445 results on '"Jessica A Davis"'
Search Results
402. Interstitial deletion of chromosome 2 (p23p25)
- Author
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Victor B. Penchaszadeh, Patricia K. Dowling, Jessica G. Davis, Rina Schmidt, Raul A. Wapnir, John M. Opitz, and James F. Reynolds
- Subjects
Genetic Markers ,Male ,medicine.medical_specialty ,Microcephaly ,Erythrocytes ,Clinodactyly ,Acid Phosphatase ,Chromosome Disorders ,Biology ,Malate dehydrogenase ,Loss of heterozygosity ,Malate Dehydrogenase ,Intellectual Disability ,Internal medicine ,medicine ,Humans ,Abnormalities, Multiple ,Genetics (clinical) ,Chromosome Aberrations ,Red Cell ,Psychomotor retardation ,Infant, Newborn ,Occiput ,medicine.disease ,Endocrinology ,medicine.anatomical_structure ,Chromosomes, Human, Pair 2 ,Failure to thrive ,Chromosome Deletion ,medicine.symptom - Abstract
We report a patient with a de novo interstitial deletion of the short arm of chromosome 2 (p23p25). The patient had microcephaly with prominent forehead and occiput, narrow rectangular face, clinodactyly, failure to thrive, delayed psychomotor development, and seizures. Maternal serum alpha-fetoprotein was undetectable at 18 weeks of gestation. Heterozygosity at the red cell acid phosphatase locus (SRO-2p25) and normal levels of red cell malate dehydrogenase (SRO-2p23) are findings consistent with the presence of genetic material from bands 2p25 and 2p23.
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- 1987
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403. Berry aneurysms, cirrhosis, pulmonary emphysema, and bilateral symmetrical cerebral calcifications: A new syndrome
- Author
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Ellen Kahn, James Markowitz, Lynn Duffy, Kenneth Kenigsberg, Jessica G. Davis, Fredric Daum, John M. Opitz, and Jay Bernstein
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Liver Cirrhosis ,Male ,Pathology ,medicine.medical_specialty ,Cirrhosis ,Adolescent ,Cerebral calcification ,Autopsy ,medicine ,Humans ,Child ,Genetics (clinical) ,Brain Diseases ,Lung ,business.industry ,Cerebrum ,Calcinosis ,Intracranial Aneurysm ,Syndrome ,Anatomy ,medicine.disease ,Dentate nucleus ,medicine.anatomical_structure ,Pulmonary Emphysema ,Child, Preschool ,Portal hypertension ,business ,Calcification - Abstract
Familial idiopathic nonarteriosclerotic cerebral calcification (FINCC) constitutes a rare but pathologically well defined disorder. Thus far, central nervous system symptoms and signs have been the only recorded expression of this disease. Autosomal dominant and autosomal recessive inheritance have both been postulated as cause. We describe three sibs who had symmetrical cerebral calcifications, but three also had cirrhosis and pulmonary emphysema; two had congenital cerebral aneurysms. All were male and of short stature; they also had delayed development and seizures, and two had other neurologic deficits. One sib died at age 3 years of hepatic failure and portal hypertension. Ruptured cerebral aneurysms led to the death of the other two boys at ages 8 and 13 years. The cerebral calcifications symmetrically involved the basal ganglia and thalami, the dentate nucleus, and the cortical and subcortical areas of the cerebrum. The liver was studied by sequential biopsies in two of the children and in all three by autopsy. Fatty degeneration and portal fibrosis preceded a periportal and micronodular cirrhosis. Severe bilateral pulmonary emphysema was present in one sib at age 12 years, whereas all three had bullae and cysts at autopsy. Ruptured left middle cerebral artery aneurysms were demonstrated in two sibs, and one also had aneurysms of the anterior and posterior communicating arteries. We conclude that in this family FINCC is a complex pleiotropic mendelian mutation, either of autosomal or X-linked recessive nature, whose basic pathogenesis remains unknown but may involve a metabolic defect. This form of FINCC may be a previously undescribed syndrome or a form of FINCC in which extraneural manifestations were previously overlooked.
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- 1987
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404. De novo trisomy 9pter?q13
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Nataline B. Kardon, Marian Krauss, H. R. Salwen, Jessica G. Davis, and Edmund C. Jenkins
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Pathology ,medicine.medical_specialty ,Genetics ,medicine ,Urogenital Abnormality ,Biology ,Trisomy ,medicine.disease ,Genetics (clinical) - Abstract
A case of de novo trisomy 9p was observed. Cytogenetic analysis of G-, R-, Q-, and C-banded preparations revealed a karyotypic description of 47,XY,+del(9)(pter leads to q13). In addition to the principal characteristics of the 9p trisomy syndrome, the child presented with skeletal and urogenital abnormalities. It appears that certain clinical abnormalities are due to trisomy of 9q1.
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- 1977
- Full Text
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405. Cytogenetic findings in the dysmyelopoietic syndrome
- Author
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Jessica G. Davis, Thomas J. Degnan, Daniel R. Budman, Vincent Vinciguerra, Nataline B. Kardon, and Philip Schulman
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Cancer Research ,medicine.medical_specialty ,Pathology ,Acute leukemia ,business.industry ,Clinical course ,Idiopathic sideroblastic anemia ,Chronic myelomonocytic leukemia ,Karyotype ,Clinical correlation ,medicine.disease ,Gastroenterology ,medicine.anatomical_structure ,Oncology ,Internal medicine ,medicine ,Bone marrow ,Refractory anemia with excess of blasts ,business - Abstract
Cytogenetic studies of bone marrow specimens from 15 patients with dysmyelopoietic syndrome are presented. The group consists of nine patients with refractory anemia with excess of blasts (RAEB), three patients with chronic myelomonocytic leukemia (CMMoL), and three patients with acquired idiopathic sideroblastic anemia (AISA). None of these patients had a prior history of therapeutic or occupational exposure to potential carcinogenic agents, G(TG)-banding revealed clonal abnormalities in nine of the 15 patients. Five of these patients exhibited one or more of the following cytogenetic abnormalities: 5q deletion, -7, +8, or +21. The AISA group appeared to be unique as chromosome abnormalities were seen in two of the three patients and the clinical course in these patients had been prolonged without progression to acute leukemia. No other clinical correlation could be made in the blast RAEB and CMMoL groups, except for possible survival benefit in patients with normal karyotypes.
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- 1982
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406. Factors influencing mammalian X chromosome condensation and sex chromatin formation
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Tina Ditta, Phyllis Goldhuber, Jessica G. Davis, C. Mattingly, J. Leitner, H. Rubin, and Harold P. Klinger
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Lyon Hypothesis ,Cell ,Chromosome ,Embryo ,Biology ,Sex chromatin ,Molecular biology ,Cell biology ,medicine.anatomical_structure ,Genetics ,medicine ,Interphase ,Molecular Biology ,Nucleus ,Genetics (clinical) ,X chromosome - Abstract
The aim of this study is to determine why, in contrast to expectations based on the Lyon hypothesis, a variable number of nuclei of cells from mammalian females are sex chromatin negative. The frequency of sex chromatin positive nuclei was determined in cell cultures of varying cell densities. The cells were derived from seven chromosomally normal human female embryos, one newborn female with an extra E group chromosome and two normal male embryos. In all cultures of females the frequency of sex chromatin positive nuclei increased linearly from about 35% to 60% at cell densities of less than one cell per 0.01 mm2 of culture surface to 90% to 100% at densities of 20 to 125 cells per 0.01 mm2. This frequency-to-density relationship was independent of the mitotic rate and the rate at which cell density increased. When large variations in cell density were produced intentionally on the same glass coverslip, sex chromatin frequency was related to the density of cells in any one area of a coverslip and seemed to be largely independent of the cell density in other parts of the coverslip. The frequency of sex-chromatin-like bodies of male cultures remained very low at all cell densities. These and other preliminary observations described suggest that, in the nucleus of the female, sex chromatin formation resulting from the condensation of an X chromosome at interphase is not directly related to the mitotic cycle but may be related to the metabolic state of the cell.
