23 results on '"Saskia M. J. Hopman"'
Search Results
2. Clinical value of a screening tool for tumor predisposition syndromes in childhood cancer patients (TuPS)
- Author
-
Jan Loeffen, Saskia M. J. Hopman, Natasha K. A. van Eijkelenburg, Cora M. Aalfs, Fonnet E. Bleeker, Lieke P.V. Berger, Peter Hammond, Floor A. M. Postema, Charlotte J. Dommering, Jakob K. Anninga, Janna A. Hol, Raoul C.M. Hennekam, Anja Wagner, Maran J. W. Olderode-Berends, Marry M. van den Heuvel-Eibrink, Tom G.W. Letteboer, Lisethe Meijer, Johannes H. M. Merks, Corianne A. J. M. de Borgie, Wijnanda A. Kors, Clinical Genetics, Human genetics, and CCA - Cancer biology and immunology
- Subjects
0301 basic medicine ,Cancer Research ,medicine.medical_specialty ,media_common.quotation_subject ,Genetic predisposition to disease ,Pediatrics ,Imaging ,03 medical and health sciences ,0302 clinical medicine ,SDG 3 - Good Health and Well-being ,Neoplasms ,Internal medicine ,Genetic screening ,Epidemiology ,Genetics ,medicine ,Humans ,Mass Screening ,Clinical significance ,Prospective Studies ,Child ,Early Detection of Cancer ,Genetics (clinical) ,media_common ,Selection bias ,business.industry ,Cancer ,Syndrome ,medicine.disease ,Checklist ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Cohort ,Clinical value ,Original Article ,Observational study ,Three-dimensional ,business - Abstract
Recognizing a tumor predisposition syndrome (TPS) in a child with cancer is of clinical relevance. Earlier we developed a screening tool to increase diagnostic accuracy and clinical efficiency of identifying TPSs in children with cancer. Here we report on the value of this tool in clinical practice. TuPS is a prospective, observational, multi-center study including children newly diagnosed with cancer from 2016 to 2019 in the Netherlands. Children in whom a TPS had been diagnosed before the cancer diagnosis were excluded. The screening tool consists of a checklist, 2D and 3D photographic series and digital assessment of these by a clinical geneticist. If a TPS was suspected, the patient was assessed positive and referred for routine genetic consultation. Primary aim was to assess the clinical value of this new screening tool. Of the 363 included patients, 57% (208/363) were assessed positive. In 15% of patients (32/208), the 2D photographic series with (n = 12) or without (n = 20) 3D photographs were decisive in the positive assessment. In 2% (4/208) of positive assessed patients, a TPS was diagnosed, and in an additional 2% (4/208) a germline variant of uncertain significance was found. Thirty-five negatively assessed patients were evaluated through routine genetic consultation as controls, in none a TPS was detected. Using the screening tool, 57% of the patients were assessed as suspected for having a TPS. No false negative results were identified in the negative control group in the clinical care setting. The observed prevalence of TPS was lower than expected, due to selection bias in the cohort. Supplementary Information The online version contains supplementary material available at 10.1007/s10689-021-00237-1.
- Published
- 2021
- Full Text
- View/download PDF
3. Current recommendations for cancer surveillance in Gorlin syndrome: a report from the SIOPE host genome working group (SIOPE HGWG)
- Author
-
O Michaeli, N Waespe, Laurence Brugières, Christian P. Kratz, Miriam J. Smith, Alexandra Russo, Steffen Hirsch, D G Evans, Saskia M. J. Hopman, B Doergeloh, H Salvador, V. Ridola, M. Jorgensen, T Milde, Léa Guerrini-Rousseau, B Claret, and M Kuhlen
- Subjects
0301 basic medicine ,Oncology ,Cancer Research ,Skin Neoplasms ,SUFU ,medicine.medical_treatment ,030105 genetics & heredity ,Gorlin syndrome ,0302 clinical medicine ,Epidemiology ,Genotype ,PTCH1 ,Keratocyst ,610 Medicine & health ,Child ,Genetics (clinical) ,Surveillance ,Basal Cell Nevus Syndrome ,Cancer predisposition syndrome ,Patched-1 Receptor ,Hereditary ,030220 oncology & carcinogenesis ,Child, Preschool ,Original Article ,medicine.symptom ,360 Social problems & social services ,medicine.medical_specialty ,Host genome ,03 medical and health sciences ,Young Adult ,Internal medicine ,Genetics ,medicine ,Humans ,Hedgehog Proteins ,ddc:610 ,Cerebellar Neoplasms ,business.industry ,Cancer ,medicine.disease ,Human genetics ,Radiation therapy ,Repressor Proteins ,stomatognathic diseases ,business - Abstract
Gorlin syndrome (MIM 109,400), a cancer predisposition syndrome related to a constitutional pathogenic variation (PV) of a gene in the Sonic Hedgehog pathway (PTCH1 or SUFU), is associated with a broad spectrum of benign and malignant tumors. Basal cell carcinomas (BCC), odontogenic keratocysts and medulloblastomas are the main tumor types encountered, but meningiomas, ovarian or cardiac fibromas and sarcomas have also been described. The clinical features and tumor risks are different depending on the causative gene. Due to the rarity of this condition, there is little data on phenotype-genotype correlations. This report summarizes genotype-based recommendations for screening patients with PTCH1 and SUFU-related Gorlin syndrome, discussed during a workshop of the Host Genome Working Group of the European branch of the International Society of Pediatric Oncology (SIOPE HGWG) held in January 2020. In order to allow early detection of BCC, dermatologic examination should start at age 10 in PTCH1, and at age 20 in SUFU PV carriers. Odontogenic keratocyst screening, based on odontologic examination, should begin at age 2 with annual orthopantogram beginning around age 8 for PTCH1 PV carriers only. For medulloblastomas, repeated brain MRI from birth to 5 years should be proposed for SUFU PV carriers only. Brain MRI for meningiomas and pelvic ultrasound for ovarian fibromas should be offered to both PTCH1 and SUFU PV carriers. Follow-up of patients treated with radiotherapy should be prolonged and thorough because of the risk of secondary malignancies. Prospective evaluation of evidence of the effectiveness of these surveillance recommendations is required.
