29 results on '"Mehmet Nail Nasir"'
Search Results
2. Structural basis for plant plasma membrane protein dynamics and organization into functional nanodomains
- Author
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Julien Gronnier, Jean-Marc Crowet, Birgit Habenstein, Mehmet Nail Nasir, Vincent Bayle, Eric Hosy, Matthieu Pierre Platre, Paul Gouguet, Sylvain Raffaele, Denis Martinez, Axelle Grelard, Antoine Loquet, Françoise Simon-Plas, Patricia Gerbeau-Pissot, Christophe Der, Emmanuelle M Bayer, Yvon Jaillais, Magali Deleu, Véronique Germain, Laurence Lins, and Sébastien Mongrand
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Nicotiana benthamiana ,Membrane domain ,targeting ,phospholipids ,sterols ,membrane structure ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Plasma Membrane is the primary structure for adjusting to ever changing conditions. PM sub-compartmentalization in domains is thought to orchestrate signaling. Yet, mechanisms governing membrane organization are mostly uncharacterized. The plant-specific REMORINs are proteins regulating hormonal crosstalk and host invasion. REMs are the best-characterized nanodomain markers via an uncharacterized moiety called REMORIN C-terminal Anchor. By coupling biophysical methods, super-resolution microscopy and physiology, we decipher an original mechanism regulating the dynamic and organization of nanodomains. We showed that targeting of REMORINis independent of the COP-II-dependent secretory pathway and mediated by PI4P and sterol. REM-CA is an unconventional lipid-binding motif that confers nanodomain organization. Analyzes of REM-CA mutants by single particle tracking demonstrate that mobility and supramolecular organization are critical for immunity. This study provides a unique mechanistic insight into how the tight control of spatial segregation is critical in the definition of PM domain necessary to support biological function.
- Published
- 2017
- Full Text
- View/download PDF
3. Bolaamphiphiles Derived from Alkenyl L-Rhamnosides and Alkenyl D-Xylosides: Importance of the Hydrophilic Head
- Author
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Sandrine Bouquillon, Vincent Legrand, Nadia Klai, Magali Deleu, Mehmet Nail Nasir, and Sylvain Gatard
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rhamnose ,glycosylation ,metathesis ,surfactant ,bolaform ,interfacial properties ,Organic chemistry ,QD241-441 - Abstract
The two step synthesis of a new bolaamphiphile derived from alkenyl l-rhamnosides was described. The general synthetic strategy of bolaamphiphiles derived from l-rhamnose was based on a previous work describing the synthesis of bolaamphiphiles derived from d-xylose. The conformational properties of this new compound were investigated by FTIR spectroscopy in an aqueous film in order to obtain a reference for further studies about the membrane-interacting properties. Moreover, the surface activity of this new bolaamphiphile was analyzed by Langmuir balance technology and was compared with that of the analogous bolaamphiphile derived from alkenyl D-xylosides. The findings indicate that the rhamnoside-based bolaform has an increased surface activity and a better ability to form aggregates than xyloside-based one.
- Published
- 2013
- Full Text
- View/download PDF
4. Insight into the Self-Assembling Properties of Peptergents: A Molecular Dynamics Simulation Study
- Author
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Jean Marc Crowet, Mehmet Nail Nasir, Nicolas Dony, Antoine Deschamps, Vincent Stroobant, Pierre Morsomme, Magali Deleu, Patrice Soumillion, and Laurence Lins
- Subjects
peptide ,self-assembly ,molecular dynamic simulations ,peptergent ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
By manipulating the various physicochemical properties of amino acids, the design of peptides with specific self-assembling properties has been emerging for more than a decade. In this context, short peptides possessing detergent properties (so-called “peptergents”) have been developed to self-assemble into well-ordered nanostructures that can stabilize membrane proteins for crystallization. In this study, the peptide with “peptergency” properties, called ADA8 and extensively described by Tao et al., is studied by molecular dynamic simulations for its self-assembling properties in different conditions. In water, it spontaneously forms beta sheets with a β barrel-like structure. We next simulated the interaction of this peptide with a membrane protein, the bacteriorhodopsin, in the presence or absence of a micelle of dodecylphosphocholine. According to the literature, the peptergent ADA8 is thought to generate a belt of β structures around the hydrophobic helical domain that could help stabilize purified membrane proteins. Molecular dynamic simulations are here used to image this mechanism and provide further molecular details for the replacement of detergent molecules around the protein. In addition, we generalized this behavior by designing an amphipathic peptide with beta propensity, which was called ABZ12. Both peptides are able to surround the membrane protein and displace surfactant molecules. To our best knowledge, this is the first molecular mechanism proposed for “peptergency”.
- Published
- 2018
- Full Text
- View/download PDF
5. Linoleic and linolenic acid hydroperoxides interact differentially with biomimetic plant membranes in a lipid specific manner
- Author
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Magali Deleu, Laurence Lins, Estelle Deboever, Manuel Dauchez, Marie-Laure Fauconnier, Mehmet Nail Nasir, Marc Ongena, Haissam Jijakli, Jean-Marc Crowet, Laboratory of Molecular Biophysics at Interfaces (LBMI), and Gembloux Agro-Bio Tech, University of Liege
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Lipid Peroxides ,Cell signaling ,Linolenic Acids ,Linolenic acid ,Chemical structure ,Membrane lipids ,01 natural sciences ,Hydrophobic effect ,03 medical and health sciences ,Colloid and Surface Chemistry ,Biomimetics ,0103 physical sciences ,Plant defense against herbivory ,Physical and Theoretical Chemistry ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,0303 health sciences ,010304 chemical physics ,Chemistry ,Cell Membrane ,fungi ,food and beverages ,Surfaces and Interfaces ,General Medicine ,Plants ,Plant cell ,[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] ,[SDV.BBM.BP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biophysics ,Membrane ,Biochemistry ,lipids (amino acids, peptides, and proteins) ,Biotechnology - Abstract
Linoleic and linolenic acid hydroperoxides (HPOs) constitute key intermediate oxylipins playing an important role as signaling molecules during plant defense processes in response to biotic or abiotic stress. They have also been demonstrated in vitro as antimicrobial agents against plant fungi and bacteria. To reach the phytopathogens in vivo, the HPOs biosynthesized in the plant cells must cross the plant plasma membrane (PPM) where they can also interact with plasma membrane lipids and have an effect on their organization. In the present study, we have investigated the interaction properties of HPOs with PPM at a molecular level using biophysical tools combining in vitro and in silico approaches and using plant biomimetic lipid systems. Our results have shown that HPOs are able to interact with PPM lipids and perturb their lateral organization. Glucosylceramide (GluCer) is a privileged partner, sitosterol lessens their binding and the presence of both GluCer and sitosterol further reduces their interaction. Hydrophobic effect and polar interactions are involved in the binding. The chemical structure of HPOs influences their affinity for PPM lipids. The presence of three double bonds in the HPO molecule gives rise to a higher affinity comparatively to two double bonds, which can be explained by their differential interaction with the lipid polar headgroups.
