94 results on '"Pham VC"'
Search Results
2. Integration of molecular networking & in-silico MS/MS fragmentation: a novel dereplication strategy in natural products chemistry
- Author
-
Allard, PM, additional, Péresse, T, additional, Bisson, J, additional, Gindro, K, additional, Marcourt, L, additional, Pham, VC, additional, Roussi, F, additional, Litaudon, M, additional, and Wolfender, JL, additional
- Published
- 2016
- Full Text
- View/download PDF
3. Epigenetic regulation by polycomb repressive complex 1 promotes cerebral cavernous malformations.
- Author
-
Pham VC, Rödel CJ, Valentino M, Malinverno M, Paolini A, Münch J, Pasquier C, Onyeogaziri FC, Lazovic B, Girard R, Koskimäki J, Hußmann M, Keith B, Jachimowicz D, Kohl F, Hagelkruys A, Penninger JM, Schulte-Merker S, Awad IA, Hicks R, Magnusson PU, Faurobert E, Pagani M, and Abdelilah-Seyfried S
- Abstract
Cerebral cavernous malformations (CCMs) are anomalies of the cerebral vasculature. Loss of the CCM proteins CCM1/KRIT1, CCM2, or CCM3/PDCD10 trigger a MAPK-Krüppel-like factor 2 (KLF2) signaling cascade, which induces a pathophysiological pattern of gene expression. The downstream target genes that are activated by KLF2 are mostly unknown. Here we show that Chromobox Protein Homolog 7 (CBX7), component of the Polycomb Repressive Complex 1, contributes to pathophysiological KLF2 signaling during zebrafish cardiovascular development. CBX7/cbx7a mRNA is strongly upregulated in lesions of CCM patients, and in human, mouse, and zebrafish CCM-deficient endothelial cells. The silencing or pharmacological inhibition of CBX7/Cbx7a suppresses pathological CCM phenotypes in ccm2 zebrafish, CCM2-deficient HUVECs, and in a pre-clinical murine CCM3 disease model. Whole-transcriptome datasets from zebrafish cardiovascular tissues and human endothelial cells reveal a role of CBX7/Cbx7a in the activation of KLF2 target genes including TEK, ANGPT1, WNT9, and endoMT-associated genes. Our findings uncover an intricate interplay in the regulation of Klf2-dependent biomechanical signaling by CBX7 in CCM. This work also provides insights for therapeutic strategies in the pathogenesis of CCM., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
4. ATF6 Promotes Colorectal Cancer Growth and Stemness by Regulating the Wnt Pathway.
- Author
-
Rodvold JJ, Grimmer M, Ruiz K, Marsters SA, Oikonomidi I, Tan-Aristy E, Pham VC, Sarkar T, Harnoss JM, Shatz-Binder W, Modrusan ZD, Wu TD, Lill JR, Villemure E, Rudolph J, de Sousa E Melo F, and Ashkenazi A
- Subjects
- Humans, Cell Proliferation, Animals, Cell Line, Tumor, Mice, Gene Expression Regulation, Neoplastic, Colorectal Neoplasms pathology, Colorectal Neoplasms genetics, Colorectal Neoplasms metabolism, Wnt Signaling Pathway, Activating Transcription Factor 6 metabolism, Activating Transcription Factor 6 genetics, Neoplastic Stem Cells metabolism, Neoplastic Stem Cells pathology
- Abstract
Significance: ATF6 intervention reduces colorectal cancer cell and organoid viability by interrupting dysregulated Wnt signaling, identifying a novel facilitator and potential therapeutic target in colorectal cancer., (©2024 The Authors; Published by the American Association for Cancer Research.)
- Published
- 2024
- Full Text
- View/download PDF
5. Somatic Loss-of-Function PIK3R1 and Activating Non-hotspot PIK3CA Mutations Associated with Capillary Malformation with Dilated Veins (CMDV).
- Author
-
De Bortoli M, Queisser A, Pham VC, Dompmartin A, Helaers R, Boutry S, Claus C, De Roo AK, Hammer F, Brouillard P, Abdelilah-Seyfried S, Boon LM, and Vikkula M
- Subjects
- Humans, Animals, Male, Female, Adult, Loss of Function Mutation, Middle Aged, Endothelial Cells metabolism, Endothelial Cells pathology, Signal Transduction genetics, Veins abnormalities, Veins pathology, High-Throughput Nucleotide Sequencing, Child, Adolescent, Aged, Class I Phosphatidylinositol 3-Kinases genetics, Zebrafish genetics, Capillaries abnormalities, Capillaries pathology, Class Ia Phosphatidylinositol 3-Kinase genetics, Vascular Malformations genetics, Vascular Malformations pathology
- Abstract
Common capillary malformations are red vascular skin lesions, most commonly associated with somatic activating GNAQ or GNA11 mutations. We focused on capillary malformations lacking such a mutation to identify previously unreported genetic causes. We used targeted next-generation sequencing on 82 lesions. Bioinformatic analysis allowed the identification of 9 somatic pathogenic variants in PIK3R1 and PIK3CA, encoding for the regulatory and catalytic subunits of phosphoinositide 3-kinase, respectively. Recharacterization of these lesions unraveled a common phenotype: a pale capillary malformation associated with visible dilated veins. Primary endothelial cells from 2 PIK3R1-mutated lesions were isolated, and PI3k-Akt-mTOR and RAS-RAF-MAPK signaling were assessed by western blot. This unveiled an abnormal increase in Akt phosphorylation, effectively reduced by PI3K pathway inhibitors, such as mTOR, Akt, and PIK3CA inhibitors. The effects of mutant PIK3R1 were further studied using zebrafish embryos. Endothelium-specific expression of PIK3R1 mutants resulted in abnormal development of the posterior capillary-venous plexus. In summary, capillary malformation associated with visible dilated veins emerges as a clinical entity associated with somatic pathogenic variants in PIK3R1 or PIK3CA (nonhotspot). Our findings suggest that the activated Akt signaling can be effectively reversed by PI3K pathway inhibitors. In addition, the proposed zebrafish model holds promise as a valuable tool for future drug screening aimed at developing patient-tailored treatments., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
6. Antiviral miliusanes and isolation of an unprecedented miliusane dimer from Miliusa balansae.
- Author
-
Petit B, Marguerite E, Van Elslande E, Nedev H, Iorga BI, Pham VC, Doan TMH, Séron K, Litaudon M, El Kalamouni C, and Apel C
- Subjects
- Vero Cells, Chlorocebus aethiops, Humans, Animals, Molecular Structure, Phytochemicals pharmacology, Phytochemicals isolation & purification, Plant Components, Aerial chemistry, Rutaceae chemistry, SARS-CoV-2 drug effects, Plant Extracts pharmacology, Plant Extracts chemistry, Annonaceae chemistry, Antiviral Agents pharmacology, Antiviral Agents isolation & purification, Antiviral Agents chemistry
- Abstract
In an extensive screening endeavor for anti-coronaviral compounds, we examined 824 tropical plant extracts from the Annonaceae and Rutaceae families. The screening identified an ethyl acetate extract from the aerial parts of Miliusa balansae for its potent inhibitory activity against Human coronavirus HCoV-229E. Subsequent bioassay-guided fractionation of this extract revealed two unreported miliusanes including a complex dimeric structure and seven known compounds, comprising miliusane XXXVI, (+)-miliusol, bistyryls, styryl-pyranones, and the flavonoid rhamnetin. The absolute configuration of the new dimeric miliusane was determined by X-ray crystallography and a putative biogenetic origin was proposed. Investigation of the antiviral effect of these nine phytochemicals within HCoV-229E-infected Huh-7 cells showed that (+)-miliusol and miliusane XXXVI exert antiviral activity at non-cytotoxic concentrations, with IC
50 values of 1.15 μM and 19.20 μM, respectively. Furthermore, these compounds significantly inhibited SARS-CoV-2 infection in Vero cells, presenting IC50 values of 11.31 μM for (+)-miliusol and 17.92 μM for miliusane XXXVI. Additionally, both compounds exhibited a potent antiviral effect against the emergent mosquito-borne Zika virus, with IC50 values of 1.34 μM and 23.45 μM, respectively. Time-of-addition assays suggest that their mechanism of action might target later stages of the viral cycle, indicating potential modulation of specific cellular pathways. These findings reinforce the invaluable contribution of medicinal flora as reservoirs of natural antiviral agents and emphasize their prospective role in combatting viruses of medical interest., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023. Published by Elsevier B.V.)- Published
- 2024
- Full Text
- View/download PDF
7. BMI1 Inhibition Improves Lesion Burden in Cerebral Cavernous Malformations.
- Author
-
Valentino M, Malinverno M, Maderna C, Pham VC, Rödel CJ, Zanardi F, Arce M, Drufuca L, Rossetti G, Magnusson PU, Lampugnani MG, Dejana E, Abdelilah-Seyfried S, and Pagani M
- Subjects
- Humans, Animals, Polycomb Repressive Complex 1 genetics, Polycomb Repressive Complex 1 metabolism, Polycomb Repressive Complex 1 antagonists & inhibitors, Mice, Male, Hemangioma, Cavernous, Central Nervous System pathology
- Abstract
Competing Interests: M.P. is a member of the board of directors and a stakeholder of CheckmAb s.r.l. and is a recipient of a grant under a research agreement with Bristol-Myers Squibb. The other authors report no conflicts.
- Published
- 2024
- Full Text
- View/download PDF
8. Computational Methods Reveal a Series of Cyclic and Linear Lichenysins and Surfactins from the Vietnamese Marine Sediment-Derived Streptomyces Strain G222.
- Author
-
Castaldi A, Truong BN, Vu QT, Le THM, Marie A, Le Pennec G, Rouvier F, Brunel JM, Longeon A, Pham VC, Doan TMH, and Bourguet-Kondracki ML
- Subjects
- Humans, Chromatography, Liquid, RNA, Ribosomal, 16S, Vietnam, Tandem Mass Spectrometry, Geologic Sediments
- Abstract
The Streptomyces strain G222, isolated from a Vietnamese marine sediment, was confidently identified by 16 S rRNA gene sequencing. Its AcOEt crude extract was successfully analyzed using non-targeted LC-MS/MS analysis, and molecular networking, leading to a putative annotation of its chemical diversity thanks to spectral libraries from GNPS and in silico metabolite structure prediction obtained from SIRIUS combined with the bioinformatics tool conCISE (Consensus Annotation Propagation of in silico Elucidations). This dereplication strategy allowed the identification of an interesting cluster of a series of putative cyclic and linear lipopeptides of the lichenysin and surfactin families. Lichenysins ( 3 - 7 ) were isolated from the sub-fraction, which showed significant anti-biofilm activity against Pseudomonas aeruginosa MUC-N1. Their structures were confirmed by detailed 1D and 2D NMR spectroscopy (COSY, HSQC, HMBC, TOCSY, ROESY) recorded in CD
3 OH, and their absolute configurations were determined using the modified Marfey's method. The isolated lichenysins showed anti-biofilm activity at a minimum concentration of 100 µM. When evaluated for antibacterial activity against a panel of Gram-positive and Gram-negative strains, two isolated lichenysins exhibited selective activity against the MRSA strain without affecting its growth curve and without membranotropic activity. This study highlights the power of the MS/MS spectral similarity strategy using computational methods to obtain a cross-validation of the annotated molecules from the complex metabolic profile of a marine sediment-derived Streptomyces extract. This work provides the first report from a Streptomyces strain of combined cyclic and linear lichenysins and surfactins, known to be characteristic compounds of the genus Bacillus .- Published
- 2024
- Full Text
- View/download PDF
9. Naturally occurring phytic acid: an advanced Brønsted acid catalyst for direct amination reactions of allylic alcohols.
