64 results on '"Monica Marini"'
Search Results
2. Microfluidics for 3D Cell and Tissue Cultures: Microfabricative and Ethical Aspects Updates
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Tania Limongi, Francesco Guzzi, Elvira Parrotta, Patrizio Candeloro, Stefania Scalise, Valeria Lucchino, Francesco Gentile, Luca Tirinato, Maria Laura Coluccio, Bruno Torre, Marco Allione, Monica Marini, Francesca Susa, Enzo Di Fabrizio, Giovanni Cuda, and Gerardo Perozziello
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3D cell cultures ,microfluidics ,lab on chip ,in vitro cell cultures ,3Rs principles ,Cytology ,QH573-671 - Abstract
The necessity to improve in vitro cell screening assays is becoming ever more important. Pharmaceutical companies, research laboratories and hospitals require technologies that help to speed up conventional screening and therapeutic procedures to produce more data in a short time in a realistic and reliable manner. The design of new solutions for test biomaterials and active molecules is one of the urgent problems of preclinical screening and the limited correlation between in vitro and in vivo data remains one of the major issues. The establishment of the most suitable in vitro model provides reduction in times, costs and, last but not least, in the number of animal experiments as recommended by the 3Rs (replace, reduce, refine) ethical guiding principles for testing involving animals. Although two-dimensional (2D) traditional cell screening assays are generally cheap and practical to manage, they have strong limitations, as cells, within the transition from the three-dimensional (3D) in vivo to the 2D in vitro growth conditions, do not properly mimic the real morphologies and physiology of their native tissues. In the study of human pathologies, especially, animal experiments provide data closer to what happens in the target organ or apparatus, but they imply slow and costly procedures and they generally do not fully accomplish the 3Rs recommendations, i.e., the amount of laboratory animals and the stress that they undergo must be minimized. Microfluidic devices seem to offer different advantages in relation to the mentioned issues. This review aims to describe the critical issues connected with the conventional cells culture and screening procedures, showing what happens in the in vivo physiological micro and nano environment also from a physical point of view. During the discussion, some microfluidic tools and their components are described to explain how these devices can circumvent the actual limitations described in the introduction.
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- 2022
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3. Lipid-Based Nanovesicular Drug Delivery Systems
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Tania Limongi, Francesca Susa, Monica Marini, Marco Allione, Bruno Torre, Roberto Pisano, and Enzo di Fabrizio
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lipid vesicles ,niosomes ,proniosomes ,ethosomes ,transferosomes ,pharmacosomes ,Chemistry ,QD1-999 - Abstract
In designing a new drug, considering the preferred route of administration, various requirements must be fulfilled. Active molecules pharmacokinetics should be reliable with a valuable drug profile as well as well-tolerated. Over the past 20 years, nanotechnologies have provided alternative and complementary solutions to those of an exclusively pharmaceutical chemical nature since scientists and clinicians invested in the optimization of materials and methods capable of regulating effective drug delivery at the nanometer scale. Among the many drug delivery carriers, lipid nano vesicular ones successfully support clinical candidates approaching such problems as insolubility, biodegradation, and difficulty in overcoming the skin and biological barriers such as the blood–brain one. In this review, the authors discussed the structure, the biochemical composition, and the drug delivery applications of lipid nanovesicular carriers, namely, niosomes, proniosomes, ethosomes, transferosomes, pharmacosomes, ufasomes, phytosomes, catanionic vesicles, and extracellular vesicles.
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- 2021
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4. Micro/Nanopatterned Superhydrophobic Surfaces Fabrication for Biomolecules and Biomaterials Manipulation and Analysis
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Marco Allione, Tania Limongi, Monica Marini, Bruno Torre, Peng Zhang, Manola Moretti, Gerardo Perozziello, Patrizio Candeloro, Lucia Napione, Candido Fabrizio Pirri, and Enzo Di Fabrizio
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superhydrophobic surfaces ,micro/nanofabrication ,biomolecules ,Mechanical engineering and machinery ,TJ1-1570 - Abstract
Superhydrophobic surfaces display an extraordinary repulsion to water and water-based solutions. This effect emerges from the interplay of intrinsic hydrophobicity of the surface and its morphology. These surfaces have been established for a long time and have been studied for decades. The increasing interest in recent years has been focused towards applications in many different fields and, in particular, biomedical applications. In this paper, we review the progress achieved in the last years in the fabrication of regularly patterned superhydrophobic surfaces in many different materials and their exploitation for the manipulation and characterization of biomaterial, with particular emphasis on the issues affecting the yields of the fabrication processes and the quality of the manufactured devices.
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- 2021
- Full Text
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5. DNA Studies: Latest Spectroscopic and Structural Approaches
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Monica Marini, Francesca Legittimo, Bruno Torre, Marco Allione, Tania Limongi, Luciano Scaltrito, Candido Fabrizio Pirri, and Enzo di Fabrizio
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nucleic acids ,microfabrication ,electron microscopy ,atomic force microscopy ,Raman spectroscopy ,Mechanical engineering and machinery ,TJ1-1570 - Abstract
This review looks at the different approaches, techniques, and materials devoted to DNA studies. In the past few decades, DNA nanotechnology, micro-fabrication, imaging, and spectroscopies have been tailored and combined for a broad range of medical-oriented applications. The continuous advancements in miniaturization of the devices, as well as the continuous need to study biological material structures and interactions, down to single molecules, have increase the interdisciplinarity of emerging technologies. In the following paragraphs, we will focus on recent sensing approaches, with a particular effort attributed to cutting-edge techniques for structural and mechanical studies of nucleic acids.
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- 2021
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6. Development of the Olfactory Epithelium and Nasal Glands in TMEM16A-/- and TMEM16A+/+ Mice.
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Devendra Kumar Maurya, Tiago Henriques, Monica Marini, Nicoletta Pedemonte, Luis J V Galietta, Jason R Rock, Brian D Harfe, and Anna Menini
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Medicine ,Science - Abstract
TMEM16A/ANO1 is a calcium-activated chloride channel expressed in several types of epithelia and involved in various physiological processes, including proliferation and development. During mouse embryonic development, the expression of TMEM16A in the olfactory epithelium is dynamic. TMEM16A is expressed at the apical surface of the entire olfactory epithelium at embryonic day E12.5 while from E16.5 its expression is restricted to a region near the transition zone with the respiratory epithelium. To investigate whether TMEM16A plays a role in the development of the mouse olfactory epithelium, we obtained the first immunohistochemistry study comparing the morphological properties of the olfactory epithelium and nasal glands in TMEM16A-/- and TMEM16A+/+ littermate mice. A comparison between the expression of the olfactory marker protein and adenylyl cyclase III shows that genetic ablation of TMEM16A did not seem to affect the maturation of olfactory sensory neurons and their ciliary layer. As TMEM16A is expressed at the apical part of supporting cells and in their microvilli, we used ezrin and cytokeratin 8 as markers of microvilli and cell body of supporting cells, respectively, and found that morphology and development of supporting cells were similar in TMEM16A-/- and TMEM16A+/+ littermate mice. The average number of supporting cells, olfactory sensory neurons, horizontal and globose basal cells were not significantly different in the two types of mice. Moreover, we also observed that the morphology of Bowman's glands, nasal septal glands and lateral nasal glands did not change in the absence of TMEM16A. Our results indicate that the development of mouse olfactory epithelium and nasal glands does not seem to be affected by the genetic ablation of TMEM16A.
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- 2015
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7. Correction: Corrigendum: Geographic population structure analysis of worldwide human populations infers their biogeographical origins
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Eran Elhaik, Tatiana Tatarinova, Dmitri Chebotarev, Ignazio S. Piras, Carla Maria Calò, Antonella De Montis, Manuela Atzori, Monica Marini, Sergio Tofanelli, Paolo Francalacci, Luca Pagani, Chris Tyler-Smith, Yali Xue, Francesco Cucca, Theodore G. Schurr, Jill B. Gaieski, Carlalynne Melendez, Miguel G. Vilar, Amanda C. Owings, Rocío Gómez, Ricardo Fujita, Fabrício R. Santos, David Comas, Oleg Balanovsky, Elena Balanovska, Pierre Zalloua, Himla Soodyall, Ramasamy Pitchappan, ArunKumar GaneshPrasad, Michael Hammer, Lisa Matisoo-Smith, and R. Spencer Wells
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Science - Abstract
Nature Communications 5: Article number: 3513 (2014); Published: 29 April 2016; Updated: 31 October 2016 This article was published without any competing financial interests statement. A revised declaration that lists potentially competing financial interests is provided below: A.D.M., M.M. and M.A.are affiliated with Bcs Biotech S.
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- 2016
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8. Pollice verde 2.0: una nuova risorsa per un invecchiamento attivo
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Marco Guicciardi, Daniela Loi, Andrea Manca, Monica Marini, Riccardo Pazzona, and Luigi Raffo
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Health (social science) ,Applied Psychology - Abstract
L'orticoltura può influire positivamente sul benessere delle persone anziane, contrastando il declino fisico e cognitivo e migliorando la qualità della vita. Le moderne tecnologie fornisco-no un valido supporto per incoraggiare lo svolgimento di tali attività e promuovere uno stile di vita attivo. Il presente studio esplorativo si propone di valutare gli effetti di attività di orticultura comunitaria supportate da una piattaforma digitale in un campione misto di partecipanti over 60 durante il periodo della pandemia da COVID-19. I partecipanti di età superiore ai sessanta anni hanno preso parte ad un percorso della durata di sei mesi, diviso in due periodi. Durante i primi tre mesi i partecipanti si sono limitati a rispondere ai test che indagavano le seguenti va-riabili psicologiche: autostima, solitudine, depressione, qualità della vita, affetti, supporto sociale e funzionamento cognitivo. Nei successivi tre mesi i partecipanti sono stati coinvolti in attività di orticoltura, supportate da applicazioni digitali accessibili tramite smartphone, cui ha fatto seguito la rilevazione delle stesse variabili psicologiche. Gli effetti dell'orticultura sono stati valutati confrontando le due serie di rilevazioni. I risultati mostrano un incremento della qualità della vita degli anziani, delle funzioni cognitive e, in misura minore, del benessere soggettivo. Gli anziani che risultano spo-sati o conviventi manifestano in genere una migliore qualità della vita e a seguito dell'intervento sono meno propensi ad esprimere stati affettivi negativi. Non sono stati evidenziati segni di depressione. L'orticultura assistita digitalmente può migliorare la qualità della vita degli anziani durante la pandemia da COVID-19.