- Published
- 2019
6. Effect of xylose on the structural and physicochemical properties of peanut isolated protein based films
- Author
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Hongzhi Liu, Qiang Wang, Lin Weijing, Mehmet Nail Nasir, Magali Deleu, Hu Hui, Liu Li, and Aimin Shi
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Glycosylation ,Chromatography ,Scanning electron microscope ,General Chemical Engineering ,04 agricultural and veterinary sciences ,General Chemistry ,Xylose ,040401 food science ,chemistry.chemical_compound ,Maillard reaction ,symbols.namesake ,0404 agricultural biotechnology ,chemistry ,Ultimate tensile strength ,symbols ,Elongation ,Fourier transform infrared spectroscopy ,Solubility - Abstract
Films based on xylose and peanut protein isolate (PPI) were prepared by solution casting. The effects of xylose content (1%, 2%, 5%, 10%, 20% PPI, w/w) on the structure and mechanical properties of PPI–xylose (PPI–X) film were systematically investigated. The xylose-modified PPI was firstly prepared by crosslinking and modifying of peanut isolated protein with xylose. The degree of glycosylation and surface hydrophobicity significantly increased from 5.6% to 10.9% and from 130.6 to 370.0, respectively, with the increase of the xylose content. Maillard reactions occurring between PPI and xylose were confirmed by Fourier transform infrared spectroscopy. Then the xylose-modified PPI was developed into films. PPI–X films showed markedly increased tensile strength (increased by 77%) and elongation (increased by 67%) and decreased solubility (from 96.6% to 43.4%) compared to PPI films, suggesting that the incorporation of xylose could markedly enhance the mechanical properties and the water resistance of films. This property improvement was correlated to the increased protein surface hydrophobicity and sulfhydryl group content with the addition of xylose. No significant differences were detected among L*, a*, b* colour values of all films (P > 0.05). The scanning electron microscope images of the PPI–X film showed that the addition of xylose up to 10% produced a more homogeneous and denser structure. Finally, the improvement mechanism of the PPI–X film was proposed.
- Published
- 2017
7. Interactions of sugar-based bolaamphiphiles with biomimetic systems of plasma membranes
- Author
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Magali Deleu, Firmin Obounou Akong, Jean-Marc Crowet, Arnaud Haudrechy, Laurence Lins, Mehmet Nail Nasir, Sandrine Bouquillon, Laboratoire de Biophysique Moléculaire aux Interfaces, Université de Liège, Institut de Chimie Moléculaire de Reims - UMR 7312 (ICMR), SFR Condorcet, Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS)-Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS)-SFR CAP Santé (Champagne-Ardenne Picardie Santé), and Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Université de Reims Champagne-Ardenne (URCA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
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Models, Molecular ,Biocompatibility ,Pyridones ,Lipid Bilayers ,Biocompatible Materials ,02 engineering and technology ,010402 general chemistry ,Binding, Competitive ,Rhamnose ,01 natural sciences ,Biochemistry ,Cell membrane ,Glycolipid ,Biomimetics ,Spectroscopy, Fourier Transform Infrared ,medicine ,Furans ,Lipid bilayer ,Sugar ,Binding Sites ,Xylose ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,Chemistry ,Cell Membrane ,General Medicine ,021001 nanoscience & nanotechnology ,Sterol ,0104 chemical sciences ,3. Good health ,Sterols ,Membrane ,medicine.anatomical_structure ,Drug delivery ,Adsorption ,Glycolipids ,0210 nano-technology ,Hydrophobic and Hydrophilic Interactions - Abstract
International audience; Glycolipids constitute a class of molecules with various biological activities. Among them, sugar-based bolaamphiphiles characterized by their biocompatibility, biodegradability and lower toxicity, became interesting for the development of efficient and low cost lipid-based drug delivery systems. Their activity seems to be closely related to their interactions with the lipid components of the plasma membrane of target cells. Despite many works devoted to the chemical synthesis and characterization of sugar-based bolaamphiphiles, their interactions with plasma membrane have not been completely elucidated. In this work, two sugar-based bolaamphiphiles differing only at the level of their sugar residues were chemically synthetized. Their interactions with membranes have been investigated using model membranes containing or not sterol and with in silico approaches. Our findings indicate that the nature of sugar residues has no significant influence for their membrane interacting properties, while the presence of sterol attenuates the interactions of both bolaamphiphiles with the membrane systems. The understanding of this distinct behavior of bolaamphiphiles towards sterol-containing membrane systems could be useful for their applications as drug delivery systems.
- Published
- 2016
8. Insight into the Self-Assembling Properties of Peptergents: A Molecular Dynamics Simulation Study
- Author
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Magali Deleu, Laurence Lins, Jean-Marc Crowet, Antoine Deschamps, Pierre Morsomme, Patrice Soumillion, Mehmet Nail Nasir, Vincent Stroobant, Nicolas Dony, CBMN gembloux, and UCL - SST/LIBST - Louvain Institute of Biomolecular Science and Technology
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0301 basic medicine ,Protein Conformation ,Detergents ,Beta sheet ,Peptide ,Context (language use) ,Molecular Dynamics Simulation ,01 natural sciences ,Micelle ,Catalysis ,Article ,lcsh:Chemistry ,Inorganic Chemistry ,peptergent ,03 medical and health sciences ,Molecular dynamics ,Structure-Activity Relationship ,0103 physical sciences ,Amphiphile ,Physical and Theoretical Chemistry ,Amino Acids ,lcsh:QH301-705.5 ,Molecular Biology ,Spectroscopy ,chemistry.chemical_classification ,010304 chemical physics ,biology ,Chemistry ,Organic Chemistry ,Membrane Proteins ,Water ,Bacteriorhodopsin ,General Medicine ,self-assembly ,[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] ,peptide ,molecular dynamic simulations ,3. Good health ,Computer Science Applications ,030104 developmental biology ,lcsh:Biology (General) ,lcsh:QD1-999 ,Membrane protein ,biology.protein ,Biophysics ,Peptides - Abstract
By manipulating the various physicochemical properties of amino acids, the design of peptides with specific self-assembling properties has been emerging for more than a decade. In this context, short peptides possessing detergent properties (so-called &ldquo, peptergents&rdquo, ) have been developed to self-assemble into well-ordered nanostructures that can stabilize membrane proteins for crystallization. In this study, the peptide with &ldquo, peptergency&rdquo, properties, called ADA8 and extensively described by Tao et al., is studied by molecular dynamic simulations for its self-assembling properties in different conditions. In water, it spontaneously forms beta sheets with a &beta, barrel-like structure. We next simulated the interaction of this peptide with a membrane protein, the bacteriorhodopsin, in the presence or absence of a micelle of dodecylphosphocholine. According to the literature, the peptergent ADA8 is thought to generate a belt of &beta, structures around the hydrophobic helical domain that could help stabilize purified membrane proteins. Molecular dynamic simulations are here used to image this mechanism and provide further molecular details for the replacement of detergent molecules around the protein. In addition, we generalized this behavior by designing an amphipathic peptide with beta propensity, which was called ABZ12. Both peptides are able to surround the membrane protein and displace surfactant molecules. To our best knowledge, this is the first molecular mechanism proposed for &ldquo
- Published
- 2018
9. Complementary biophysical tools to investigate lipid specificity in the interaction between bioactive molecules and the plasma membrane: A review
- Author
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Jean-Marc Crowet, Laurence Lins, Magali Deleu, Mehmet Nail Nasir, Laboratory of Molecular Biophysics at Interfaces (LBMI), and Gembloux Agro-Bio Tech, University of Liege
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Tilted peptide ,Bioactive molecules ,Biophysics ,Biochemistry ,Cell membrane ,Molecular dynamics ,Biobased molecule ,High complexity ,medicine ,ComputingMilieux_MISCELLANEOUS ,chemistry.chemical_classification ,Chemistry ,Drug discovery ,Biomolecule ,Molecular biophysics ,Cell Biology ,[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] ,[SDV.BBM.BP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biophysics ,Lipid-specific interaction ,Cyclic lipopeptide ,medicine.anatomical_structure ,Membrane ,Molecular modeling and dynamics - Abstract
Plasma membranes are complex entities common to all living cells. The basic principle of their organization appears very simple, but they are actually of high complexity and represent very dynamic structures. The interactions between bioactive molecules and lipids are important for numerous processes, from drug bioavailability to viral fusion. The cell membrane is a carefully balanced environment and any change inflicted upon its structure by a bioactive molecule must be considered in conjunction with the overall effect that this may have on the function and integrity of the membrane. Conceptually, understanding the molecular mechanisms by which bioactive molecules interact with cell membranes is of fundamental importance.Lipid specificity is a key factor for the detailed understanding of the penetration and/or activity of lipid-interacting molecules and of mechanisms of some diseases. Further investigation in that way should improve drug discovery and development of membrane-active molecules in many domains such as health, plant protection or microbiology.In this review, we will present complementary biophysical approaches that can give information about lipid specificity at a molecular point of view. Examples of application will be given for different molecule types, from biomolecules to pharmacological drugs. A special emphasis is given to cyclic lipopeptides since they are interesting molecules in the scope of this review by combining a peptidic moiety and a lipidic tail and by exerting their activity via specific interactions with the plasma membrane.