- Published
- 2021
- Full Text
- View/download PDF
4. 3D analysis of facial morphology in Dutch children with cancer
- Author
-
Johannes H. M. Merks, Raoul C.M. Hennekam, Saskia M. J. Hopman, Floor A. M. Postema, Hanne Hoskens, Michael Suttie, Harold Matthews, Peter Hammond, Peter Claes, Hilde Peeters, General Paediatrics, and APH - Quality of Care
- Subjects
Pediatrics ,medicine.medical_specialty ,3d analysis ,Health Informatics ,Malignancy ,European descent ,030218 nuclear medicine & medical imaging ,Imaging ,03 medical and health sciences ,0302 clinical medicine ,Imaging, Three-Dimensional ,Neoplasms ,medicine ,Photography ,Humans ,Genetic risk ,Child ,Facial asymmetry ,business.industry ,Significant difference ,Facial morphology ,Cancer ,medicine.disease ,Computer Science Applications ,Face ,business ,Three-dimensional ,030217 neurology & neurosurgery ,Software ,Facial symmetry - Abstract
UNLABELLED: Background and Objective; Genetic risk factors for childhood cancer may also influence facial morphology. 3D photography can be used in the recognition of differences in face shape among individuals. In previous research, 3D facial photography was used to identify increased facial asymmetry and greater deviation from normal facial morphology in a group of individuals with distinct morphological features who had childhood cancer compared to healthy controls. In this study, we aim to determine whether there is a difference in facial morphology between children with cancer without previously selected morphological features and healthy controls, detected with 3D facial photography. METHODS: Facial 3D photographic images were obtained of children with a newly diagnosed malignancy. The resulting sample comprised 13 different cancer types. Patients were excluded if they had a known genetic cause of the cancer. Patients were compared to healthy controls, matched for sex, age and ethnic background. The degree of asymmetry and overall deviation of an individual's face from an age and sex typical control face were measured. RESULTS: A total of 163 patients of European descent were included. No significant difference in asymmetry between patients and controls could be identified. On average, patients deviated more from an age and sex typical face than the controls. CONCLUSION: This study shows that children with cancer deviate more than controls, possibly suggesting a higher prevalence of genetic anomalies within this group. The results suggest that this is not sufficient to discriminate patients from controls. Further research is necessary to explore the patterns of individual variation among the overall deviation of patients and controls. The open access fees have been paid for this paper, so the paper is open-access in this normally closed-access journal ispartof: Computer Methods And Programs In Biomedicine vol:205 ispartof: location:Ireland status: Published online
- Published
- 2021
5. Multiple tumors due to mosaic genome-wide paternal uniparental disomy
- Author
-
Jet Bliek, Carel J. M. van Noesel, Saskia M. J. Hopman, Johannes H. M. Merks, Raoul C.M. Hennekam, Jan C. Oosterwijk, Floor A. M. Postema, Laura J. C. M. van Zutven, Clinical Genetics, ARD - Amsterdam Reproduction and Development, Graduate School, CCA - Cancer biology and immunology, Human Genetics, Pathology, Paediatric Oncology, APH - Quality of Care, Targeted Gynaecologic Oncology (TARGON), Damage and Repair in Cancer Development and Cancer Treatment (DARE), Human genetics, Epidemiology and Data Science, Pediatric surgery, and Amsterdam Reproduction & Development (AR&D)
- Subjects
tumors ,Male ,Beckwith-Wiedemann Syndrome ,FEATURES ,Beckwith–Wiedemann syndrome ,Genome-wide association study ,paternal uniparental disomy ,Case Reports ,Bioinformatics ,Genome ,0302 clinical medicine ,Neoplasms/classification ,Neoplasms ,Genotype ,Medicine ,Chromosomes, Human ,Non-U.S. Gov't ,Human/genetics ,body asymmetry ,Mosaicism ,Research Support, Non-U.S. Gov't ,Hematology ,Single Nucleotide ,syndrome ,Prognosis ,Oncology ,030220 oncology & carcinogenesis ,Uniparental Disomy/diagnosis ,Female ,Adult ,Genetic counseling ,Paternal uniparental disomy ,Research Support ,Polymorphism, Single Nucleotide ,Chromosomes ,03 medical and health sciences ,Genomic Imprinting ,Journal Article ,Humans ,Polymorphism ,business.industry ,Infant, Newborn ,Infant ,Chromosomes, Human/genetics ,Uniparental Disomy ,Molecular diagnostics ,medicine.disease ,Newborn ,ISODISOMY ,Pediatrics, Perinatology and Child Health ,business ,Genomic imprinting ,Beckwith-Wiedemann Syndrome/diagnosis ,030215 immunology ,Genome-Wide Association Study - Abstract
Mosaic genome-wide paternal uniparental disomy is an infrequently described disorder in which affected individuals have signs and symptoms that may resemble Beckwith-Wiedemann syndrome. In addition, they can develop multiple benign and malignant tumors throughout life. Routine molecular diagnostics may not detect the (characteristic) low level of mosaicism, and the diagnosis is likely to be missed. Genetic counseling and a life-long alertness for the development of tumors is indicated. We describe the long diagnostic process of a patient who already had a tumor at birth and developed multiple tumors in childhood and adulthood. Furthermore, we offer clues to recognize the entity.
- Published
- 2019
- Full Text
- View/download PDF
6. High-sensitivity sequencing reveals multi-organ somatic mosaicism causing DICER1 syndrome
- Author
-
Yu Chang Wang, Dorothée Bouron-Dal Soglio, Kristine L. Doyle, Dunarel Badescu, Saskia M. J. Hopman, Jiannis Ragoussis, Evan Weber, Barbara Rivera, John R. Priest, Charlotte Engelenberg, Timothée Revil, Aparna Ramasubramanian, Linus Forsmark, Antonia H. M. Bouts, Johannes H. M. Merks, Mona Wu, Johanna M. van Hagen, Nelly Sabbaghian, William D. Foulkes, Tonja Toler, Claudio Sandoval, David A. Plager, Janine Callahan, Leanne de Kock, Human genetics, Other Research, Paediatric Oncology, CCA -Cancer Center Amsterdam, Paediatric Nephrology, and ANS - Cellular & Molecular Mechanisms
- Subjects
Male ,Ribonuclease III ,0301 basic medicine ,DNA Mutational Analysis ,Loss of Heterozygosity ,Germline mosaicism ,Biology ,medicine.disease_cause ,Research Support ,Sensitivity and Specificity ,Deep sequencing ,Germline ,DEAD-box RNA Helicases ,Neoplasms, Multiple Primary ,Loss of heterozygosity ,03 medical and health sciences ,medicine ,Genetics ,Journal Article ,Humans ,Missense mutation ,Genetics(clinical) ,Child ,Non-U.S. Gov't ,Genetic Association Studies ,Genetics (clinical) ,DICER1 Syndrome ,COLD-PCR ,Mutation ,Mosaicism ,Research Support, Non-U.S. Gov't ,Computational Biology ,High-Throughput Nucleotide Sequencing ,Syndrome ,Phenotype ,030104 developmental biology ,Child, Preschool ,Female - Abstract
Background Somatic mosaicism is being increasingly recognised as an important cause of non-Mendelian presentations of hereditary syndromes. A previous whole-exome sequencing study using DNA derived from peripheral blood identified mosaic mutations in DICER1 in two children with overgrowth and developmental delay as well as more typical phenotypes of germline DICER1 mutation. However, very-low-frequency mosaicism is difficult to detect, and thus, causal mutations can go unnoticed. Highly sensitive, cost-effective approaches are needed to molecularly diagnose these persons. We studied four children with multiple primary tumours known to be associated with the DICER1 syndrome, but in whom germline DICER1 mutations were not detected by conventional mutation detection techniques. Methods and results We observed the same missense mutation within the DICER1 RNase IIIb domain in multiple tumours from different sites in each patient, raising suspicion of somatic mosaicism. We implemented three different targeted-capture technologies, including the novel HaloPlex HS (Agilent Technologies), followed by deep sequencing, and confirmed that the identified mutations are mosaic in origin in three patients, detectable in 0.24–31% of sequencing reads in constitutional DNA. The mosaic origin of patient 49s mutation remains to be unequivocally established. We also discovered likely pathogenic second somatic mutations or loss of heterozygosity (LOH) in tumours from all four patients. Conclusions Mosaic DICER1 mutations are an important cause of the DICER1 syndrome in patients with severe phenotypes and often appear to be accompanied by second somatic truncating mutations or LOH in the associated tumours. Furthermore, the molecular barcode-containing HaloPlex HS provides the sensitivity required for detection of such low-level mosaic mutations and could have general applicability.