- Published
- 1968
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407. Evaluation of FluSight influenza forecasting in the 2021–22 and 2022–23 seasons with a new target laboratory-confirmed influenza hospitalizations
- Author
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Sarabeth M. Mathis, Alexander E. Webber, Tomás M. León, Erin L. Murray, Monica Sun, Lauren A. White, Logan C. Brooks, Alden Green, Addison J. Hu, Roni Rosenfeld, Dmitry Shemetov, Ryan J. Tibshirani, Daniel J. McDonald, Sasikiran Kandula, Sen Pei, Rami Yaari, Teresa K. Yamana, Jeffrey Shaman, Pulak Agarwal, Srikar Balusu, Gautham Gururajan, Harshavardhan Kamarthi, B. Aditya Prakash, Rishi Raman, Zhiyuan Zhao, Alexander Rodríguez, Akilan Meiyappan, Shalina Omar, Prasith Baccam, Heidi L. Gurung, Brad T. Suchoski, Steve A. Stage, Marco Ajelli, Allisandra G. Kummer, Maria Litvinova, Paulo C. Ventura, Spencer Wadsworth, Jarad Niemi, Erica Carcelen, Alison L. Hill, Sara L. Loo, Clifton D. McKee, Koji Sato, Claire Smith, Shaun Truelove, Sung-mok Jung, Joseph C. Lemaitre, Justin Lessler, Thomas McAndrew, Wenxuan Ye, Nikos Bosse, William S. Hlavacek, Yen Ting Lin, Abhishek Mallela, Graham C. Gibson, Ye Chen, Shelby M. Lamm, Jaechoul Lee, Richard G. Posner, Amanda C. Perofsky, Cécile Viboud, Leonardo Clemente, Fred Lu, Austin G. Meyer, Mauricio Santillana, Matteo Chinazzi, Jessica T. Davis, Kunpeng Mu, Ana Pastore y Piontti, Alessandro Vespignani, Xinyue Xiong, Michal Ben-Nun, Pete Riley, James Turtle, Chis Hulme-Lowe, Shakeel Jessa, V. P. Nagraj, Stephen D. Turner, Desiree Williams, Avranil Basu, John M. Drake, Spencer J. Fox, Ehsan Suez, Monica G. Cojocaru, Edward W. Thommes, Estee Y. Cramer, Aaron Gerding, Ariane Stark, Evan L. Ray, Nicholas G. Reich, Li Shandross, Nutcha Wattanachit, Yijin Wang, Martha W. Zorn, Majd Al Aawar, Ajitesh Srivastava, Lauren A. Meyers, Aniruddha Adiga, Benjamin Hurt, Gursharn Kaur, Bryan L. Lewis, Madhav Marathe, Srinivasan Venkatramanan, Patrick Butler, Andrew Farabow, Naren Ramakrishnan, Nikhil Muralidhar, Carrie Reed, Matthew Biggerstaff, and Rebecca K. Borchering
- Subjects
Science - Abstract
Abstract Accurate forecasts can enable more effective public health responses during seasonal influenza epidemics. For the 2021–22 and 2022–23 influenza seasons, 26 forecasting teams provided national and jurisdiction-specific probabilistic predictions of weekly confirmed influenza hospital admissions for one-to-four weeks ahead. Forecast skill is evaluated using the Weighted Interval Score (WIS), relative WIS, and coverage. Six out of 23 models outperform the baseline model across forecast weeks and locations in 2021–22 and 12 out of 18 models in 2022–23. Averaging across all forecast targets, the FluSight ensemble is the 2nd most accurate model measured by WIS in 2021–22 and the 5th most accurate in the 2022–23 season. Forecast skill and 95% coverage for the FluSight ensemble and most component models degrade over longer forecast horizons. In this work we demonstrate that while the FluSight ensemble was a robust predictor, even ensembles face challenges during periods of rapid change.
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- 2024
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408. ANEUPLOIDY AND THE OLDER GRAVIDA: WHICH RISK TO QUOTE
- Author
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ElaineH. Zackai, Marian Krauss, Jessica G. Davis, WilliamJ. Mellman, PhilipR. Wyatt, MichaelT. Mennuti, RichardS. Spielman, Gittel Silverberg, and Nataline B. Kardon
- Subjects
medicine.medical_specialty ,Obstetrics ,business.industry ,medicine ,Aneuploidy ,General Medicine ,medicine.disease ,business - Published
- 1978
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409. De novo duplication of the 7q11 leads to q22 region
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Jessica G. Davis, Marian Krauss, L Pollack, A Broekman, and Nataline B. Kardon
- Subjects
Chromosome Aberrations ,Chromosomes, Human, 6-12 and X ,Male ,Enophthalmos ,Long philtrum ,Infant ,Short neck ,Anatomy ,Biology ,Frontal Bossing ,Posteriorly-rotated ears ,Gene duplication ,Chromosomes, Human, 21-22 and Y ,Genetics ,medicine ,Humans ,Abnormalities, Multiple ,Delayed growth ,Almond-shaped eyes ,medicine.symptom ,Genetics (clinical) ,Research Article - Abstract
A patient with de novo partial trisomy for the 7q11 leads to 7q22 region as defined by methotrexate high resolution banding is described. he presented with delayed growth and development and characteristic physical features. These consisted of frontal bossing, prominent metopic suture, almond shaped eyes, enophthalmos, large, low set, posteriorly rotated ears, long philtrum, narrow upper lip, high arched palate, and a short neck. Specific genitourinary anomalies were noted.
- Published
- 1983
- Full Text
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410. A child with presumptive monosomy 21 (45,XY,-21) in a family in which some members are Gq
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Edmund C. Jenkins, R.G. Weed, Jessica G. Davis, and Harold P. Klinger
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Male ,Pathology ,medicine.medical_specialty ,Monosomy ,Chromosome Disorders ,Biology ,Severe psychomotor retardation ,Genetics ,medicine ,Chromosomes, Human, 21-22 and Y ,Humans ,Abnormalities, Multiple ,MULTIPLE MALFORMATIONS ,Child ,Molecular Biology ,Genetics (clinical) ,Chromosome Aberrations ,Sex Chromosomes ,Infant, Newborn ,Chromosome ,Infant ,Karyotype ,medicine.disease ,Phenotype ,Child, Preschool ,Karyotyping ,Chromosome Deletion ,Chromosome 21 ,Duffy Blood-Group System - Abstract
Presumptive monosomy for chromosome 21 was found in a male child with multiple malformations and severe psychomotor retardation. Chromosome analyses of cells from blood and skin samples were performed at intervals during the first few years of his life. In preparations stained with nonbanding as well as quinacrine, Giemsa, and reverse acridine orange banding techniques, only one No. 21 chromosome could be detected with no apparent abnormalities of the other chromosomes. The proband’s phenotypically normal father, paternal grandfather, brother, and paternal aunt have a deletion for a short segment of the long arm of a G-group chromosome. Genetic-marker studies allow the exclusion of a number of blood groups as being associated with No. 21. There is inconclusive evidence suggesting that expression of the Duffy blood group, which has been mapped to chromosome 1, may be influenced by genetic information on chromosome 21. This family is of potential value for further gene-mapping studies.