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- 2022
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9. Self‐sieving DNA over superhydrophobic surfaces: A Raman spectroscopy study
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Monica Marini, Bruno Torre, Marco Allione, Tania Limongi, Francesca Legittimo, Andrea Giugni, Carlo Ricciardi, Candido Fabrizio Pirri, and Enzo di Fabrizio
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General Materials Science ,Spectroscopy - Published
- 2022
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10. Real-Time Monitoring of Temperature-Dependent Structural Transitions in DNA Nanomechanical Resonators: Unveiling the DNA-Ligand Interactions for Biomedical Applications
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Francesca Legittimo, Monica Marini, Stefano Stassi, Enzo Di Fabrizio, and Carlo Ricciardi
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nano-biosensing ,DNA−ligand complexes ,structural transitions ,DNA structure ,mechanical nanoresonator ,General Materials Science - Published
- 2023
11. Featured Cover
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Monica Marini, Bruno Torre, Marco Allione, Tania Limongi, Francesca Legittimo, Andrea Giugni, Carlo Ricciardi, Candido Fabrizio Pirri, and Enzo di Fabrizio
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General Materials Science ,Spectroscopy - Published
- 2022
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12. Management of overlapping immune-related myocarditis, myositis, and myasthenia in a young patient with advanced NSCLC: a case report
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Monica Mariniello, Giulia Arrivi, Laura Tufano, Antonio Lauletta, Mirella Moro, Giacomo Tini, Matteo Garibaldi, Raffaele Giusti, and Federica Mazzuca
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immune check inhibitor (ICI) ,myositis ,myocarditis ,myasthenia gravis ,corticosteriods ,immunoglobulin ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Immunotherapy is increasingly used in advanced non-small-cell lung cancer (NSCLC), offering a significant anti-tumor response, as well as causing rising immune-related adverse effects. The incidence of immune checkpoint inhibitor-induced myocarditis–myositis–myasthenia gravis is increasing and particularly concerning due to its high mortality rate. Prompt recognition, diagnosis, and management are crucial. A 40-year-old patient, diagnosed with stage IV non-oncogene addicted lung adenocarcinoma, with nivolumab–ipilimumab–chemotherapy as first-line treatment, developed a rare myocarditis–myositis–myasthenia gravis overlap syndrome. Following the treatment, the patient presented with flu-like symptoms and chest pain and subsequently transferred to the cardiac intensive care unit. The physical examination revealed a visual acuity deficit, diplopia, ophthalmoparesis, ptosis, mydriasis, dysphagia, dyspnea, headache, nausea, dry mouth, asthenia, myalgia, and muscle weakness. Imaging and laboratory tests confirmed the triad, showing an elevation of hs-cTnI and CK and positive results for anti-SAE1 and anti-PL-7 Abs. ECG revealed ST segment elevation and RBBB. The echo showed hyperechogenicity of the inferolateral wall, pericardial detachment, and thickening. The cardiac MRI demonstrated hypokinesia, edema, subepicardial LGE, and pericardial effusion. Muscle biopsy revealed muscle fiber necrosis and regeneration with B and T lymphocytic endomysial inflammatory infiltrate and expression of MHC-I. Treatment with oral prednisone, pyridostigmine, and IV Igs was started due to poor clinical response followed by methylprednisolone. Despite stopping immunotherapy, the patient continued to benefit from it, as highlighted on subsequent re-evaluation CT scans by partial disease response, and as the patient was in complete remission, we decided to resume chemotherapy by omitting immunotherapy. At the radiological control following the four cycles of double CHT and during CHT maintenance, there was a further reduction of the disease. This report aims to raise awareness among physicians about these serious side effects. A multidisciplinary approach led to clinical improvement and early intervention, optimizing patient outcomes.
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- 2024
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13. Direct Visualization and Identification of Membrane Voltage-Gated Sodium Channels from Human iPSC-Derived Neurons by Multiple Imaging and Light Enhanced Spectroscopy
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Manola Moretti, Tania Limongi, Claudia Testi, Edoardo Milanetti, Maria Teresa De Angelis, Elvira I. Parrotta, Stefania Scalise, Gianluca Santamaria, Marco Allione, Sergei Lopatin, Bruno Torre, Peng Zhang, Monica Marini, Gerardo Perozziello, Patrizio Candeloro, Candido Fabrizio Pirri, Giancarlo Ruocco, Giovanni Cuda, and Enzo Di Fabrizio
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raman ,Neurons ,spectroscopy ,polynomial ,Spectrum Analysis ,Cell Membrane ,Induced Pluripotent Stem Cells ,Voltage-Gated Sodium Channels ,General Chemistry ,surfaces ,channels ,zernike ,voltage ,TEM ,gated ,Humans ,superhydrophobic ,General Materials Science ,AFM ,sodium - Abstract
In this study, transmission electron microscopy atomic force microscopy, and surface enhanced Raman spectroscopy are combined through a direct imaging approach, to gather structural and chemical information of complex molecular systems such as ion channels in their original plasma membrane. Customized microfabricated sample holder allows to characterize Na
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- 2022
14. Nanomechanical DNA resonators for sensing and structural analysis of DNA-ligand complexes
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Carlo Ricciardi, Sabrina Pricl, Candido Pirri, Sergei Lopatin, Marco Allione, Monica Marini, Domenico Marson, Erik Laurini, Stefano Stassi, Enzo Di Fabrizio, Stassi, Stefano, Marini, Monica, Allione, Marco, Lopatin, Sergei, Marson, Domenico, Laurini, Erik, Pricl, Sabrina, Pirri, Candido Fabrizio, Ricciardi, Carlo, and Di Fabrizio, Enzo
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Genetics and Molecular Biology (all) ,0301 basic medicine ,General Physics and Astronomy ,02 engineering and technology ,Crystallography, X-Ray ,Ligands ,Biochemistry ,Molecular dynamics ,chemistry.chemical_compound ,DNA ,resonators ,sensing ,intarcalants ,modeling ,Cisplatin ,Yoyo-1 ,mechanical behavior ,structural properties ,biological functions ,Neoplasms ,Scanning ,lcsh:Science ,Microscopy ,Crystallography ,Multidisciplinary ,Chemistry (all) ,021001 nanoscience & nanotechnology ,Intercalating Agents ,Nanomedicine ,intarcalant ,resonator ,0210 nano-technology ,medicine.drug ,Protein Binding ,Science ,structural propertie ,Antineoplastic Agents ,Molecular Dynamics Simulation ,Stress ,Electron ,Fluorescence ,General Biochemistry, Genetics and Molecular Biology ,Article ,Physics and Astronomy (all) ,03 medical and health sciences ,medicine ,Molecule ,Microscopy, Electron, Scanning ,Microscopy, Fluorescence ,Stress, Mechanical ,Biochemistry, Genetics and Molecular Biology (all) ,Ligand ,General Chemistry ,Mechanical ,030104 developmental biology ,GelRed ,chemistry ,X-Ray ,Biophysics ,lcsh:Q ,sense organs ,Biosensor - Abstract
The effect of direct or indirect binding of intercalant molecules on DNA structure is of fundamental importance in understanding the biological functioning of DNA. Here we report on self-suspended DNA nanobundles as ultrasensitive nanomechanical resonators for structural studies of DNA-ligand complexes. Such vibrating nanostructures represent the smallest mechanical resonator entirely composed of DNA. A correlative analysis between the mechanical and structural properties is exploited to study the intrinsic changes of double strand DNA, when interacting with different intercalant molecules (YOYO-1 and GelRed) and a chemotherapeutic drug (Cisplatin), at different concentrations. Possible implications of our findings are related to the study of interaction mechanism of a wide category of molecules with DNA, and to further applications in medicine, such as optimal titration of chemotherapeutic drugs and environmental studies for the detection of heavy metals in human serum., Intercalating molecules can significantly change the conformation of DNA. Here, the authors fabricated resonators fully composed of DNA forming bundles between microfabricated pillars to study the vibration property of the DNA bundles with/without intercalant molecules.
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- 2019
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15. Direct Visualization and Identification of Membrane Voltage‐Gated Sodium Channels from Human iPSC‐Derived Neurons by Multiple Imaging and Light Enhanced Spectroscopy (Small Methods 7/2022)
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Manola Moretti, Tania Limongi, Claudia Testi, Edoardo Milanetti, Maria Teresa De Angelis, Elvira I. Parrotta, Stefania Scalise, Gianluca Santamaria, Marco Allione, Sergei Lopatin, Bruno Torre, Peng Zhang, Monica Marini, Gerardo Perozziello, Patrizio Candeloro, Candido Fabrizio Pirri, Giancarlo Ruocco, Giovanni Cuda, and Enzo Di Fabrizio
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General Materials Science ,General Chemistry - Published
- 2022
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16. Micro/nanopatterned superhydrophobic surfaces fabrication for biomolecules and biomaterials manipulation and analysis
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Patrizio Candeloro, Bruno Torre, Peng Zhang, Lucia Napione, Tania Limongi, Marco Allione, Gerardo Perozziello, Enzo Di Fabrizio, Manola Moretti, Candido Pirri, and Monica Marini
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chemistry.chemical_classification ,Biomolecules ,Fabrication ,Materials science ,Mechanical Engineering ,Biomolecule ,Micro/nanofabrication ,Biomaterial ,Nanotechnology ,Review ,Characterization (materials science) ,chemistry ,Superhydrophobic surfaces ,Control and Systems Engineering ,TJ1-1570 ,Mechanical engineering and machinery ,Electrical and Electronic Engineering - Abstract
Superhydrophobic surfaces display an extraordinary repulsion to water and water-based solutions. This effect emerges from the interplay of intrinsic hydrophobicity of the surface and its morphology. These surfaces have been established for a long time and have been studied for decades. The increasing interest in recent years has been focused towards applications in many different fields and, in particular, biomedical applications. In this paper, we review the progress achieved in the last years in the fabrication of regularly patterned superhydrophobic surfaces in many different materials and their exploitation for the manipulation and characterization of biomaterial, with particular emphasis on the issues affecting the yields of the fabrication processes and the quality of the manufactured devices.