- Published
- 2016
- Full Text
- View/download PDF
7. Correspondence to Gripp et al. nephroblastomatosis or Wilms tumor in a fourth patient with a somatic PIK3CA mutation
- Author
-
Raoul C.M. Hennekam, Floor A. M. Postema, Johannes H. M. Merks, Saskia M. J. Hopman, Matthew A. Deardorff, ANS - Complex Trait Genetics, ARD - Amsterdam Reproduction and Development, Graduate School, Paediatric Oncology, CCA -Cancer Center Amsterdam, CCA - Cancer Treatment and Quality of Life, APH - Quality of Care, and Paediatric Genetics
- Subjects
0301 basic medicine ,business.industry ,Somatic cell ,Pik3ca mutation ,Wilms' tumor ,030105 genetics & heredity ,medicine.disease ,03 medical and health sciences ,Text mining ,Genetics ,Cancer research ,Medicine ,business ,Nephroblastomatosis ,Genetics (clinical) - Published
- 2017
- Full Text
- View/download PDF
8. High Yield of Pathogenic Germline Mutations Causative or Likely Causative of the Cancer Phenotype in Selected Children with Cancer
- Author
-
Eveline J. Kamping, Wojciech Młynarski, Diede A G van Bladel, Nicoline Hoogerbrugge, Anja Wagner, Roland P. Kuiper, Marjolijn J. L. Ligtenberg, Marjolijn C.J. Jongmans, Jan Loeffen, Denisa Ilencikova, Dylan A. Mordaunt, Lesley M McGregor, Eveline S. J. M. de Bont, Antonis Kattamis, Gijs W. E. Santen, Thatjana Gardeitchik, Arjen R. Mensenkamp, Elizabeth Thompson, Agata Pastorczak, Martine J. van Belzen, Saskia M. J. Hopman, Maran J. W. Olderode-Berends, Anneke Vulto van Silfhout, Carlo Marcelis, David A. Koolen, Esmé Waanders, Illja J. Diets, Peter M. Hoogerbrugge, Erica H. Gerkes, Damage and Repair in Cancer Development and Cancer Treatment (DARE), Stem Cell Aging Leukemia and Lymphoma (SALL), Pediatrics, and Clinical Genetics
- Subjects
0301 basic medicine ,Male ,Cancer Research ,INTELLECTUAL DISABILITY ,WEAVER SYNDROME ,Craniofacial Abnormalities ,0302 clinical medicine ,Neoplasms ,Genotype ,Tumours of the digestive tract Radboud Institute for Molecular Life Sciences [Radboudumc 14] ,Medicine ,Exome ,Child ,Exome sequencing ,Genetics ,Rubinstein-Taybi Syndrome ,GENETIC-VARIATION ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,Disorders of movement Donders Center for Medical Neuroscience [Radboudumc 3] ,Phenotype ,Oncology ,030220 oncology & carcinogenesis ,Child, Preschool ,Female ,LI-FRAUMENI SYNDROME ,Hand Deformities, Congenital ,Rare cancers Radboud Institute for Health Sciences [Radboudumc 9] ,Adolescent ,Micrognathism ,ACUTE MYELOID-LEUKEMIA ,03 medical and health sciences ,Germline mutation ,SDG 3 - Good Health and Well-being ,WINTER CEREBROFRONTOFACIAL SYNDROME ,Exome Sequencing ,Genetic predisposition ,Congenital Hypothyroidism ,Humans ,Abnormalities, Multiple ,Genetic Predisposition to Disease ,Coffin–Siris syndrome ,Germ-Line Mutation ,ACUTE LYMPHOBLASTIC-LEUKEMIA ,PEDIATRIC CANCER ,CHILDHOOD-CANCER ,business.industry ,COFFIN-SIRIS SYNDROME ,Cancer ,Infant ,medicine.disease ,Pediatric cancer ,030104 developmental biology ,Li–Fraumeni syndrome ,Face ,business ,Neck - Abstract
Purpose: In many children with cancer and characteristics suggestive of a genetic predisposition syndrome, the genetic cause is still unknown. We studied the yield of pathogenic mutations by applying whole-exome sequencing on a selected cohort of children with cancer. Experimental Design: To identify mutations in known and novel cancer-predisposing genes, we performed trio-based whole-exome sequencing on germline DNA of 40 selected children and their parents. These children were diagnosed with cancer and had at least one of the following features: (1) intellectual disability and/or congenital anomalies, (2) multiple malignancies, (3) family history of cancer, or (4) an adult type of cancer. We first analyzed the sequence data for germline mutations in 146 known cancer-predisposing genes. If no causative mutation was found, the analysis was extended to the whole exome. Results: Four patients carried causative mutations in a known cancer-predisposing gene: TP53 and DICER1 (n = 3). In another 4 patients, exome sequencing revealed mutations causing syndromes that might have contributed to the malignancy (EP300-based Rubinstein–Taybi syndrome, ARID1A-based Coffin–Siris syndrome, ACTB-based Baraitser–Winter syndrome, and EZH2-based Weaver syndrome). In addition, we identified two genes, KDM3B and TYK2, which are possibly involved in genetic cancer predisposition. Conclusions: In our selected cohort of patients, pathogenic germline mutations causative or likely causative of the cancer phenotype were found in 8 patients, and two possible novel cancer-predisposing genes were identified. Therewith, our study shows the added value of sequencing beyond a cancer gene panel in selected patients, to recognize childhood cancer predisposition. Clin Cancer Res; 24(7); 1594–603. ©2018 AACR.
- Published
- 2018
9. Consequences of diagnosing a tumor predisposition syndrome in children with cancer: A literature review
- Author
-
Raoul C.M. Hennekam, Johannes H. M. Merks, Floor A. M. Postema, Saskia M. J. Hopman, Amsterdam Neuroscience - Complex Trait Genetics, CCA - Cancer Treatment and Quality of Life, Amsterdam Neuroscience - Cellular & Molecular Mechanisms, Graduate School, APH - Quality of Care, Amsterdam Neuroscience, Paediatric Genetics, and Paediatric Oncology
- Subjects
Male ,0301 basic medicine ,Oncology ,medicine.medical_specialty ,Pediatrics ,Adolescent ,pediatrics ,consequences ,03 medical and health sciences ,0302 clinical medicine ,Neoplastic Syndromes, Hereditary ,Internal medicine ,Tumor predisposition syndrome ,medicine ,Humans ,cancer ,Pediatrics, Perinatology, and Child Health ,Clinical care ,Child ,genetic predisposition to disease ,Hematology ,business.industry ,Infant ,Cancer ,medicine.disease ,Perinatology ,and Child Health ,030104 developmental biology ,Child, Preschool ,030220 oncology & carcinogenesis ,Pediatrics, Perinatology and Child Health ,Female ,business - Abstract
Up to 8.5% of children with cancer have a genetic cause for their cancer: a tumor predisposition syndrome (TPS). Diagnosing a TPS is of great importance, as it may have major consequences for clinical care. Patients with TPSs require specific monitoring and management. We present an overview of the cancer-related and noncancer-related consequences for the 36 most common TPSs.