- Published
- 1976
411. A liveborn case of 49,XXXY, + 18
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Jessica G. Davis, A L Berger, M Elice, Nataline B. Kardon, and Edmund C. Jenkins
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Proband ,Genetics ,Male ,congenital, hereditary, and neonatal diseases and abnormalities ,X Chromosome ,Infant, Newborn ,Chromosome ,Karyotype ,Trisomy ,Biology ,medicine.disease ,Phenotype ,Karyotyping ,medicine ,Humans ,Abnormalities, Multiple ,Female ,Genetics (clinical) ,Sex Chromosome Aberrations ,Chromosomes, Human, 16-18 ,Research Article - Abstract
The first case of a liveborn male infant trisomic for both the X and the No 18 chromosome is presented. The patient had multiple congenital anomalies many of which were similar in appearance to patients with trisomy 18. The proband died after 2 days. Both maternal and paternal karyotypes were normal.
- Published
- 1980
412. Infantile spasms in Down syndrome: a report of 5 cases and review of the literature
- Author
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Michael A. Pollack, Gerald S. Golden, Jessica A. Davis, Norman E. Leeds, and Rina Schmidt
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Male ,Pediatrics ,medicine.medical_specialty ,Down syndrome ,Pathology ,business.industry ,Incidence (epidemiology) ,Central nervous system ,Brain ,Infant ,Electroencephalography ,Serotonin metabolism ,medicine.disease ,5-Hydroxytryptophan ,Epilepsy ,medicine.anatomical_structure ,Neurology ,Medicine ,Humans ,Female ,Neurology (clinical) ,Serotonin ,Down Syndrome ,business ,Spasms, Infantile - Abstract
Five patients with Down syndrome (DS) and infantile spasms were examined in a four-year interval. Previous reports of this association have been infrequent except during experimental treatment with 5-hydroxytryptophan, a precursor of serotonin. Malformations of the brain in DS are associated with an increased incidence of epilepsy, and both gross and cytoarchitectural anomalies have been described. The severity and distribution of these central nervous system anomalies presumably predispose to the infantile spasms. The contribution of altered serotonin metabolism is uncertain.
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- 1978
413. Incidence of chromosomal rearrangements in couples with reproductive loss
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Nataline B. Kardon, Afina Broekman, Jessica G. Davis, and Ann L. Berger
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Chromosome Aberrations ,Male ,Genetics ,Abortion, Habitual ,Previous child ,Incidence (epidemiology) ,Chromosome ,Chromosomal translocation ,Biology ,Amniotic Fluid ,medicine.disease ,Translocation, Genetic ,Human genetics ,Chromosome Banding ,Past history ,Pregnancy ,Karyotyping ,Chromosome abnormality ,medicine ,Humans ,Abnormalities, Multiple ,Female ,Metabolic disease ,Genetics (clinical) - Abstract
We report on 50 couples with reproductive loss who did not have any detectable chromosome abnormality. A history of a previous child with multiple congenital abnormalities may be significant in identifying couples with a structural rearrangement. Only by studying more families can this hypothesis be tested. Studies of abortus tissue reveal a high percentage of chromosome abnormalities but a very low incidence of unbalanced translocations. Cytogenetic studies are indicated in a couple which has a past history of spontaneous abortions and a previous child with multiple congenital anomalies.
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- 1980
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414. Decisions about Reproduction: Genetic Counseling
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Jessica G. Davis
- Subjects
Down syndrome ,Genetic counseling ,Heredity ,medicine ,Prenatal diagnosis ,Reproductive decision ,Surgical correction ,Biology ,medicine.disease_cause ,medicine.disease ,Bioinformatics ,Gene ,Human genetics - Abstract
Recent advances in human genetics and medicine have increased our understanding of genetic disorders and have enabled us to participate in reproductive decision making and behavior. The chemical structure of DNA and the underlying biochemical mechanism for many hereditary disorders are understood. Tissue culture techniques permit cells to be grown and analyzed, both biochemically and cytogenetically, in laboratories. Many genetic disorders that result in birth defects are amenable to surgical correction. Specific chromosome abnormalities, many inborn errors of metabolism, and some birth defects can now accurately be detected in utero, with little risk to mother or fetus. Genetic counseling services have expanded, and the ability to detect genetic defects in asymptomatic carriers of mutant genes has increased. Genetic screening programs, implemented in many communities, have gradually increased public awareness of problems of heredity. This cumulative increase in theory and practice constitutes a quantum leap in knowledge.
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- 1978
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415. Genetic Disease, Government, and Social Justice
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Jessica G. Davis
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medicine.medical_specialty ,Government ,Service (systems architecture) ,business.industry ,Disease ,Genetic program ,Public relations ,Information media ,Social justice ,Public interest ,Management ,medicine ,Medical genetics ,business - Abstract
A series of critical discoveries in biochemical, cellular, and molecular biology, coupled with an array of innovative technologies, inaugurated the “golden age of medical genetics” in the 1950s. A cascade of brand-new genetic information and techniques followed. Many of these discoveries had immediate and direct clinical application, leading to an expansion of diagnostic treatment and counseling capabilities. Comprehensive genetic service and screening programs began to be organized and implemented. These programs were designed to meet the needs of an ever-increasing number of individuals and their familes that had or were at risk for genetic disease or birth defects. Public interest and expectations grew, reinforced by the information media’s unprecendented coverage of all aspects of medical genetics.
- Published
- 1985
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416. Evaluation of the aorta in the Marfan syndrome by magnetic resonance imaging
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Sharanjeet Singh, Michael A. LaCorte, Harry L. Stein, Mitchell Goldman, Robert A. Boxer, and Jessica G. Davis
- Subjects
Marfan syndrome ,Adult ,Male ,Aorta ,medicine.medical_specialty ,Magnetic Resonance Spectroscopy ,medicine.diagnostic_test ,Adolescent ,business.industry ,Magnetic resonance imaging ,medicine.disease ,Aortic disease ,Marfan Syndrome ,medicine.artery ,Medicine ,Humans ,Female ,Radiology ,Cardiology and Cardiovascular Medicine ,business ,Child ,Dilatation, Pathologic - Published
- 1986
417. Counseling Parents after the Birth of an Infant with Down’s Syndrome
- Author
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Jessica G. Davis and Deborah A. Golden
- Subjects
Down syndrome ,Pediatrics ,medicine.medical_specialty ,S syndrome ,business.industry ,Genetic counseling ,MEDLINE ,Human physical appearance ,medicine.disease ,Counseling parents ,Chromosome (genetic algorithm) ,Clinical diagnosis ,medicine ,business - Abstract
Approximately one in every 600 babies born in this country is diagnosed as having Down’s Syndrome. The condition has lifelong implications for physical appearance, intellectual achievement, and general functioning. It is usually suspected at the time of delivery or shortly thereafter. The clinical diagnosis must be confirmed by chromosome studies for the child with this syndrome has extra genetic material, usually in the form of an entire extra chromosome.