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- 2014
- Full Text
- View/download PDF
10. Differential Interaction of Synthetic Glycolipids with Biomimetic Plasma Membrane Lipids Correlates with the Plant Biological Response
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Katherine Nott, Arnaud Haudrechy, Jean-Marc Crowet, Mehmet Nail Nasir, Laurence Lins, Sandrine Bouquillon, Catherine Sarazin, Marc Ongena, Magali Deleu, Christophe Clément, Sandrine Dhondt-Cordelier, Stéphan Dorey, Marie-Laure Fauconnier, Laboratoire de Biophysique Moléculaire aux Interfaces, Université de Liège, Unité de Recherche Vigne et Vins de Champagne Stress et Environnement - EA 4707 (URVVC), Université de Reims Champagne-Ardenne (URCA)-SFR Condorcet, Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS)-Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS), Institut de Chimie Moléculaire de Reims - UMR 7312 (ICMR), SFR Condorcet, Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS)-Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS)-SFR CAP Santé (Champagne-Ardenne Picardie Santé), Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Université de Reims Champagne-Ardenne (URCA)-Université de Picardie Jules Verne (UPJV)-Université de Reims Champagne-Ardenne (URCA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Génie Enzymatique et Cellulaire (GEC), Université de Technologie de Compiègne (UTC)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS), Plant Biol Unit, and Univ Liege Gembloux Agrobio Tech
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0106 biological sciences ,0301 basic medicine ,Biomimetic membranes ,Membrane lipids ,In silico ,Lipid composition ,Cell ,Lipid Bilayers ,01 natural sciences ,03 medical and health sciences ,Membrane Lipids ,Glycolipid ,Biomimetics ,hemic and lymphatic diseases ,Electrochemistry ,medicine ,General Materials Science ,Spectroscopy ,Amphiphilic molecule ,Chemistry ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,Cell Membrane ,Surfaces and Interfaces ,Condensed Matter Physics ,030104 developmental biology ,medicine.anatomical_structure ,Membrane ,Biochemistry ,lipids (amino acids, peptides, and proteins) ,Glycolipids ,010606 plant biology & botany - Abstract
International audience; Natural and synthetic amphiphilic molecules including lipopeptides, lipopolysaccharides, and glycolipids are able to induce defense mechanisms in plants. In the present work, the perception of two synthetic C14 rhamnolipids, namely, AlkRL and Ac-RL, differing only at the level of the lipid tail terminal group have been investigated using biological and biophysical approaches. We showed that Alk-RL induces a stronger early signaling response in tobacco cell suspensions than does Ac-RL. The interactions of both synthetic RLs with simplified biomimetic membranes were further analyzed using experimental and in silico approaches. Our results indicate that the interactions of Alk-RL and Ac-RL with lipids were different in terms of insertion and molecular responses and were dependent on the lipid composition of model membranes. A more favorable insertion of Alk-RL than Ac-RL into lipid membranes is observed. Alk-RL forms more stable molecular assemblies than Ac-RL with phospholipids and sterols. At the molecular level, the presence of sterols tends to increase the RLs’ interaction with lipid bilayers, with a fluidizing effect on the alkyl chains. Taken together, our findings suggest that the perception of these synthetic RLs at the membrane level could be related to a lipid-driven process depending on the organization of the membrane and the orientation of the RLs within the membrane and is correlated with the induction of early signaling responses in tobacco cells.
- Published
- 2017
11. Author response: Structural basis for plant plasma membrane protein dynamics and organization into functional nanodomains
- Author
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Julien Gronnier, Jean-Marc Crowet, Birgit Habenstein, Mehmet Nail Nasir, Vincent Bayle, Eric Hosy, Matthieu Pierre Platre, Paul Gouguet, Sylvain Raffaele, Denis Martinez, Axelle Grelard, Antoine Loquet, Françoise Simon-Plas, Patricia Gerbeau-Pissot, Christophe Der, Emmanuelle M Bayer, Yvon Jaillais, Magali Deleu, Véronique Germain, Laurence Lins, and Sébastien Mongrand
- Published
- 2017
12. Membrane Interactions of Natural Cyclic Lipodepsipeptides of the Viscosin Group
- Author
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Jean-Marc Crowet, Krisztina Fehér, José C. Martins, Jos M. Raaijmakers, Niels Geudens, Mehmet Nail Nasir, Davy Sinnaeve, Magali Deleu, Tom Coenye, Laurence Lins, CBMN gembloux, and Microbial Ecology (ME)
- Subjects
0301 basic medicine ,spectroscopy ,Conformational change ,Magnetic Resonance Spectroscopy ,model membranes ,030106 microbiology ,Lipid Bilayers ,Biophysics ,cyclic lipodepsipeptide ,Microbial Sensitivity Tests ,Biology ,Gram-Positive Bacteria ,Biochemistry ,Peptides, Cyclic ,Chemical communication ,Permeability ,03 medical and health sciences ,chemistry.chemical_compound ,Lipopeptides ,Biosynthesis ,Bacterial Proteins ,Pseudomonas ,Gram-Negative Bacteria ,Spectroscopy, Fourier Transform Infrared ,viscosin group ,Cardiolipin ,POPC ,ComputingMilieux_MISCELLANEOUS ,antimicrobial activity ,Bilayer ,Circular Dichroism ,Biofilm ,Biological membrane ,Cell Biology ,[SDV.BBM.BP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biophysics ,030104 developmental biology ,Membrane ,chemistry ,international ,membrane permeabilization - Abstract
Many Pseudomonas spp. produce cyclic lipodepsipeptides (CLPs), which, besides their role in biological functions such as motility, biofilm formation and interspecies interactions, are antimicrobial. It has been established that interaction with the cellular membrane is central to the mode of action of CLPs. In this work, we focus on the CLPs of the so-called viscosin group, aiming to assess the impact of the main structural variations observed within this group on both the antimicrobial activity and the interaction with model membranes. The antimicrobial activity of viscosin, viscosinamide A, WLIP and pseudodesmin A were all tested on a broad panel of mainly Gram-positive bacteria. Their capacity to permeabilize or fuse PG/PE/cardiolipin model membrane vesicles is assessed using fluorescent probes. We find that the Glu2/Gln2 structural variation within the viscosin group is the main factor that influences both the membrane permeabilization properties and the minimum inhibitory concentration of bacterial growth, while the configuration of the Leu5 residue has no apparent effect. The CLP-membrane interactions were further evaluated using CD and FT-IR spectroscopy on model membranes consisting of PG/PE/cardiolipin or POPC with or without cholesterol. In contrast to previous studies, we observe no conformational change upon membrane insertion. The CLPs interact both with the polar heads and aliphatic tails of model membrane systems, altering bilayer fluidity, while cholesterol reduces CLP insertion depth.