- Published
- 2018
10. Phenotypes and genotypes in individuals with SMC1A variants
- Author
-
Egbert J.W. Redeker, Annemiek Landlust, Mariet W. Elting, Jo Moss, Yvonne Hilhorst-Hofstee, Juan Pié, Saskia M. J. Hopman, Rieneke Vorstenbosch, Ingrid D. C. van Balkom, Angelo Selicorni, Anne Marie Bisgaard, Sandra Jansen, Chris Oliver, Caroline Michot, Sylvia A. Huisman, Maninder Kaur, Ilaria Parenti, Katta M. Girisha, Zeynep Tümer, Ingrid Bader, Matthew A. Deardorff, Claudine Rieubland, Davor Lessel, Sigrid Piening, Mala Isrie, Denise Horn, Paul A. Mulder, Constanza Cinca, Tara L. Wenger, Cathrine Jespersgaard, Jolanta Wierzba, Karin E. M. Diderich, Phillis Lakeman, Cristina Gervasini, Gabriele Gillessen-Kaesbach, Anthonie J. van Essen, Alice S. Brooks, Raoul C.M. Hennekam, Frank J. Kaiser, Ian D. Krantz, Feliciano J. Ramos, Tjitske Kleefstra, David R. FitzPatrick, Sarah E. Noon, Anna Cereda, Silvia Russo, Dinah Clark, Valérie Cormier-Daire, Human genetics, Amsterdam Reproduction & Development (AR&D), Erasmus MC other, Paediatric Genetics, Graduate School, ARD - Amsterdam Reproduction and Development, Human Genetics, Paediatric Oncology, APH - Quality of Care, and ACS - Pulmonary hypertension & thrombosis
- Subjects
0301 basic medicine ,Adult ,Male ,Cornelia de Lange Syndrome ,Cohesin complex ,Adolescent ,Chromosomal Proteins, Non-Histone ,Rett syndrome ,Cell Cycle Proteins ,Biology ,NIPBL ,03 medical and health sciences ,Young Adult ,SMC1A ,De Lange Syndrome ,syndrome delineation ,medicine ,Genetics ,Missense mutation ,Humans ,Exome ,Genetics(clinical) ,Child ,610 Medicine & health ,Genetics (clinical) ,Exome sequencing ,Netherlands ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,behavior ,Infant, Newborn ,Infant ,Proteins ,self-injurious behavior ,Middle Aged ,medicine.disease ,Brachmann-De Lange syndrome ,Phenotype ,Cornelia de Lange syndrome ,030104 developmental biology ,Child, Preschool ,severity score ,Spasms, Infantile - Abstract
Item does not contain fulltext SMC1A encodes one of the proteins of the cohesin complex. SMC1A variants are known to cause a phenotype resembling Cornelia de Lange syndrome (CdLS). Exome sequencing has allowed recognizing SMC1A variants in individuals with encephalopathy with epilepsy who do not resemble CdLS. We performed an international, interdisciplinary study on 51 individuals with SMC1A variants for physical and behavioral characteristics, and compare results to those in 67 individuals with NIPBL variants. For the Netherlands all known individuals with SMC1A variants were studied, both with and without CdLS phenotype. Individuals with SMC1A variants can resemble CdLS, but manifestations are less marked compared to individuals with NIPBL variants: growth is less disturbed, facial signs are less marked (except for periocular signs and thin upper vermillion), there are no major limb anomalies, and they have a higher level of cognitive and adaptive functioning. Self-injurious behavior is more frequent and more severe in the NIPBL group. In the Dutch group 5 of 13 individuals (all females) had a phenotype that shows a remarkable resemblance to Rett syndrome: epileptic encephalopathy, severe or profound intellectual disability, stereotypic movements, and (in some) regression. Their missense, nonsense, and frameshift mutations are evenly spread over the gene. We conclude that SMC1A variants can result in a phenotype resembling CdLS and a phenotype resembling Rett syndrome. Resemblances between the SMC1A group and the NIPBL group suggest that a disturbed cohesin function contributes to the phenotype, but differences between these groups may also be explained by other underlying mechanisms such as moonlighting of the cohesin genes.
- Published
- 2017
- Full Text
- View/download PDF
11. Face shape differs in phylogenetically related populations
- Author
-
Saskia M. J. Hopman, Michael Suttie, Raoul C.M. Hennekam, Johannes H. M. Merks, Peter Hammond, Paediatric Oncology, Oncogenomics, Cancer Center Amsterdam, Amsterdam Neuroscience, Amsterdam Public Health, and Human Genetics
- Subjects
Adult ,Male ,3d analysis ,Population ,Biology ,Article ,White People ,Face shape ,Phylogenetics ,Genetics ,Humans ,education ,Genetic Association Studies ,Phylogeny ,Genetics (clinical) ,Netherlands ,education.field_of_study ,Phylogenetic tree ,Genetic variants ,Facial morphology ,Anthropometry ,United Kingdom ,Phenotype ,Evolutionary biology ,Face ,Female - Abstract
3D analysis of facial morphology has delineated facial phenotypes in many medical conditions and detected fine grained differences between typical and atypical patients to inform genotype-phenotype studies. Next-generation sequencing techniques have enabled extremely detailed genotype-phenotype correlative analysis. Such comparisons typically employ, control groups matched for age, sex and ethnicity and the distinction-between ethnic categories in genotype-phenotype studies has been widely debated. The phylogenetic tree based on genetic polymorphism studies divides the world population into nine subpopulations. Here we show statistically significant face shape differences between two European Caucasian populations of close phylogenetic and geographic proximity from the UK and The Netherlands. The average face shape differences between the Dutch and UK cohorts were visualised in dynamic morphs and signature heat maps, and quantified for their statistical significance using both conventional anthropometry and state of the art dense surface modelling techniques. Our results demonstrate significant differences between Dutch and UK face shape. Other studies have shown that genetic variants influence normal facial variation. Thus, face shape difference between populations could reflect underlying genetic difference. This should be taken into account in genotype-phenotype studies and we recommend that in those studies reference groups be established in the same population as the individuals who form the subject of the study
- Published
- 2014
- Full Text
- View/download PDF
12. The development of a clinical screening instrument for tumour predisposition syndromes in childhood cancer patients
- Author
-
Saskia M. J. Hopman, Anja Wagner, Huib N. Caron, Leslie G. Biesecker, Trevor Cole, Cora M. Aalfs, Eamonn R. Maher, David Viskochil, Charis Eng, Max M. van Noesel, Johannes H. M. Merks, Alain Verloes, Eric Legius, Corianne A. J. M. de Borgie, Rosanna Weksberg, Raoul C.M. Hennekam, Pediatrics, Clinical Genetics, Paediatric Oncology, Oncogenomics, Cancer Center Amsterdam, Other departments, Human Genetics, Amsterdam Public Health, Amsterdam Neuroscience, and Paediatrics
- Subjects
Male ,Cancer Research ,Pediatrics ,medicine.medical_specialty ,Delphi Technique ,Referral ,Childhood cancer ,education ,Delphi method ,Pilot Projects ,Article ,Cohort Studies ,SDG 3 - Good Health and Well-being ,Neoplasms ,medicine ,Humans ,Genetic Predisposition to Disease ,Genetic Testing ,Child ,Early Detection of Cancer ,Genetic testing ,medicine.diagnostic_test ,business.industry ,Reproducibility of Results ,Cancer ,Geneticist ,medicine.disease ,Oncology ,Cohort ,Physical therapy ,Female ,business ,Precancerous Conditions ,Cohort study - Abstract
Background Identification of tumour predisposition syndromes in patients who have cancer in childhood is paramount for optimal care. A screening instrument that can help to identify such patients will facilitate physicians caring for children with cancer. The complete screening instrument should consist of a standardised series of pictures and a screening form for manifestations not visible in the pictures. Here we describe the development of such a screening form based on an international two-stage Delphi process and an initial validation of the complete instrument. Patients and methods We identified manifestations that may contribute to the diagnosis of a tumour predisposition syndrome through the Winter–Baraitser Dysmorphology Database and the textbook “Gorlin’s Syndromes of the Head and Neck”. In a two-round Delphi process, eight international content-experts scored the contribution of each of these manifestations. We performed a clinical validation of the instrument in a selected cohort of 10 paediatric cancer patients from another centre. Results In total, 49 manifestations were found to contribute to the diagnosis of a tumour predisposition syndrome and were included in the screening form. The pilot validation study showed that patients suspected of having a tumour predisposition syndrome were recognised. Excellent correlation for indications of patient’s referral between the screening instrument and the reference standard (personal evaluation by an experienced clinical geneticist) was found. Conclusions The Delphi process performed by international specialists with a function as opinion leaders in their field of expertise, has led to a screening instrument for childhood cancer patients. Patients who may have a tumour predisposition syndrome and thus have an indication to be referred for further genetic analysis, can be identified using the screening instrument.