- Published
- 1977
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418. Partial deletion of the short arm of chromosome no. 4(4p-): clinical studies in five unrelated patients
- Author
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Dorothy Warburton, Eve McGilvray, W. Roy Breg, Fred H. Allen, Adriana deCapoa, Orlando J. Miller, Dorothy A. Miller, Penelope W. Allderdice, Harold P. Klinger, and Jessica G. Davis
- Subjects
Cri-du-Chat Syndrome ,Male ,Heterozygote ,Cri du chat ,Chromosome Disorders ,Diagnosis, Differential ,Medicine ,Birth Weight ,Humans ,Abnormalities, Multiple ,Chromosomes, Human, 4-5 ,Dermatoglyphics ,Child ,Sinus (anatomy) ,Chromosome Aberrations ,Coloboma ,Psychomotor retardation ,business.industry ,Infant ,Karyotype ,Anatomy ,medicine.disease ,body regions ,medicine.anatomical_structure ,Hypospadias ,Karyotyping ,Pediatrics, Perinatology and Child Health ,Autoradiography ,Female ,Sacral dimple ,medicine.symptom ,business - Abstract
Five patients are described with a partial deletion of the short arm of a chromosome No. 4, which was identified autoradiographically. The 4p- syndrome can be distinguished from the cri du chat (5p-) syndrome by the absence of a catlike cry and the presence of a lower birth weight, more marked psychomotor retardation, a flat beaked nose with a fish-shaped mouth, seizures, cleft palate, coloboma of the iris, preauricular or sacral dimple or sinus, hypospadias, midline scalp defect, underdeveloped dermal ridges on palm and sole, lower finger ridge count, and delayed bone maturation.
- Published
- 1970
419. Tomato domestication rather than subsequent breeding events reduces microbial associations related to phosphorus recovery
- Author
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Mary M. Dixon, Antisar Afkairin, Jessica G. Davis, Jessica Chitwood-Brown, Cassidy M. Buchanan, James A. Ippolito, Daniel K. Manter, and Jorge M. Vivanco
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Tomato ,Phosphorus recovery ,Domestication ,Phosphorus solubilizing bacteria ,Medicine ,Science - Abstract
Abstract Legacy phosphorus (P) is a reservoir of sparingly available P, and its recovery could enhance sustainable use of nonrenewable mineral fertilizers. Domestication has affected P acquisition, but it is unknown if subsequent breeding efforts, like the Green Revolution (GR), had a similar effect. We examined how domestication and breeding events altered P acquisition by growing wild, traditional (pre-GR), and modern (post-GR) tomato in soil with legacy P but low bioavailable P. Wild tomatoes, particularly accession LA0716 (Solanum pennellii), heavily cultured rhizosphere P solubilizers, suggesting reliance on microbial associations to acquire P. Wild tomato also had a greater abundance of other putatively beneficial bacteria, including those that produce chelating agents and antibiotic compounds. Although wild tomatoes had a high abundance of these P solubilizers, they had lower relative biomass and greater P stress factor than traditional or modern tomato. Compared to wild tomato, domesticated tomato was more tolerant to P deficiency, and both cultivated groups had a similar rhizosphere bacterial community composition. Ultimately, this study suggests that while domestication changed tomato P recovery by reducing microbial associations, subsequent breeding processes have not further impacted microbial P acquisition mechanisms. Selecting microbial P-related traits that diminished with domestication may therefore increase legacy P solubilization.
- Published
- 2024
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420. Humour in Chinese life and culture: Resistance and control in modern times
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Jessica Milner Davis and Jocelyn Chey
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Literature ,business.industry ,media_common.quotation_subject ,Resistance (psychoanalysis) ,Art ,Control (linguistics) ,business ,media_common
421. Defining parody and satire
- Author
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Conal Condren, Jessica Milner Davis, Sally McCausland, and Robert Phiddian
422. Comparison of dairy manure versus compost effects on short‐term nitrogen mineralization and microbial biomass in organic annual forage production system
- Author
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Tunsisa T. Hurisso, Jessica G. Davis, Frank H. Stonaker, Daniel A. Goldhamer, and Joe E. Brummer
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Agriculture ,Environmental sciences ,GE1-350 - Abstract
Abstract Since the adoption of national rules for organic agriculture in the United States, there has been a continued interest in meeting crop nitrogen (N) needs using animal manure. However, a lack of consistent information on the N supplying potential of manure creates uncertainty for farmers and often leads to overapplication, which can negatively impact both crop productivity and environmental sustainability. We investigated short‐term N mineralization and microbial biomass carbon (MBC) and nitrogen (MBN) following dairy manure (DM) and its compost (DMC) application to organic annual forage production system. N mineralization was determined based on the change in mineral N during a ≤75‐day in‐field soil core‐resin bag incubation. DM and DMC application rates were targeted to supply 123 and 56 kg potentially plant‐available nitrogen (PAN) ha−1 in the first and second year of application, respectively. Net N mineralization exhibited a range of 42–277 kg N ha−1 in Year 1 and 31–54 kg N ha−1 in Year 2 across amendment treatments and increased over the course of incubation duration in both years. The proportion of total N added that was mineralized in Year 1 was greater from DM than DMC (≤35% vs. ≤7%, respectively), suggesting the inability of DMC to supply optimal levels of N to annual forages in the first crop season. In Year 2, net N mineralization did not differ between DM and DMC, but was significantly less in the unamended control than both amendments. MBC and MBN were more influenced by seasonality and soil sampling depth than by organic amendments.
- Published
- 2024
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423. Legislating science
- Author
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Jessica G, Davis
- Subjects
Value of Life ,Sociology and Political Science ,Genetic Diseases, Inborn ,Individuality ,Legislation as Topic ,General Social Sciences ,Abortion, Induced ,Federal Government ,Personhood ,Fetus ,Life ,Pregnancy ,Government ,Prenatal Diagnosis ,Civil Rights ,Humans ,Pregnant Women ,Social Change ,Beginning of Human Life ,Abortion, Eugenic - Published
- 1982
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424. Chromosomal mosaicism in amniotic fluid cell cultures
- Author
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Marian Krauss, Edmund C. Jenkins, Nataline B. Kardon, Staten Island, and Jessica G. Davis
- Subjects
medicine.medical_specialty ,Pregnancy ,Amniotic fluid ,Amniotic fluid cells ,Obstetrics ,business.industry ,Genetic counseling ,Pediatrics, Perinatology and Child Health ,medicine ,Prenatal diagnosis ,business ,medicine.disease - Published
- 1977
- Full Text
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425. Compact zinc finger architecture utilizing toxin-derived cytidine deaminases for highly efficient base editing in human cells
- Author
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Friedrich Fauser, Bhakti N. Kadam, Sebastian Arangundy-Franklin, Jessica E. Davis, Vishvesha Vaidya, Nicola J. Schmidt, Garrett Lew, Danny F. Xia, Rakshaa Mureli, Colman Ng, Yuanyue Zhou, Nicholas A. Scarlott, Jason Eshleman, Yuri R. Bendaña, David A. Shivak, Andreas Reik, Patrick Li, Gregory D. Davis, and Jeffrey C. Miller
- Subjects
Science - Abstract
Abstract Nucleobase editors represent an emerging technology that enables precise single-base edits to the genomes of eukaryotic cells. Most nucleobase editors use deaminase domains that act upon single-stranded DNA and require RNA-guided proteins such as Cas9 to unwind the DNA prior to editing. However, the most recent class of base editors utilizes a deaminase domain, DddAtox, that can act upon double-stranded DNA. Here, we target DddAtox fragments and a FokI-based nickase to the human CIITA gene by fusing these domains to arrays of engineered zinc fingers (ZFs). We also identify a broad variety of Toxin-Derived Deaminases (TDDs) orthologous to DddAtox that allow us to fine-tune properties such as targeting density and specificity. TDD-derived ZF base editors enable up to 73% base editing in T cells with good cell viability and favorable specificity.