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- 2021
17. A droplet reactor on a super-hydrophobic surface allows control and characterization of amyloid fibril growth
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Cinzia Giannini, Manola Moretti, Bruno Torre, Davide Altamura, Yuansi Tian, Erqiang Li, Enzo Di Fabrizio, Natalia Malara, Javier Ordonez-Loza, Andrea Giugni, Peng Zhang, Francesco Gentile, Marco Allione, S. Mani Sarathy, Ida Autiero, Sigurdur T. Thoroddsen, Gobind Das, and Monica Marini
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Amyloid ,Protein Folding ,Materials science ,Convective flow ,Future studies ,Medicine (miscellaneous) ,Peptide ,02 engineering and technology ,macromolecular substances ,Molecular Dynamics Simulation ,Fibril ,Microscopy, Atomic Force ,complex mixtures ,Spectrum Analysis ,Structure-Activity Relationship ,X-Ray Diffraction ,Hydrophobic and Hydrophilic Interactions ,Protein Aggregates ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,Molecular dynamics ,symbols.namesake ,Microscopy ,Biopolymers in vivo ,lcsh:QH301-705.5 ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Lab-on-a-chip ,technology, industry, and agriculture ,Atomic Force ,021001 nanoscience & nanotechnology ,Amyloid fibril ,lcsh:Biology (General) ,chemistry ,Raman spectroscopy ,Biophysics ,symbols ,0210 nano-technology ,General Agricultural and Biological Sciences - Abstract
Methods to produce protein amyloid fibrils, in vitro, and in situ structure characterization, are of primary importance in biology, medicine, and pharmacology. We first demonstrated the droplet on a super-hydrophobic substrate as the reactor to produce protein amyloid fibrils with real-time monitoring of the growth process by using combined light-sheet microscopy and thermal imaging. The molecular structures were characterized by Raman spectroscopy, X-ray diffraction and X-ray scattering. We demonstrated that the convective flow induced by the temperature gradient of the sample is the main driving force in the growth of well-ordered protein fibrils. Particular attention was devoted to PHF6 peptide and full-length Tau441 protein to form amyloid fibrils. By a combined experimental with the molecular dynamics simulations, the conformational polymorphism of these amyloid fibrils were characterized. The study provided a feasible procedure to optimize the amyloid fibrils formation and characterizations of other types of proteins in future studies., Zhang et al present an integrated real-time imaging and flow field control platform based on water droplet evaporation on super-hydrophobic substrate (SHS) to enable amyloid fibril aggregation. They apply this methodology to observe structural polymorphism in PHF6 peptide and full length Tau441.
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- 2020
18. Suspended DNA structural characterization by TEM diffraction
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Bruno Torre, Andrea Giugni, Marco Allione, Enzo Di Fabrizio, Monica Marini, Sergei Lopatin, and Manola Moretti
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Diffraction ,Materials science ,Nanotechnology ,02 engineering and technology ,engineering.material ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Metrology ,law.invention ,Characterization (materials science) ,Coating ,law ,Transmission electron microscopy ,engineering ,Molecule ,Electrical and Electronic Engineering ,Crystallization ,0210 nano-technology ,High-resolution transmission electron microscopy - Abstract
In this work, micro-fabrication, super-hydrophobic properties and a physiologically compatible preparation step are combined and tailored to obtain background free biological samples to be investigated by Transmission Electron Microscopy (TEM) diffraction technique. The validation was performed evaluating a well-known parameter such as the DNA interbases value. The diffraction spacing measured is in good agreement with those obtained by HRTEM direct metrology and by traditional X-Ray diffraction. This approach addresses single molecule studies in a simplified and reproducible straightforward way with respect to more conventional and widely used techniques. In addition, it overcomes the need of long and elaborated samples preparations: the sample is in its physiological environment and the HRTEM data acquisition occurs without any background interference, coating, staining or additional manipulation. The congruence in the results reported in this paper makes the application of this approach extremely promising towards those molecules for which crystallization remains a hurdle, such as cell membrane proteins and fibrillar proteins.
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- 2018
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19. Dynamic structure mediates halophilic adaptation of a DNA polymerase from the deep-sea brines of the Red Sea
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Ulrich Stingl, Intikhab Alam, Jasmeen S. Merzaban, Etsuko Takahashi, Anastassja Akal, Luay I. Joudeh, Gobind Das, Samir M. Hamdan, Enzo Di Fabrizio, Muhammad Tehseen, Mohamed Abdelmaboud Sobhy, Masateru Takahashi, Mohamed M. Elshenawy, Monica Marini, Kosuke Sakashita, Joudeh, Luay [0000-0001-9338-205X], and Apollo - University of Cambridge Repository
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0301 basic medicine ,DNA polymerase engineering ,Circular dichroism ,Halophilic enzymes ,Structural adaptation ,Structure dynamism ,Thermophilic enzymes ,Archaeal Proteins ,DNA-Directed DNA Polymerase ,Indian Ocean ,Thermococcus ,Molecular Dynamics Simulation ,DNA polymerase ,Biochemistry ,03 medical and health sciences ,halophilic enzymes ,Genetics ,structural adaptation ,A-DNA ,Molecular Biology ,Polymerase ,biology ,Chemistry ,Thermophile ,Research ,structure dynamism ,Salt bridge (protein and supramolecular) ,Anoxic waters ,Halophile ,030104 developmental biology ,biology.protein ,Biophysics ,Biotechnology ,thermophilic enzymes - Abstract
The deep-sea brines of the Red Sea are remote and unexplored environments characterized by high temperatures, anoxic water, and elevated concentrations of salt and heavy metals. This environment provides a rare system to study the interplay between halophilic and thermophilic adaptation in biologic macromolecules. The present article reports the first DNA polymerase with halophilic and thermophilic features. Biochemical and structural analysis by Raman and circular dichroism spectroscopy showed that the charge distribution on the protein's surface mediates the structural balance between stability for thermal adaptation and flexibility for counteracting the salt-induced rigid and nonfunctional hydrophobic packing. Salt bridge interactions via increased negative and positive charges contribute to structural stability. Salt tolerance, conversely, is mediated by a dynamic structure that becomes more fixed and functional with increasing salt concentration. We propose that repulsive forces among excess negative charges, in addition to a high percentage of negatively charged random coils, mediate this structural dynamism. This knowledge enabled us to engineer a halophilic version of Thermococcus kodakarensis DNA polymerase.-Takahashi, M., Takahashi, E., Joudeh, L. I., Marini, M., Das, G., Elshenawy, M. M., Akal, A., Sakashita, K., Alam, I., Tehseen, M., Sobhy, M. A., Stingl, U., Merzaban, J. S., Di Fabrizio, E., Hamdan, S. M. Dynamic structure mediates halophilic adaptation of a DNA polymerase from the deep-sea brines of the Red Sea.
- Published
- 2018
20. DNA Studies: Latest Spectroscopic and Structural Approaches
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Tania Limongi, Luciano Scaltrito, Marco Allione, Candido Pirri, Monica Marini, Francesca Legittimo, Bruno Torre, and Enzo Di Fabrizio
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0303 health sciences ,Computer science ,Atomic force microscopy ,Emerging technologies ,Mechanical Engineering ,Nanotechnology ,Review ,010402 general chemistry ,01 natural sciences ,Electron microscopy ,Microfabrication ,Nucleic acids ,Raman spectroscopy ,Biological materials ,0104 chemical sciences ,03 medical and health sciences ,Control and Systems Engineering ,DNA nanotechnology ,TJ1-1570 ,Mechanical engineering and machinery ,Electrical and Electronic Engineering ,030304 developmental biology - Abstract
This review looks at the different approaches, techniques, and materials devoted to DNA studies. In the past few decades, DNA nanotechnology, micro-fabrication, imaging, and spectroscopies have been tailored and combined for a broad range of medical-oriented applications. The continuous advancements in miniaturization of the devices, as well as the continuous need to study biological material structures and interactions, down to single molecules, have increase the interdisciplinarity of emerging technologies. In the following paragraphs, we will focus on recent sensing approaches, with a particular effort attributed to cutting-edge techniques for structural and mechanical studies of nucleic acids.
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- 2021
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21. Imaging and structural studies of DNA–protein complexes and membrane ion channels
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E. Di Fabrizio, Tania Limongi, Luca Tirinato, Sergei Lopatin, Gobind Das, Manola Moretti, Fabio Benfenati, Fabrizia Cesca, Monica Marini, Marco Allione, Bruno Torre, Andrea Falqui, Andrea Giugni, Alessandro Genovese, Marini, M, Limongi, T, Falqui, A, Genovese, A, Allione, M, Moretti, M, Lopatin, S, Tirinato, L, Das, G, Torre, B, Giugni, A, Cesca, F, Benfenati, F, and Di Fabrizio, E.
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0301 basic medicine ,Materials science ,Lipid Bilayers ,Nanotechnology ,Inbred C57BL ,Electron ,Ion Channels ,Mice ,03 medical and health sciences ,Microscopy, Electron, Transmission ,Nucleic Acids ,Microscopy ,Animals ,Transmission ,General Materials Science ,Lipid bilayer ,High-resolution transmission electron microscopy ,Ion channel ,Neurons ,Resolution (electron density) ,DNA ,Mice, Inbred C57BL ,030104 developmental biology ,Membrane ,N/A ,Biophysics ,Nucleic acid ,Rad51 Recombinase ,Macromolecule - Abstract
In bio-imaging by electron microscopy, damage of the sample and limited contrast are the two main hurdles for reaching high image quality. We extend a new preparation method based on nanofabrication and super-hydrophobicity to the imaging and structural studies of nucleic acids, nucleic acid–protein complexes (DNA/Rad51 repair protein complex) and neuronal ion channels (gap-junction, K+ and GABAA channels) as paradigms of biological significance and increasing complexity. The preparation method is based on the liquid phase and is compatible with physiological conditions. Only in the very last stage, samples are dried for TEM analysis. Conventional TEM and high-resolution TEM (HRTEM) were used to achieve a resolution of 3.3 and 1.5 Å, respectively. The EM dataset quality allows the determination of relevant structural and metrological information on the DNA structure, DNA–protein interactions and ion channels, allowing the identification of specific macromolecules and their structure.