- Author
-
Pham VC, Chavasiri W, and Radtanajiravong L
- Abstract
Phytic acid is abundant in various plant-based foods and is considered agricultural waste. Here, we demonstrate the effectiveness of this organophosphorus acid as a sustainable catalyst for the direct amination reactions of allylic alcohols. This approach is successfully performed in air using technical grade solvents, affording allylanilines in moderate to excellent yields. Challenging electron-rich anilines react effectively, and their corresponding Friedel-Crafts side products can be minimised under the optimised reaction conditions. A variety of asymmetrically substituted allylic alcohols are tolerated, while the scope is extended to amide, and C -, O - and S -nucleophiles.
- Published
- 2024
- Full Text
- View/download PDF
10. Five undescribed aryltetralin lignans with cytotoxic activities from the fruits of Cleistanthus eberhardtii.
- Author
-
Nguyen LH, Nguyen TH, Tran VH, Litaudon M, Nguyen VT, Doan TMH, and Pham VC
- Subjects
- Humans, Cell Line, Tumor, Fruit chemistry, Molecular Structure, Antineoplastic Agents, Phytogenic pharmacology, Antineoplastic Agents, Phytogenic chemistry, Lignans pharmacology, Lignans chemistry, Antineoplastic Agents, Malpighiales
- Abstract
Five undescribed lignans, cleiseberharnins A-D (1-4), cleiseberharside A (5) were isolated from the fruits of Cleistanthus eberhartii (Phyllanthaceae), together with six known aryltetralin lignans, cleistantoxin (6), picroburseranin (7), neocleistantoxin (8), 7-hydroxypicropolygamain (9), cleisindoside D (10), and cleisindoside A (11). Their structures and relative configurations were established by analysis of HRESIMS and NMR data, and quantum chemical calculations of J
H,H coupling constants. The absolute configurations of 1-5 were determined by analysis of their experimental CD spectra and comparison with calculated electronic circular dichroism (ECD) spectra. All compounds (1-11) were evaluated for their cytotoxicity against KB, MCF-7, HepG-2, and Lu-1 human cancer cell lines. Among the tested compounds, compounds 6 and 7 showed strong activity against KB, MCF7, HepG2 and Lu-1 cell lines with IC50 values in the range of 0.02-0.62 μM. Compound 1 showed activity against three cancer cell lines KB, HepG2, and Lu-1 with IC50 values of 6.98, 7.61 and 11.75 μM, respectively. Compound 2 exhibited a selective inhibition with moderate cytotoxicity against Lu-1 with IC50 value of 15.30 μM. Compounds 4, 5 and 9 showed moderate activity against the three cancer cell lines with IC50 values in the range of 8.73-19.70 μM., Competing Interests: Declaration of competing interest The authors declare no conflict of interest., (Copyright © 2023. Published by Elsevier B.V.)- Published
- 2024
- Full Text
- View/download PDF
11. Two new flavonoids with antimicrobial activity from the roots of Byttneria aspera Colebr. ex Wall (Malvaceae).
- Author
-
Truong BN, Doan TMH, Nguyen TL, Vu VN, Tran VH, Litaudon M, and Pham VC
- Abstract
Two new flavonoids, 4',5,7-trihydroxy-5'-methoxy-6,8-dimethylisoflavone ( 1 ) and 2',5',7-trihydroxy-5-methoxy-6,8-dimethylflavanone ( 2 ) together with the known flavonoids 4´,5,7-trihydroxy-3´-methoxy-6.8-dimethylflavone ( 3 ), epigallocatechin ( 4 ), 4´-O-methylepicatechin ( 5 ) and quercetin ( 6 ) were isolated from the roots of Byttneria aspera . The structures of these compounds were determined by means of spectroscopic methods. Compounds 1 - 6 were submitted to cytotoxic activity assays against three cancer cell lines including KB, MCF7 and A549, as well as their antimicrobial activity against a panel of clinically significant microorganisms. Compound 6 showed moderate cytotoxic activity with IC
50 values of 12.7, 56.9 and 17.5 µM against KB, MCF7 and A549. Interestingly, the new compounds 1 and 2 exhibits antimicrobial activity, with compound 1 displaying selective antifungal activity against Candida albicans giving an MIC value of 128 µg/mL, compared to cyclohexamide with 32 µg/mL, while compound 2 shows potent inhibition of the Gram-positive bacterium Enterococcus faecalis displaying an MIC of 64 µg/mL, compared to streptomycin with 256 µg/mL.- Published
- 2023
- Full Text
- View/download PDF
12. Erratum: Closing the gap for cervical cancer research in Vietnam: current perspectives and future opportunities: a report from the 5th Gynecologic Cancer InterGroup (GCIG) Cervical Cancer Research Network (CCRN) Education Symposium.
- Author
-
Phan NTH, Tran QT, Nguyen NPT, Nguyen HT, Tran LDN, Pham VC, Bennett K, Chávez-Blanco A, Plante M, Lecuru FR, Suh DH, Nout R, and Tan DSP
- Abstract
This corrects the article on p. e88 in vol. 34, PMID: 37668081., (© 2023. Asian Society of Gynecologic Oncology, Korean Society of Gynecologic Oncology, and Japan Society of Gynecologic Oncology.)
- Published
- 2023
- Full Text
- View/download PDF
13. Structure-Based Design of a Lead Compound Derived from Natural Schweinfurthins with Antitumor Properties That Target Oxysterol-Binding Protein.
- Author
-
Jézéquel G, Rampal C, Guimard C, Kovacs D, Polidori J, Bigay J, Bignon J, Askenatzis L, Litaudon M, Pham VC, Huong DTM, Nguyen AL, Pruvost A, Virolle T, Mesmin B, Desrat S, Antonny B, and Roussi F
- Subjects
- Humans, Cholesterol metabolism, Receptors, Steroid metabolism, Oxysterols
- Abstract
Schweinfurthins (SWs) are naturally occurring prenylated stilbenes with promising anticancer properties. They act through a novel mechanism of action similar to that of other families of natural compounds. Their known target, oxysterol-binding protein (OSBP), plays a crucial role in controlling the intracellular distribution of cholesterol. We synthesized 15 analogues of SWs and demonstrated for the first time that their cytotoxicity as well as that of natural derivatives correlates with their affinity for OSBP. Through this extensive SAR study, we selected one synthetic analogue obtained in one step from SW-G. Using its fluorescence properties, we showed that this compound recapitulates the effect of natural SW-G in cells and confirmed that it leads to cell death via the same mechanism. Finally, after pilot PK experiments, we provided the first evidence of its in vivo efficacy in combination with temozolomide in a patient-derived glioblastoma xenograft model.
- Published
- 2023
- Full Text
- View/download PDF
14. Closing the gap for cervical cancer research in Vietnam: current perspectives and future opportunities: a report from the 5th Gynecologic Cancer InterGroup (GCIG) Cervical Cancer Research Network (CCRN) Education Symposium.
- Author
-
Phan NTH, Tran QT, Nguyen NPT, Nguyen HT, Tran LDN, Pham VC, Bennett K, Chavez-Blanco A, Plante M, Suh DH, Nout R, and Tan DSP
- Subjects
- Female, Humans, Vietnam, Uterine Cervical Neoplasms therapy, Genital Neoplasms, Female therapy
- Abstract
Competing Interests: No potential conflict of interest relevant to this article was reported.
- Published
- 2023
- Full Text
- View/download PDF
15. New Phenolic Lipids from the Leaves of Clausena harmandiana Inhibit SARS-CoV-2 Entry into Host Cells.
- Author
-
Chambon M, Herrscher C, Al Halabi D, François N, Belouzard S, Boutet S, Pham VC, Doan TMH, Séron K, Mavingui P, Litaudon M, El Kalamouni C, and Apel C
- Subjects
- Humans, SARS-CoV-2, Pandemics, Antiviral Agents pharmacology, Plant Leaves, Lipids, COVID-19, Clausena chemistry
- Abstract
Induced by the spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the COVID-19 pandemic underlined the clear need for antivirals against coronaviruses. In an effort to identify new inhibitors of SARS-CoV-2, a screening of 824 extracts prepared from various parts of 400 plant species belonging to the Rutaceae and Annonaceae families was conducted using a cell-based HCoV-229E inhibition assay. Due to its significant activity, the ethyl acetate extract of the leaves of Clausena harmandiana was selected for further chemical and biological investigations. Mass spectrometry-guided fractionation afforded three undescribed phenolic lipids ( 1 - 3 ), whose structures were determined via spectroscopic analysis. The absolute configurations of 1 and 2 were determined by analyzing Mosher ester derivatives. The antiviral activity against SARS-CoV-2 was subsequently shown, with IC
50 values of 0.20 and 0.05 µM for 2 and 3 , respectively. The mechanism of action was further assessed, showing that both 2 and 3 are inhibitors of coronavirus entry by acting directly on the viral particle. Phenolic lipids from Clausena harmandiana might be a source of new antiviral agents against human coronaviruses.- Published
- 2023
- Full Text
- View/download PDF
16. Targeting MCL-1 and BCL-2 with polatuzumab vedotin and venetoclax overcomes treatment resistance in R/R non-Hodgkin lymphoma: Results from preclinical models and a Phase Ib study.
- Author
-
Lasater EA, Amin DN, Bannerji R, Mali RS, Barrett K, Rys RN, Oeh J, Lin E, Sterne-Weiler T, Ingalla ER, Go M, Yu SF, Krem MM, Arthur C, Hahn U, Johnston A, Karur V, Khan N, Marlton P, Phillips T, Gritti G, Seymour JF, Tani M, Yuen S, Martin S, Chang MT, Rose CM, Pham VC, Polson AG, Chang Y, Wever C, Johnson NA, Jiang Y, Hirata J, Sampath D, Musick L, Flowers CR, and Wertz IE
- Subjects
- Humans, Myeloid Cell Leukemia Sequence 1 Protein therapeutic use, Antineoplastic Combined Chemotherapy Protocols adverse effects, Rituximab therapeutic use, Lymphoma, Non-Hodgkin drug therapy, Lymphoma, Non-Hodgkin pathology, Immunoconjugates therapeutic use
- Abstract
The treatment of patients with relapsed or refractory lymphoid neoplasms represents a significant clinical challenge. Here, we identify the pro-survival BCL-2 protein family member MCL-1 as a resistance factor for the BCL-2 inhibitor venetoclax in non-Hodgkin lymphoma (NHL) cell lines and primary NHL samples. Mechanistically, we show that the antibody-drug conjugate polatuzumab vedotin promotes MCL-1 degradation via the ubiquitin/proteasome system. This targeted MCL-1 antagonism, when combined with venetoclax and the anti-CD20 antibodies obinutuzumab or rituximab, results in tumor regressions in preclinical NHL models, which are sustained even off-treatment. In a Phase Ib clinical trial (NCT02611323) of heavily pre-treated patients with relapsed or refractory NHL, 25/33 (76%) patients with follicular lymphoma and 5/17 (29%) patients with diffuse large B-cell lymphoma achieved complete or partial responses with an acceptable safety profile when treated with the recommended Phase II dose of polatuzumab vedotin in combination with venetoclax and an anti-CD20 antibody., (© 2023 The Authors. American Journal of Hematology published by Wiley Periodicals LLC.)