- Published
- 2013
- Full Text
- View/download PDF
13. Facial asymmetry in head and neck rhabdomyosarcoma survivors
- Author
-
Reineke A, Schoot, Marinka L F, Hol, Johannes H M, Merks, Michael, Suttie, Olga, Slater, Marinde, van Lennep, Saskia M J, Hopman, David, Dunaway, Jonathan, Syme-Grant, Ludi E, Smeele, Koos H, Zwinderman, Huib N, Caron, and Peter, Hammond
- Subjects
Adult ,Male ,Imaging, Three-Dimensional ,Adolescent ,Facial Asymmetry ,Head and Neck Neoplasms ,Child, Preschool ,Rhabdomyosarcoma ,Humans ,Female ,Survivors ,Child - Abstract
Radiotherapy is essential for achieving and maintaining local control in head and neck rhabdomyosarcoma (HNRMS) patients. However, radiotherapy may cause outgrowth disturbances of facial bone and soft tissue, resulting in facial asymmetry. The aim of this study was to develop a method to visualize and measure facial asymmetry in HNRMS survivors using three-dimensional (3D) imaging techniques.Facial deformity was evaluated in a multidisciplinary clinical assessment of 75 HNRMS survivors, treated with external beam radiotherapy (EBRT, n = 26) or Ablative surgery, MOulage brachytherapy, and REconstruction (AMORE, n = 49). Individual facial asymmetry was measured using 3D photogrammetry and expressed in a raw asymmetry index and a normalized sex-age-ethnicity-matched asymmetry signature weight. Facial asymmetry was also compared between British and Dutch controls and between survivors and their matched controls.Facial asymmetry was more pronounced with increasing age (P0.01) in British controls compared with Dutch controls (P = 0.04). Survivors developed more facial asymmetry than matched controls (P0.001). The clinical assessment of facial deformity correlated with the raw asymmetry index (r = 0.60, P0.001).3D imaging can be used for objective measurement of facial asymmetry in HNRMS survivors. The raw asymmetry index correlated with a clinical assessment of facial deformity. Comparisons between treatment groups seemed inappropriate given the differences in facial asymmetry between British and Dutch controls. In future studies, pretreatment images could act as matched controls for posttreatment evaluation.
- Published
- 2016
14. 3D morphometry aids facial analysis of individuals with a childhood cancer
- Author
-
Michael Suttie, Johannes H. M. Merks, Peter Hammond, Raoul C.M. Hennekam, Saskia M. J. Hopman, Paediatric Oncology, Cancer Center Amsterdam, Amsterdam Public Health, and Paediatric Genetics
- Subjects
Adult ,Male ,0301 basic medicine ,three-dimensional imaging ,Adolescent ,Childhood cancer ,030105 genetics & heredity ,Face shape ,face shape differences ,Young Adult ,03 medical and health sciences ,Facial dysmorphism ,morphological abnormalities ,Imaging, Three-Dimensional ,Facial analysis ,Neoplasms ,Image Interpretation, Computer-Assisted ,Image Processing, Computer-Assisted ,Genetics ,Journal Article ,Cluster Analysis ,Humans ,Medicine ,childhood cancer ,Patient group ,Child ,Genetics (clinical) ,Orthodontics ,morphometric analysis ,business.industry ,030104 developmental biology ,Facial Asymmetry ,Morphometric analysis ,Case-Control Studies ,Face ,Female ,business ,Shape analysis (digital geometry) ,Facial symmetry ,3D - Abstract
A group of patients who had cancer as a child were previously found to have distinct patterns of morphological abnormalities. In this study, we investigated the added value of 3D shape analysis to characterize their facial morphology. Primarily, we showed in an objective and quantitative manner that the overall facial dysmorphism of the individuals who had had a childhood cancer was significantly greater than that of the controls. We also demonstrated how the same approach can be used to detect a similar disparity for a more localized malar region comprising customized disconnected patches defined on both sides of the face. In addition, by comparing original face surfaces to their mirrored forms, we confirmed that the patient group had significantly greater facial asymmetry than the controls. Each of these results made use of surface shape differences not detectable by simple linear or angular characteristics as might be used in analyses based on measures captured manually or derived from landmarks annotating 2D photographic images. We conclude that 3D morphometric analysis of a relatively small heterogeneous patient group can further delineate face shape differences from typically developing individuals that are too subtle or geometrically complex to identify or quantify objectively with conventional clinical and anthropometric approaches. © 2016 Wiley Periodicals, Inc.
- Published
- 2016
15. Mutation analysis of the SHOC2 gene in Noonan-like syndrome and in hematologic malignancies
- Author
-
Hotaka Kamasaki, Seiji Mizuno, Takeshi Rikiishi, Shoko Komatsuzaki, Nobuhiko Okamoto, Tetsuya Niihori, Raoul C.M. Hennekam, Saskia M. J. Hopman, Shigeru Tsuchiya, Masue Imaizumi, Yoriko Watanabe, Yoichi Matsubara, Ikuko Kondo, Ryuhei Okuyama, Hirofumi Ohashi, Hiroshi Kawame, Yoko Aoki, Nobuko Moriyama, Kenji Kurosawa, Shigeo Kure, ANS - Amsterdam Neuroscience, APH - Amsterdam Public Health, Paediatrics, Paediatric Oncology, and Oncogenomics
- Subjects
Male ,Pathology ,medicine.medical_specialty ,Adolescent ,DNA Mutational Analysis ,Gene Expression ,Biology ,Cell Line ,Young Adult ,Germline mutation ,Costello syndrome ,Genetics ,medicine ,Humans ,RNA, Messenger ,HRAS ,Child ,Genetics (clinical) ,Noonan Syndrome ,Intracellular Signaling Peptides and Proteins ,Autosomal dominant trait ,medicine.disease ,PTPN11 ,Child, Preschool ,Hematologic Neoplasms ,Mutation ,SOS1 ,Webbed neck ,Noonan syndrome ,Female ,medicine.symptom - Abstract
Noonan syndrome is an autosomal dominant disease characterized by dysmorphic features, webbed neck, cardiac anomalies, short stature and cryptorchidism. It shows phenotypic overlap with Costello syndrome and cardio-facio-cutaneous (CFC) syndrome. Noonan syndrome and related disorders are caused by germline mutations in genes encoding molecules in the RAS/MAPK pathway. Recently, a gain-of-function mutation in SHOC2, p.S2G, has been identified as causative for a type of Noonan-like syndrome characterized by the presence of loose anagen hair. In order to understand the contribution of SHOC2 mutations to the clinical manifestations of Noonan syndrome and related disorders, we analyzed SHOC2 in 92 patients with Noonan syndrome and related disorders who did not exhibit PTPN11, KRAS, HRAS, BRAF, MAP2K1/2, SOS1 or RAF1 mutations. We found the previously identified p.S2G mutation in eight of our patients. We developed a rapid detection system to identify the p.S2G mutation using melting curve analysis, which will be a useful tool to screen for the apparently common mutation. All the patients with the p.S2G mutation showed short stature, sparse hair and atopic skin. Six of the mutation-positive patients showed severe mental retardation and easily pluckable hair, and one showed leukocytosis. No SHOC2 mutations were identified in leukemia cells from 82 leukemia patients. These results suggest that clinical manifestations in SHOC2 mutation-positive patients partially overlap with those in patients with typical Noonan or CFC syndrome and show that easily pluckable/loose anagen hair is distinctive in SHOC2 mutation-positive patients. Journal of Human Genetics (2010) 55, 801-809; doi:10.1038/jhg.2010.116; published online 30 September 2010
- Published
- 2010
- Full Text
- View/download PDF
16. Facial asymmetry in head and neck rhabdomyosarcoma survivors
- Author
-