- Published
- 2017
13. Molecular dynamics study of micelles properties according to their size
- Author
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Magali Deleu, Mehmet Nail Nasir, Simon Lebecque, Laurence Lins, Jean-Marc Crowet, and CBMN gembloux
- Subjects
Surface Properties ,Thermodynamics of micellization ,Context (language use) ,Nanotechnology ,02 engineering and technology ,Molecular Dynamics Simulation ,01 natural sciences ,Micelle ,Surface-Active Agents ,chemistry.chemical_compound ,Molecular dynamics ,0103 physical sciences ,Materials Chemistry ,Molecule ,Particle Size ,Physical and Theoretical Chemistry ,Micelles ,Spectroscopy ,ComputingMilieux_MISCELLANEOUS ,Aggregation number ,010304 chemical physics ,Sodium Dodecyl Sulfate ,Water ,021001 nanoscience & nanotechnology ,Computer Graphics and Computer-Aided Design ,[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] ,chemistry ,Chemical physics ,Critical micelle concentration ,0210 nano-technology ,Surfactin ,Hydrophobic and Hydrophilic Interactions - Abstract
Surfactants are molecules able to spontaneously self-assemble to form aggregates with well-defined properties, such as spherical micelles, planar bilayers, cylindrical micelles or vesicles. Micelles have notably several applications in many domains, such as drug delivery or membrane protein solubilization. In this context, the study of micelle formation in relation with the structural and physico-chemical properties of surfactants is of great interest to better control their use in the different application fields. In this work, we use the MD approach developed by Yoshii et al. and extend it to surfactants with different structures. We aim to systematically investigate different micellar properties as a function of the aggregates size by a molecular dynamics approach, to get an insight into the micellar organization and to collect some relevant descriptors about micelle formation. For this, we perform short MD simulations of preformed micelles of various sizes and analyze three parameters for each micelle size, namely the eccentricity of the micelles, the hydrophobic/hydrophilic surface ratio and the hydrophobic tails hydration. If these parameters are known descriptors of micelles, they were not yet studied in this way by MD. We show that eccentricity, used as "validator" parameter, exhibits minimal values when the aggregate size is close to the experimental aggregation number for surfactants that are known to form spherical micelles. This hence indicates that our methodology gives consistent results. The evolution of the two descriptors follows another scheme, with a sharp increase and decrease, respectively, followed by a leveling-off. The aggregate sizes at which this stabilization starts to occur are close to the respective aggregation number of each surfactant. In our approach, we validate the use of these descriptors to follow micelle formation by MD, from "simple" surfactants to more complex structures, like lipopeptides. Our calculations also suggest that some peculiar behavior, like that of TPC, can be highlighted by our approach. In the context of peptidic surfactants, our methodology could further help to improve computer simulations combined to molecular thermodynamic models to predict micellar properties of those more complex amphiphilic molecules.
- Published
- 2017
14. Interaction of fengycin with stratum corneum mimicking model membranes: A calorimetry study
- Author
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Mehmet Nail Nasir, Magali Deleu, Emma Sparr, Tommy Nylander, Gerd Olofsson, and Marc Eeman
- Subjects
Hot Temperature ,Time Factors ,Calorimetry ,Endothermic process ,Lipopeptides ,Colloid and Surface Chemistry ,Differential scanning calorimetry ,Phase (matter) ,Stratum corneum ,medicine ,Physical and Theoretical Chemistry ,Micelles ,Skin ,Chromatography ,Calorimetry, Differential Scanning ,integumentary system ,Chemistry ,Membranes, Artificial ,Isothermal titration calorimetry ,Surfaces and Interfaces ,General Medicine ,medicine.anatomical_structure ,Membrane ,Critical micelle concentration ,Biophysics ,lipids (amino acids, peptides, and proteins) ,Biotechnology - Abstract
Based on its outstanding antifungal properties, it is reasonable to believe that fengycin might be efficient to topically treat localized dermatomycoses. Since most of the fungi species involved in the formation of those mycotic skin diseases colonize primarily the stratum corneum (SC), studying the interaction between fengycin and SC-mimicking lipid membranes is a primary step to determine the potential of fengycin to overcome the physical barrier of the skin. In this respect, multilamellar lipid vesicles (MLVs), with a lipid composition mimicking that of the SC, were prepared and characterized by differential scanning calorimetry (DSC). The critical micelle concentration (CMC) of fengycin was also assessed under skin conditions and found to be 1.2±0.1μM. The molecular interactions of fengycin with SC-mimicking MLVs were investigated by both DSC and isothermal titration calorimetry (ITC). Results showed that the interactions were considerably affected by changes in lipid phase behaviour. At 40°C and below, fengycin induced exothermic changes in the lipid structures suggesting that less-ordered lipid domains became more-ordered in presence of fengycin. At 60°C, clearly endothermic interaction enthalpies were observed, which could arise from the "melting" of remaining solid domains enriched in high melting lipids that without fengycin melt at higher temperatures.
- Published
- 2014
15. Multi-scale modeling of mycosubtilin lipopeptides at the air/water interface: structure and optical second harmonic generation
- Author
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Françoise Besson, Claire Loison, Emmanuel Benichou, Mehmet Nail Nasir, Pierre-François Brevet, Institut Lumière Matière [Villeurbanne] (ILM), Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon, Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-École Supérieure Chimie Physique Électronique de Lyon-Centre National de la Recherche Scientifique (CNRS), Laboratoire d'océanographie de Villefranche (LOV), Observatoire océanologique de Villefranche-sur-mer (OOVM), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Université de Lyon-Université de Lyon-École Supérieure de Chimie Physique Électronique de Lyon (CPE)-Institut National des Sciences Appliquées de Lyon (INSA Lyon), and Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Models, Molecular ,Surface Properties ,Chemistry ,Air ,Lipoproteins ,Water ,General Physics and Astronomy ,Hyperpolarizability ,Mycosubtilin ,Nonlinear optics ,Second-harmonic generation ,Molecular Dynamics Simulation ,Quantum chemistry ,Lipopeptides ,Molecular dynamics ,Crystallography ,Chemical physics ,Monolayer ,Side chain ,Gases ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Physical and Theoretical Chemistry - Abstract
International audience; Monolayers of the lipopeptide mycosubtilin are studied at the air/water interface. Their structure is investigated using molecular dynamics simulations. All-atom models suggest that the lipopeptide is flexible and aggregates at the interface. To achieve simulation times of several microseconds, a coarse-grained (CG) model based on the MARTINI force field was also used. These CG simulations describe the formation of half-micelles at the interface for surface densities up to 1 lipopeptide per nm2. In these aggregates, the tyrosine side chain orientation is found to be constrained: on average, its main axis, as defined along the C–OH bond, aligns along the interface normal and points towards the air side. The origin of the optical second harmonic generation (SHG) from mycosubtilin monolayers at the air/water interface is also investigated. The molecular hyperpolarizability of the lipopeptide is obtained from quantum chemistry calculations. The tyrosine side chain contribution to the hyperpolarizability is found to be dominant. The orientation distribution of tyrosine, associated with a dominant hyperpolarizability component along the C–OH bond of the tyrosine, yields a ratio of the susceptibility elements χ(2)ZZZ/χ(2)ZXX consistent with the experimental measurements recently reported by M. N. Nasir et al. [Phys. Chem. Chem. Phys., 2013, 15, 19919].Previous Article | Next Article PaperMulti-scale modeling of mycosubtilin lipopeptides at the air/water interface: structure and optical second harmonic generationClaire Loison,*a Mehmet Nail Nasir,b Emmanuel Benichou,a Françoise Bessonb and Pierre-François Breveta Show AffiliationsPhys. Chem. Chem. Phys., 2014,16, 2136-2148DOI: 10.1039/C3CP53101EReceived 23 Jul 2013, Accepted 27 Nov 2013First published online 28 Nov 2013| |Share on citeulike|Share on facebook|Share on twitter|| More PDF Rich HTML Buy PDF Add PDF to Basket (£38*) *Exclusive of taxes This article contains 13 page(s)Download CitationHelpRequest PermissionsAccess DeniedPlease choose one of the options provided in the log in section to gain access to this content: Abstract Cited by Related Content Metrics Monolayers of the lipopeptide mycosubtilin are studied at the air/water interface. Their structure is investigated using molecular dynamics simulations. All-atom models suggest that the lipopeptide is flexible and aggregates at the interface. To achieve simulation times of several microseconds, a coarse-grained (CG) model based on the MARTINI force field was also used. These CG simulations describe the formation of half-micelles at the interface for surface densities up to 1 lipopeptide per nm2. In these aggregates, the tyrosine side chain orientation is found to be constrained: on average, its main axis, as defined along the C–OH bond, aligns along the interface normal and points towards the air side. The origin of the optical second harmonic generation (SHG) from mycosubtilin monolayers at the air/water interface is also investigated. The molecular hyperpolarizability of the lipopeptide is obtained from quantum chemistry calculations. The tyrosine side chain contribution to the hyperpolarizability is found to be dominant. The orientation distribution of tyrosine, associated with a dominant hyperpolarizability component along the C–OH bond of the tyrosine, yields a ratio of the susceptibility elements χ(2)ZZZ/χ(2)ZXX consistent with the experimental measurements recently reported by M. N. Nasir et al. [Phys. Chem. Chem. Phys., 2013, 15, 19919].