- Published
- 2023
- Full Text
- View/download PDF
17. TEAD Proteins Associate With DNA Repair Proteins to Facilitate Cellular Recovery From DNA Damage.
- Author
-
Calses PC, Pham VC, Guarnaccia AD, Choi M, Verschueren E, Bakker ST, Pham TH, Hinkle T, Liu C, Chang MT, Kljavin N, Bakalarski C, Haley B, Zou J, Yan C, Song X, Lin X, Rowntree R, Ashworth A, Dey A, and Lill JR
- Subjects
- Humans, Carcinogenesis metabolism, DNA-Binding Proteins metabolism, Transcription Factors metabolism, DNA Damage, DNA Repair physiology, TEA Domain Transcription Factors metabolism
- Abstract
Transcriptional enhanced associate domain family members 1 to 4 (TEADs) are a family of four transcription factors and the major transcriptional effectors of the Hippo pathway. In order to activate transcription, TEADs rely on interactions with other proteins, such as the transcriptional effectors Yes-associated protein and transcriptional co-activator with PDZ-binding motif. Nuclear protein interactions involving TEADs influence the transcriptional regulation of genes involved in cell growth, tissue homeostasis, and tumorigenesis. Clearly, protein interactions for TEADs are functionally important, but the full repertoire of TEAD interaction partners remains unknown. Here, we employed an affinity purification mass spectrometry approach to identify nuclear interacting partners of TEADs. We performed affinity purification mass spectrometry experiment in parallel in two different cell types and compared a wildtype TEAD bait protein to a nuclear localization sequence mutant that does not localize to the nucleus. We quantified the results using SAINT analysis and found a significant enrichment of proteins linked to DNA damage including X-ray repair cross-complementing protein 5 (XRCC5), X-ray repair cross-complementing protein 6 (XRCC6), poly(ADP-ribose) polymerase 1 (PARP1), and Rap1-interacting factor 1 (RIF1). In cellular assays, we found that TEADs co-localize with DNA damage-induced nuclear foci marked by histone H2AX phosphorylated on S139 (γH2AX) and Rap1-interacting factor 1. We also found that depletion of TEAD proteins makes cells more susceptible to DNA damage by various agents and that depletion of TEADs promotes genomic instability. Additionally, depleting TEADs dampens the efficiency of DNA double-stranded break repair in reporter assays. Our results connect TEADs to DNA damage response processes, positioning DNA damage as an important avenue for further research of TEAD proteins., Competing Interests: Conflict of interest A. A. is co-founder of Tango Therapeutics, Azkarra Therapeutics, Ovibio Corporation; a consultant for SPARC, Bluestar, TopoRx, ProLynx, Earli, Cura, GSK; a member of the SAB of Genentech and GLAdiator; receives grant/research support from SPARC and AstraZeneca; holds patents on the use of PARP inhibitors held jointly with AstraZeneca which he has benefited financially (and may do so in the future). All Genentech authors are employees and shareholders at Roche and have no conflict of interest., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
18. Systematic pharmacological analysis of agonistic and antagonistic fibroblast growth factor receptor 1 MAbs reveals a similar unique mode of action.
- Author
-
Chan J, Chan J, Shao L, Stawicki SS, Pham VC, Akita RW, Hafner M, Crocker L, Yu K, Koerber JT, Schaefer G, and Comps-Agrar L
- Subjects
- Animals, Humans, Mice, Neoplasms, Receptor, Fibroblast Growth Factor, Type 1 agonists, Receptor, Fibroblast Growth Factor, Type 1 antagonists & inhibitors, Signal Transduction, Antibodies, Monoclonal pharmacology
- Abstract
Fibroblast growth factor receptor 1 (FGFR1) is a receptor tyrosine kinase that plays a major role in developmental processes and metabolism. The dysregulation of FGFR1 through genetic aberrations leads to skeletal and metabolic diseases as well as cancer. For this reason, FGFR1 is a promising therapeutic target, yet a very challenging one due to potential on-target toxicity. More puzzling is that both agonistic and antagonistic FGFR1 antibodies are reported to exhibit similar toxicity profiles in vivo, namely weight loss. In this study, we aimed to assess and compare the mechanism of action of these molecules to better understand this apparent contradiction. By systematically comparing the binding of these antibodies and the activation or the inhibition of the major FGFR1 signaling events, we demonstrated that the molecules displayed similar properties and can behave either as an agonist or antagonist depending on the presence or the absence of the endogenous ligand. We further demonstrated that these findings translated in xenografts mice models. In addition, using time-resolved FRET and mass spectrometry analysis, we showed a functionally distinct FGFR1 active conformation in the presence of an antibody that preferentially activates the FGFR substrate 2 (FRS2)-dependent signaling pathway, demonstrating that modulating the geometry of a FGFR1 dimer can effectively change the signaling outputs and ultimately the activity of the molecule in preclinical studies. Altogether, our results highlighted how bivalent antibodies can exhibit both agonistic and antagonistic activities and have implications for targeting other receptor tyrosine kinases with antibodies., Competing Interests: Conflict of interest All authors were employees of Genentech, Inc. at the time of this study., (Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
19. Metabolomics with multi-block modelling of mass spectrometry and nuclear magnetic resonance in order to discriminate Haplosclerida marine sponges.
- Author
-
Beniddir MA, Le Moyec L, Triba MN, Longeon A, Deville A, Blond A, Pham VC, de Voogd NJ, and Bourguet-Kondracki ML
- Subjects
- Animals, Chromatography, Liquid, Magnetic Resonance Spectroscopy, Metabolomics methods, Porifera chemistry, Tandem Mass Spectrometry
- Abstract
A comprehensive metabolomic strategy, integrating
1 H NMR and MS-based multi-block modelling in conjunction with multi-informational molecular networking, has been developed to discriminate sponges of the order Haplosclerida, well known for being taxonomically contentious. An in-house collection of 33 marine sponge samples belonging to three families (Callyspongiidae, Chalinidae, Petrosiidae) and four different genera (Callyspongia, Haliclona, Petrosia, Xestospongia) was investigated using LC-MS/MS, molecular networking, and the annotations processes combined with NMR data and multivariate statistical modelling. The combination of MS and NMR data into supervised multivariate models led to the discrimination of, out of the four genera, three groups based on the presence of metabolites, not necessarily previously described in the Haplosclerida order. Although these metabolomic methods have already been applied separately, it is the first time that a multi-block untargeted approach using MS and NMR has been combined with molecular networking and statistically analyzed, pointing out the pros and cons of this strategy., (© 2022. Springer-Verlag GmbH Germany, part of Springer Nature.)- Published
- 2022
- Full Text
- View/download PDF
20. Automated Microbial Library Generation Using the Bioinformatics Platform IDBac.
- Author
-
Clark CM, Nguyen L, Pham VC, Sanchez LM, and Murphy BT
- Subjects
- Bacteria genetics, Gene Library, Humans, Phylogeny, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Biological Products chemistry, Computational Biology
- Abstract
Libraries of microorganisms have served as a cornerstone of therapeutic drug discovery, though the continued re-isolation of known natural product chemical entities has remained a significant obstacle to discovery efforts. A major contributing factor to this redundancy is the duplication of bacterial taxa in a library, which can be mitigated through the use of a variety of DNA sequencing strategies and/or mass spectrometry-informed bioinformatics platforms so that the library is created with minimal phylogenetic, and thus minimal natural product overlap. IDBac is a MALDI-TOF mass spectrometry-based bioinformatics platform used to assess overlap within collections of environmental bacterial isolates. It allows environmental isolate redundancy to be reduced while considering both phylogeny and natural product production. However, manually selecting isolates for addition to a library during this process was time intensive and left to the researcher's discretion. Here, we developed an algorithm that automates the prioritization of hundreds to thousands of environmental microorganisms in IDBac. The algorithm performs iterative reduction of natural product mass feature overlap within groups of isolates that share high homology of protein mass features. Employing this automation serves to minimize human bias and greatly increase efficiency in the microbial strain prioritization process.
- Published
- 2022
- Full Text
- View/download PDF
21. Telosmoside A 21 , a new steroid glycoside from the roots of Jasminanthes tuyetanhiae .
- Author
-
Pham TH, Nguyen VK, Tran TN, Pham VC, Huynh GH, Phan TTT, Nguyen NN, Le TTA, Sichaem J, Nguyen KP, and Duong TH
- Subjects
- Glycosides, Molecular Structure, Plant Roots, Steroids, Apocynaceae
- Abstract
A new glycoside, telosmoside A
21 ( 1 ) and two known compounds, telosmoside A6 ( 2 ) and telosmoside A1 ( 3 ), were isolated from the roots of Jasminanthes tuyetanhiae . The structure of compound 1 was identified from its spectroscopic data and by comparison with the literature.- Published
- 2022
- Full Text
- View/download PDF
22. The neutrophil protein CD177 is a novel PDPN receptor that regulates human cancer-associated fibroblast physiology.
- Author
-
Astarita JL, Keerthivasan S, Husain B, Şenbabaoğlu Y, Verschueren E, Gierke S, Pham VC, Peterson SM, Chalouni C, Pierce AA, Lill JR, Gonzalez LC, Martinez-Martin N, and Turley SJ
- Subjects
- Apoptosis, Biomarkers, Tumor genetics, Cancer-Associated Fibroblasts immunology, Cancer-Associated Fibroblasts metabolism, Cell Proliferation, Colorectal Neoplasms genetics, Colorectal Neoplasms immunology, Colorectal Neoplasms metabolism, GPI-Linked Proteins genetics, GPI-Linked Proteins metabolism, Humans, Isoantigens genetics, Membrane Glycoproteins genetics, Neutrophils immunology, Neutrophils metabolism, Prognosis, Receptors, Cell Surface genetics, Survival Rate, Tumor Cells, Cultured, Biomarkers, Tumor metabolism, Cancer-Associated Fibroblasts pathology, Colorectal Neoplasms pathology, Gene Expression Regulation, Neoplastic, Isoantigens metabolism, Membrane Glycoproteins metabolism, Receptors, Cell Surface metabolism, Tumor Microenvironment
- Abstract
The cancer-associated fibroblast (CAF) marker podoplanin (PDPN) is generally correlated with poor clinical outcomes in cancer patients and thus represents a promising therapeutic target. Despite its biomedical relevance, basic aspects of PDPN biology such as its cellular functions and cell surface ligands remain poorly uncharacterized, thus challenging drug development. Here, we utilize a high throughput platform to elucidate the PDPN cell surface interactome, and uncover the neutrophil protein CD177 as a new binding partner. Quantitative proteomics analysis of the CAF phosphoproteome reveals a role for PDPN in cell signaling, growth and actomyosin contractility, among other processes. Moreover, cellular assays demonstrate that CD177 is a functional antagonist, recapitulating the phenotype observed in PDPN-deficient CAFs. In sum, starting from the unbiased elucidation of the PDPN co-receptome, our work provides insights into PDPN functions and reveals the PDPN/CD177 axis as a possible modulator of fibroblast physiology in the tumor microenvironment., Competing Interests: Y.S., S.G., V.C.P., C.C., J.R.L., and S.J.T. are Genentech employees and own shares in the Genentech/Roche group. J.L.A, S.K., B.H., E.V., S.M.P., A.A.P., L.G. and N.M.M. were employees of Roche when the data in this paper was generated.