Saskia M. J. Hopman, Koos H. Zwinderman, Marinde van Lennep, Olga Slater, Reineke A. Schoot, Michael Suttie, Peter Hammond, Johannes H. M. Merks, Marinka L.F. Hol, Huib N. Caron, Ludi E. Smeele, Jonathan Syme-Grant, and David J Dunaway
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Facial bone ,business.industry ,medicine.medical_treatment ,Brachytherapy ,Soft tissue ,Hematology ,medicine.disease ,Surgery ,Radiation therapy ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Oncology ,030220 oncology & carcinogenesis ,Pediatrics, Perinatology and Child Health ,Medicine ,Radiology ,External beam radiotherapy ,Asymmetry Index ,business ,Rhabdomyosarcoma ,Facial symmetry - Abstract
Introduction Radiotherapy is essential for achieving and maintaining local control in head and neck rhabdomyosarcoma (HNRMS) patients. However, radiotherapy may cause outgrowth disturbances of facial bone and soft tissue, resulting in facial asymmetry. The aim of this study was to develop a method to visualize and measure facial asymmetry in HNRMS survivors using three-dimensional (3D) imaging techniques. Methods Facial deformity was evaluated in a multidisciplinary clinical assessment of 75 HNRMS survivors, treated with external beam radiotherapy (EBRT, n = 26) or Ablative surgery, MOulage brachytherapy, and REconstruction (AMORE, n = 49). Individual facial asymmetry was measured using 3D photogrammetry and expressed in a raw asymmetry index and a normalized sex–age–ethnicity-matched asymmetry signature weight. Facial asymmetry was also compared between British and Dutch controls and between survivors and their matched controls. Results Facial asymmetry was more pronounced with increasing age (P < 0.01) in British controls compared with Dutch controls (P = 0.04). Survivors developed more facial asymmetry than matched controls (P < 0.001). The clinical assessment of facial deformity correlated with the raw asymmetry index (r = 0.60, P < 0.001). Discussion 3D imaging can be used for objective measurement of facial asymmetry in HNRMS survivors. The raw asymmetry index correlated with a clinical assessment of facial deformity. Comparisons between treatment groups seemed inappropriate given the differences in facial asymmetry between British and Dutch controls. In future studies, pretreatment images could act as matched controls for posttreatment evaluation.
- Published
- 2017
- Full Text
- View/download PDF
17. Co-occurrence in body site of malformations and cancer
- Author
-
Fonnet E. Bleeker, Saskia M. J. Hopman, Raoul C.M. Hennekam, Human Genetics, Paediatric Oncology, Oncogenomics, Amsterdam Neuroscience, and Amsterdam Public Health
- Subjects
Male ,Hypospadias ,education.field_of_study ,Pathology ,medicine.medical_specialty ,Population ,Microtia ,Significant difference ,Cancer ,General Medicine ,Anatomy ,Biology ,medicine.disease ,Benign tumours ,Neoplasms ,Genetics ,medicine ,Humans ,Female ,education ,Genetics (clinical) ,Congenital Microtia - Abstract
In many malformation syndromes benign and malignant tumours develop more frequently than in the general population. Malformations result from an abnormal intrinsic developmental process. It can be hypothesised that disturbed regulation of cell growth as can become evident by the presence of benign and malignant tumours, which will occur at the same site of a malformation or at other sites at which the gene involved in the malformation is functioning. The present study aimed to compare the localisation of malignant and benign tumours to the localisation of major and minor characteristics of syndromes that have either of two malformations, i.e. microtia and hypospadias. To eliminate co-occurrence of a malformation syndrome and tumours by chance we confined evaluations to syndromes which have been described in >100 individuals. We identified 11 syndromes associated with microtia and 26 syndromes associated with hypospadias, for which co-localisation of (benign and malignant) tumours with (major and minor) syndrome characteristics was determined. In both groups of syndromes tumours were found to be localised at the same body site as the major and minor characteristics of the syndromes in two-third of the tumours. There was no significant difference in co-occurrence in site between benign and malignant tumours. We conclude that in two groups of malformation syndromes which go along with a different core malformation, benign and malignant tumours co-localise with the core malformation or with other sites at which the gene involved is functioning. This adds further proof that tumours in malformation syndromes can usually be explained by abnormal functioning of the same gene that has caused the malformation syndrome.
- Published
- 2014
18. Structural genome variations in individuals with childhood cancer and tumour predisposition syndromes
- Author
-
Raoul C.M. Hennekam, Huib N. Caron, Saskia M. J. Hopman, Annelies de Klein, H.J. Eussen, Simone Snijder, Johannes H. M. Merks, Hannie Douben, Clinical Genetics, Paediatric Oncology, Oncogenomics, CCA -Cancer Center Amsterdam, Human Genetics, ANS - Amsterdam Neuroscience, APH - Amsterdam Public Health, and Paediatrics
- Subjects
Proband ,Cancer Research ,Karyotype ,Biology ,Real-Time Polymerase Chain Reaction ,Polymorphism, Single Nucleotide ,Congenital Abnormalities ,Chromosome 15 ,SDG 3 - Good Health and Well-being ,Gene Duplication ,Neoplasms ,Gene duplication ,medicine ,Humans ,Genetic Predisposition to Disease ,Copy-number variation ,Child ,Rhabdomyosarcoma ,In Situ Hybridization, Fluorescence ,Genetics ,Genome, Human ,Cancer ,Syndrome ,medicine.disease ,Blepharophimosis ,Oncology ,Chromosome Inversion ,Precancerous Conditions ,SNP array - Abstract
Background Previous studies have shown a high prevalence of syndromes in children with cancer. We described four patterns of co-occurring morphological abnormalities indicating new tumour predisposition syndromes. These patterns were named after their key-abnormalities: blepharophimosis (BP), epicanthal folds (EF), asymmetric lower limbs (LLA) and Sydney creases (SC) pattern. The purpose of our study was to identify structural genomic variants possibly involved in these tumour predisposition syndromes. Patients and methods In 49 probands (13 from BP, nine from EF, 20 from LLA and seven from SC patterns respectively) karyotyping was performed. Copy number variation (CNV) in genomic DNA of the probands was analysed to detect microdeletions/-duplications using SNP array. FISH and quantitative-polymerase chain reaction (q-PCR) experiments were done to validate events identified by cytogenetic and CNV analysis. Results Cytogenetic analysis showed an inherited inversion of chromosome 15, inv(15) (q25q26) in a proband with LLA-pattern. Evaluation of the genes at the breakpoints made it unlikely that these explained the phenotype and tumour in this patient. Eleven CNV events met our inclusion criteria; three inherited CNV events involved an oncogene. A duplication involving BCL9 was identified in a proband diagnosed with Burkitt lymphoma. A duplication involving PCM1 was identified in a proband diagnosed with pre-B-ALL. Both probands showed the EF-pattern of morphological abnormalities. A deletion involving TRA@ was identified in two probands from the BP-pattern diagnosed with rhabdomyosarcoma and pre-B-ALL respectively. Conclusions We report on structural genomic variants in paediatric cancer patients with newly recognised tumour predisposition syndromes. We identify three CNV events which we suggest to be susceptibility loci.