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- 2014
16. Interactions of the antifungal mycosubtilin with ergosterol-containing interfacial monolayers
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Françoise Besson and Mehmet Nail Nasir
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Stereochemistry ,Lipoproteins ,Stigmasterol ,Biophysics ,Mycosubtilin ,Lipopeptide ,Biochemistry ,Phase Transition ,chemistry.chemical_compound ,Bacterial Proteins ,Iturin ,Ergosterol ,Monolayer ,polycyclic compounds ,Animals ,BAM ,Chemistry ,Membranes, Artificial ,Biological membrane ,Cell Biology ,Sterol ,PM-IRRAS ,Membrane ,Cattle ,lipids (amino acids, peptides, and proteins) ,Sphingomyelin ,Bacillus subtilis - Abstract
Mycosubtilin, an antimicrobial lipopeptide produced by Bacillus subtilis , is characterized by strong antifungal activities. The molecular mechanisms of its biological activities on the membranes of the sensitive yeasts or fungi have not yet been clearly elucidated. Our purpose was to mimic the mycosubtilin interactions with these membranes using various Langmuir monolayers. Since the major sterol of yeasts or fungi is ergosterol, the interactions of mycosubtilin with monolayers constituted by ergosterol, DPPC/ergosterol or DPPC/sphingomyelin/ergosterol were examined at different initial surface pressures (Πi). Plotting the mycosubtilin-induced surface pressure increases versus Πi allowed to determine that the exclusion pressures of mycosubtilin from these different monolayers is higher than the surface prevailing within the biological membranes. However, this behavior was lost when mycosubtilin was interacting with ergosteryl acetate-containing monolayers. This suggests the involvement of the sterol alcohol group in the mycosubtilin interactions within membranes. Furthermore, the behavior of mycosubtilin with stigmasterol, similar to that observed with ergosterol, differs from that previously observed with cholesterol, suggesting a role of the alkyl side chain of the sterols. The adsorption of mycosubtilin to ergosterol monolayers induced changes in the lipopeptide orientation at the air–water interface as revealed by polarization modulation infrared reflection absorption spectroscopy (PM-IRRAS). Moreover, imaging the air–water interface by Brewster angle microscopy (BAM) indicates that mycosubtilin induced changes in the organization and morphology of monolayers containing pure ergosterol with the appearance of small condensed dots, suggesting again that the target of mycosubtilin might be the ergosterol present in the membranes of the sensitive yeasts or fungi.
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- 2012
17. Annexins as organizers of cholesterol- and sphingomyelin-enriched membrane microdomains in Niemann-Pick type C disease
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Gladys Matar, Joanna Bandorowicz-Pikula, Slawomir Pikula, Mehmet Nail Nasir, Françoise Besson, and Magdalena M. Domon
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Cell signaling ,Annexins ,Molecular Sequence Data ,Biology ,Cellular and Molecular Neuroscience ,Membrane Microdomains ,medicine ,Lysosomal storage disease ,Humans ,Amino Acid Sequence ,Molecular Biology ,Pharmacology ,Lipid microdomain ,Niemann-Pick Disease, Type C ,Cell Biology ,medicine.disease ,Sphingomyelins ,Cell biology ,Vesicular transport protein ,Cholesterol ,Biochemistry ,Molecular Medicine ,Signal transduction ,Niemann–Pick disease ,Sphingomyelin ,Sequence Alignment ,Intracellular - Abstract
Growing evidence suggests that membrane microdomains enriched in cholesterol and sphingomyelin are sites for numerous cellular processes, including signaling, vesicular transport, interaction with pathogens, and viral infection, etc. Recently some members of the annexin family of conserved calcium and membrane-binding proteins have been recognized as cholesterol-interacting molecules and suggested to play a role in the formation, stabilization, and dynamics of membrane microdomains to affect membrane lateral organization and to attract other proteins and signaling molecules onto their territory. Furthermore, annexins were implicated in the interactions between cytosolic and membrane molecules, in the turnover and storage of cholesterol and in various signaling pathways. In this review, we focus on the mechanisms of interaction of annexins with lipid microdomains and the role of annexins in membrane microdomains dynamics including possible participation of the domain-associated forms of annexins in the etiology of human lysosomal storage disease called Niemann-Pick type C disease, related to the abnormal storage of cholesterol in the lysosome-like intracellular compartment. The involvement of annexins and cholesterol/sphingomyelin-enriched membrane microdomains in other pathologies including cardiac dysfunctions, neurodegenerative diseases, obesity, diabetes mellitus, and cancer is likely, but is not supported by substantial experimental observations, and therefore awaits further clarification.
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- 2011
18. Specific Interactions of Mycosubtilin with Cholesterol-Containing Artificial Membranes
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Mehmet Nail Nasir, Françoise Besson, Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), and Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-École Supérieure Chimie Physique Électronique de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
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Surface Properties ,Lipoproteins ,Phospholipid ,Mycosubtilin ,010402 general chemistry ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Monolayer ,Electrochemistry ,Side chain ,General Materials Science ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Spectroscopy ,030304 developmental biology ,0303 health sciences ,Molecular Structure ,Cell Membrane ,Lipopeptide ,Membranes, Artificial ,Biological membrane ,Surfaces and Interfaces ,Condensed Matter Physics ,0104 chemical sciences ,Cholesterol ,Membrane ,chemistry ,Biochemistry ,lipids (amino acids, peptides, and proteins) ,Adsorption ,Sphingomyelin - Abstract
International audience; Mycosubtilin is a natural antimicrobial lipopeptide produced by Bacillus subtilis strains. It is characterized by its hemolytic and strong antifungal activities. Mycosubtilin interacts with the plasma membranes of sensitive cells. However, the molecular mechanisms of its biological activities have not been completely elucidated. Our purpose was therefore to analyze the interactions of mycosubtilin with biological membranes by using biomimetic membranes such as Langmuir monolayers and multilayers. Structural changes of mycosubtilin, involving its peptide backbone and the side chain of its tyrosyl residue, were observed when the lipopeptide was interacting with cholesterol-containing multilayers. The interactions of mycosubtilin with monolayers constituted by pure lipids and by phosholipid/cholesterol or phospholipid/sphingomyelin/cholesterol were also examined. An original behavior of mycosubtilin toward cholesterol-containing monolayers was found. However, this original behavior was lost when mycosubtilin was interacting with pure cholesterylacetate monolayers. This suggests the involvement of the alcohol group of cholesterol in mycosubtilin-cholesterol interactions within membranes. Moreover, mycosubtilin induced changes in the organization and morphology of cholesterol-containing monolayers, and large condensed domains with different levels of condensation appeared only in the case of DPPC/sphingomyelin/cholesterol monolayer.