- Published
- 2021
- Full Text
- View/download PDF
23. New Polyesterified Ursane Derivatives from Leaves of Maesa membranacea and Their Cytotoxic Activity.
- Author
-
Michalska K, Galanty A, Le TN, Malarz J, Vuong NQ, Pham VC, and Stojakowska A
- Subjects
- Caco-2 Cells, HT29 Cells, Humans, Neoplasms metabolism, Neoplasms pathology, PC-3 Cells, Antineoplastic Agents, Phytogenic chemistry, Antineoplastic Agents, Phytogenic isolation & purification, Antineoplastic Agents, Phytogenic pharmacology, Cytotoxins chemistry, Cytotoxins isolation & purification, Cytotoxins pharmacology, Maesa chemistry, Neoplasms drug therapy, Plant Leaves chemistry, Triterpenes chemistry, Triterpenes isolation & purification, Triterpenes pharmacology
- Abstract
Maesa membranacea A. DC. (Primulaceae) is a plant species that has been frequently used by practitioners of the traditional ethnobotany knowledge from northern and central Vietnam. However, the chemical constituents of the plant remained unknown until recently. Chromatographic separation of a chloroform-soluble fraction of extract from leaves of M. membranacea led to the isolation of two new polyesterified ursane triterpenes ( 1 - 2 ) and two known apocarotenoids: (+)-dehydrovomifoliol ( 3 ) and (+)-vomifoliol ( 4 ). The chemical structures of the undescribed triterpenoids were elucidated using 1D and 2D MNR and HRESIMS spectral data as 2 α ,6 β ,22 α -triacetoxy-11 α -(2-methylbutyryloxy)-urs-12-ene-3 α ,20 β -diol ( 1 ) and 2 α ,6 β ,22 α -triacetoxy-urs-12-ene-3 α ,11 α ,20 β -triol ( 2 ). The newly isolated triterpenoids were tested for their cytotoxic activity in vitro against two melanoma cell lines (HTB140 and A375), normal skin keratinocytes (HaCaT), two colon cancer cell lines (HT29 and Caco-2), two prostate cancer cell lines (DU145 and PC3) and normal prostate epithelial cells (PNT-2). Doxorubicin was used as a reference cytostatic drug. The 2 α ,6 β ,22 α -triacetoxy-11 α -(2-methylbutyryloxy)-urs-12-ene-3 α ,20 β -diol demonstrated cytotoxic activity against prostate cancer cell lines (Du145-IC
50 = 35.8 µg/mL, PC3-IC50 = 41.6 µg/mL), and at a concentration of 100 µg/mL reduced viability of normal prostate epithelium (PNT-2) cells by 41%.- Published
- 2021
- Full Text
- View/download PDF
24. Rare flavonoids and sesquiterpenoids isolated from the leaves of Goniothalamus gracilipes.
- Author
-
Trieu QH, Pham VC, Retailleau P, Nguyen VH, Litaudon M, and Doan TMH
- Subjects
- Anti-Bacterial Agents isolation & purification, Antineoplastic Agents, Phytogenic isolation & purification, Cell Line, Tumor, Flavonoids isolation & purification, Humans, Molecular Structure, Phytochemicals isolation & purification, Phytochemicals pharmacology, Plant Leaves chemistry, Sesquiterpenes isolation & purification, Staphylococcus aureus drug effects, Vietnam, Anti-Bacterial Agents pharmacology, Antineoplastic Agents, Phytogenic pharmacology, Flavonoids pharmacology, Goniothalamus chemistry, Sesquiterpenes pharmacology
- Abstract
Three previously undescribed benzopyranyl sesquiterpenes gracilipins BD (1-3) and two flavonoids 5,4'-dihydroxy-6-(2-hydroxybenzyl)-3,7,3'-trimethoxyflavone (4), and 5,4'-dihydroxy-8-(2-hydroxybenzyl)-3,7-dimethoxyflavone (5) were isolated from the leaves of Goniothalamus gracilipes (Annonaceae). Their structures were determined by analyses of MS and 2D NMR data. The absolute configurations of 1 were established by analysis of X-ray diffraction data. Cytotoxic evaluation of the compounds 1-5 against four cancer cell lines (KB, LU-1, HepG-2 and MCF-7) indicated that compound 5 had inhibitory activity against HepG-2 cell line with IC
50 value of 16.7 μM. All new compounds (1-5) were evaluated for their antimicrobial activity against a panel of clinically significant microorganisms. Compound 2 showed significant antimicrobial effect on Staphylococus aureus with MIC value of 32 μg/mL., (Copyright © 2021. Published by Elsevier B.V.)- Published
- 2021
- Full Text
- View/download PDF
25. Mechanosensitive Notch-Dll4 and Klf2-Wnt9 signaling pathways intersect in guiding valvulogenesis in zebrafish.
- Author
-
Paolini A, Fontana F, Pham VC, Rödel CJ, and Abdelilah-Seyfried S
- Subjects
- Animals, Animals, Genetically Modified metabolism, Embryo, Nonmammalian metabolism, Embryo, Nonmammalian pathology, Embryonic Development, Endocardium cytology, Heart Valves growth & development, Heart Valves metabolism, Heart Valves pathology, Intracellular Signaling Peptides and Proteins antagonists & inhibitors, Intracellular Signaling Peptides and Proteins genetics, Intracellular Signaling Peptides and Proteins metabolism, Kruppel-Like Transcription Factors genetics, Kruppel-Like Transcription Factors metabolism, Mitogen-Activated Protein Kinase 7 metabolism, Morpholinos metabolism, Receptors, Neurotransmitter antagonists & inhibitors, Receptors, Neurotransmitter genetics, Receptors, Neurotransmitter metabolism, Receptors, Notch genetics, Receptors, Notch metabolism, Wnt Proteins antagonists & inhibitors, Wnt Proteins genetics, Wnt Proteins metabolism, Zebrafish metabolism, Zebrafish Proteins antagonists & inhibitors, Zebrafish Proteins genetics, Endocardium metabolism, Mechanotransduction, Cellular, Signal Transduction, Zebrafish Proteins metabolism
- Abstract
In the zebrafish embryo, the onset of blood flow generates fluid shear stress on endocardial cells, which are specialized endothelial cells that line the interior of the heart. High levels of fluid shear stress activate both Notch and Klf2 signaling, which play crucial roles in atrioventricular valvulogenesis. However, it remains unclear why only individual endocardial cells ingress into the cardiac jelly and initiate valvulogenesis. Here, we show that lateral inhibition between endocardial cells, mediated by Notch, singles out Delta-like-4-positive endocardial cells. These cells ingress into the cardiac jelly, where they form an abluminal cell population. Delta-like-4-positive cells ingress in response to Wnt9a, which is produced in parallel through an Erk5-Klf2-Wnt9a signaling cascade also activated by blood flow. Hence, mechanical stimulation activates parallel mechanosensitive signaling pathways that produce binary effects by driving endocardial cells toward either luminal or abluminal fates. Ultimately, these cell fate decisions sculpt cardiac valve leaflets., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2021 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
26. Metabolism of Diterpenoids Derived from the Bark of Cinnamomum cassia in Human Liver Microsomes.
- Author
-
Choi SM, Pham VC, Lee S, and Kim JA
- Abstract
Cinnamomum cassia L. is used as a spice and flavoring agent as well as a traditional medicine worldwide. Diterpenoids, a class of compounds present in C. cassia , have various pharmacological effects, such as anti-inflammatory, antitumor, and antibacterial activities; however, there are insufficient studies on the metabolism of diterpenoids. In this study, the metabolism of seven diterpenoids, namely, anhydrocinnzeylanol, anhydrocinnzeylanine (AHC), cinncassiol A, cinncassiol B, cinnzeylanol, cinnzeylanone, and cinnzeylanine, obtained from the bark of C. cassia was studied in human liver microsomes (HLMs). All studied diterpenoids, except for AHC, exhibited strong metabolic stability; however, AHC was rapidly metabolized to 3% in HLMs in the presence of β-NADPH. Using a high-resolution quadrupole-orbitrap mass spectrometer, 20 metabolites were identified as dehydrogenated metabolites ( M1 - M3 ), dehydrogenated and oxidated metabolites ( M4 - M10 ), mono-oxidated metabolites ( M11 - M13 ), or dioxidated metabolites ( M14 - M20 ). In addition, CYP isoforms involved in AHC metabolism were determined by profiling metabolites produced after incubation in 11 recombinant cDNA-expressed CYP isoforms. Thus, the diterpenoid compound AHC was identified in a metabolic pathway involving CYP3A4 in HLMs.
- Published
- 2021
- Full Text
- View/download PDF
27. Molecular design of anticancer drugs from marine fungi derivatives.
- Author
-
Cao DT, Huong Doan TM, Pham VC, Minh Le TH, Chae JW, Yun HY, Na MK, Kim YH, Pham MQ, and Nguyen VH
- Abstract
Heat shock protein 90 (Hsp90) is one of the most potential targets in cancer therapy. We have demonstrated using a combination of molecular docking and fast pulling of ligand (FPL) simulations that marine fungi derivatives can be possible inhibitors, preventing the biological activity of Hsp90. The computational approaches were validated and compared with previous experiments. Based on the benchmark of available inhibitors of Hsp90, the GOLD docking package using the ChemPLP scoring function was found to be superior over both Autodock Vina and Autodock4 in the preliminary estimation of the ligand-binding affinity and binding pose with the Pearson correlation, R = -0.62. Moreover, FPL calculations were also indicated as a suitable approach to refine docking simulations with a correlation coefficient with the experimental data of R = -0.81. Therefore, the binding affinity of marine fungi derivatives to Hsp90 was evaluated. Docking and FPL calculations suggest that five compounds including 23, 40, 46, 48, and 52 are highly potent inhibitors for Hsp90. The obtained results enhance cancer therapy research., Competing Interests: The authors declare no potential conflicts of interest with respect to the research, authorship, and/or publication of this article., (This journal is © The Royal Society of Chemistry.)