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- 2017
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22. Confined laminar flow on a super-hydrophobic surface drives the initial stages of tau protein aggregation
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Bruno Torre, Monica Marini, Manola Moretti, Marco Allione, Gobind Das, Andrea Giugni, and Enzo Di Fabrizio
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0301 basic medicine ,Materials science ,Confined laminar flow ,03 medical and health sciences ,symbols.namesake ,0302 clinical medicine ,Shear stress ,Tau protein ,Molecule ,Electrical and Electronic Engineering ,Protein secondary structure ,chemistry.chemical_classification ,Drop (liquid) ,Biomolecule ,Laminar flow ,Super-hydrophobic device ,Condensed Matter Physics ,Microstructure ,Atomic and Molecular Physics, and Optics ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,030104 developmental biology ,chemistry ,Amyloid β-sheet ,Chemical physics ,Raman spectroscopy ,symbols ,030217 neurology & neurosurgery - Abstract
Super-hydrophobic micro-patterned surfaces are ideal substrates for the controlled self-assembly and substrate-free characterization of biological molecules. In this device, the tailored surface supports a micro-volume drop containing the molecules of interest. While the quasi-spherical drop is evaporating under controlled conditions, its de-wetting direction is guided by the pillared microstructure on top of the device, leading to the formation of threads between the neighboring pillars. This effect has been exploited here to elucidate the mechanism triggering the formation of amyloid fibers and oligomers in tau related neurodegenerative diseases. By using Raman spectroscopy, we demonstrate that the fiber bridging the pillars contains β-sheets, a characteristic feature of amyloid aggregation. We propose that the combination of laminar flow, shear stress and molecular crowding taking place while the drop is evaporating on the SHMS, induces the reorganization of the tau protein secondary structure and we suggest that this effect could in fact closely mimic the actual mechanism occurring in the human brain environment. Such a straightforward technique opens up new possibilities in the field of self-assembly of biomolecules and their characterization by different methods (SEM, AFM, Raman spectroscopy, TEM), in a single device.
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- 2018
23. High-throughput screening identifies FAU protein as a regulator of mutant cystic fibrosis transmembrane conductance regulator channel
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Emanuela Pesce, Monica Marini, Felice Amato, Emanuela Caci, Roberto Ravazzolo, Elvira Sondo, Paolo Scudieri, Luis J. V. Galietta, Nicoletta Pedemonte, Valeria Tomati, Giuseppe Castaldo, Tomati, Valeria, Pesce, Emanuela, Caci, Emanuela, Sondo, Elvira, Scudieri, Paolo, Marini, Monica, Amato, Felice, Castaldo, Giuseppe, Ravazzolo, Roberto, Galietta, Luis J. V., and Pedemonte, Nicoletta
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0301 basic medicine ,Ribosomal Proteins ,chloride channel ,congenital, hereditary, and neonatal diseases and abnormalities ,Mutant ,Regulator ,Cystic Fibrosis Transmembrane Conductance Regulator ,interactome ,Bronchi ,Biochemistry ,Interactome ,Cystic fibrosis ,cystic fibrosis ,Cell membrane ,03 medical and health sciences ,high-throughput screening (HTS) ,medicine ,Gene silencing ,Humans ,Molecular Biology ,cystic fibrosi ,cystic fibrosis transmembrane conductance regulator (CFTR) ,small interfering RNA (siRNA) ,Cell Membrane ,Epithelial Cells ,Proteolysis ,Mutation ,biology ,Chemistry ,Molecular Bases of Disease ,Cell Biology ,respiratory system ,medicine.disease ,Cystic fibrosis transmembrane conductance regulator ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,Cancer research ,biology.protein ,Chloride channel - Abstract
In cystic fibrosis, deletion of phenylalanine 508 (F508del) in the cystic fibrosis transmembrane conductance regulator (CFTR) anion channel causes misfolding and premature degradation. One possible approach to reducing the detrimental health effects of cystic fibrosis could be the identification of proteins whose suppression rescues F508del-CFTR function in bronchial epithelial cells. However, searches for these potential targets have not yet been conducted, particularly in a relevant airway background using a functional readout. To identify proteins associated with F508del-CFTR processing, we used a high-throughput functional assay to screen an siRNA library targeting 6,650 different cellular proteins. We identified 37 proteins whose silencing significantly rescued F508del-CFTR activity, as indicated by enhanced anion transport through the plasma membrane. These proteins included FAU, UBE2I, UBA52, MLLT6, UBA2, CHD4, PLXNA1, and TRIM24, among others. We focused our attention on FAU, a poorly characterized protein with unknown function. FAU knockdown increased the plasma membrane targeting and function of F508del-CFTR, but not of wild-type CFTR. Investigation into the mechanism of action revealed a preferential physical interaction of FAU with mutant CFTR, leading to its degradation. FAU and other proteins identified in our screening may offer a therapeutically relevant panel of drug targets to correct basic defects in F508del-CFTR processing.
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- 2017
24. Raman study of lysozyme amyloid fibrils suspended on super-hydrophobic surfaces by shear flow
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Enzo Di Fabrizio, Tania Limongi, Gobind Das, Andrea Giugni, Manola Moretti, Bruno Torre, Monica Marini, and Marco Allione
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Materials science ,Analytical chemistry ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,law.invention ,symbols.namesake ,law ,Molecule ,Fiber ,Electrical and Electronic Engineering ,Composite material ,Anisotropy ,Protein secondary structure ,Amyloid fibrils ,Quantitative Biology::Biomolecules ,Raman spectroscopy ,Super-hydrophobic micro-patterned surfaces ,β-sheet secondary structure ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Polarization (waves) ,Laser ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,symbols ,0210 nano-technology ,Shear flow - Abstract
The shear flow generated at the rim of a drop evaporating on a micro-fabricated super-hydrophobic surface has been used to suspend and orient single/few lysozyme amyloid fibrils between two pillars for substrate-free characterization. Micro Raman spectroscopy performed on extended fibers evidenced a shift of the Amide I band main peak to the value attributed to β-sheet secondary structure, characteristic of the amyloid fibers. In addition, given the orientation sensitivity of the anisotropic molecule, the Raman signal of the main secondary structure was nicely enhanced for a fiber alignment parallel to the polarization direction of the laser. The substrate-free sample generated by this suspending technique is suitable for other structural analysis methods, where fiber crystals are investigated. It could be further employed for generation of arrays and patterns in a controllable fashion, where bio-compatible material is needed.
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- 2017
25. Raman on suspended DNA: Novel super-hydrophobic approach for structural studies
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Luca Tirinato, Tania Limongi, Manola Moretti, Enzo Di Fabrizio, Gobind Das, Bruno Torre, Monica Marini, Marco Allione, and Andrea Giugni
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Supramolecular chemistry ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,symbols.namesake ,chemistry.chemical_compound ,Microscopy ,Molecule ,Nucleotide ,B-form ,Electrical and Electronic Engineering ,chemistry.chemical_classification ,A-form ,DNA ,Raman spectroscopy ,Super-hydrophobic devices ,Biomolecule ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Crystallography ,Deoxyribose ,chemistry ,symbols ,0210 nano-technology - Abstract
The A- and B-form are two of the most common structural conformations of double strand DNA present in nature and they can interchange on the basis of the helices hydration [1,2]. Herein we demonstrate that the use of non-destructive techniques such as Raman spectroscopy coupled with the use of a super-hydrophobic device, allows the clear identification of the DNA hydration state, of the backbone (phosphate+deoxyribose sugar) conformation and of the nucleotides. There is a wide prospect for an increase of knowledge in biomolecules using this combined approach resulting in a significant impact in the study of more complex supramolecular assemblies and of fine chemical variation along the genomic loci undergoing to epigenetic variations. Display Omitted Non-destructive Raman spectroscopy technique coupled with super-hydrophobic devices for biological fibers investigationSuper-hydrophobic surfaces comprising micro-pillars for DNA localizationDiscrimination between A- and B-form of dsDNA suspended between micro-pillars by means of Raman analysis.Electron Microscopy preliminary investigation of suspended dsDNA molecules
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- 2017
26. Laboratory injection molder for the fabrication of polymeric porous poly-epsilon-caprolactone scaffolds for preliminary mesenchymal stem cells tissue engineering applications
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Francesca Pagliari, Andrea Falqui, Lucia Lizzul, Bruno Torre, Tania Limongi, Andrea Giugni, Manola Moretti, Monica Marini, Enzo Di Fabrizio, Hua Tan, Gobind Das, Cristiano Di Benedetto, Giovanna Brusatin, and Luca Tirinato
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0301 basic medicine ,Fabrication ,Materials science ,Biocompatibility ,Scanning electron microscope ,Particulate leaching ,Plastics extrusion ,Biopolymers ,Injection molding ,Stem cells ,Tissue engineering ,Electronic, Optical and Magnetic Materials ,Atomic and Molecular Physics, and Optics ,Condensed Matter Physics ,Surfaces, Coatings and Films ,Electrical and Electronic Engineering ,02 engineering and technology ,Coatings and Films ,03 medical and health sciences ,Atomic and Molecular Physics ,Electronic ,Optical and Magnetic Materials ,Composite material ,Porosity ,Mesenchymal stem cell ,technology, industry, and agriculture ,equipment and supplies ,021001 nanoscience & nanotechnology ,Surfaces ,030104 developmental biology ,Chemical engineering ,Leaching (metallurgy) ,and Optics ,0210 nano-technology - Abstract
This study presents a simple and rapid fabrication technique involving injection molding and particle leaching (IM/PL) to fabricate the porous scaffold for tissue engineering applications. Sodium Chloride (NaCl) and Sucrose are separately mixed with the poly-epsilon-caprolactone (PCL) granules using a screwed thermo-regulated extruder, then the biocompatible scaffolds are fabricated through injection molding. The micro/nano-structure of the samples and their different grade of porosity were characterized by scanning electron microscopy and mercury intrusion porosimetry. Bone marrow-derived mesenchymal stem cells are chosen for cell culture and Hoechst 33342 staining was used to verify the biocompatibility of the polymeric porous surfaces. We concluded that, by using the same fast solvent free injection/leaching process, the use of Sucrose as porogen, instead of NaCl, allowed the obtainment of biocompatible scaffolds with a higher grade of porosity with suitable cell adhesion capacity for tissue engineering purpose. PCL/NaCl, PCL/Sucrose composites were injection molded.Particulate leaching confers to the scaffolds different grades of porosity.Human hMSCs have attached, survived and proliferated well on PCL/Sucrose scaffolds.Molded PCL/Sucrose scaffolds could be good candidates for tissue engineering. Display Omitted
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- 2017
27. An Overview of Lipid Droplets in Cancer and Cancer Stem Cells
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Tania Limongi, Monica Marini, Patrizio Candeloro, E. Di Fabrizio, Luca Tirinato, Joao Seco, Francesca Pagliari, Carlo Liberale, and Andrea Falqui
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0301 basic medicine ,lcsh:Internal medicine ,Lipid composition ,Cancer ,Cell Biology ,Review Article ,Biology ,medicine.disease ,Structure and function ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,Cancer stem cell ,Lipid droplet ,Cancer cell ,Organelle ,medicine ,lcsh:RC31-1245 ,Molecular Biology - Abstract
For decades, lipid droplets have been considered as the main cellular organelles involved in the fat storage, because of their lipid composition. However, in recent years, some new and totally unexpected roles have been discovered for them: (i) they are active sites for synthesis and storage of inflammatory mediators, and (ii) they are key players in cancer cells and tissues, especially in cancer stem cells. In this review, we summarize the main concepts related to the lipid droplet structure and function and their involvement in inflammatory and cancer processes.
