST). As temperature influences physical, chemical and biological processes within coastal systems, accurate monitoring is crucial for detecting change. SST is an ECV that can be measured systematically from satellites. Yet, owing to a lack of adequate in situ data, the accuracy and precision of satellite SST at the coastline are not well known. In a prior study, we attempted to address this by taking advantage of in situ SST measurements collected by a group of surfers. Here, we make use of a three year time-series (2014–2017) of in situ water temperature measurements collected using a temperature logger (recording every 30 min) deployed within a kelp forest (∼3 m below chart datum) at a subtidal rocky reef site near Plymouth, UK. We compared the temperature measurements with three other independent in situ SST datasets in the region, from two autonomous buoys located ∼7 km and ∼33 km from the coastline, and from a group of surfers at two beaches near the kelp site. The three datasets showed good agreement, with discrepancies consistent with the spatial separation of the sites. The in situ SST measurements collected from the kelp site and the two autonomous buoys were matched with operational Advanced Very High Resolution Radiometer (AVHRR) EO SST passes, all within 1 h of the in situ data. By extracting data from the closest satellite pixel to the three sites, we observed a significant reduction in the performance of AVHRR at retrieving SST at the coastline, with root mean square differences at the kelp site over twice that observed at the two offshore buoys. Comparing the in situ water temperature data with pixels surrounding the kelp site revealed the performance of the satellite data improves when moving two to three pixels offshore and that this improvement was better when using an SST algorithm that treats each pixel independently in the retrieval process. At the three sites, we related differences between satellite and in situ SST data with a suite of atmospheric variables, collected from a nearby atmospheric observatory, and a high temporal resolution land surface temperature (LST) dataset. We found that differences between satellite and in situ SST at the coastline (kelp site) were well correlated with LST and solar zenith angle; implying contamination of the pixel by land is the principal cause of these larger differences at the coastline, as opposed to issues with atmospheric correction. This contamination could be either from land directly within the pixel, potentially impacted by errors in geo-location, or possibly through thermal adjacency effects. Our results demonstrate the value of using benthic temperature loggers for evaluating satellite SST data in coastal regions, and highlight issues with retrievals at the coastline that may inform future improvements in operational products. [ABSTRACT FROM AUTHOR]
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- 2018
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37. Finale: impact of the ORCHESTRA/ENCORE programmes on Southern Ocean heat and carbon understanding.
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Meijers AJS, Meredith MP, Shuckburgh EF, Kent EC, Munday DR, Firing YL, King B, Smyth TJ, Leng MJ, George Nurser AJ, Hewitt HT, Povl Abrahamsen E, Weiss A, Yang M, Bell TG, Alexander Brearley J, Boland EJD, Jones DC, Josey SA, Owen RP, Grist JP, Blaker AT, Biri S, Yelland MJ, Pimm C, Zhou S, Harle J, and Cornes RC
- Abstract
The 5-year Ocean Regulation of Climate by Heat and Carbon Sequestration and Transports (ORCHESTRA) programme and its 1-year extension ENCORE (ENCORE is the National Capability ORCHESTRA Extension) was an approximately 11-million-pound programme involving seven UK research centres that finished in March 2022. The project sought to radically improve our ability to measure, understand and predict the exchange, storage and export of heat and carbon by the Southern Ocean. It achieved this through a series of milestone observational campaigns in combination with model development and analysis. Twelve cruises in the Weddell Sea and South Atlantic were undertaken, along with mooring, glider and profiler deployments and aircraft missions, all contributing to measurements of internal ocean and air-sea heat and carbon fluxes. Numerous forward and adjoint numerical experiments were developed and supported by the analysis of coupled climate models. The programme has resulted in over 100 peer-reviewed publications to date as well as significant impacts on climate assessments and policy and science coordination groups. Here, we summarize the research highlights of the programme and assess the progress achieved by ORCHESTRA/ENCORE and the questions it raises for the future. This article is part of a discussion meeting issue 'Heat and carbon uptake in the Southern Ocean: the state of the art and future priorities'.
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- 2023
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