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- 2011
19. Interactions of the natural antimicrobial mycosubtilin with phospholipid membrane models
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Françoise Besson, Achraf Kouzayha, Mehmet Nail Nasir, Ankita Thawani, Depierre, Frédérique, Génie Enzymatique et Cellulaire (GEC), Université de Technologie de Compiègne (UTC)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS), Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), and Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-École Supérieure Chimie Physique Électronique de Lyon-Centre National de la Recherche Scientifique (CNRS)
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Magnetic Resonance Spectroscopy ,Surface Properties ,Lipoproteins ,Molecular Conformation ,Phospholipid ,Mycosubtilin ,010402 general chemistry ,Models, Biological ,01 natural sciences ,Turn (biochemistry) ,03 medical and health sciences ,symbols.namesake ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Spectroscopy, Fourier Transform Infrared ,Monolayer ,Magic angle spinning ,Molecule ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Physical and Theoretical Chemistry ,[SDV.BBM.BC] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Phospholipids ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,0303 health sciences ,Brewster's angle ,Chemistry ,Air ,technology, industry, and agriculture ,Water ,Membranes, Artificial ,Surfaces and Interfaces ,General Medicine ,Anti-Bacterial Agents ,0104 chemical sciences ,Crystallography ,Membrane ,symbols ,lipids (amino acids, peptides, and proteins) ,Dimyristoylphosphatidylcholine ,Biotechnology - Abstract
Among the secondary metabolite lipopeptides produced by Bacillus subtilis, mycosubtilin is characterized by its strong antifungal activities. Even though its structure and its cellular target, the cytoplasmic membrane, have been determined, the molecular mechanisms of the biological activity of mycosubtilin have not been completely elucidated. In this work, the interactions between mycosubtilin and cytoplasmic membranes were modelled by using biomimetic systems such as Langmuir monolayers at the air-water interface and lipid multilamellar vesicles. The interactions of mycosubtilin with these biomimetic systems were examined, for the first time, by using specific techniques such as polarization modulation infrared reflection absorption spectroscopy, Brewster angle microscopy and high-resolution magic angle spinning NMR. Our findings indicate that mycosubtilin alone, at the air-water interface, forms a monolayer film and keeps its turn conformation. In the presence of DMPC, mycosubtilin binds to phospholipid monolayers, in a surface pressure-dependent manner. This binding results in the appearance of condensed domains which can be due to the formation of mycosubtilin clusters and/or to the lipopeptide aggregation with some phospholipid molecules and/or the formation of liquid-condensed domains of DMPC. Furthermore, in multilamellar vesicles, the mycosubtilin-DMPC interactions take place at the level of the aliphatic chains of the phospholipid because the phase transition temperature of DMPC decreased in the presence of mycosubtilin.
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- 2010
20. Conformational and Interfacial Analyses of K3A18K3 and Alamethicin in Model Membranes
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René Buchet, Achraf Kouzayha, Olivier Wattraint, Mehmet Nail Nasir, Françoise Besson, Catherine Sarazin, Génie Enzymatique et Cellulaire (GEC), Université de Technologie de Compiègne (UTC)-Université de Picardie Jules Verne (UPJV)-Centre National de la Recherche Scientifique (CNRS), Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), and Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-École Supérieure Chimie Physique Électronique de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
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Circular dichroism ,Magnetic Resonance Spectroscopy ,1,2-Dipalmitoylphosphatidylcholine ,MESH: 1,2-Dipalmitoylphosphatidylcholine ,MESH: Protein Structure, Secondary ,Peptide ,02 engineering and technology ,MESH: Spectroscopy, Fourier Transform Infrared ,Phase Transition ,Protein Structure, Secondary ,MESH: Circular Dichroism ,Hydrophobic effect ,MESH: Dimyristoylphosphatidylcholine ,03 medical and health sciences ,chemistry.chemical_compound ,Protein structure ,Spectroscopy, Fourier Transform Infrared ,Monolayer ,MESH: Water ,Materials Chemistry ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Alamethicin ,Physical and Theoretical Chemistry ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,MESH: Magnetic Resonance Spectroscopy ,Chemistry ,Air ,Circular Dichroism ,MESH: Alamethicin ,Water ,Membranes, Artificial ,021001 nanoscience & nanotechnology ,Surfaces, Coatings and Films ,Peptide Conformation ,Crystallography ,MESH: Air ,Membrane ,lipids (amino acids, peptides, and proteins) ,Adsorption ,MESH: Adsorption ,MESH: Membranes, Artificial ,MESH: Phase Transition ,Dimyristoylphosphatidylcholine ,0210 nano-technology - Abstract
International audience; The involvement of membrane-bound peptides and the influence of protein conformations in several neurodegenerative diseases lead us to analyze the interactions of model peptides with artificial membranes. Two model peptides were selected. The first one, an alanine-rich peptide, K3A18K3, was shown to be in alpha-helix structures in TFE, a membrane environment-mimicking solvent, while it was mostly beta-sheeted in aqueous buffer as revealed by infrared spectroscopy. The other, alamethicin, a natural peptide, was in a stable alpha-helix structure. To determine the role of the peptide conformation on the nature of its interactions with lipids, we compared the structure and topology of the conformational-labile peptide K3A18K3 and of the alpha-helix rigid alamethicin in both aqueous and phospholipid environments (Langmuir monolayers and multilamellar vesicles). K3A18K3 at the air-water interface showed a pressure-dependent orientation of its beta-sheets, while the alpha-helix axis of alamethicin was always parallel to the interface, as probed by polarization modulation infrared reflection absorption spectroscopy. The beta-sheeted K3A18K3 peptide was uniformly distributed into DPPC condensed domains, while the helical-alamethicin insertion distorted the DPPC condensed domains, as evidenced by Brewster angle microscopy imaging of the air/interface. The beta-sheeted K3A18K3 interacted with DMPC multilamellar vesicles via hydrophilic interactions with polar heads and the helical-alamethicin via hydrophobic interactions with alkyl chains, as shown by infrared spectroscopy and solid state NMR. Our findings are consistent with the prevailing assumption that the conformation of the peptide predetermines the mode of interaction with lipids. More precisely, helical peptides tend to be inserted via hydrophobic interactions within the hydrophobic region of membranes, while beta-sheeted peptides are predisposed to interact with polar groups and stay at the surface of lipid layers.
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- 2009
21. Reorientation of the helix of the tryptophan-rich gp41W peptide from HIV-1 at interfaces
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Gladys Matar, Pierre-François Brevet, Mehmet Nail Nasir, Yara El Harfouch, Françoise Besson, Emmanuel Benichou, Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-École Supérieure Chimie Physique Électronique de Lyon-Centre National de la Recherche Scientifique (CNRS), Institut Lumière Matière [Villeurbanne] (ILM), Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), and Université de Lyon-Université de Lyon
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Models, Molecular ,Diseases and conditions ,Molecular Sequence Data ,General Physics and Astronomy ,Peptide ,010402 general chemistry ,Surface pressure ,01 natural sciences ,Protein Structure, Secondary ,03 medical and health sciences ,[SPI]Engineering Sciences [physics] ,Electrostatics ,Polarization ,[CHIM]Chemical Sciences ,Amino Acid Sequence ,Physical and Theoretical Chemistry ,Lipid bilayer ,Peptide sequence ,Air-water interface ,Phospholipids ,030304 developmental biology ,chemistry.chemical_classification ,[PHYS]Physics [physics] ,0303 health sciences ,Air ,Molecular biophysics ,Tryptophan ,Water ,Proteins ,Phosphatidylglycerols ,Second harmonic generation ,Lipids ,HIV Envelope Protein gp41 ,Peptide Fragments ,0104 chemical sciences ,3. Good health ,Amino acid ,Crystallography ,Kinetics ,chemistry ,Helix ,HIV-1 ,Adsorption ,Glycoprotein ,Peptides - Abstract
International audience; The glycoprotein gp41 from the Human Immunodeficiency Virus type 1 (HIV-1) has an amino acid sequence enriched in tryptophan residues, the so-called gp41W peptide (i.e., KWASLWNWFNITNWLWYIK) and plays a crucial role in HIV-1 host cell infection. Using the coupling of Second Harmonic Generation targeting the tryptophan residues with lateral surface tension measurements, we investigate the interaction of gp41W with a neat air/water and a lipid/water interfaces. At the air/water interface, gp41W presents a well-defined orientation and this orientation is strongly modified at the lipid/water interface, depending on the surface pressure. These results show that this strategy is well suited to monitor tryptophan containing α-helices orientation at lipid/water interfaces.