- Published
- 2021
- Full Text
- View/download PDF
28. Cytotoxic phenolic compounds isolated from the fruits of Macaranga denticulata .
- Author
-
Le TNV, Truong BN, Le TP, Litaudon M, Tran DT, Chau VM, Mai HDT, and Pham VC
- Subjects
- Antineoplastic Agents, Phytogenic chemistry, Antineoplastic Agents, Phytogenic pharmacology, Carbon-13 Magnetic Resonance Spectroscopy, Cell Death drug effects, Cell Line, Tumor, Flavonoids chemistry, Flavonoids pharmacology, Humans, Plant Extracts chemistry, Proton Magnetic Resonance Spectroscopy, Spectroscopy, Fourier Transform Infrared, Euphorbiaceae chemistry, Fruit chemistry, Phenols isolation & purification, Phenols pharmacology
- Abstract
A new modified geranylated flavonoid, 3'-dehydroxy-solophenol C ( 1 ), along with 17 known compounds ( 2 - 18 ) were isolated from the fruits of Macaranga denticulata . Their structures were established by spectral analysis, such as mass spectrometry, 1D-NMR and 2D-NMR. The new geranylated flavonoid 1 showed a moderate cytotoxic activity against the A549 cell line with IC
50 value of 16.0 µM. Compound 9 showed the highest cytotoxic activities against KB, HepG2, Lu-1 and MCF7 cell lines with IC50 values of 0.6, 0.8, 1.3 and 1.2 µM, respectively.- Published
- 2021
- Full Text
- View/download PDF
29. Machine-Learning and Chemicogenomics Approach Defines and Predicts Cross-Talk of Hippo and MAPK Pathways.
- Author
-
Pham TH, Hagenbeek TJ, Lee HJ, Li J, Rose CM, Lin E, Yu M, Martin SE, Piskol R, Lacap JA, Sampath D, Pham VC, Modrusan Z, Lill JR, Klijn C, Malek S, Chang MT, and Dey A
- Subjects
- Humans, Cheminformatics methods, Computational Biology methods, Genomics methods, Hippo Signaling Pathway, MAP Kinase Signaling System, Machine Learning, Signal Transduction
- Abstract
Hippo pathway dysregulation occurs in multiple cancers through genetic and nongenetic alterations, resulting in translocation of YAP to the nucleus and activation of the TEAD family of transcription factors. Unlike other oncogenic pathways such as RAS, defining tumors that are Hippo pathway-dependent is far more complex due to the lack of hotspot genetic alterations. Here, we developed a machine-learning framework to identify a robust, cancer type-agnostic gene expression signature to quantitate Hippo pathway activity and cross-talk as well as predict YAP/TEAD dependency across cancers. Further, through chemical genetic interaction screens and multiomics analyses, we discover a direct interaction between MAPK signaling and TEAD stability such that knockdown of YAP combined with MEK inhibition results in robust inhibition of tumor cell growth in Hippo dysregulated tumors. This multifaceted approach underscores how computational models combined with experimental studies can inform precision medicine approaches including predictive diagnostics and combination strategies. SIGNIFICANCE: An integrated chemicogenomics strategy was developed to identify a lineage-independent signature for the Hippo pathway in cancers. Evaluating transcriptional profiles using a machine-learning method led to identification of a relationship between YAP/TAZ dependency and MAPK pathway activity. The results help to nominate potential combination therapies with Hippo pathway inhibition. This article is highlighted in the In This Issue feature, p. 521 ., (©2020 American Association for Cancer Research.)
- Published
- 2021
- Full Text
- View/download PDF
30. Integration of innate immune signalling by caspase-8 cleavage of N4BP1.
- Author
-
Gitlin AD, Heger K, Schubert AF, Reja R, Yan D, Pham VC, Suto E, Zhang J, Kwon YC, Freund EC, Kang J, Pham A, Caothien R, Bacarro N, Hinkle T, Xu M, McKenzie BS, Haley B, Lee WP, Lill JR, Roose-Girma M, Dohse M, Webster JD, Newton K, and Dixit VM
- Subjects
- Adaptor Proteins, Vesicular Transport metabolism, Animals, Cells, Cultured, Cytokines antagonists & inhibitors, Humans, Inflammation immunology, Mice, Mice, Inbred C57BL, Toll-Like Receptor 3 metabolism, Toll-Like Receptor 4 metabolism, Tumor Necrosis Factor-alpha immunology, Tumor Necrosis Factor-alpha metabolism, Caspase 8 metabolism, Cytokines immunology, Immunity, Innate immunology, Nuclear Proteins metabolism, RNA-Binding Proteins metabolism
- Abstract
Mutations in the death receptor FAS
1,2 or its ligand FASL3 cause autoimmune lymphoproliferative syndrome, whereas mutations in caspase-8 or its adaptor FADD-which mediate cell death downstream of FAS and FASL-cause severe immunodeficiency in addition to autoimmune lymphoproliferative syndrome4-6 . Mouse models have corroborated a role for FADD-caspase-8 in promoting inflammatory responses7-12 , but the mechanisms that underlie immunodeficiency remain undefined. Here we identify NEDD4-binding protein 1 (N4BP1) as a suppressor of cytokine production that is cleaved and inactivated by caspase-8. N4BP1 deletion in mice increased the production of select cytokines upon stimulation of the Toll-like receptor (TLR)1-TLR2 heterodimer (referred to herein as TLR1/2), TLR7 or TLR9, but not upon engagement of TLR3 or TLR4. N4BP1 did not suppress TLR3 or TLR4 responses in wild-type macrophages, owing to TRIF- and caspase-8-dependent cleavage of N4BP1. Notably, the impaired production of cytokines in response to TLR3 and TLR4 stimulation of caspase-8-deficient macrophages13 was largely rescued by co-deletion of N4BP1. Thus, the persistence of intact N4BP1 in caspase-8-deficient macrophages impairs their ability to mount robust cytokine responses. Tumour necrosis factor (TNF), like TLR3 or TLR4 agonists, also induced caspase-8-dependent cleavage of N4BP1, thereby licensing TRIF-independent TLRs to produce higher levels of inflammatory cytokines. Collectively, our results identify N4BP1 as a potent suppressor of cytokine responses; reveal N4BP1 cleavage by caspase-8 as a point of signal integration during inflammation; and offer an explanation for immunodeficiency caused by mutations of FADD and caspase-8.- Published
- 2020
- Full Text
- View/download PDF
31. New flavonoid and stilbene derivatives from the fruits of Macaranga balansae .
- Author
-
Mai HDT, Toan TP, Huu GT, Le TN, Oanh VTK, Hang NTM, Thu HT, Chau VM, Litaudon M, and Pham VC
- Subjects
- A549 Cells, Antineoplastic Agents, Phytogenic chemistry, Cell Line, Tumor, Drug Screening Assays, Antitumor, Flavonoids pharmacology, Fruit chemistry, Humans, Inhibitory Concentration 50, Magnetic Resonance Spectroscopy, Molecular Structure, Prenylation, Spectrometry, Mass, Electrospray Ionization, Stilbenes pharmacology, Antineoplastic Agents, Phytogenic pharmacology, Euphorbiaceae chemistry, Flavonoids chemistry, Stilbenes chemistry
- Abstract
Two new prenylated flavonoids, 4´-methyl-8-prenyltaxifolin ( 1 ) and 6,8-diprenyl-4´-methyl-naringenin ( 2 ) and a new geranylated stilbene, 4'-deprenyl-4-methoxymappain ( 3 ) together with eight known flavonoids ( 4-11 ) were isolated from the fruits of Macaranga balansae Gagnep. Their chemical structures were determined by means of spectroscopic methods including 1D, 2D NMR, and MS data. Compound 2 showed the highest cytotoxic activity against PanC1, A549, KB and LU-1 cell lines with IC
50 values range from 7.89 to 22.81 µM.- Published
- 2020
- Full Text
- View/download PDF
32. Development of a therapeutic anti-HtrA1 antibody and the identification of DKK3 as a pharmacodynamic biomarker in geographic atrophy.
- Author
-
Tom I, Pham VC, Katschke KJ Jr, Li W, Liang WC, Gutierrez J, Ah Young A, Figueroa I, Eshghi ST, Lee CV, Kanodia J, Snipas SJ, Salvesen GS, Lai P, Honigberg L, van Lookeren Campagne M, Kirchhofer D, Baruch A, and Lill JR
- Subjects
- Adaptor Proteins, Signal Transducing isolation & purification, Aged, Animals, Antibodies, Anti-Idiotypic genetics, Antibodies, Anti-Idiotypic immunology, Biomarkers blood, Disease Progression, Female, Genetic Predisposition to Disease, Genotype, Geographic Atrophy blood, Geographic Atrophy genetics, Geographic Atrophy immunology, High-Temperature Requirement A Serine Peptidase 1 antagonists & inhibitors, Humans, Immunoglobulin Fab Fragments immunology, Immunoglobulin Fab Fragments pharmacology, Macular Degeneration blood, Macular Degeneration genetics, Macular Degeneration immunology, Male, Polymorphism, Single Nucleotide genetics, Proteome genetics, Proteome immunology, Rats, Retina drug effects, Retina immunology, Retina pathology, Small Molecule Libraries pharmacology, Adaptor Proteins, Signal Transducing genetics, Antibodies, Anti-Idiotypic pharmacology, Geographic Atrophy drug therapy, High-Temperature Requirement A Serine Peptidase 1 genetics, Macular Degeneration drug therapy
- Abstract
Genetic polymorphisms in the region of the trimeric serine hydrolase high-temperature requirement 1 ( HTRA1 ) are associated with increased risk of age-related macular degeneration (AMD) and disease progression, but the precise biological function of HtrA1 in the eye and its contribution to disease etiologies remain undefined. In this study, we have developed an HtrA1-blocking Fab fragment to test the therapeutic hypothesis that HtrA1 protease activity is involved in the progression of AMD. Next, we generated an activity-based small-molecule probe (ABP) to track target engagement in vivo. In addition, we used N-terminomic proteomic profiling in preclinical models to elucidate the in vivo repertoire of HtrA1-specific substrates, and identified substrates that can serve as robust pharmacodynamic biomarkers of HtrA1 activity. One of these HtrA1 substrates, Dickkopf-related protein 3 (DKK3), was successfully used as a biomarker to demonstrate the inhibition of HtrA1 activity in patients with AMD who were treated with the HtrA1-blocking Fab fragment. This pharmacodynamic biomarker provides important information on HtrA1 activity and pharmacological inhibition within the ocular compartment., Competing Interests: Competing interest statement: I.T., V.C.P., K.J.K., W.L., W.-C.L., J.G., A.A.Y., I.F., S.T.E., C.V.L., J.K., P.L., D.K., L.H., M.v.L.C., D.K., A.B., and J.R.L. were employees of Genentech, Inc. during performance of this work., (Copyright © 2020 the Author(s). Published by PNAS.)
- Published
- 2020
- Full Text
- View/download PDF
33. Molecular and cellular dissection of the oxysterol-binding protein cycle through a fluorescent inhibitor.
- Author
-
Péresse T, Kovacs D, Subra M, Bigay J, Tsai MC, Polidori J, Gautier R, Desrat S, Fleuriot L, Debayle D, Litaudon M, Pham VC, Bignon J, Antonny B, Roussi F, and Mesmin B
- Subjects
- Carrier Proteins chemistry, Carrier Proteins genetics, Endoplasmic Reticulum chemistry, Endoplasmic Reticulum genetics, Fluorescence, Humans, Lipids chemistry, Protein Binding genetics, Protein Transport genetics, Receptors, Steroid chemistry, Stilbenes chemistry, trans-Golgi Network chemistry, trans-Golgi Network genetics, Biological Transport drug effects, Lipids genetics, Receptors, Steroid metabolism, Stilbenes metabolism
- Abstract
ORPphilins are bioactive natural products that strongly and selectively inhibit the growth of some cancer cell lines and are proposed to target intracellular lipid-transfer proteins of the oxysterol-binding protein (OSBP) family. These conserved proteins exchange key lipids, such as cholesterol and phosphatidylinositol 4-phosphate (PI(4)P), between organelle membranes. Among ORPphilins, molecules of the schweinfurthin family interfere with intracellular lipid distribution and metabolism, but their functioning at the molecular level is poorly understood. We report here that cell line sensitivity to schweinfurthin G (SWG) is inversely proportional to cellular OSBP levels. By taking advantage of the intrinsic fluorescence of SWG, we followed its fate in cell cultures and show that its incorporation at the trans -Golgi network depends on cellular abundance of OSBP. Using in vitro membrane reconstitution systems and cellular imaging approaches, we also report that SWG inhibits specifically the lipid transfer activity of OSBP. As a consequence, post-Golgi trafficking, membrane cholesterol levels, and PI(4)P turnover were affected. Finally, using intermolecular FRET analysis, we demonstrate that SWG directly binds to the lipid-binding cavity of OSBP. Collectively these results describe SWG as a specific and intrinsically fluorescent pharmacological tool for dissecting OSBP properties at the cellular and molecular levels. Our findings indicate that SWG binds OSBP with nanomolar affinity, that this binding is sensitive to the membrane environment, and that SWG inhibits the OSBP-catalyzed lipid exchange cycle., (© 2020 Péresse et al.)