- Published
- 2024
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426. De novo trisomy 9pter?q13
- Author
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Edmund C. Jenkins, Nataline B. Kardon, Helen R. Salwen, Marian Krauss, and Jessica G. Davis
- Subjects
Pathology ,medicine.medical_specialty ,Genetics ,medicine ,Urogenital Abnormality ,Biology ,Metabolic disease ,Trisomy ,medicine.disease ,Molecular medicine ,Genetics (clinical) ,Human genetics - Abstract
A case of de novo trisomy 9p was observed. Cytogenetic analysis of G-, R-, Q-, and C-banded preparations revealed a karyotypic description of 47,XY,+del(9)(pter→q13). In addition to the principal characteristics of the 9p trisomy syndrome, the child presented with skeletal and urogenital abnormalities. It appears that certain clinical abnormalities are due to trisomy of 9q1.
- Published
- 1977
- Full Text
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427. A multiscale modeling framework for Scenario Modeling: Characterizing the heterogeneity of the COVID-19 epidemic in the US
- Author
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Matteo Chinazzi, Jessica T. Davis, Ana Pastore y Piontti, Kunpeng Mu, Nicolò Gozzi, Marco Ajelli, Nicola Perra, and Alessandro Vespignani
- Subjects
Metapopulation dynamics ,Multi-strain epidemic modeling ,COVID-19 pandemic ,Infectious and parasitic diseases ,RC109-216 - Abstract
The Scenario Modeling Hub (SMH) initiative provides projections of potential epidemic scenarios in the United States (US) by using a multi-model approach. Our contribution to the SMH is generated by a multiscale model that combines the global epidemic metapopulation modeling approach (GLEAM) with a local epidemic and mobility model of the US (LEAM-US), first introduced here. The LEAM-US model consists of 3142 subpopulations each representing a single county across the 50 US states and the District of Columbia, enabling us to project state and national trajectories of COVID-19 cases, hospitalizations, and deaths under different epidemic scenarios. The model is age-structured, and multi-strain. It integrates data on vaccine administration, human mobility, and non-pharmaceutical interventions. The model contributed to all 17 rounds of the SMH, and allows for the mechanistic characterization of the spatio-temporal heterogeneities observed during the COVID-19 pandemic. Here we describe the mathematical and computational structure of our model, and present the results concerning the emergence of the SARS-CoV-2 Alpha variant (lineage designation B.1.1.7) as a case study. Our findings show considerable spatial and temporal heterogeneity in the introduction and diffusion of the Alpha variant, both at the level of individual states and combined statistical areas, as it competes against the ancestral lineage. We discuss the key factors driving the time required for the Alpha variant to rise to dominance within a population, and quantify the impact that the emergence of the Alpha variant had on the effective reproduction number at the state level. Overall, we show that our multiscale modeling approach is able to capture the complexity and heterogeneity of the COVID-19 pandemic response in the US.
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- 2024
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428. Challenges of COVID-19 Case Forecasting in the US, 2020-2021.
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Velma K Lopez, Estee Y Cramer, Robert Pagano, John M Drake, Eamon B O'Dea, Madeline Adee, Turgay Ayer, Jagpreet Chhatwal, Ozden O Dalgic, Mary A Ladd, Benjamin P Linas, Peter P Mueller, Jade Xiao, Johannes Bracher, Alvaro J Castro Rivadeneira, Aaron Gerding, Tilmann Gneiting, Yuxin Huang, Dasuni Jayawardena, Abdul H Kanji, Khoa Le, Anja Mühlemann, Jarad Niemi, Evan L Ray, Ariane Stark, Yijin Wang, Nutcha Wattanachit, Martha W Zorn, Sen Pei, Jeffrey Shaman, Teresa K Yamana, Samuel R Tarasewicz, Daniel J Wilson, Sid Baccam, Heidi Gurung, Steve Stage, Brad Suchoski, Lei Gao, Zhiling Gu, Myungjin Kim, Xinyi Li, Guannan Wang, Lily Wang, Yueying Wang, Shan Yu, Lauren Gardner, Sonia Jindal, Maximilian Marshall, Kristen Nixon, Juan Dent, Alison L Hill, Joshua Kaminsky, Elizabeth C Lee, Joseph C Lemaitre, Justin Lessler, Claire P Smith, Shaun Truelove, Matt Kinsey, Luke C Mullany, Kaitlin Rainwater-Lovett, Lauren Shin, Katharine Tallaksen, Shelby Wilson, Dean Karlen, Lauren Castro, Geoffrey Fairchild, Isaac Michaud, Dave Osthus, Jiang Bian, Wei Cao, Zhifeng Gao, Juan Lavista Ferres, Chaozhuo Li, Tie-Yan Liu, Xing Xie, Shun Zhang, Shun Zheng, Matteo Chinazzi, Jessica T Davis, Kunpeng Mu, Ana Pastore Y Piontti, Alessandro Vespignani, Xinyue Xiong, Robert Walraven, Jinghui Chen, Quanquan Gu, Lingxiao Wang, Pan Xu, Weitong Zhang, Difan Zou, Graham Casey Gibson, Daniel Sheldon, Ajitesh Srivastava, Aniruddha Adiga, Benjamin Hurt, Gursharn Kaur, Bryan Lewis, Madhav Marathe, Akhil Sai Peddireddy, Przemyslaw Porebski, Srinivasan Venkatramanan, Lijing Wang, Pragati V Prasad, Jo W Walker, Alexander E Webber, Rachel B Slayton, Matthew Biggerstaff, Nicholas G Reich, and Michael A Johansson
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Biology (General) ,QH301-705.5 - Abstract
During the COVID-19 pandemic, forecasting COVID-19 trends to support planning and response was a priority for scientists and decision makers alike. In the United States, COVID-19 forecasting was coordinated by a large group of universities, companies, and government entities led by the Centers for Disease Control and Prevention and the US COVID-19 Forecast Hub (https://covid19forecasthub.org). We evaluated approximately 9.7 million forecasts of weekly state-level COVID-19 cases for predictions 1-4 weeks into the future submitted by 24 teams from August 2020 to December 2021. We assessed coverage of central prediction intervals and weighted interval scores (WIS), adjusting for missing forecasts relative to a baseline forecast, and used a Gaussian generalized estimating equation (GEE) model to evaluate differences in skill across epidemic phases that were defined by the effective reproduction number. Overall, we found high variation in skill across individual models, with ensemble-based forecasts outperforming other approaches. Forecast skill relative to the baseline was generally higher for larger jurisdictions (e.g., states compared to counties). Over time, forecasts generally performed worst in periods of rapid changes in reported cases (either in increasing or decreasing epidemic phases) with 95% prediction interval coverage dropping below 50% during the growth phases of the winter 2020, Delta, and Omicron waves. Ideally, case forecasts could serve as a leading indicator of changes in transmission dynamics. However, while most COVID-19 case forecasts outperformed a naïve baseline model, even the most accurate case forecasts were unreliable in key phases. Further research could improve forecasts of leading indicators, like COVID-19 cases, by leveraging additional real-time data, addressing performance across phases, improving the characterization of forecast confidence, and ensuring that forecasts were coherent across spatial scales. In the meantime, it is critical for forecast users to appreciate current limitations and use a broad set of indicators to inform pandemic-related decision making.