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- 2017
28. Writing and Functionalisation of Suspended DNA Nanowires on Superhydrophobic Pillar Arrays
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Angelo Accardo, Monica Marini, Andrea Giugni, Andrea Falqui, Roman Krahne, Marco Leoncini, Francesco De Angelis, Ermanno Miele, and Enzo Di Fabrizio
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Materials science ,Fabrication ,Nanowires ,Nanowire ,Nanoparticle ,Nanotechnology ,DNA ,General Chemistry ,Substrate (printing) ,engineering.material ,Fluorescence ,Biomaterials ,Template ,Coating ,engineering ,General Materials Science ,Gold ,Hydrophobic and Hydrophilic Interactions ,Electrical conductor ,Biotechnology ,Electronic circuit - Abstract
Nanowire arrays and networks with precisely controlled patterns are very interesting for innovative device concepts in mesoscopic physics. In particular, DNA templates have proven to be versatile for the fabrication of complex structures that obtained functionality via combinations with other materials, for example by functionalisation with molecules or nanoparticles, or by coating with metals. Here, the controlled motion of the a three-phase contact line (TCL) of DNA-loaded drops on superhydrophobic substrates is used to fabricate suspended nanowire arrays. In particular, the deposition of DNA wires is imaged in situ, and different patterns are obtained on hexagonal pillar arrays by controlling the TCL velocity and direction. Robust conductive wires and networks are achieved by coating the wires with a thin layer of gold, and as proof of concept conductivity measurements are performed on single suspended wires. The plastic material of the superhydrophobic pillars ensures electrical isolation from the substrate. The more general versatility of these suspended nanowire networks as functional templates is outlined by fabricating hybrid organic-metal-semiconductor nanowires by growing ZnO nanocrystals onto the metal-coated nanowires.
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- 2014
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29. DNA aggregation controlled by super-hydrophobic devices
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Monica Marini, Marco Allione, and Enzo Di Fabrizio
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010302 applied physics ,Chemistry ,Mechanical Engineering ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,chemistry.chemical_compound ,Mechanics of Materials ,0103 physical sciences ,Biophysics ,General Materials Science ,0210 nano-technology ,DNA - Published
- 2018
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30. Correction: Corrigendum: Geographic population structure analysis of worldwide human populations infers their biogeographical origins
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Tatiana V. Tatarinova, Michael F. Hammer, Jill B. Gaieski, Ramasamy Pitchappan, Fabrício R. Santos, Paolo Francalacci, Oleg Balanovsky, Theodore G. Schurr, Ricardo Fujita, Rocío Gómez, Pierre Zalloua, R. Spencer Wells, Amanda C. Owings, Chris Tyler-Smith, Sergio Tofanelli, Luca Pagani, Antonella De Montis, David Comas, Manuela Atzori, Francesco Cucca, Carla Maria Calò, Himla Soodyall, Dmitri Chebotarev, Miguel G. Vilar, Yali Xue, Eran Elhaik, ArunKumar GaneshPrasad, Monica Marini, Elena Balanovska, Carlalynne Melendez, Ignazio S. Piras, and Lisa Matisoo-Smith
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0301 basic medicine ,Multidisciplinary ,Structure analysis ,Statement (logic) ,Science ,Declaration ,General Physics and Astronomy ,Geographic population ,General Chemistry ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,030104 developmental biology ,Geography ,Regional science - Abstract
Nature Communications 5: Article number: 3513 (2014); Published: 29 April 2016; Updated: 31 October 2016 This article was published without any competing financial interests statement. A revised declaration that lists potentially competing financial interests is provided below: A.D.M., M.M. and M.A.are affiliated with Bcs Biotech S.
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- 2016
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31. Direct imaging of single DNA molecules
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Enzo Di Fabrizio, Andrea Falqui, and Monica Marini
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010302 applied physics ,chemistry.chemical_compound ,Chemistry ,0103 physical sciences ,Biophysics ,Molecule ,Direct imaging ,02 engineering and technology ,021001 nanoscience & nanotechnology ,0210 nano-technology ,01 natural sciences ,DNA - Published
- 2016
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32. Day Care for older dementia patients: favorable effects on behavioral and psychological symptoms and caregiver stress
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Monica Marini, Enrico Mossello, Carlo Biagini, Eugenia Lopilato, Elena Razzi, Mauro Di Bari, Veronica Caleri, Niccolò Marchionni, Elisabetta Tonon, Giulio Masotti, David Simoni, Maria Chiara Cavallini, and Claudia Cantini
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Male ,medicine.medical_specialty ,Activities of daily living ,Home Nursing ,Day care ,Activities of Daily Living ,Adaptation, Psychological ,Humans ,Medicine ,Dementia ,Medical prescription ,Psychiatry ,Aged ,Aged, 80 and over ,Psychiatric Status Rating Scales ,Analysis of Variance ,business.industry ,Caregiver burden ,medicine.disease ,Mental health ,Psychiatry and Mental health ,Caregivers ,Case-Control Studies ,Caregiver stress ,Female ,Geriatrics and Gerontology ,business ,Day Care, Medical ,Stress, Psychological ,Follow-Up Studies ,Psychopathology - Abstract
Objective To assess the effects of Day Care (DC) on older subjects with dementia and their caregivers. Methods Thirty patients with dementia, consecutively admitted to a DC, were compared with 30 patients, matched for age and cognitive function, who received usual home care (HC). Primary caregivers were compared as well. At baseline and after 2 months, patients were assessed for cognitive and functional status, behavioral and psychological symptoms [Neuropsychiatric Inventory (NPI)] and psychotropic drugs use, and caregivers were evaluated for care burden [Caregiver Burden Inventory (CBI)] and depressive symptoms. Results After adjusting for potential confounders, NPI score significantly decreased in DC group, with a reduction of psychotropic drugs prescription, whereas it increased in HC. No significant between-group difference was observed for cognitive and functional change. CBI significantly decreased in DC, but not HC, caregivers, with no significant between-group difference in depressive symptoms change. Conclusions A 2-month period of DC assistance is effective in reducing behavioral and psychological symptoms of dementia patients and in alleviating caregivers' burden. Copyright © 2008 John Wiley & Sons, Ltd.
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- 2008
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33. Genetic Inhibition Of The Ubiquitin Ligase Rnf5 Attenuates Phenotypes Associated To F508del Cystic Fibrosis Mutation
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Valeria Tomati, Bob J. Scholte, Angela Pistorio, Emanuela Caci, Luis J. V. Galietta, Elvira Sondo, Young Ju Jeon, Emanuela Pesce, Nicoletta Pedemonte, Michele Cilli, Luca Mastracci, Andrea Armirotti, Ambra Gianotti, Roberto Ravazzolo, Ze'ev Ronai, Monica Marini, Tomati, Valeria, Sondo, Elvira, Armirotti, Andrea, Caci, Emanuela, Pesce, Emanuela, Marini, Monica, Gianotti, Ambra, Ju Jeon, Young, Cilli, Michele, Pistorio, Angela, Mastracci, Luca, Ravazzolo, Roberto, Scholte, Bob, Ronai, Ze'Ev, Galietta, Luis J. V., Pedemonte, Nicoletta, and Cell biology
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Ubiquitin-Protein Ligase ,Glycosylation ,Cystic Fibrosis ,Mutant ,Cystic Fibrosis Transmembrane Conductance Regulator ,medicine.disease_cause ,Cystic fibrosis ,RNA, Small Interfering ,Sequence Deletion ,Allele ,Mice, Knockout ,Mutation ,Multidisciplinary ,biology ,respiratory system ,Cystic fibrosis transmembrane conductance regulator ,Ubiquitin ligase ,DNA-Binding Proteins ,Phenotype ,Gene Knockdown Techniques ,Chloride channel ,RNA Interference ,Human ,congenital, hereditary, and neonatal diseases and abnormalities ,Genotype ,Duodenum ,Ubiquitin-Protein Ligases ,DNA-Binding Protein ,Transgene ,Genetic Association Studie ,Article ,medicine ,Animals ,Humans ,Gene silencing ,Gene Silencing ,Cystic Fibrosi ,Alleles ,Genetic Association Studies ,Animal ,Cell Membrane ,medicine.disease ,Molecular biology ,digestive system diseases ,respiratory tract diseases ,Disease Models, Animal ,Gene Expression Regulation ,Gene Knockdown Technique ,biology.protein ,Cancer research - Abstract
Cystic fibrosis (CF) is caused by mutations in the CFTR chloride channel. Deletion of phenylalanine 508 (F508del), the most frequent CF mutation, impairs CFTR trafficking and gating. F508del-CFTR mistrafficking may be corrected by acting directly on mutant CFTR itself or by modulating expression/activity of CFTR-interacting proteins, that may thus represent potential drug targets. To evaluate possible candidates for F508del-CFTR rescue, we screened a siRNA library targeting known CFTR interactors. Our analysis identified RNF5 as a protein whose inhibition promoted significant F508del-CFTR rescue and displayed an additive effect with the investigational drug VX-809. Significantly, RNF5 loss in F508del-CFTR transgenic animals ameliorated intestinal malabsorption and concomitantly led to an increase in CFTR activity in intestinal epithelial cells. In addition, we found that RNF5 is differentially expressed in human bronchial epithelia from CF vs. control patients. Our results identify RNF5 as a target for therapeutic modalities to antagonize mutant CFTR proteins.