- Published
- 2020
- Full Text
- View/download PDF
34. Antimicrobial lavandulylated flavonoids from a sponge-derived actinomycete.
- Author
-
Cao DD, Do TQ, Doan Thi Mai H, Vu Thi Q, Nguyen MA, Le Thi HM, Tran DT, Chau VM, Cong Thung D, and Pham VC
- Subjects
- Actinomycetales chemistry, Animals, Anti-Infective Agents chemistry, Anti-Infective Agents pharmacology, Bacillus cereus drug effects, Candida albicans drug effects, Enterococcus faecalis drug effects, Escherichia coli drug effects, Flavonoids chemistry, Flavonoids pharmacology, Microbial Sensitivity Tests, Pseudomonas aeruginosa drug effects, Staphylococcus aureus drug effects, Anti-Infective Agents isolation & purification, Flavonoids isolation & purification, Porifera microbiology, Streptomyces chemistry
- Abstract
Analysis of an antimicrobial culture broth extract of the sponge-derived actinomycete Streptomyces sp. (strain G246) led to the isolation of two new lavandulylated flavonoids, 6-lavandulyl-7-methoxy-5,2',4'-trihydroxylflavanone ( 1 ) and 5'-lavandulyl-4'-methoxy-2,4,2',6'-tetrahydroxylchalcone ( 2 ), along with eight known compounds 3 - 10 . Their structures were established by spectral data analysis, including MS, 1D, 2D-NMR and CD. The absolute configurations of 1 and 2 were suggested by comparison of their experimental and calculated electronic circular dichroism spectra. All the isolated compounds were evaluated for their antimicrobial activity against a panel of clinically significant microorganisms. Compounds 1 and 2 had a broad-spectrum of antimicrobial activity. Additionally, except the strain Escherichia coli , compound 2 exhibited remarkable inhibitory activity against Pseudomonas aeruginosa , Salmonella enterica , Enterococcus faecalis , Staphylococcus aureus , Bacillus cereus , and Candida albicans strains.
- Published
- 2020
- Full Text
- View/download PDF
35. Cytotoxic lignans from fruits of Cleistanthus tonkinensis.
- Author
-
Nguyen LH, Vu VN, Phi Thi D, Tran VH, Litaudon M, Roussi F, Nguyen VH, Chau VM, Doan Thi Mai H, and Pham VC
- Subjects
- Antineoplastic Agents, Phytogenic isolation & purification, Cell Line, Tumor, Humans, Lignans isolation & purification, Molecular Structure, Phytochemicals isolation & purification, Phytochemicals pharmacology, Vietnam, Antineoplastic Agents, Phytogenic pharmacology, Euphorbiaceae chemistry, Fruit chemistry, Lignans pharmacology
- Abstract
Seven new lignans, cleistonkinins A- E (1-5), cleistonkisides A and B (6-7) were isolated from the fruits of Cleistanthus tonkinensis (Euphorbiaceae), together with five known aryltetralin lignans, cleisindoside B (8), cleistantoxin (9), cleisindoside D (10), neocleistantoxin (11) and polygamain (12). Their structures were established from spectral analysis, including mass spectrometry and 2D-NMR. The absolute configurations of 4-7 were determined by analysis of their experimental CD spectra and comparison with calculated electronic circular dichroism (ECD) spectra. Compounds 2 and 6 had selective inhibition with moderate cytotoxicity against Pan C1 and A549 cell lines, respectively. Cleistantoxin (9) was significantly active against A549, HeLa, Hep3B, Pan C1 and MCF7 cell lines while it was less cytotoxic against HeLa cells. Neocleistantoxin (11) exhibited remarkable inhibition toward A549, HeLa, MCF7 and Pan C1. This is the first report for cytotoxicity of 9 and 11 against A549, Hep3B and Pan C1 cell lines., (Copyright © 2019 Elsevier B.V. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
36. Antimicrobial metabolites from a marine-derived Actinomycete Streptomyces sp. G278.
- Author
-
Cao DT, Tran VH, Vu VN, Mai HDT, Le THM, Vu TQ, Nguyen HH, Chau VM, and Pham VC
- Subjects
- Actinobacteria metabolism, Anti-Bacterial Agents chemistry, Anti-Bacterial Agents isolation & purification, Anti-Bacterial Agents pharmacology, Anti-Infective Agents chemistry, Anti-Infective Agents pharmacology, Antifungal Agents pharmacology, Candida albicans drug effects, Enterococcus faecalis drug effects, Escherichia coli drug effects, Molecular Structure, Spectrum Analysis, Staphylococcus aureus drug effects, Anti-Infective Agents isolation & purification, Streptomyces chemistry
- Abstract
Analysis of an antimicrobial extract prepared from culture broth of the marine-derived actinomycete Streptomyces sp. G278 led to the isolation of ten compounds, 1 - 10 . Two compounds, 2,5-Bis(5- tert -butyl-2-benzoxazolyl)thiophene ( 1 ), and 3-hydroxyl-2-methylpyridine ( 2 ) were isolated from a natural source for the first time. The structures of the isolated compounds were established by their spectral data analysis, including mass spectrometry, 1D-NMR, 2D-NMR, and X-ray crystallographic analysis in case of compound 3 . All isolated compounds were evaluated for their antimicrobial activity against a panel of clinically significant microorganisms. Compounds 1 and 3 selectively inhibited Enterococcus faecalis (MIC: 256 μg/mL). Compound 2 was found to have antibacterial and antifungal activity against Escherichia coli (MIC: 64 μg/mL), Salmonella enterica (MIC: 256 μg/mL), Staphylococcus aureus (MIC: 256 μg/mL), Enterococcus faecalis (MIC: 256 μg/mL), and Candida albicans (MIC: 64 μg/mL). Except for compounds 9 and 10 , the other known metabolites ( 4 - 8 ) also exhibited antimicrobial activity.
- Published
- 2019
- Full Text
- View/download PDF
37. Chemical Composition and Biological Activities of Metabolites from the Marine Fungi Penicillium sp. Isolated from Sediments of Co To Island, Vietnam.
- Author
-
Le HMT, Do QT, Doan MHT, Vu QT, Nguyen MA, Vu THT, Nguyen HD, Duong NTT, Tran MH, Chau VM, and Pham VC
- Subjects
- Molecular Structure, Vietnam, Anti-Bacterial Agents chemistry, Anti-Bacterial Agents metabolism, Anti-Bacterial Agents pharmacology, Aquatic Organisms chemistry, Aquatic Organisms metabolism, Enterococcus faecalis growth & development, Penicillium chemistry, Penicillium metabolism
- Abstract
Marine microorganisms are an invaluable source of novel active secondary metabolites possessing various biological activities. In this study, the extraction and isolation of the marine sediment Penicillium species collected in Vietnam yielded ten secondary metabolites, including sporogen AO-1 ( 1 ), 3-indolecarbaldehyde ( 2 ), 2-[(5-methyl-1,4-dioxan-2-yl)methoxy]ethanol ( 3 ), 2-[(2 R -hydroxypropanoyl)amino]benzamide ( 4 ), 4-hydroxybenzandehyde ( 5 ), chrysogine ( 6 ), 3-acetyl-4-hydroxycinnoline ( 7 ), acid 1H-indole-3-acetic ( 8 ), cyclo (Tyr-Trp) ( 9 ), and 2',3'-dihydrosorbicillin ( 10 ). Their structures were identified by the analysis of 1D and 2D NMR data. Among the isolated compounds, 2-[(5-methyl-1,4-dioxan-2-yl)methoxy]ethanol ( 3 ) showed a strong inhibitory effect against Enterococcus faecalis with a minimum inhibitory concentration value of 32 µg/mL. Both 2-[(2 R -hydroxypropanoyl)amino]benzamide ( 4 ) and 4-hydroxybenzandehyde ( 5 ) selectively inhibited E. coli with minimum inhibitory concentration values of 16 and 8 µg/mL, respectively. 2',3'-Dihydrosorbicillin ( 10 ) potentially inhibited α-glucosidase activity at a concentration of 2.0 mM (66.31%).
- Published
- 2019
- Full Text
- View/download PDF
38. Correction: MCC950/CRID3 potently targets the NACHT domain of wild-type NLRP3 but not disease-associated mutants for inflammasome inhibition.
- Author
-
Walle LV, Stowe IB, Šácha P, Lee BL, Demon D, Fossoul A, Van Hauwermeiren F, Saavedra PHV, Šimon P, Šubr V, Kostka L, Stivala CE, Pham VC, Staben ST, Yamazoe S, Konvalinka J, Kayagaki N, and Lamkanfi M
- Abstract
[This corrects the article DOI: 10.1371/journal.pbio.3000354.].
- Published
- 2019
- Full Text
- View/download PDF
39. Cytotoxic Phenolic Compounds from Fruit Glandular Trichomes of Macaranga tanarius .
- Author
-
Doan TMH, Nguyen TL, Trinh TTV, Vu VN, Phi TD, Litaudon M, Roussi F, Chau VM, and Pham VC
- Abstract
A new flavonoid, macatanarin D ( 1 ), together with five known stilbenes ( 2-6 ), was isolated from fruit glandular trichomes of Macaranga tanarius . Their structures were elucidated on the basis of spectroscopic methods and through comparison with data reported in the literature. All isolated compounds were evaluated for their cytotoxic activities against KB and MCF-7 cell lines. Compounds 3 , 4 , and 5 showed the strongest activities against both cell lines with IC
50 values in the range of 0.03-0.12 μ M, and compound 2 only showed a significant cytotoxicity against KB cell line (IC50 = 0.26 μ M) and a moderate cytotoxicity against MCF-7 (IC50 = 10.4 μ M). Compounds 1 and 6 showed weak cytotoxic activities against KB cell line with IC50 values of 29.3 and 24.7 μ M, respectively., Competing Interests: The authors declare that there are no conflicts of interest regarding the publication of this paper., (Copyright © 2019 Thi Mai Huong Doan et al.)- Published