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- 2024
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429. Potential impact of annual vaccination with reformulated COVID-19 vaccines: Lessons from the US COVID-19 scenario modeling hub.
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Sung-Mok Jung, Sara L Loo, Emily Howerton, Lucie Contamin, Claire P Smith, Erica C Carcelén, Katie Yan, Samantha J Bents, John Levander, Jessi Espino, Joseph C Lemaitre, Koji Sato, Clifton D McKee, Alison L Hill, Matteo Chinazzi, Jessica T Davis, Kunpeng Mu, Alessandro Vespignani, Erik T Rosenstrom, Sebastian A Rodriguez-Cartes, Julie S Ivy, Maria E Mayorga, Julie L Swann, Guido España, Sean Cavany, Sean M Moore, T Alex Perkins, Shi Chen, Rajib Paul, Daniel Janies, Jean-Claude Thill, Ajitesh Srivastava, Majd Al Aawar, Kaiming Bi, Shraddha Ramdas Bandekar, Anass Bouchnita, Spencer J Fox, Lauren Ancel Meyers, Przemyslaw Porebski, Srini Venkatramanan, Aniruddha Adiga, Benjamin Hurt, Brian Klahn, Joseph Outten, Jiangzhuo Chen, Henning Mortveit, Amanda Wilson, Stefan Hoops, Parantapa Bhattacharya, Dustin Machi, Anil Vullikanti, Bryan Lewis, Madhav Marathe, Harry Hochheiser, Michael C Runge, Katriona Shea, Shaun Truelove, Cécile Viboud, and Justin Lessler
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Medicine - Abstract
BackgroundCoronavirus Disease 2019 (COVID-19) continues to cause significant hospitalizations and deaths in the United States. Its continued burden and the impact of annually reformulated vaccines remain unclear. Here, we present projections of COVID-19 hospitalizations and deaths in the United States for the next 2 years under 2 plausible assumptions about immune escape (20% per year and 50% per year) and 3 possible CDC recommendations for the use of annually reformulated vaccines (no recommendation, vaccination for those aged 65 years and over, vaccination for all eligible age groups based on FDA approval).Methods and findingsThe COVID-19 Scenario Modeling Hub solicited projections of COVID-19 hospitalization and deaths between April 15, 2023 and April 15, 2025 under 6 scenarios representing the intersection of considered levels of immune escape and vaccination. Annually reformulated vaccines are assumed to be 65% effective against symptomatic infection with strains circulating on June 15 of each year and to become available on September 1. Age- and state-specific coverage in recommended groups was assumed to match that seen for the first (fall 2021) COVID-19 booster. State and national projections from 8 modeling teams were ensembled to produce projections for each scenario and expected reductions in disease outcomes due to vaccination over the projection period. From April 15, 2023 to April 15, 2025, COVID-19 is projected to cause annual epidemics peaking November to January. In the most pessimistic scenario (high immune escape, no vaccination recommendation), we project 2.1 million (90% projection interval (PI) [1,438,000, 4,270,000]) hospitalizations and 209,000 (90% PI [139,000, 461,000]) deaths, exceeding pre-pandemic mortality of influenza and pneumonia. In high immune escape scenarios, vaccination of those aged 65+ results in 230,000 (95% confidence interval (CI) [104,000, 355,000]) fewer hospitalizations and 33,000 (95% CI [12,000, 54,000]) fewer deaths, while vaccination of all eligible individuals results in 431,000 (95% CI: 264,000-598,000) fewer hospitalizations and 49,000 (95% CI [29,000, 69,000]) fewer deaths.ConclusionsCOVID-19 is projected to be a significant public health threat over the coming 2 years. Broad vaccination has the potential to substantially reduce the burden of this disease, saving tens of thousands of lives each year.
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- 2024
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430. Early, precise, and safe clinical evaluation of the pharmacodynamic effects of novel agents in the intact human tumor microenvironment
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Kenneth R. Gundle, Karthik Rajasekaran, Jeffrey Houlton, Gary B. Deutsch, Thomas J. Ow, Robert G. Maki, John Pang, Cherie-Ann O. Nathan, Daniel Clayburgh, Jason G. Newman, Elyse Brinkmann, Michael J. Wagner, Seth M. Pollack, Matthew J. Thompson, Ryan J. Li, Vikas Mehta, Bradley A. Schiff, Barry I. Wenig, Paul L. Swiecicki, Alice L. Tang, Jessica L. Davis, Annemieke van Zante, Jessica A. Bertout, Wendy Jenkins, Atticus Turner, Marc Grenley, Connor Burns, Jason P. Frazier, Angela Merrell, Kimberly H. W. Sottero, Jonathan M. J. Derry, Kate C. Gillespie, Bre Mills, and Richard A. Klinghoffer
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phase 0 ,intratumoral microdosing ,spatial profiling ,multidrug analyses ,pharmacodynamics ,tumor microenvironment ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Introduction: Drug development is systemically inefficient. Research and development costs for novel therapeutics average hundreds of millions to billions of dollars, with the overall likelihood of approval estimated to be as low as 6.7% for oncology drugs. Over half of these failures are due to a lack of drug efficacy. This pervasive and repeated low rate of success exemplifies how preclinical models fail to adequately replicate the complexity and heterogeneity of human cancer. Therefore, new methods of evaluation, early in the development trajectory, are essential both to rule-in and rule-out novel agents with more rigor and speed, but also to spare clinical trial patients from the potentially toxic sequelae (high risk) of testing investigational agents that have a low likelihood of producing a response (low benefit).Methods: The clinical in vivo oncology (CIVO®) platform was designed to change this drug development paradigm. CIVO precisely delivers microdose quantities of up to 8 drugs or combinations directly into patient tumors 4–96 h prior to planned surgical resection. Resected tissue is then analyzed for responses at each site of intratumoral drug exposure.Results: To date, CIVO has been used safely in 6 clinical trials, including 68 subjects, with 5 investigational and 17 approved agents. Resected tissues were analyzed initially using immunohistochemistry and in situ hybridization assays (115 biomarkers). As technology advanced, the platform was paired with spatial biology analysis platforms, to successfully track anti-neoplastic and immune-modulating activity of the injected agents in the intact tumor microenvironment.Discussion: Herein we provide a report of the use of CIVO technology in patients, a depiction of the robust analysis methods enabled by this platform, and a description of the operational and regulatory mechanisms used to deploy this approach in synergistic partnership with pharmaceutical partners. We further detail how use of the CIVO platform is a clinically safe and scientifically precise alternative or complement to preclinical efficacy modeling, with outputs that inform, streamline, and de-risk drug development.