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- 2015
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34. Fabrication, Mercury Intrusion Porosimetry Characterization and In Vitro Qualitative Analysis of Biocompatibility of Various Porosities Polycaprolactone Scaffolds
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Tania Limongi, Bruno Torre, Enzo Di Fabrizio, Luca Tirinato, Gobind Das, Manola Moretti, Hua Tan, Andrea Falqui, Ebtihaj M Bukhari, Marco Allione, Monica Marini, and Andrea Giugni
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Scaffold ,Fabrication ,Materials science ,Biocompatibility ,Scanning electron microscope ,technology, industry, and agriculture ,porous scaffolds ,equipment and supplies ,chemistry.chemical_compound ,biocompatibility, porous scaffolds, fibroblasts ,biocompatibility ,Tissue engineering ,Distilled water ,chemistry ,Chemical engineering ,fibroblasts ,Polycaprolactone ,Porosity - Abstract
In order to develop surfaces with improved cell culture biocompatibility, we optimized a solvent-casting and particulate-leaching fabrication technique to create porous three-dimensional polycaprolactone scaffolds. These biocompatible porous surfaces were realized by means of NaCl particles as porogen; salt leaching by immersion in distilled water created porosity and pore interconnectivity in the material. Scanning electron microscopy and mercury intrusion porosimetry were used for the measurement of porosity, pore size distribution, permeability and compressibility. To evaluate scaffold biocompatibility, fibroblasts were cultured on the porous surfaces and confocal immunofluorescence characterization indicated that they were effective for in vitro cell culture and practical tissue engineering applications.
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- 2015
35. The structure of DNA by direct imaging
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Manola Moretti, Marco Allione, Francesco Gentile, Tania Limongi, Luca Tirinato, Sergei Lopatin, Monica Marini, Andrea Falqui, Alessandro Genovese, Gobind Das, Patrizio Candeloro, Bruno Torre, Enzo Di Fabrizio, Andrea Giugni, Marini, Monica, Falqui, Andrea, Moretti, Manola, Limongi, Tania, Allione, Marco, Genovese, Alessandro, Lopatin, Sergei, Tirinato, Luca, Das, Gobind, Torre, Bruno, Giugni, Andrea, Gentile, Francesco, Candeloro, Patrizio, and Di Fabrizio, Enzo
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Diffraction ,HRTEM ,Computer science ,education ,Nanotechnology ,Biomaterials ,A-DNA ,High-resolution transmission electron microscopy ,health care economics and organizations ,Research Articles ,chemistry.chemical_classification ,Multidisciplinary ,Biomolecule ,Resolution (electron density) ,direct imaging ,superhydrophobic surfaces ,SciAdv r-articles ,structural study ,Single Molecule Imaging ,Reciprocal lattice ,chemistry ,single molecule imaging ,Biological system ,Fiber diffraction ,Research Article - Abstract
The DNA helix and its internal structures were directly imaged; characteristic lengths and inner components were measured and reported., The structure of DNA was determined in 1953 by x-ray fiber diffraction. Several attempts have been made to obtain a direct image of DNA with alternative techniques. The direct image is intended to allow a quantitative evaluation of all relevant characteristic lengths present in a molecule. A direct image of DNA, which is different from diffraction in the reciprocal space, is difficult to obtain for two main reasons: the intrinsic very low contrast of the elements that form the molecule and the difficulty of preparing the sample while preserving its pristine shape and size. We show that through a preparation procedure compatible with the DNA physiological conditions, a direct image of a single suspended DNA molecule can be obtained. In the image, all relevant lengths of A-form DNA are measurable. A high-resolution transmission electron microscope that operates at 80 keV with an ultimate resolution of 1.5 Å was used for this experiment. Direct imaging of a single molecule can be used as a method to address biological problems that require knowledge at the single-molecule level, given that the average information obtained by x-ray diffraction of crystals or fibers is not sufficient for detailed structure determination, or when crystals cannot be obtained from biological molecules or are not sufficient in understanding multiple protein configurations.
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- 2015
36. Plasmon resonance tuning using DNA origami actuation
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Giuseppe Firrao, Denys Naumenko, Marco Lazzarino, Luca Piantanida, Ljiljana Fruk, Dennis M. Bauer, Emanuela Torelli, and Monica Marini
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Materials Chemistry2506 Metals and Alloys ,Materials science ,Nanotechnology ,Biosensing Techniques ,Catalysis ,Coatings and Films ,Resonance shift ,Electronic ,Materials Chemistry ,DNA origami ,Chemistry (all) ,Ceramics and Composites ,Electronic, Optical and Magnetic Materials ,Surfaces, Coatings and Films ,2506 ,Optical and Magnetic Materials ,Surface plasmon resonance ,Base Sequence ,DNA–DNA hybridization ,Metals and Alloys ,DNA ,General Chemistry ,Surface Plasmon Resonance ,Surfaces ,Plasmon resonance tuning using DNA origami actuation ,Colloidal gold ,Nucleic Acid Conformation ,DNA Probes - Abstract
A strategy for an innovative, continuous and reversible LSPR tuning using DNA origami actuation to modulate the nanometric separation of two gold nanoparticles has been developed. The actuation mechanism is based on DNA hybridization, in particular three different DNA sequences were shown to induce resonance shift of up to 6 nm.
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- 2015
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37. Development of the olfactory epithelium and Nasal Glands in TMEM16A-/-and TMEM16A+/ +Mice
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Luis J. V. Galietta, Devendra Kumar Maurya, Tiago Henriques, Brian D. Harfe, Monica Marini, Jason R. Rock, Anna Menini, Nicoletta Pedemonte, Maurya, Devendra Kumar, Henriques, Tiago, Marini, Monica, Pedemonte, Nicoletta, Galietta, Luis J. V., Rock, Jason R., Harfe, Brian D., and Menini, Anna Menini
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Pathology ,medicine.medical_specialty ,Cell- och molekylärbiologi ,Chloride Channel ,lcsh:Medicine ,Mucous membrane of nose ,Settore BIO/09 - Fisiologia ,Olfactory Receptor Neurons ,ANO1 ,Olfactory mucosa ,Mice ,Olfactory Mucosa ,Chloride Channels ,Pregnancy ,medicine ,Animals ,lcsh:Science ,Anoctamin-1 ,Mice, Knockout ,Multidisciplinary ,Microscopy, Confocal ,Biochemistry, Genetics and Molecular Biology (all) ,biology ,Microvilli ,Animal ,Keratin-8 ,lcsh:R ,Olfactory Receptor Neuron ,Nasal glands ,Embryo, Mammalian ,Immunohistochemistry ,Epithelium ,Cell biology ,Nasal Mucosa ,medicine.anatomical_structure ,Ki-67 Antigen ,Agricultural and Biological Sciences (all) ,biology.protein ,Respiratory epithelium ,lcsh:Q ,Female ,Olfactory marker protein ,Olfactory epithelium ,Cell and Molecular Biology ,Research Article - Abstract
TMEM16A/ANO1 is a calcium-activated chloride channel expressed in several types of epithelia and involved in various physiological processes, including proliferation and development. During mouse embryonic development, the expression of TMEM16A in the olfactory epithelium is dynamic. TMEM16A is expressed at the apical surface of the entire olfactory epithelium at embryonic day E12.5 while from E16.5 its expression is restricted to a region near the transition zone with the respiratory epithelium. To investigate whether TMEM16A plays a role in the development of the mouse olfactory epithelium, we obtained the first immunohistochemistry study comparing the morphological properties of the olfactory epithelium and nasal glands in TMEM16A-/- and TMEM16A+/+ littermate mice. A comparison between the expression of the olfactory marker protein and adenylyl cyclase III shows that genetic ablation of TMEM16A did not seem to affect the maturation of olfactory sensory neurons and their ciliary layer. As TMEM16A is expressed at the apical part of supporting cells and in their microvilli, we used ezrin and cytokeratin 8 as markers of microvilli and cell body of supporting cells, respectively, and found that morphology and development of supporting cells were similar in TMEM16A-/- and TMEM16A+/+ littermate mice. The average number of supporting cells, olfactory sensory neurons, horizontal and globose basal cells were not significantly different in the two types of mice. Moreover, we also observed that the morphology of Bowman’s glands, nasal septal glands and lateral nasal glands did not change in the absence of TMEM16A. Our results indicate that the development of mouse olfactory epithelium and nasal glands does not seem to be affected by the genetic ablation of TMEM16A.
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- 2015
38. Novel Plasmonic Probes and Smart Superhydrophobic Devices, New Tools for Forthcoming Spectroscopies at the Nanoscale
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Remo Proietti Zaccaria, Andrea Falqui, Marco Allione, Luca Tirinato, Maria Laura Coluccio, Andrea Giugni, Raffaella Raimondo, Enzo Di Fabrizio, Marco Francardi, Patrizio Candeloro, Bruno Torre, Monica Marini, Francesco Gentile, Tania Limongi, Gobind Das, Gerardo Perozziello, Di Bartolo, Baldassare, Collins, John, Silvestri, Luciano, Giugni, Andrea, Torre, Bruno, Allione, Marco, Gentile, Francesco, Candeloro, Patrizio, Coluccio, Maria Laura, Perozziello, Gerardo, Limongi, Tania, Marini, Monica, Raimondo, Raffaella, Tirinato, Luca, Francardi, Marco, Das, Gobind, Proietti Zaccaria, Remo, Falqui, Andrea, and Di Fabrizio, Enzo
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Engineering ,Superhydrophobicity ,business.industry ,Nanotechnology ,Nano structured devices ,Plasmonic ,Surface plasmon polariton ,Chemical sensitivity ,DNA imaging ,Nanometre ,Hot electrons imaging ,business ,Nanoscopic scale ,Plasmon - Abstract
In this work we review novel strategies and new physical effects to achieve compositional and structural recognition at single molecule level. This chapter is divided in two main parts. The first one introduces the strategies currently adopted to investigate matter at few molecules level. Exploiting the capability of surface plasmon polaritons to deliver optical excitation at nanoscale, we introduce a technique relying on a new transport phenomenon with chemical sensitivity and nanometer spatial resolution. The second part describes how micro and nanostructured superhydrofobic textures can concentrate and localize a small number of molecules into a well-defined region, even when only an extremely diluted solution is available. Several applications of these devices as micro- and nano-systems for high-resolution imaging techniques, cell cultures and tissue engineering applications are also discussed.