- Published
- 2013
19. Phenotype, cancer risk, and surveillance in Beckwith-Wiedemann syndrome depending on molecular genetic subgroups
- Author
-
Eamonn R. Maher, Saskia M. J. Hopman, D.J. Kadouch, Jet Bliek, Fleur Vansenne, Marcel M.A.M. Mannens, Abdulla Ibrahim, Saskia M. Maas, Johannes H. M. Merks, Raoul C.M. Hennekam, Maher, Eamonn [0000-0002-6226-6918], Apollo - University of Cambridge Repository, ANS - Complex Trait Genetics, Human Genetics, CCA -Cancer Center Amsterdam, Graduate School, Dermatology, Paediatric Oncology, ACS - Amsterdam Cardiovascular Sciences, ARD - Amsterdam Reproduction and Development, APH - Amsterdam Public Health, and Paediatric Genetics
- Subjects
0301 basic medicine ,Oncology ,Male ,Beckwith-Wiedemann Syndrome ,Beckwith–Wiedemann syndrome ,CHILDREN ,Minisatellite Repeats ,030105 genetics & heredity ,Cohort Studies ,SYNDROME BWS ,Wiedemann–Beckwith syndrome ,0302 clinical medicine ,Neoplasms ,Genotype ,ONCOLOGY-GROUP ,Young adult ,Wiedemann-Beckwith syndrome ,Child ,Genetics (clinical) ,METHYLATION ,Wilms tumor ,genotype–phenotype correlation ,Phenotype ,Potassium Channels, Voltage-Gated ,030220 oncology & carcinogenesis ,Population Surveillance ,Cohort ,Female ,RNA, Long Noncoding ,Risk ,medicine.medical_specialty ,Hepatoblastoma ,Adolescent ,ALPHA-FETOPROTEIN ,Biology ,genotype-phenotype correlation ,IDIOPATHIC HEMIHYPERTROPHY ,03 medical and health sciences ,Genomic Imprinting ,Young Adult ,neuroblastoma ,Insulin-Like Growth Factor II ,Internal medicine ,Neuroblastoma ,Genetics ,medicine ,Journal Article ,Humans ,WILMS-TUMOR ,Genetic Association Studies ,Cancer ,Wilms' tumor ,GROWTH-RATE ,DNA Methylation ,hepatoblastoma ,medicine.disease ,Immunology ,Meta-Analysis - Abstract
Patients with Beckwith-Wiedemann syndrome (BWS) have an increased risk to develop cancer in childhood, especially Wilms tumor and hepatoblastoma. The risk varies depending on the cause of BWS. We obtained clinical and molecular data in our cohort of children with BWS, including tumor occurrences, and correlated phenotype and genotype. We obtained similar data from larger cohorts reported in the literature. Phenotype, genotype and tumor occurrence were available in 229 of our own patients. Minor differences in phenotype existed depending on genotype/epigenotype, similar to earlier studies. By adding patients from the literature, we obtained data on genotype and tumor occurrence of in total 1,971 BWS patients. Tumor risks were highest in the IC1 (H19/IGF2:IG-DMR) hypermethylation subgroup (28%) and pUPD subgroup (16%) and were lower in the KCNQ1OT1:TSS-DMR (IC2) subgroup (2.6%), CDKN1C (6.9%) subgroup, and the group in whom no molecular defect was detectable (6.7%). Wilms tumors (median age 24 months) were frequent in the IC1 (24%) and pUPD (7.9%) subgroups. Hepatoblastoma occurred mostly in the pUPD (3.5%) and IC2 (0.7%) subgroups, never in the IC1 and CDKN1C subgroups, and always before 30 months of age. In the CDKN1C subgroup 2.8% of patients developed neuroblastoma. We conclude tumor risks in BWS differ markedly depending on molecular background. We propose a differentiated surveillance protocol, based on tumor risks in the various molecular subgroups causing BWS. (C) 2016 Wiley Periodicals, Inc.
- Published
- 2016
- Full Text
- View/download PDF
20. PTEN hamartoma tumor syndrome and Gorham-Stout phenomenon
- Author
-
Marielle Alders, Saskia M. J. Hopman, Johannes H. M. Merks, Chantal M.A.M. van der Horst, Johannes Bras, Charis Eng, Raoul C.M. Hennekam, Rick R. van Rijn, Paediatric Oncology, Oncogenomics, Other Research, Radiology and Nuclear Medicine, Pathology, Amsterdam Cardiovascular Sciences, Amsterdam Gastroenterology Endocrinology Metabolism, Human Genetics, Plastic, Reconstructive and Hand Surgery, Amsterdam Neuroscience, Amsterdam Public Health, Paediatrics, and Cancer Center Amsterdam
- Subjects
Male ,Heterozygote ,Biology ,Germline ,Loss of heterozygosity ,Germline mutation ,Fatal Outcome ,stomatognathic system ,Genetics ,medicine ,Hamartoma ,PTEN ,Humans ,Family ,Genetics (clinical) ,Germ-Line Mutation ,PTEN Phosphohydrolase ,Multiple hamartoma syndrome ,Infant ,medicine.disease ,Mutation (genetic algorithm) ,Mutation testing ,Cancer research ,biology.protein ,Osteolysis, Essential ,Hamartoma Syndrome, Multiple - Abstract
PTEN hamartoma tumor syndrome (PHTS) is a group of syndromes caused by mutations in PTEN. GorhamStout phenomenon (GSP) is a rare condition characterized by proliferation of vascular structures in bones, resulting in progressive osteolysis. Here we present a 1-year-old boy with PHTS and GSP. The lesion that later proved to be GSP was evident from the age of 4 months, and became symptomatic at the age of 1 year. Eventually, he developed a fatal chylothorax. Mutation analysis revealed a germline heterozygous mutation c.517 C>T (p.Arg173Cys) in exon 6 of PTEN. Analysis of the lymphatic malformation (LM) tissue revealed no loss of heterozygosity (LOH) nor a second, somatic PTEN mutation of the remaining wild type allele. The germline p.Arg173Cys mutation was also present in the mother and the propositus' younger sister and brother. Further molecular work-up showed a heterozygous variant c.2180C>T (p.Ala727Val) FLT4 in the LM tissue, which was also present in the germline of mother and two siblings. GSP has not been reported before in a patient with a PTEN mutation. Up to this date, this mutation is the only genetic defect possibly involved in the etiology of GSP which is plausible given the known function of PTEN in angiogenic signaling. (C) 2012 Wiley Periodicals, Inc
- Published
- 2012
21. Abstract 4934: Mosaic RNase IIIb domain DICER1 mutations in children with multiple primary tumors
- Author
-
Leanne de Kock, David A. Plager, Annet van Hagen, William D. Foulkes, J. Hans Merks, Barbara Rivera Polo, Mona Wu, Evan Weber, Saskia M. J. Hopman, Dorothée Bouron-Dal Soglio, John R. Priest, Claudio Sandoval, Nancy Hamel, and Nelly Sabbaghian
- Subjects
Sanger sequencing ,Cancer Research ,Pathology ,medicine.medical_specialty ,Mutation ,RNase P ,Pleuropulmonary blastoma ,Biology ,medicine.disease ,medicine.disease_cause ,Molecular biology ,symbols.namesake ,Oncology ,medicine ,symbols ,Blastoma ,Missense mutation ,Carcinogenesis ,DICER1 Syndrome - Abstract