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- 2013
22. Influence of the tyrosine environment on the second harmonic generation of iturinic antimicrobial lipopeptides at the air-water interface
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Mehmet Nail Nasir, Françoise Besson, Emmanuel Benichou, Pierre-François Brevet, Isabelle Russier-Antoine, Claire Loison, Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-École Supérieure Chimie Physique Électronique de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Institut Lumière Matière [Villeurbanne] (ILM), and Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)
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animal structures ,Surface Properties ,Stereochemistry ,General Physics and Astronomy ,Mycosubtilin ,02 engineering and technology ,010402 general chemistry ,Peptides, Cyclic ,01 natural sciences ,Absorption ,Lipopeptides ,chemistry.chemical_compound ,Bacillomycin ,Residue (chemistry) ,Anti-Infective Agents ,Amino Acid Sequence ,Physical and Theoretical Chemistry ,Tyrosine ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,chemistry.chemical_classification ,Air ,Tryptophan ,Water ,021001 nanoscience & nanotechnology ,Cyclic peptide ,0104 chemical sciences ,Amino acid ,Kinetics ,chemistry ,0210 nano-technology ,Surfactin - Abstract
International audience; The second harmonic generation (SHG) response at the air-water interface from the tyrosine-containing natural iturinic cyclo-lipopeptides mycosubtilin, iturin A and bacillomycin D is reported. It is shown that this response is dominated by the single tyrosine residue present in these molecules owing to the large first hyperpolarizability arising from the non-centrosymmetric aromatic ring structure of this amino acid. The SHG response of these iturinic antibiotics is also compared to the response of surfactin, a cyclo-lipopeptide with a similar l,d-amino acid sequence but lacking a tyrosine residue, and PalmATA, a synthetic linear lipopeptide possessing a single tyrosine residue but lacking the amino acid sequence structuring the cycle of the iturinic antibiotics. From the light polarization analysis of the SHG response, it is shown that the tyrosine local environment is critical in defining the SHG response of these peptides at the air-water interface. Our results demonstrate that tyrosine, similar to tryptophan, can be used as an endogenous molecular probe of peptides and proteins for SHG at the air-water interface, paving the way for SHG studies of other tyrosine-containing bioactive molecules.
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- 2013
23. Bolaamphiphiles Derived from Alkenyl L-Rhamnosides and Alkenyl D-Xylosides: Importance of the Hydrophilic Head
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Mehmet Nail Nasir, Nadia Klai, Magali Deleu, Sandrine Bouquillon, Sylvain Gatard, Vincent Legrand, Chimie Biologique et Industrielle (CBI), Université de Liège - Gembloux, Centre de Biophysique Moléculaire Numerique, and Faculté Universitaire des Sciences Agronomiques de Gembloux
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Langmuir ,glycosylation ,Pyridones ,Short Note ,Stereochemistry ,surfactant ,bolaform ,rhamnose ,Bolaamphiphile ,Pharmaceutical Science ,010402 general chemistry ,Metathesis ,01 natural sciences ,Analytical Chemistry ,lcsh:QD241-441 ,Pulmonary surfactant ,lcsh:Organic chemistry ,Spectroscopy, Fourier Transform Infrared ,Drug Discovery ,Molecule ,[CHIM]Chemical Sciences ,interfacial properties ,Physical and Theoretical Chemistry ,Fourier transform infrared spectroscopy ,Furans ,[PHYS]Physics [physics] ,Xylose ,Aqueous solution ,Molecular Structure ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,0104 chemical sciences ,Xyloside ,Chemistry (miscellaneous) ,Molecular Medicine ,metathesis - Abstract
International audience; The two step synthesis of a new bolaamphiphile derived from alkenyl l-rhamnosides was described. The general synthetic strategy of bolaamphiphiles derived from l-rhamnose was based on a previous work describing the synthesis of bolaamphiphiles derived from d-xylose. The conformational properties of this new compound were investigated by FTIR spectroscopy in an aqueous film in order to obtain a reference for further studies about the membrane-interacting properties. Moreover, the surface activity of this new bolaamphiphile was analyzed by Langmuir balance technology and was compared with that of the analogous bolaamphiphile derived from alkenyl D-xylosides. The findings indicate that the rhamnoside-based bolaform has an increased surface activity and a better ability to form aggregates than xyloside-based one.
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- 2013
24. Influence of the 524-VAAEIL-529 sequence of annexins A6 in their interfacial behavior and interaction with lipid monolayers
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Magdalena M. Domon, Slawomir Pikula, Mehmet Nail Nasir, Françoise Besson, Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-École Supérieure Chimie Physique Électronique de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Nencki Institute of Experimental Biology, Polska Akademia Nauk = Polish Academy of Sciences (PAN), and Depierre, Frédérique
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Gene isoform ,chemistry.chemical_element ,Sequence (biology) ,02 engineering and technology ,Calcium ,Protein Structure, Secondary ,Biomaterials ,03 medical and health sciences ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,020401 chemical engineering ,Annexin ,Monolayer ,Humans ,Protein Isoforms ,Langmuir monolayer ,Amino Acid Sequence ,Annexin A6 ,0204 chemical engineering ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,[SDV.BBM.BC] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,030304 developmental biology ,0303 health sciences ,pH-sensitivity ,Cholesterol ,Membranes, Artificial ,Recombinant Proteins ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,PM-IRRAS ,Membrane ,chemistry ,Biochemistry ,Models, Chemical ,Function (biology) - Abstract
International audience; Annexin A6 (AnxA6), a calcium- and membrane-binding protein, is expressed in mammalian cells in two isoforms: AnxA6-1 and AnxA6-2, the latter lacking the 524-VAAEIL-529 sequence at the start of repeat 7. The different intracellular localization of these two isoforms suggests distinct function in membrane dynamics. The aim of this work was to analyze the behavior of AnxA6 isoforms at the air/water interface alone and in the presence of membrane mimicking lipid monolayers. Using Langmuir technique showed that AnxA6-2 was less adsorbed to the neat air-water interface than AnxA6-1 at acidic pH and minor differences in their PM-IRRAS spectra were observed. Both isoforms exhibited similar behavior towards cholesterol monolayer. However, the interactions of AnxA6-2 with cholesterol ester monolayer were most favorable compared to AnxA6-1. Our experimental data are discussed in relation with the different intracellular localization of the two isoforms and with our constructed model of AnxA6-2 with the known crystal structure of AnxA6-1 showing the persistence of the 516-529 α-helix in AnxA6-2 despite the absence of the 524-VAAEIL-529 sequence.
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- 2013
25. Physico-chemical and membrane-interacting properties of D-xylose-based bolaforms. Influence of the anomeric configuration
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Sylvain Gatard, Magali Deleu, Sandrine Bouquillon, Laurence Lins, Vincent Legrand, Katherine Nott, Mehmet Nail Nasir, Cristallographie, Résonance Magnétique et Modélisations (CRM2), Centre National de la Recherche Scientifique (CNRS)-Université de Lorraine (UL), Institut des Sciences Moléculaires (ISM), Centre National de la Recherche Scientifique (CNRS)-École Nationale Supérieure de Chimie et de Physique de Bordeaux (ENSCPB)-Université Sciences et Technologies - Bordeaux 1-Université Montesquieu - Bordeaux 4-Institut de Chimie du CNRS (INC), Systèmes de Référence Temps Espace (SYRTE), Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut national des sciences de l'Univers (INSU - CNRS)-Observatoire de Paris, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS), Biomécanique et génie biomédical (BIM), Centre National de la Recherche Scientifique (CNRS), Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), and Université Montesquieu - Bordeaux 4-Université Sciences et Technologies - Bordeaux 1 (UB)-École Nationale Supérieure de Chimie et de Physique de Bordeaux (ENSCPB)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
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Degree of unsaturation ,Anomer ,Stereochemistry ,Acetal ,02 engineering and technology ,Xylose ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,Membrane ,chemistry ,lcsh:TA1-2040 ,Monolayer ,Organic chemistry ,Molecule ,[CHIM]Chemical Sciences ,0210 nano-technology ,lcsh:Engineering (General). Civil engineering (General) ,POPC ,ComputingMilieux_MISCELLANEOUS - Abstract
Sugar-based biosurfactants such as xylose-derived bolaforms have interesting properties, for example high biocompatibility and biodegradability which make them potential useful molecules in the pharmaceutical and cosmetic fields. Until now, no detailed analyses of the physico-chemical properties of these compounds have been undertaken. Two symmetrical D-xylose-based bolaforms were chemically synthesized where the two xylose heads are linked via an acetal link to a hydrocarbon chain containing 18 carbon atoms and an unsaturation. The two bolaforms differ only by their anomeric configuration: αα or ββ. The αα bolaform exhibits interfacial properties at the air-water interface which is not the case for the ββ. FTIR spectroscopy showed that the interactions between the αα bolaform and POPC, a model phospholipid, involve the carbonyl groups of the phospholipid. .