- 2019
- Full Text
- View/download PDF
40. The RIPK4-IRF6 signalling axis safeguards epidermal differentiation and barrier function.
- Author
-
Oberbeck N, Pham VC, Webster JD, Reja R, Huang CS, Zhang Y, Roose-Girma M, Warming S, Li Q, Birnberg A, Wong W, Sandoval W, Kőműves LG, Yu K, Dugger DL, Maltzman A, Newton K, and Dixit VM
- Subjects
- Abnormalities, Multiple genetics, Animals, Cleft Lip genetics, Cleft Palate genetics, Cysts genetics, Embryo, Mammalian cytology, Embryo, Mammalian embryology, Embryo, Mammalian metabolism, Epidermal Cells metabolism, Epidermis embryology, Eye Abnormalities genetics, Female, Fingers abnormalities, Gene Expression Regulation, Interferon Regulatory Factors deficiency, Interferon Regulatory Factors genetics, Knee abnormalities, Knee Joint abnormalities, Lip abnormalities, Lipid Metabolism genetics, Lower Extremity Deformities, Congenital genetics, Male, Mice, Mice, Inbred C57BL, Phosphorylation, Phosphoserine metabolism, Protein Serine-Threonine Kinases genetics, Syndactyly genetics, Urogenital Abnormalities genetics, Cell Differentiation, Epidermal Cells cytology, Epidermis physiology, Interferon Regulatory Factors metabolism, Protein Serine-Threonine Kinases metabolism, Signal Transduction
- Abstract
The integrity of the mammalian epidermis depends on a balance of proliferation and differentiation in the resident population of stem cells
1 . The kinase RIPK4 and the transcription factor IRF6 are mutated in severe developmental syndromes in humans, and mice lacking these genes display epidermal hyperproliferation and soft-tissue fusions that result in neonatal lethality2-5 . Our understanding of how these genes control epidermal differentiation is incomplete. Here we show that the role of RIPK4 in mouse development requires its kinase activity; that RIPK4 and IRF6 expressed in the epidermis regulate the same biological processes; and that the phosphorylation of IRF6 at Ser413 and Ser424 primes IRF6 for activation. Using RNA sequencing (RNA-seq), histone chromatin immunoprecipitation followed by sequencing (ChIP-seq) and assay for transposase-accessible chromatin using sequencing (ATAC-seq) of skin in wild-type and IRF6-deficient mouse embryos, we define the transcriptional programs that are regulated by IRF6 during epidermal differentiation. IRF6 was enriched at bivalent promoters, and IRF6 deficiency caused defective expression of genes that are involved in the metabolism of lipids and the formation of tight junctions. Accordingly, the lipid composition of the stratum corneum of Irf6-/- skin was abnormal, culminating in a severe defect in the function of the epidermal barrier. Collectively, our results explain how RIPK4 and IRF6 function to ensure the integrity of the epidermis and provide mechanistic insights into why developmental syndromes that are characterized by orofacial, skin and genital abnormalities result when this axis goes awry.- Published
- 2019
- Full Text
- View/download PDF
41. MCC950/CRID3 potently targets the NACHT domain of wild-type NLRP3 but not disease-associated mutants for inflammasome inhibition.
- Author
-
Vande Walle L, Stowe IB, Šácha P, Lee BL, Demon D, Fossoul A, Van Hauwermeiren F, Saavedra PHV, Šimon P, Šubrt V, Kostka L, Stivala CE, Pham VC, Staben ST, Yamazoe S, Konvalinka J, Kayagaki N, and Lamkanfi M
- Subjects
- Animals, Cytokines antagonists & inhibitors, Disease Models, Animal, Drug Evaluation, Preclinical, HEK293 Cells, Heterocyclic Compounds, 4 or More Rings, Humans, Indenes, Lipopolysaccharides, Macrophages drug effects, Mice, Mice, Inbred C57BL, NLR Family, Pyrin Domain-Containing 3 Protein genetics, Protein Domains, Sulfones, Cryopyrin-Associated Periodic Syndromes genetics, Furans pharmacology, Inflammasomes antagonists & inhibitors, NLR Family, Pyrin Domain-Containing 3 Protein antagonists & inhibitors, Sulfonamides pharmacology
- Abstract
The nucleotide-binding-domain (NBD)-and leucine-rich repeat (LRR)-containing (NLR) family, pyrin-domain-containing 3 (NLRP3) inflammasome drives pathological inflammation in a suite of autoimmune, metabolic, malignant, and neurodegenerative diseases. Additionally, NLRP3 gain-of-function point mutations cause systemic periodic fever syndromes that are collectively known as cryopyrin-associated periodic syndrome (CAPS). There is significant interest in the discovery and development of diarylsulfonylurea Cytokine Release Inhibitory Drugs (CRIDs) such as MCC950/CRID3, a potent and selective inhibitor of the NLRP3 inflammasome pathway, for the treatment of CAPS and other diseases. However, drug discovery efforts have been constrained by the lack of insight into the molecular target and mechanism by which these CRIDs inhibit the NLRP3 inflammasome pathway. Here, we show that the NAIP, CIITA, HET-E, and TP1 (NACHT) domain of NLRP3 is the molecular target of diarylsulfonylurea inhibitors. Interestingly, we find photoaffinity labeling (PAL) of the NACHT domain requires an intact (d)ATP-binding pocket and is substantially reduced for most CAPS-associated NLRP3 mutants. In concordance with this finding, MCC950/CRID3 failed to inhibit NLRP3-driven inflammatory pathology in two mouse models of CAPS. Moreover, it abolished circulating levels of interleukin (IL)-1β and IL-18 in lipopolysaccharide (LPS)-challenged wild-type mice but not in Nlrp3L351P knock-in mice and ex vivo-stimulated mutant macrophages. These results identify wild-type NLRP3 as the molecular target of MCC950/CRID3 and show that CAPS-related NLRP3 mutants escape efficient MCC950/CRID3 inhibition. Collectively, this work suggests that MCC950/CRID3-based therapies may effectively treat inflammation driven by wild-type NLRP3 but not CAPS-associated mutants., Competing Interests: LVW, FVH, and ML are employees of Janssen Pharmaceutica. IBS, BLL, CES, VCP, STS, SY, and NK are employees of Genentech. The authors declare no competing financial interests.
- Published
- 2019
- Full Text
- View/download PDF
42. Antimicrobial Lavandulylated Flavonoids from a Sponge-Derived Streptomyces sp. G248 in East Vietnam Sea.
- Author
-
Cao DD, Trinh TTV, Mai HDT, Vu VN, Le HM, Thi QV, Nguyen MA, Duong TT, Tran DT, Chau VM, Ma R, Shetye G, Cho S, Murphy BT, and Pham VC
- Subjects
- Animals, Antibiotics, Antitubercular chemistry, Antibiotics, Antitubercular isolation & purification, Cell Line, Tumor, Circular Dichroism, Flavonoids chemistry, Flavonoids isolation & purification, Magnetic Resonance Spectroscopy, Microbial Sensitivity Tests, Molecular Structure, Mycobacterium tuberculosis drug effects, Spectrometry, Mass, Electrospray Ionization, Vietnam, Antibiotics, Antitubercular pharmacology, Flavonoids pharmacology, Porifera microbiology, Streptomyces chemistry
- Abstract
Three new lavandulylated flavonoids, (2 S ,2'' S )-6-lavandulyl-7,4'-dimethoxy-5,2'-dihydroxylflavanone ( 1 ), (2 S ,2'' S )-6-lavandulyl-5,7,2',4'-tetrahydroxylflavanone ( 2 ), and (2'' S )-5'-lavandulyl-2'-methoxy-2,4,4',6'-tetrahydroxylchalcone ( 3 ), along with seven known compounds 4 - 10 were isolated from culture broth of Streptomyce s sp. G248. Their structures were established by spectroscopic data analysis, including 1D and 2D nuclear magnetic resonance (NMR), and high-resolution electrospray ionization mass spectrometry (HR-ESI-MS). The absolute configurations of 1 - 3 were resolved by comparison of their experimental and calculated electronic circular dichroism spectra. Compounds 1 - 3 exhibited remarkable antimicrobial activity. Whereas, two known compounds 4 and 5 exhibited inhibitory activity against Mycobacterium tuberculosis H37Rv with minimum inhibitory concentration (MIC) values of 6.0 µg/mL and 11.1 µg/mL, respectively., Competing Interests: The authors declare no conflicts of interest
- Published
- 2019
- Full Text
- View/download PDF
43. New dianthramide and cinnamic ester glucosides from the roots of Aconitum carmichaelii.
- Author
-
Do TQ, Truong BN, Mai HDT, Nguyen TL, Nguyen VH, Nguyen HD, Nguyen TD, Nguyen TC, Luong TV, Giang LT, Chau VM, and Pham VC
- Subjects
- Animals, Cinnamates pharmacology, Drugs, Chinese Herbal, Glucosides chemistry, Glucosides pharmacology, Magnetic Resonance Spectroscopy, Mice, Molecular Structure, Nitric Oxide antagonists & inhibitors, Nitric Oxide biosynthesis, RAW 264.7 Cells, Spectrometry, Mass, Electrospray Ionization, ortho-Aminobenzoates pharmacology, Aconitum chemistry, Cinnamates chemistry, Plant Roots chemistry, ortho-Aminobenzoates chemistry
- Abstract
Four new compounds N-salicyl-3-hydroxyanthranilic acid methyl ester (1), N-(2'-dehydroxysalicyl)-3-hydroxyanthranilic acid methyl ester (2), methyl-4-β-D-allopyranosyl-ferulate (3), and methyl-4-β-D-gulopyranosyl-cinnamate (4), along with six known compounds (5-10), were isolated from the roots of Aconitum carmichelii Debx. Their structures were elucidated on the basis of spectral data analysis, including 1D, 2D-NMR, and HR-ESI-MS. Compounds 1 and 2 showed the inhibition of nitric oxide (NO) production with IC
50 values of 9.13 and 19.94 μM, respectively.- Published
- 2019
- Full Text
- View/download PDF
44. Cytotoxic Alkaloids from Leaves of Pilea aff. martinii.
- Author
-
Doan Thi Thuy A, Trinh Thi Thanh V, Doan Thi Mai H, Le HT, Litaudon M, Nguyen VH, Chau VM, and Pham VC
- Subjects
- Cell Line, Tumor drug effects, Circular Dichroism, Hep G2 Cells drug effects, Humans, MCF-7 Cells drug effects, Magnetic Resonance Spectroscopy, Mass Spectrometry, Alkaloids isolation & purification, Cytotoxins isolation & purification, Plant Leaves chemistry, Urticaceae chemistry
- Abstract
Two new phenanthroquinolizidine alkaloids (1: and 2: ) and a new piperidine derivative (3: ) were isolated from the leaves of Pilea aff. martinii together with 3 known alkaloids: julandine (4: ), cryptopleurine (5: ), and 1,3,6,6-tetramethyl-5,6,7,8-tetrahydro-isoquinolin-8-one (6: ). Their structures were determined by spectral data analyses including mass spectrometry and 2-dimensional nuclear magnetic resonance data. The absolute configurations of 1: -3: were established by comparison of their experimental circular dichroism data with the calculated electronic circular dichroism spectra. The isolated compounds were evaluated for their cytotoxicity against 4 cancer cell lines: KB (mouth epidermal carcinoma cells), HepG-2 (human liver hepatocellular carcinoma cells), LU-1 (human lung adenocarcinoma cells), and MCF-7 (human breast cancer cells). The new phenanthroquinolizidine pileamartine D (2: ) showed strong and selective proliferation inhibition toward KB and HepG-2 cells with IC
50 values of 25 and 27 nM, respectively. Pileamartine C (1: ), julandine (4: ), and cryptopleurine (5: ) exhibited cytotoxicity against 4 tested cancer cell lines with IC50 values less than 1 µM., Competing Interests: The authors declare no competing financial interests., (Georg Thieme Verlag KG Stuttgart · New York.)- Published