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- 2015
39. Confirmation of CLIM2/LMX1B interaction by yeast two-hybrid screening and analysis of its involvement in nail-patella syndrome
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Monica Marini, Roberto Ravazzolo, Marco Di Duca, Nine V A M Knoers, Roberto Cusano, Ernie M H F Bongers, and Marco Seri
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Male ,DNA Mutational Analysis ,LIM-Homeodomain Proteins ,Biology ,medicine.disease_cause ,Bioinformatics ,Nephropathy ,Nail-Patella Syndrome ,Two-Hybrid System Techniques ,Genetics ,medicine ,Humans ,Coding region ,Allele ,Genotyping ,Gene ,Nail patella syndrome ,Homeodomain Proteins ,Mutation ,Polymorphism, Genetic ,General Medicine ,LIM Domain Proteins ,medicine.disease ,Phenotype ,Pedigree ,DNA-Binding Proteins ,Genetic defects of metabolism [UMCN 5.1] ,Female ,Transcription Factors - Abstract
Item does not contain fulltext Nail-patella syndrome (NPS), an autosomal dominant disorder characterized by nail dysplasia, absent or hypoplastic patellae, iliac horns, and often associated with nephropathy and, less frequently, with open angle glaucoma, is caused by mutations in the LMX1B gene. Inter-familial and intra-familial phenotypic variability raises the question whether modifier genes can be identified to explain differences in the expression and severity of clinical features of NPS. Genes encoding proteins that interact with the LMX1B protein are good candidates and, therefore, methods to search for interactions can be used to this purpose. By the yeast two-hybrid screening we detected the CLIM2 gene as a LMX1B interactor, confirming previous reports which described the same interaction by biochemical methods. Sequencing of the CLIM2 coding region in seven NPS cases in which no LMX1B mutation had been found, did not detect any molecular variant in these patients. Moreover, by genotyping a polymorphic dinucleotide repeat close to the CLIM2 gene in affected members of a large Dutch NPS family with high incidence of nephropathy, we were unable to find a correlation between the presence of a specific allele and the expression of nephropathy. In conclusion, although the results of this study could not provide any proof of CLIM2 involvement in the pathogenesis of NPS or in determination of the clinical phenotype, we suggest that the CLIM2 gene can be considered as a good candidate for further studies on normal and disturbed kidney development associated with NPS or other hereditary glomerulopathies.
- Published
- 2003
40. Meier-Gorlin syndrome (ear-patella-short stature syndrome) in an Italian patient: Clinical evaluation and analysis of possible candidate genes
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Alberto Gaiero, Roberta Mulas, Amnon Cohen, Graziella Fichera, Maria Baffico, Marco Seri, Gianni Camera, and Monica Marini
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Male ,Candidate gene ,medicine.medical_specialty ,Adolescent ,Gauche effect ,LIM-Homeodomain Proteins ,Basal Cell Nevus Syndrome ,Dwarfism ,Bone Morphogenetic Protein 5 ,Short stature ,Short Stature Homeobox Protein ,Internal medicine ,Humans ,Medicine ,Abnormalities, Multiple ,Polymorphism, Single-Stranded Conformational ,Genetics (clinical) ,Homeodomain Proteins ,Fetal Growth Retardation ,biology ,business.industry ,Pinna ,Microtia ,Tunica vaginalis ,Patella ,Syndrome ,Anatomy ,musculoskeletal system ,biology.organism_classification ,medicine.disease ,Endocrinology ,medicine.anatomical_structure ,Italy ,Bone Morphogenetic Proteins ,medicine.symptom ,business ,Transcription Factors - Abstract
We report on an Italian boy with the Meier-Gorlin syndrome (ear-patella-short stature syndrome). This rare autosomal recessive disorder comprises the triad of microtia, absent patellae, and growth retardation with prenatal onset. The patient had also an acute torsion of his left spermatic cord, a condition related to a congenital defect of the tunica vaginalis. Because this syndrome had been suggested as the human equivalent of the short ear mouse [Lacombe et al., 1994: Ann. Genet. 37:184-191], a mutation analysis of the BMP5 gene was performed and found normal. The LMX1B and the SHOX genes were also evaluated considering the absent patellae and short stature, respectively, and were found normal as well.
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- 2002
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41. A DNA origami nanorobot controlled by nucleic acid hybridization
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Alice Scarpellini, Emanuela Torelli, Giuseppe Firrao, Monica Marini, Cesare Polano, Marco Lazzarino, Luca Piantanida, and Sabrina Palmano
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Luminescence ,Deoxyribozyme ,Nanotechnology ,Biosensing Techniques ,G-quadruplex ,Microscopy, Atomic Force ,DNAzyme-based sensors ,Biomaterials ,Nucleic acid thermodynamics ,Drug Delivery Systems ,Microscopy, Electron, Transmission ,Fluorescence Resonance Energy Transfer ,DNA origami ,General Materials Science ,Horseradish Peroxidase ,Chemistry ,nanorobots ,Nucleic Acid Hybridization ,General Chemistry ,DNA ,DNA, Catalytic ,Robotics ,Nanostructures ,G-Quadruplexes ,Förster resonance energy transfer ,hemin/G-quadruplex ,Nucleic acid ,Hemin ,Nanorobotics ,Colorimetry ,switchable nanodevices ,Biosensor ,Biotechnology - Abstract
A prototype for a DNA origami nanorobot is designed, produced, and tested. The cylindrical nanorobot (diameter of 14 nm and length of 48 nm) with a switchable flap, is able to respond to an external stimulus and reacts by a physical switch from a disarmed to an armed configuration able to deliver a cellular compatible message. In the tested design the robot weapon is a nucleic acid fully contained in the inner of the tube and linked to a single point of the internal face of the flap. Upon actuation the nanorobot moves the flap extracting the nucleic acid that assembles into a hemin/G-quadruplex horseradish peroxidase mimicking DNAzyme catalyzing a colorimetric reaction or chemiluminescence generation. The actuation switch is triggered by an external nucleic acid (target) that interacts with a complementary nucleic acid that is beard externally by the nanorobot (probe). Hybridization of probe and target produces a localized structural change that results in flap opening. The flap movement is studied on a two-dimensional prototype origami using Förster resonance energy transfer and is shown to be triggered by a variety of targets, including natural RNAs. The nanorobot has potential for in vivo biosensing and intelligent delivery of biological activators. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
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- 2014
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42. Raman spectroscopy for detection of stretched DNAs on superhydrophobic surfaces
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Tania Limongi, E. Di Fabrizio, Stefania Santoriello, Francesco Gentile, Alice Scarpellini, R. La Rocca, Gobind Das, Monica Marini, Marini, M., Das, G., La Rocca, R., Gentile, Francesco, Limongi, T., Santoriello, S., Scarpellini, A., and Di Fabrizio, E.
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microPillars ,Nucleic acids ,Raman spectroscopy ,Superhydrophobicity ,Suspended ,Materials science ,Atomic and Molecular Physics, and Optic ,Surfaces, Coatings and Film ,Nanotechnology ,symbols.namesake ,Molecule ,Electrical and Electronic Engineering ,Spectroscopy ,chemistry.chemical_classification ,Double strand ,microPillar ,Biomolecule ,Drop (liquid) ,Electronic, Optical and Magnetic Material ,Condensed Matter Physics ,Atomic and Molecular Physics, and Optics ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,chemistry ,Nucleic acid ,symbols ,Molecular Density ,Single strand - Abstract
Graphical abstractDisplay Omitted Superhydrophobic surface constituted with micropillars.Single strand DNA and dsDNA spectroscopic analysis.Low concentrated biomolecules Raman analysis.Non-enhanced Raman spectroscopy for DNAs molecules.Distinction of ss and dsDNAs via Raman spectroscopy. A novel approach for the study of low concentrated DNAs (60pM) using microRaman spectroscopy is reported. A superhydrophobic substrate with array of microPillars is fabricated over which the sample was drop casted. The substrate concentrates the molecules in a very small area with higher molecular density, enabling to carry out the microRaman measurements. Two different DNAs (single strand and double strand) were used to investigate through Raman technique. A spectral Raman difference was found to distinguish the ssDNA and dsDNAs. The approach can be of interest for a wide variety of applications ranging from biological materials interactions characterization to the biomedical field.
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- 2014
43. Cardiac Specific Knockout of P65 Mice Resist to Cardiac Ischemia- Reperfusion Injury
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Monica Marini, Marco Allione, Di Fabrizio E, Tania Limongi, and Andrea Falqui
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Contact angle ,chemistry.chemical_compound ,Ordinate ,chemistry ,Silicon ,DNA replication ,chemistry.chemical_element ,Nanotechnology ,General Medicine ,Biology ,Bioinformatics ,Functional genomics ,DNA - Abstract
Superhydrophobicity refers to surfaces on which drops assume a quasi-spherical shape and a high contact angle (more than 150°). This well-known phenomenon occurs in nature and we can take advantage of this principle fabricating bio-inspired superhydrophobic surfaces constituted of ordinate arrays of silicon micro-pillars.
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- 2014
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44. Superhydrophobic Devices Molecular Detection
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Lorenzo Ferrara, Ermanno Miele, Tania Limongi, Enzo Di Fabrizio, Francesco Gentile, Gobind Das, Raffaella Raimondo, Manola Moretti, Angelo Accardo, and Monica Marini
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Contact angle ,Computer science ,law ,Scale (chemistry) ,Nanotechnology ,Photolithography ,Biosensor ,law.invention - Abstract
Recent advances in the single-molecule detection and manipulation provided unexpected solutions for the understanding of the physio-pathological behavior of individual biological macromolecules. Modern techniques of patterning at the micro- and nanometer scale combined with chemical treatments are being used to create surfaces that stretch the hydrophobic behavior to the limit. The ability to create surfaces with high static water contact angles (usually greater than 150°) is essential for a variety of applications, ranging from the development of biosensors to the implementation of sensitive and reliable single-molecule collection and sample preparation methods. Thus, superhydrophobic devices could be considered as nano-biotechnological single-molecule detection tools that can be applied to a wide range of high-resolution studies. To outline the paper, single-molecule detection topics and theoretical principles of superhydrophobicity are first introduced. A comprehensive overview is then given, describing how different types of devices with superhydrophobic surfaces are realized. Finally, the usefulness of the presented devices for a wide range of applications and the concluding comments are proposed.