The DICER1 syndrome or pleuropulmonary blastoma (PPB) familial tumor and dysplasia syndrome (PPB FTDS) (OMIM #601200) is caused by heterozygous germ-line mutations in the microRNA maturation pathway gene, DICER1. Several rare phenotypes constitute the syndrome including PPB, cystic nephroma (CN), ovarian Sertoli-Leydig cell tumors (SLCT), intra-ocular medulloepithelioma, nasal chondromesenchymal hamartoma (NCMH), pineoblastoma, pituitary blastoma, multinodular goitre (MNG) and other rare childhood sarcomas and dysplasias. Highly characteristic second somatic mutations have been identified in DICER1-associated tumors, affecting amino acid residues central to the catalytic activity of the RNase IIIb domain. We describe four children with multiple primary tumours associated with the DICER1 syndrome. Sanger sequencing of constitutional DNA obtained from peripheral blood lymphocytes and/or saliva revealed no likely deleterious germ-line DICER1 mutations. We subsequently sequenced the region encoding the DICER1 RNase IIIa and RNase IIIb domains in gDNA extracted from the tumor samples, and noted the presence of the same RNase IIIb missense mutation in multiple tumors from each patient (Patient A: c.5437G>C; Patient B: c.5125G>A; Patient C: c.5439G>C; Patient D: c.5425G>A). We performed targeted capture followed by deep sequencing on DNA extracted from both normal and tumor tissue, which revealed the presence of the respective RNase IIIb mutations in a low percentage of sequencing reads (0.2 - 13%) in constitutional DNA from three of the four patients (Patients A, B and C). The relative abundance of the allele harboring the DICER1 RNase IIIb mutation was significantly higher in the tumors compared to normal tissue from the surrounding organ and/or distant sites. Taken together, these findings indicate a mosaic origin of the DICER1 RNase IIIb missense mutations. The mosaic origin of Patient D's mutation remains to be unequivocally established. We further hypothesized that, in the setting of a mosaic DICER1 RNase IIIb mutations, we might discover second somatic mutations outside of the RNase IIIb domain which initiate two-hit tumorigenesis as seen in most DICER1-related tumors. Sequencing data identified individually distinct second somatic, likely-deleterious DICER1 mutations in Patient A's left ovary SLCT and sinonasal inflammatory polyp, in Patient C's NCMH, and in Patient D's Type II PPB which arose in a pre-existing lung cyst. Each of these second somatic mutations are predicted to prematurely truncate the DICER1 protein. We demonstrate that mosaic DICER1 RNase IIIb missense mutations are an occasional and important genetic cause of the DICER1 syndrome in patients presenting with multiple primary tumors associated with the syndrome, and that for tumor initiation, they appear to be accompanied by second somatic truncating non-RNase IIIb DICER1 mutations. Citation Format: Leanne de Kock, Barbara Rivera Polo, Mona Wu, Evan Weber, Claudio Sandoval, Saskia M. J. Hopman, J. Hans M. Merks, Annet van Hagen, D. A. Plager, Nelly Sabbaghian, Nancy Hamel, Dorothée Bouron-Dal Soglio, John R. Priest, William D. Foulkes. Mosaic RNase IIIb domain DICER1 mutations in children with multiple primary tumors. [abstract]. In: Proceedings of the 106th Annual Meeting of the American Association for Cancer Research; 2015 Apr 18-22; Philadelphia, PA. Philadelphia (PA): AACR; Cancer Res 2015;75(15 Suppl):Abstract nr 4934. doi:10.1158/1538-7445.AM2015-4934
- Published
- 2015
- Full Text
- View/download PDF
22. The development of a clinical screening tool for tumour predisposition syndromes in childhood cancer patients
- Author
-
Saskia M. J. Hopman, Johannes H. M. Merks, Conny A. van der Meer, Corianne A. J. M. de Borgie, Anja Wagner, Trevor Cole, Charis Eng, Eric Legius, Eamonn R. Maher, Alain Verloes, Max M. van Noesel, David Viskochil, Huib N. Caron, Rosanna Weksberg, Leslie G. Biesecker, and Raoul C.M. Hennekam
- Subjects
Oncology ,medicine.medical_specialty ,Clinical screening ,business.industry ,Internal medicine ,Pediatrics, Perinatology and Child Health ,Childhood cancer ,Medicine ,business - Published
- 2013
- Full Text
- View/download PDF
23. Childhood Tumours with a High Probability of Being Part of a Tumour Predisposition Syndrome; Reason for Referral for Genetic Consultation
- Author
-
Charlotte J. Dommering, Lieke P.V. Berger, Fonnet E. Bleeker, Saskia M. J. Hopman, Raoul C.M. Hennekam, Tom G.W. Letteboer, Maran J. W. Olderode-Berends, Floor A. M. Postema, Johannes H. M. Merks, Anja Wagner, Marjolijn C.J. Jongmans, Cora M. Aalfs, and Clinical Genetics
- Subjects
0301 basic medicine ,Cancer Research ,Pediatrics ,medicine.medical_specialty ,Consensus ,Referral ,CARCINOMA ,Genetic predisposition to disease ,CHILDREN ,Genetic Counseling ,Review ,FREQUENCY ,RECOMMENDATIONS ,03 medical and health sciences ,0302 clinical medicine ,Neoplastic Syndromes, Hereditary ,SURVEILLANCE ,Carcinoma ,Journal Article ,Medicine ,Humans ,Clinical significance ,Genetic Predisposition to Disease ,Child ,Referral and Consultation ,Cancer ,GORLIN SYNDROME ,PEDIATRIC CANCER ,business.industry ,Paediatric oncology ,MUTATIONS ,Incidence (epidemiology) ,Incidence ,MALFORMATION SYNDROMES ,Paediatrics ,Geneticist ,medicine.disease ,Pediatric cancer ,030104 developmental biology ,Oncology ,MEDULLOBLASTOMA ,030220 oncology & carcinogenesis ,business ,Rare cancers Radboud Institute for Health Sciences [Radboudumc 9] - Abstract
Introduction: Recognising a tumour predisposition syndrome (TPS) in childhood cancer patients is of major clinical relevance. The presence of a TPS may be suggested by the type of tumour in the child. We present an overview of 23 childhood tumours that in themselves should be a reason to refer a child for genetic consultation. Methods: We performed a PubMed search to review the incidence of TPSs in children for 85 tumour types listed in the International Classification of Childhood Cancer third edition (ICCC-3). The results were discussed during a national consensus meeting with representative clinical geneticists from all six academic paediatric oncology centres in The Netherlands. A TPS incidence of 5% or more was considered a high probability and therefore in itself a reason for referral to a clinical geneticist. Results: The literature search resulted in data on the incidence of a TPS in 26 tumours. For 23/26 tumour types, a TPS incidence of 5% or higher was reported. In addition, during the consensus meeting the experts agreed that children with any carcinoma should always be referred for clinical genetic consultation as well, as it may point to a TPS. Conclusion: We present an overview of 23 paediatric tumours with a high probability of a TPS; this will facilitate paediatric oncologists to decide which patients should be referred for genetic consultation merely based on type of tumour. (C) 2017 Elsevier Ltd. All rights reserved.
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.