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- 2013
26. Second harmonic generation from tyrosine containing peptides
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Emeric Bergmann, Emmanuel Benichou, Isabelle Russier-Antoine, Noëlle Lascoux, Françoise Besson, Pierre-François Brevet, Christian Jonin, Mehmet Nail Nasir, Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-École Supérieure Chimie Physique Électronique de Lyon-Centre National de la Recherche Scientifique (CNRS), Institut Lumière Matière [Villeurbanne] (ILM), Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), and Université de Lyon-Université de Lyon
- Subjects
chemistry.chemical_classification ,[PHYS]Physics [physics] ,animal structures ,Mycosubtilin ,Second-harmonic generation ,Hyperpolarizability ,Peptide ,chemistry.chemical_compound ,[SPI]Engineering Sciences [physics] ,chemistry ,Biophysics ,Aromatic amino acids ,[CHIM]Chemical Sciences ,Tyrosine ,Molecular probe ,Surfactin - Abstract
International audience; The Second Harmonic Generation (SHG) response from Tyrosine-containing peptides at the air-water interface is presented. First, the quadratic hyperpolarizability of the aromatic amino acid Tyrosine obtained by Hyper Rayleigh Scattering is reported, demonstrating its potentiality as an endogenous molecular probe for SHG studies. Then, the single Tyrosine antimicrobial peptide Mycosubtilin is monitored at the air-water interface and compared to another peptide, Surfactin, lacking a Tyrosine residue. Adsorption kinetics and polarization analysis of the SHG intensity for the peptide monolayers clearly demonstrate that the SHG response from Mycosubtilin arises from Tyrosine. Besides, it confirms that indeed Tyrosine can be targeted as an endogenous molecular probe.
- Published
- 2013
27. Analysis of calcium-induced effects on the conformation of fengycin
- Author
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Laurence Lins, Pascal Laurent, Marc Ongena, Christelle Flore, Magali Deleu, and Mehmet Nail Nasir
- Subjects
Circular dichroism ,Antifungal Agents ,Stereochemistry ,chemistry.chemical_element ,Calcium ,Protein Structure, Secondary ,Analytical Chemistry ,Turn (biochemistry) ,Lipopeptides ,Phospholipase A2 ,Protein structure ,Spectroscopy, Fourier Transform Infrared ,Amino Acid Sequence ,Tyrosine ,Binding site ,Instrumentation ,Nuclear Magnetic Resonance, Biomolecular ,Spectroscopy ,Calcium metabolism ,Binding Sites ,biology ,Circular Dichroism ,Atomic and Molecular Physics, and Optics ,Spectrometry, Fluorescence ,chemistry ,biology.protein ,Bacillus subtilis - Abstract
Fengycin is a natural lipopeptide with antifungal and eliciting properties and able to inhibit the activity of phospholipase A2. A combination of CD, FT-IR, NMR and fluorescence spectroscopic techniques was applied to elucidate its conformation in a membrane-mimicking environment and to investigate the effect of calcium ions on it. We mainly observed that fengycin adopts a turn conformation. Our results showed that calcium ions are bound by the two charged glutamates. The calcium binding has an influence on the fengycin conformation and more particularly, on the environment of the tyrosine residues. The modulation of the fengycin conformation by the environmental conditions may influence its biological properties.
- Published
- 2012
28. Conformational analyses of bacillomycin D, a natural antimicrobial lipopeptide, alone or in interaction with lipid monolayers at the air-water interface
- Author
-
Mehmet Nail Nasir and Françoise Besson
- Subjects
Models, Molecular ,Stereochemistry ,Protein Conformation ,Surface Properties ,Infrared spectroscopy ,Bacillus subtilis ,Biomaterials ,Turn (biochemistry) ,chemistry.chemical_compound ,Lipopeptides ,Membrane Lipids ,Colloid and Surface Chemistry ,Protein structure ,Anti-Infective Agents ,Monolayer ,Amino Acid Sequence ,biology ,Chemistry ,Air ,Lipopeptide ,Water ,Biological activity ,biology.organism_classification ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Membrane ,Cholesterol ,Phosphatidylcholines ,Peptides ,Antimicrobial Cationic Peptides - Abstract
Bacillomycin D is a natural antimicrobial lipopeptide belonging to the iturin family. It is produced by Bacillus subtilis strains. Bacillomycin D is characterized by its strong antifungal and hemolytic properties, due to its interaction with the plasma membrane of sensitive cells. Until now, only few limited analyses were conducted to understand the biological activities of bacillomycin D at the molecular level. Our purpose was to analyze the conformation of bacillomycin D using IR spectroscopy and to model its interactions with cytoplasmic membranes using Langmuir interfacial monolayers. Our findings indicate that bacillomycin D contains turns and allow to model its three-dimensional structure. Bacillomycin D formed a monolayer film at the air-water interface and kept its turn conformation, as shown by polarization modulation infrared reflection absorption spectroscopy (PM-IRRAS). To identify the membrane lipid target of bacillomycin D, its interactions with pure lipid monolayers were analyzed and an original behavior of the lipopeptide toward cholesterol-containing monolayers was shown. This original behavior was lost when bacillomycin D was interacting with pure cholesteryl acetate monolayers, suggesting the involvement of the alcohol group of cholesterol in the lipopeptide-cholesterol interaction.
- Published
- 2012
29. Interfacial properties and structure stability of the gp41 tryptophan-rich peptide from HIV-1
- Author
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Gladys Matar, Françoise Besson, Mehmet Nail Nasir, Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-École Supérieure Chimie Physique Électronique de Lyon-Centre National de la Recherche Scientifique (CNRS), and Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-École Supérieure Chimie Physique Électronique de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Tris ,Models, Molecular ,Absorption spectroscopy ,MESH: HIV Envelope Protein gp41 ,Protein Conformation ,Surface Properties ,Peptide ,010402 general chemistry ,Surface pressure ,Crystallography, X-Ray ,01 natural sciences ,MESH: HIV-1 ,Biomaterials ,03 medical and health sciences ,symbols.namesake ,chemistry.chemical_compound ,MESH: Protein Conformation ,Colloid and Surface Chemistry ,Protein structure ,Monolayer ,MESH: Water ,Pressure ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,MESH: Surface Properties ,chemistry.chemical_classification ,0303 health sciences ,Brewster's angle ,Air ,Water ,MESH: Crystallography, X-Ray ,HIV Envelope Protein gp41 ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,Crystallography ,MESH: Air ,Membrane ,chemistry ,symbols ,HIV-1 ,MESH: Pressure ,MESH: Models, Molecular - Abstract
International audience; The HIV-1 envelope glycoprotein 41 (gp41) undergoes large-scale conformational changes in order to induce the fusion of the virus and cell membranes. Thus, we investigated a possible structure transit at the air-water interface for the tryptophan-rich peptide of gp41 (gp41W). The synthetic peptide (KWASLWNWFNITNWLWYIK), corresponding to gp41W, shows interfacial properties on pure water and Tris buffer at pH 8.5. Isotherm measurements and Brewster angle microscopy (BAM) imaging showed that the behavior of the peptide monolayer was dependent on the subphase composition. A homogenous film was formed on buffer during the peptide monolayer compression, while the appearance of condensed domains on pure water could indicate the oligomerization of gp41W during the surface pressure increase. Polarization modulation infrared reflection absorption spectroscopy (PM-IRRAS) showed that, whatever the subphase, gp41W adopts an α-helix structure at the air-water interface and does not transit for any other structure even at high surface pressures.
- Published
- 2010
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