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- 2014
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45. Identification of TBX5 mutations in a series of 94 patients with Tetralogy of Fallot
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Phil Barnett, Bruno Dallapiccola, Cornelis J. Boogerd, Monica Marini, Pietro Sirleto, Sonia B. Albanese, Margherita Lerone, Alex V. Postma, Monica Pelegrini, Roberto Ravazzolo, Antonella Santilli, Gianluca Trocchio, Anwar Baban, Giacomo Pongiglione, Maria Cristina Digilio, Amsterdam Cardiovascular Sciences, Medical Biology, and Other departments
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Male ,medicine.medical_specialty ,Mutation, Missense ,Biology ,medicine.disease_cause ,Polymerase Chain Reaction ,Bilateral triphalangeal thumbs ,Atrial septal defects ,Exon ,Internal medicine ,Genetics ,medicine ,Humans ,Immunoprecipitation ,cardiovascular diseases ,Luciferases ,Genetics (clinical) ,DNA Primers ,Tetralogy of Fallot ,Homeodomain Proteins ,Mutation ,GATA4 ,Sequence Analysis, DNA ,medicine.disease ,Phenotype ,GATA4 Transcription Factor ,Pedigree ,Italy ,Homeobox Protein Nkx-2.5 ,cardiovascular system ,Cardiology ,Female ,T-Box Domain Proteins ,Atrioventricular block ,Transcription Factors - Abstract
Tetralogy of Fallot (TOF) (OMIM #187500) is the most frequent conotruncal congenital heart defect (CHD) with a range of intra- and extracardiac phenotypes. TBX5 is a transcription factor with well-defined roles in heart and forelimb development, and mutations in TBX5 are associated with Holt-Oram syndrome (HOS) (OMIM#142900). Here we report on the screening of 94 TOF patients for mutations in TBX5, NKX2.5 and GATA4 genes. We identified two heterozygous mutations in TBX5. One mutation was detected in a Moroccan patient with TOF, a large ostium secundum atrial septal defect and complete atrioventricular block, and features of HOS including bilateral triphalangeal thumbs and fifth finger clinodactyly. This patient carried a previously described de novo, stop codon mutation (p.R279X) located in exon 8 causing a premature truncated protein. In a second patient from Italy with TOF, ostium secundum atrial septal defect and progressive arrhythmic changes on ECG, we identified a maternally inherited novel mutation in exon 9, which caused a substitution of a serine with a leucine at amino acid position 372 (p.S372L, c.1115C>T). The mother's clinical evaluation demonstrated frequent ventricular extrasystoles and an atrial septal aneurysm. Physical examination and radiographs of the hands showed no apparent skeletal defects in either child or mother. Molecular evaluation of the p.S372L mutation demonstrated a gain-of-function phenotype. We also review the literature on the co-occurrence of TOF and HOS, highlighting its relevance. This is the first systematic screening for TBX5 mutations in TOF patients which detected mutations in two of 94 (2.1%) patients. © 2014 Wiley Periodicals, Inc
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- 2014
46. From single molecule to suspended DNA nanowires
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Marco Francardi, Andrea Falqui, Monica Marini, and Enzo Di Fabrizio
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chemistry.chemical_compound ,chemistry ,Materials Science(all) ,Mechanics of Materials ,Mechanical Engineering ,Nanowire ,General Materials Science ,Nanotechnology ,Condensed Matter Physics ,DNA - Abstract
From single molecule to suspended DNA nanowires How DNA can be suspended in ordered nanometric bundles Andrea Falqui, Monica Marini, Marco Francardi and Enzo di Fabrizio 1 Biological and Environmental Sciences and Engineering Division, King Abdullah University for Science and Technology, Thuwal 23955-6900, Saudi Arabia 2 Physical Sciences and Engineering Division, King Abdullah University for Science and Technology, Thuwal 23955-6900, Saudi Arabia * Corresponding author: Falqui, A. (andrea.falqui@kaust.edu.sa)
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- 2015
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47. Holoprosencephaly: report of four cases and genotype-phenotype correlations
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Francesca Lami, Antonio Percesepe, Lorenzo Iughetti, Diana Carli, Viola Alesi, Paola Ferrari, and Monica Marini
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Male ,Biology ,Ultrasonography, Prenatal ,Chromosomes ,Eugenic ,Holoprosencephaly ,Genetics ,medicine ,Humans ,Prenatal ,7q36 deletion ,Currarino syndrome ,holoprosencephaly ,SHH gene mutation ,Abortion, Eugenic ,Chromosomes, Human, Pair 7 ,Comparative Genomic Hybridization ,Female ,Genetic Association Studies ,Hedgehog Proteins ,Infant, Newborn ,Sequence Deletion ,Genotype-Phenotype Correlations ,Ultrasonography ,Abortion ,Sonic hedgehog gene ,Infant ,Sonic hedgehog gene [Holoprosencephaly] ,Newborn ,medicine.disease ,Infant newborn ,Sonic Hedgehog Gene ,Pair 7 ,[Holoprosencephaly] ,Human ,Comparative genomic hybridization - Published
- 2013
48. RNF5, DAB2 and Friends: Novel Drug Targets for Cystic Fibrosis
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Valeria Tomati, Monica Marini, Nicoletta Pedemonte, Emanuela Pesce, and Elvira Sondo
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0301 basic medicine ,Drug ,Cystic Fibrosis ,Ubiquitin-Protein Ligases ,media_common.quotation_subject ,Druggability ,Regulator ,Gating ,Cystic fibrosis ,03 medical and health sciences ,Drug Discovery ,medicine ,Animals ,Humans ,Internalization ,Adaptor Proteins, Signal Transducing ,media_common ,Pharmacology ,biology ,Tumor Suppressor Proteins ,medicine.disease ,Cell biology ,DNA-Binding Proteins ,030104 developmental biology ,Proteostasis ,Chaperone (protein) ,biology.protein ,Apoptosis Regulatory Proteins - Abstract
Background Deletion of phenylalanine 508 is the most frequent mutation causing cystic fibrosis. It causes multiple defects: 1) misfolding of the protein causing retention at the ER (processing defect); 2) reduced channel activity (gating defect); 3) reduced plasma membrane residency time due to increased internalization rate and defective recycling. Methods Druggability of F508del-CFTR was demonstrated by several studies. Correctors are molecules able to improve maturation and trafficking to the membrane of F508del- CFTR. Correctors could act as pharmacological chaperones or as proteostasis regulators. Pharmacological chaperones act directly on mutant CFTR, while proteostasis regulators modify the proteostasis environment leading to beneficial effects on CFTR maturation. Results The use of a single compound is not sufficient to promote a therapeutically relevant F508del-CFTR rescue. Drug therapy for CF will require combinations of correctors exploiting different mechanisms of action, i.e. pharmacological chaperones combined together or with a proteostasis regulator. Conclusion Development of more effective CF drugs could therefore rely on a better understanding of the molecular events underlying CFTR processing/degradation. This review will focus on most promising pathways and related targets for the development of novel CF pharmacotherapies.
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- 2016
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49. Across-sectional survey on benzodiazepine use among older people in an Italian region
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Francesco Donato, Fabio Samani, Monica Marini, Giampiero Mazzaglia, Giuseppe Leggieri, Matteo Balestrieri, and Umberto Gelatti
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older people ,Benzodiazepine ,lcsh:Public aspects of medicine ,lcsh:R ,cross-sectional study ,anxiolytic ,hypnotic ,DOAJ:Public Health ,lcsh:Medicine ,lcsh:RA1-1270 ,DOAJ:Health Sciences - Abstract
Background. Benzodiazepines are among the most commonly prescribed drugs in Italy and they are often used inappropriately according to guidelines for their rational use.The aim of this study was to investigate the prevalence and pattern of use of benzodiazepine amongst the general population aged 65-84 years in the Friuli-Venezia Giulia Region, in North-East Italy. Methods. A total of 40 general practitioners participated in the study. Two data sources were used in the research. The first was the Health Search Database, the second was a short questionnaire administered by the general practitioners to the 65 to 84 year old patients attending their surgeries for any reason during the study period. Data on the use of benzodiazepines between 1st February and 31st July 2001 were extracted from both the Health Search Database using drug prescriptions and the questionnaires.Results. Of the 10,468 patients aged 65-84 years with complete demographical data in the general practitioners’ patient lists, 2,369 subjects used benzodiazepines, hypnotics and over the counter drugs. Overall prevalence of benzodiazepine use was 21.5% (95% confidence interval: 19.8-23.1%). Of the benzodiazepine users, 66.9% consumed a short-intermediate half-life and 33.1% a long half-life benzodiazepine. Most patients took benzodiazepines at night (68.2%), less frequently in the daytime and at night (23.7%), or in the daytime only (8.1%). Most users (89.2%) said they had been taking benzodiazepine for years.Conclusions. Benzodiazepine use was associated with patient characteristics, such as being female, using analgesics or antidepressants and the presence of a chronic disease especially cancer or chronic heart failure.
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- 2012
50. Canker and dieback on Platanus x acerifolia caused by Diaporthe scabra
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Monica Marini, F. M. Grasso, Alessandro Vitale, G. Granata, and Giuseppe Firrao
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Canker ,Ecology ,biology ,Inoculation ,fungi ,Forestry ,Fungus ,biology.organism_classification ,medicine.disease ,Sunflower ,Conidium ,Intergenic region ,Phomopsis ,Botany ,medicine ,Pycnidium - Abstract
Summary Cankers and dieback on London plane caused by Diaporthe scabra have been observed in urban plantings in Catania, Italy. Symptoms were delayed spring flush, trunk cankers, small chlorotic leaves associated with dead terminal or lateral branches and an early defoliation. Isolations from infected wood on PDA led to the isolation of the anamorph Phomopsis scabra with α-conidia production. The infected wood placed in a moist chamber developed pycnidia with α and β conidia and perithecia of the teleomorph D. scabra. Sequence analysis of the internal transcribed spacers ITS1 and ITS2, the ribosomal intragenic spacer beta-tubulin 1 and beta-tubulin 2 genes, congruently indicated that the D. scabra isolate is phylogenetically related to two strains of D. helianthi isolated in Italy from sunflower and to strains of D. eres. Inoculations on young plants of London plane growing in pots confirmed the pathogenicity of the isolated fungus. To our knowledge, this is the first report of the disease in Italy.
- Published
- 2012
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