- 2019
- Full Text
- View/download PDF
45. New 9α-Hydroxy-5α,6α-epoxyhydroxysterols from the Vietnamese Marine Sponge Ircinia echinata .
- Author
-
Trinh TTV, Truong BN, Longeon A, Doan TMH, Deville A, Chau VM, Pham VC, and Bourguet-Kondracki ML
- Subjects
- Animals, Antineoplastic Agents chemistry, Antineoplastic Agents isolation & purification, Drug Screening Assays, Antitumor, Epoxy Compounds chemistry, Epoxy Compounds isolation & purification, Hep G2 Cells, Humans, MCF-7 Cells, Magnetic Resonance Spectroscopy methods, Mass Spectrometry methods, Molecular Structure, Sterols chemistry, Sterols isolation & purification, Vietnam, Antineoplastic Agents pharmacology, Aquatic Organisms chemistry, Epoxy Compounds pharmacology, Porifera chemistry, Sterols pharmacology
- Abstract
Chemical investigation of the methanol extract of the Vietnamese marine sponge Ircinia echinata led to the isolation of six new 9α-hydroxy-5α,6α-epoxysterols: 5α,6α-epoxycholesta-7,22( E )-dien-3β,9α-diol ( 1 ), 5α,6α-epoxycholesta-7,24(28)-dien-3β,9α-diol ( 2 ), (24 R )-5α,6α-epoxy-24-ethyl-cholesta-7-en-3β,9α-diol ( 3 ), 5α,6α-epoxycholesta-7-en-3β,9α-diol ( 4 ), (24 S )-5α,6α-epoxyergosta-7,22-dien-3β,9α-diol ( 5 ), and (24 R )-5α,6α-epoxy-24-methyl-cholesta-7-en-3β,9α-diol ( 6 ) along with the known 5α-6α-epoxysterols: 5α,6α-epoxystigmasta-7-en-3β-ol ( 7 ), 5α,6α-epoxystigmasta-7,22-dien-3β-ol ( 8 ), and 5α,6α-epoxyergosta-7-en-3β-ol ( 9 ). Their structures and their configurations were established on the basis of high resolution mass spectra and extensive 1D and 2D NMR spectroscopic data and by comparison with the literature. Their cytotoxic activity, evaluated against three human cancer cell lines, MCF-7, Hep-G2 and LU-1, revealed that only compounds 3 and 4 exhibited significant antiproliferative activity and compound 3 showed a selective inhibition towards the MCF-7 human breast cancer cells.
- Published
- 2018
- Full Text
- View/download PDF
46. Tumor suppressor BAP1 is essential for thymic development and proliferative responses of T lymphocytes.
- Author
-
Arenzana TL, Lianoglou S, Seki A, Eidenschenk C, Cheung T, Seshasayee D, Hagenbeek T, Sambandam A, Noubade R, Peng I, Lesch J, DeVoss J, Wu X, Lee WP, Caplazi P, Webster J, Liu J, Pham VC, Arnott D, Lill JR, Modrusan Z, Dey A, and Rutz S
- Subjects
- Animals, Atrophy, Cell Cycle genetics, Gene Expression Profiling, Histones genetics, Histones metabolism, Lysine genetics, Lysine metabolism, Mice, Knockout, Mice, Transgenic, Receptors, Antigen, T-Cell genetics, Receptors, Antigen, T-Cell metabolism, Thymus Gland pathology, Tumor Suppressor Proteins metabolism, Ubiquitin Thiolesterase metabolism, Ubiquitination, T-Lymphocytes metabolism, Thymocytes metabolism, Thymus Gland metabolism, Tumor Suppressor Proteins genetics, Ubiquitin Thiolesterase genetics
- Abstract
Loss of function of the nuclear deubiquitinating enzyme BRCA1-associated protein-1 (BAP1) is associated with a wide spectrum of cancers. We report that tamoxifen-induced BAP1 deletion in adult mice resulted in severe thymic atrophy. BAP1 was critical for T cell development at several stages. In the thymus, BAP1 was required for progression through the pre-T cell receptor checkpoint. Peripheral T cells lacking BAP1 demonstrated a defect in homeostatic and antigen-driven expansion. Deletion of BAP1 resulted in suppression of E2F target genes and defects in cell cycle progression, which was dependent on the catalytic activity of BAP1, but did not require its interaction with host cell factor-1 (HCF-1). Loss of BAP1 led to increased monoubiquitination of histone H2A at Lys
119 (H2AK119ub) throughout the T cell lineage, in particular in immature thymocytes, but did not alter trimethylation of histone H3 at Lys27 (H3K27me3). Deletion of BAP1 also abrogated B cell development in the bone marrow. Our findings uncover a nonredundant function for BAP1 in maintaining the lymphoid lineage., (Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.)- Published
- 2018
- Full Text
- View/download PDF
47. Two new linear acetogenins from the fruits of Goniothalamus gracilipes.
- Author
-
Trieu QH, Mai HDT, Litaudon M, Phi Thi D, Tran TA, Nguyen VH, Chau VM, and Pham VC
- Subjects
- Antineoplastic Agents, Phytogenic chemistry, Cell Line, Tumor, Circular Dichroism, Fruit chemistry, Humans, Inhibitory Concentration 50, Magnetic Resonance Spectroscopy, Molecular Structure, Spectrometry, Mass, Electrospray Ionization, Acetogenins chemistry, Antineoplastic Agents, Phytogenic pharmacology, Goniothalamus chemistry
- Abstract
Two new linear acetogenins, gracilipin A (1) and methylsaccopetrin A (2) along with seven known compounds, saccopetrin A (3), 7,3',4'-trimethylquercetin (4), rhamnazin (5), casticin (6), isokanugin (7), melisimplexin (8) and 5-hydroxy-3,7-dimethoxy-3',4'-methylenedioxyflavone (9) were isolated from the fruits of Goniothalamus gracilipes Bân. Their structures were established by spectral analysis, such as mass spectrometry, 1D-NMR, 2D-NMR and circular dichroism (CD). Compounds 1 and 3 showed cytotoxic activity against KB cell line with IC
50 values of 14.6 and 15.3 μM, respectively.- Published
- 2018
- Full Text
- View/download PDF
48. Cytotoxic Prenylated Stilbenes Isolated from Macaranga tanarius.
- Author
-
Péresse T, Jézéquel G, Allard PM, Pham VC, Huong DTM, Blanchard F, Bignon J, Lévaique H, Wolfender JL, Litaudon M, and Roussi F
- Subjects
- Antineoplastic Agents, Phytogenic chemistry, Drug Screening Assays, Antitumor, Flavonoids chemistry, Fruit chemistry, Humans, Molecular Structure, Nuclear Magnetic Resonance, Biomolecular, Plant Leaves chemistry, Prenylation, Stilbenes chemistry, Vietnam, Antineoplastic Agents, Phytogenic isolation & purification, Antineoplastic Agents, Phytogenic pharmacology, Euphorbiaceae chemistry, Stilbenes isolation & purification, Stilbenes pharmacology
- Abstract
With the aim of discovering new cytotoxic prenylated stilbenes of the schweinfurthin series, Macaranga tanarius was selected for detailed phytochemical investigation among 21 Macaranga species examined by using a molecular networking approach. From an ethanol extract of the fruits, seven new prenylated stilbenes, schweinfurthins K-Q (7-13), were isolated, along with vedelianin (1), schwenfurthins E-G (2-4), mappain (5), and methyl-mappain (6). The structures of the new compounds were established by spectroscopic data analysis. The relative configurations of compounds 8, 12, and 13 were determined based on ROESY NMR spectroscopic analysis. The cytotoxic activities of compounds 1-13 were evaluated against the human glioblastoma (U87) and lung (A549) cancer cell lines.
- Published
- 2017
- Full Text
- View/download PDF
49. Dual Beam Depth Profiling and Imaging with Argon and Bismuth Clusters of Prenylated Stilbenes on Glandular Trichomes of Macaranga vedeliana.
- Author
-
Péresse T, Elie N, Touboul D, Pham VC, Dumontet V, Roussi F, Litaudon M, and Brunelle A
- Subjects
- Fruit chemistry, Plant Leaves chemistry, Prenylation, Argon chemistry, Bismuth chemistry, Euphorbiaceae chemistry, Mass Spectrometry methods, Stilbenes chemistry
- Abstract
Using a time-of-flight secondary ion mass spectrometer equipped with an argon cluster ion for sputtering and a bismuth liquid metal ion source for analysis, both surfaces of leaves and fruits of Macaranga vedeliana, an endemic New Caledonian species, have been for the first time analyzed by a dual beam depth profiling. To prevent in-vacuum evaporation of the liquid content of the small glandular trichomes covering fruits and leaves surfaces and also to be able to analyze their liquid content while preventing any sublimation of the latter, the samples were kept frozen during the whole experiment using a nitrogen cooled sample holder. Thus, it was possible to demonstrate that vedelianin, an active metabolite of the family of prenylated stilbenes named schweinfurthins, is only located in these glandular trichomes.
- Published
- 2017
- Full Text
- View/download PDF
50. The kinase TPL2 activates ERK and p38 signaling to promote neutrophilic inflammation.
- Author
-
Senger K, Pham VC, Varfolomeev E, Hackney JA, Corzo CA, Collier J, Lau VWC, Huang Z, Hamidzhadeh K, Caplazi P, Peng I, Setiadi AF, Francis R, Paler-Martinez A, Kwon YC, Ramirez-Carrozzi V, Sun Y, Grigg PW, Roose-Girma M, Jeet S, Barck KH, Pham A, Ota N, Ha C, Stinson J, Guillory J, Tam L, Modrusan Z, Emson C, McKenzie BS, Townsend MJ, Carano RAD, Warming S, Vucic D, DeVoss J, Lee WP, Lill JR, and Zarrin AA
- Subjects
- Animals, Enzyme Activation, Inflammation enzymology, Inflammation genetics, MAP Kinase Kinase 3 genetics, MAP Kinase Kinase 3 metabolism, MAP Kinase Kinase 6 genetics, MAP Kinase Kinase 6 metabolism, MAP Kinase Kinase Kinases genetics, Mice, Mitogen-Activated Protein Kinase 3 genetics, Proto-Oncogene Proteins genetics, p38 Mitogen-Activated Protein Kinases genetics, MAP Kinase Kinase Kinases metabolism, MAP Kinase Signaling System, Mitogen-Activated Protein Kinase 3 metabolism, Neutrophil Activation, Neutrophils enzymology, Proto-Oncogene Proteins metabolism, p38 Mitogen-Activated Protein Kinases metabolism
- Abstract
Tumor progression locus 2 (TPL2; also known as MAP3K8) is a mitogen-activated protein kinase (MAPK) kinase kinase (MAP3K) that phosphorylates the MAPK kinases MEK1 and MEK2 (MEK1/2), which, in turn, activate the MAPKs extracellular signal-regulated kinase 1 (ERK1) and ERK2 (ERK1/2) in macrophages stimulated through the interleukin-1 receptor (IL-1R), Toll-like receptors (TLRs), or the tumor necrosis factor receptor (TNFR). We describe a conserved and critical role for TPL2 in mediating the effector functions of neutrophils through the activation of the p38 MAPK signaling pathway. Gene expression profiling and functional studies of neutrophils and monocytes revealed a MEK1/2-independent branch point downstream of TPL2 in neutrophils. Biochemical analyses identified the MAPK kinases MEK3 and MEK6 and the MAPKs p38α and p38δ as downstream effectors of TPL2 in these cells. Genetic ablation of the catalytic activity of TPL2 or therapeutic intervention with a TPL2-specific inhibitor reduced the production of inflammatory mediators by neutrophils in response to stimulation with the TLR4 agonist lipopolysaccharide (LPS) in vitro, as well as in rodent models of inflammatory disease. Together, these data suggest that TPL2 is a drug target that activates not only MEK1/2-dependent but also MEK3/6-dependent signaling to promote inflammatory responses., (Copyright © 2017, American Association for the Advancement of Science.)
- Published
- 2017
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.