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- 2024
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431. Anterior mediastinal neuroblastoma in an adult: an additional case of a rare tumor in an unusual location with review of the literature
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Katrina Collins, Thomas M. Ulbright, and Jessica L. Davis
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Adult ,Anterior mediastinum ,Neuroblastoma ,Thymus ,Pathology ,RB1-214 - Abstract
Abstract Neuroblastoma is rare in the adult population, especially in thoracic or mediastinal locations, with only 25 previously reported cases. We report an additional example of primary thymic neuroblastoma in a previously asymptomatic 71-year-old man with an anterior mediastinal mass who underwent robotic excision with pericardium and adjacent lung. The tumor was a 5.2 cm partially encapsulated, white-tan and rubbery mass with grossly identifiable areas of necrosis (25%) and hemorrhage. Histologically, the specimen showed a rim of adipose tissue and residual thymic tissue with areas of cystic thymic epithelium and prominent lymphoid tissue containing Hassall’s corpuscles. The tumor was composed of uniform, round cells with scant cytoplasm and small nuclei with inconspicuous nucleoli set within a background of conspicuous neuropil. Mitotic figures were easily found. By immunohistochemistry, the tumor cells expressed synaptophysin, chromogranin, NKX2.2 (diffuse, nuclear), GFAP (patchy), SMI31 (neurofilament) (focal, cytoplasmic), and TdT (diffuse, nuclear), while lacking expression of CD99, TTF-1, CK 20, MCPyV, PHOX2B, Olig2, OCT3/4, CD45, CD3 and PAX5. S100 protein was negative in the neuroblastic cells, with scattered positive cells in a vague sustentacular-like pattern. Fluorescence in situ hybridization for isochromosome 12p and EWSR1 gene rearrangement were negative. As thymic neuroblastoma is extremely rare in adults, a neuroblastic tumor of germ cell origin (either primary or metastatic) or spread from a sinonasal tract tumor should be excluded because of differing treatments and prognoses. The properties of these rare neoplasms appear similar to olfactory neuroblastoma rather than pediatric-type neuroblastoma.
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- 2023
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432. Evaluation of the US COVID-19 Scenario Modeling Hub for informing pandemic response under uncertainty
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Emily Howerton, Lucie Contamin, Luke C. Mullany, Michelle Qin, Nicholas G. Reich, Samantha Bents, Rebecca K. Borchering, Sung-mok Jung, Sara L. Loo, Claire P. Smith, John Levander, Jessica Kerr, J. Espino, Willem G. van Panhuis, Harry Hochheiser, Marta Galanti, Teresa Yamana, Sen Pei, Jeffrey Shaman, Kaitlin Rainwater-Lovett, Matt Kinsey, Kate Tallaksen, Shelby Wilson, Lauren Shin, Joseph C. Lemaitre, Joshua Kaminsky, Juan Dent Hulse, Elizabeth C. Lee, Clifton D. McKee, Alison Hill, Dean Karlen, Matteo Chinazzi, Jessica T. Davis, Kunpeng Mu, Xinyue Xiong, Ana Pastore y Piontti, Alessandro Vespignani, Erik T. Rosenstrom, Julie S. Ivy, Maria E. Mayorga, Julie L. Swann, Guido España, Sean Cavany, Sean Moore, Alex Perkins, Thomas Hladish, Alexander Pillai, Kok Ben Toh, Ira Longini, Shi Chen, Rajib Paul, Daniel Janies, Jean-Claude Thill, Anass Bouchnita, Kaiming Bi, Michael Lachmann, Spencer J. Fox, Lauren Ancel Meyers, Ajitesh Srivastava, Przemyslaw Porebski, Srini Venkatramanan, Aniruddha Adiga, Bryan Lewis, Brian Klahn, Joseph Outten, Benjamin Hurt, Jiangzhuo Chen, Henning Mortveit, Amanda Wilson, Madhav Marathe, Stefan Hoops, Parantapa Bhattacharya, Dustin Machi, Betsy L. Cadwell, Jessica M. Healy, Rachel B. Slayton, Michael A. Johansson, Matthew Biggerstaff, Shaun Truelove, Michael C. Runge, Katriona Shea, Cécile Viboud, and Justin Lessler
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Science - Abstract
Abstract Our ability to forecast epidemics far into the future is constrained by the many complexities of disease systems. Realistic longer-term projections may, however, be possible under well-defined scenarios that specify the future state of critical epidemic drivers. Since December 2020, the U.S. COVID-19 Scenario Modeling Hub (SMH) has convened multiple modeling teams to make months ahead projections of SARS-CoV-2 burden, totaling nearly 1.8 million national and state-level projections. Here, we find SMH performance varied widely as a function of both scenario validity and model calibration. We show scenarios remained close to reality for 22 weeks on average before the arrival of unanticipated SARS-CoV-2 variants invalidated key assumptions. An ensemble of participating models that preserved variation between models (using the linear opinion pool method) was consistently more reliable than any single model in periods of valid scenario assumptions, while projection interval coverage was near target levels. SMH projections were used to guide pandemic response, illustrating the value of collaborative hubs for longer-term scenario projections.
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- 2023
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433. Assessing Salinity Tolerance in Pinto Bean Varieties: Implications for Sustainable Agriculture
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Winie S. Paul, Antisar Afkairin, Allan A. Andales, Yaling Qian, and Jessica G. Davis
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salinity ,pulse crops ,salt concentration ,germination ,electrical conductivity ,Agriculture - Abstract
Salinity is an abiotic stress restricting agricultural crop production globally, in which salts inhibit plants’ ability to absorb water and nutrients. Pinto beans (Phaseolus vulgaris L.) are very important in human nutrition and are sensitive to salinity. The objective of this study was to assess the salinity tolerance of six pinto bean varieties by evaluating the effect of different salt types on germination and growth. In the germination experiment, varieties were arranged in a randomized complete block design with five replications and three saline solutions (NaCl, CaCl2, MgSO4·7H2O) at 0, 0.05 M, 0.1 M, and 0.15 M concentrations each. For the greenhouse experiment, saline solutions with the same EC (5 dS m−1), control (distilled water), and six pinto bean varieties were organized in a Complete Random Design with 10 replicates. The results demonstrated that germination percentage, speed of germination, and hypocotyl length decreased as salt concentrations increased. Othello’s vegetative and reproductive parameters were significantly higher compared to the other varieties under saline conditions; its early maturity may have enabled it to perform better under salt stress. In addition to soil and water management, selecting salt-tolerant crops and varieties is essential to maintaining agricultural sustainability in regions undergoing salinization.
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- 2024
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434. Beyond Soil Inoculation: Cyanobacteria as a Fertilizer Replacement
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Michael S. Massey and Jessica G. Davis
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biological N fixation ,Haber–Bosch process ,cyanobacteria ,Ecology ,QH540-549.5 - Abstract
Nitrogen-fixing bacteria such as cyanobacteria have the capability to fix atmospheric nitrogen at ambient temperature and pressure, and intensive cultivation of cyanobacteria for fertilizer could lead to its use as an “environmentally friendly” replacement or supplement for nitrogen (N) fertilizer derived from the Haber–Bosch process. Prior research has focused on the use of N-fixing bacteria as a soil inoculum, and while this can improve crop yields, yield improvements are generally attributed to plant-growth-promoting substances produced by the bacteria, rather than to biological N fixation. The intensive cultivation of cyanobacteria in raceways or bioreactors can result in a fertilizer that provides N and organic carbon, as well as potentially similar growth-promoting substances observed in prior research work. On-farm or local production of cyanobacterial fertilizer could also circumvent infrastructure limitations, economic and geopolitical issues, and challenges in distribution and transport related to Haber–Bosch-derived N fertilizers. The use of cyanobacterial N fertilizer could have many agronomic and environmental advantages over N fertilizer derived from the Haber–Bosch process, but study of cyanobacteria as a replacement for other N fertilizers remains very limited. Scientific and practical challenges remain for this promising but as-yet unproven approach to maintaining or improving soil N fertility.
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- 2023
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435. Ensemble2: Scenarios ensembling for communication and performance analysis
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Clara Bay, Guillaume St-Onge, Jessica T. Davis, Matteo Chinazzi, Emily Howerton, Justin Lessler, Michael C. Runge, Katriona Shea, Shaun Truelove, Cecile Viboud, and Alessandro Vespignani
- Subjects
Ensemble method ,Scenario projections ,COVID-19 models ,Infectious and parasitic diseases ,RC109-216 - Abstract
Throughout the COVID-19 pandemic, scenario modeling played a crucial role in shaping the decision-making process of public health policies. Unlike forecasts, scenario projections rely on specific assumptions about the future that consider different plausible states-of-the-world that may or may not be realized and that depend on policy interventions, unpredictable changes in the epidemic outlook, etc. As a consequence, long-term scenario projections require different evaluation criteria than the ones used for traditional short-term epidemic forecasts. Here, we propose a novel ensemble procedure for assessing pandemic scenario projections using the results of the Scenario Modeling Hub (SMH) for COVID-19 in the United States (US). By defining a “scenario ensemble” for each model and the ensemble of models, termed “Ensemble2”, we provide a synthesis of potential epidemic outcomes, which we use to assess projections’ performance, bypassing the identification of the most plausible scenario. We find that overall the Ensemble2 models are well-calibrated and provide better performance than the scenario ensemble of individual models. The ensemble procedure accounts for the full range of plausible outcomes and highlights the importance of scenario design and effective communication. The scenario ensembling approach can be extended to any scenario design strategy, with potential refinements including weighting scenarios and allowing the ensembling process to evolve over time.
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- 2024
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436. High Velocity Passive Stretching Mimics Eccentric Exercise in Cerebral Palsy and May Be Used to Increase Spastic Muscle Fascicle Length
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Jessica F. Davis, Tahir Khan, Matt Thornton, Neil D. Reeves, Mara DeLuca, and Amir A. Mohagheghi
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cerebral palsy ,eccentric ,fascicle length ,Technology ,Biology (General) ,QH301-705.5 - Abstract
Muscle fascicles are shorter and stiffer than normal in spastic Cerebral Palsy (CP). Increasing fascicle length (FL) has been attempted in CP, the outcomes of which have been unsatisfactory. In healthy muscles, FL can be increased using eccentric exercise at high velocities (ECC). Three conditions are possibly met during such ECC: muscle micro-damage, positive fascicle strain, and momentary muscle deactivation during lengthening. Participants with and without CP underwent a single bout of passive stretching at (appropriately) high velocities using isokinetic dynamometry, during which we examined muscle and fascicle behaviour. Vastus lateralis (VL) FL change was measured using ultrasonography and showed positive fascicle strain. Measures of muscle creatine kinase were used to establish whether micro-damage occurred in response to stretching, but the results did not confirm damage in either group. Vastus medialis (VM) and biceps femoris muscle activity were measured using electromyography in those with CP. Results supported momentary spastic muscle deactivation during lengthening: all participants experienced at least one epoch (60 ms) of increased activation followed by activation inhibition/deactivation of the VM during knee flexion. We argue that high-velocity passive stretching in CP provides a movement context which mimics ECC and could be used to increase spastic FL with training.
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- 2024
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437. Fish Emulsions, Cyano-Fertilizer, and Seaweed Extracts Affect Bell Pepper (Capsicum annuum L.) Plant Architecture, Yield, and Fruit Quality
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Allison Wickham and Jessica G. Davis
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organic fertilizer ,Capsicum annuum L. ,cyanobacteria ,hydrolyzed fish emulsion ,non-hydrolyzed fish emulsion ,seaweed ,Plant culture ,SB1-1110 - Abstract
Bell peppers (Capsicum annuum) were grown in a greenhouse to evaluate organic fertilizer and foliar seaweed application effects on plant architecture, yield, and fruit quality. Many organic fertilizers contain phytohormones intrinsically. Hydrolyzed and non-hydrolyzed fish fertilizer and cyano-fertilizer treatments were applied in split applications every 7 days over a 135-day growing period. Control plants received no supplemental N. Each fertilizer treatment received applications of one of two different foliar seaweeds or no foliar seaweed in a 4 × 3 factorial design with three replications. Both hydrolyzed and non-hydrolyzed fish fertilizers and cyano-fertilizer increased the number of branches per plant compared to the N-deficient control. The plants receiving cyano-fertilizer or non-hydrolyzed fish fertilizer yielded more than the N-deficient control, and those treatments received 2–3 times the auxin application as the hydrolyzed fish fertilizer. In addition, the leaves from the plants treated with non-hydrolyzed fish fertilizer contained substantially higher levels of abscisic acid, although no abscisic acid was detected in the fertilizers. Both seaweed products decreased the number of fruits that were “bell”-shaped and increased the number of “long”-shaped fruits. Organic fertilizers are complex matrices of nutrients, phytohormones, and other metabolites, making it very challenging to determine the mechanisms behind the observations.
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- 2024
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438. Harnessing Phosphorous (P) Fertilizer-Insensitive Bacteria to Enhance Rhizosphere P Bioavailability in Legumes
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Antisar Afkairin, Mary M. Dixon, Cassidy Buchanan, James A. Ippolito, Daniel K. Manter, Jessica G. Davis, and Jorge M. Vivanco
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legume ,phosphorus bioavailability ,phosphorus-insensitive ,phosphorus ,rhizosphere microbiome ,Biology (General) ,QH301-705.5 - Abstract
Phosphorous (P) is widely used in agriculture; yet, P fertilizers are a nonrenewable resource. Thus, mechanisms to improve soil P bioavailability need to be found. Legumes are efficient in P acquisition and, therefore, could be used to develop new technologies to improve soil P bioavailability. Here, we studied different species and varieties of legumes and their rhizosphere microbiome responses to low-P stress. Some varieties of common beans, cowpeas, and peas displayed a similar biomass with and without P fertilization. The rhizosphere microbiome of those varieties grown without P was composed of unique microbes displaying different levels of P solubilization and mineralization. When those varieties were amended with P, some of the microbes involved in P solubilization and mineralization decreased in abundance, but other microbes were insensitive to P fertilization. The microbes that decreased in abundance upon P fertilization belonged to groups that are commonly used as biofertilizers such as Pseudomonas and Azospirillum. The microbes that were not affected by P fertilization constitute unique species involved in P mineralization such as Arenimonas daejeonensis, Hyphomicrobium hollandicum, Paenibacillus oenotherae, and Microlunatus speluncae. These P-insensitive microbes could be used to optimize P utilization and drive future sustainable agricultural practices to reduce human dependency on a nonrenewable resource.
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- 2024
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439. Childhood apraxia of speech, oral motor apraxia, and velopharyngeal insufficiency in a young woman with a de novo pathogenic variant in the ZNF292 gene
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Jessica M. Davis and Deborah L. Renaud
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autism spectrum disorder ,childhood apraxia of speech ,oral motor apraxia ,speech delay ,velopharyngeal insufficiency ,ZNF292 ,Neurology. Diseases of the nervous system ,RC346-429 ,Pediatrics ,RJ1-570 - Published
- 2023
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440. Book review
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Jessica Milner Davis
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Japanese comedy ,rakugo ,Osaka ,Language and Literature - Abstract
Book review
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- 2023
441. NUT carcinoma: A rare presentation of a chest mass with hypercalcemia in a pediatric patient
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Amanda K. Johnson, Travis Johnson, Katrina Winsnes, and Jessica L. Davis
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Carcinoma ,NUT carcinoma ,Pediatric carcinoma ,Pathology ,RB1-214 - Abstract
The most common etiologies for chest masses in children include neurogenic tumors, germ cell tumors, leukemia/lymphoma and cysts [1]. Hypercalcemia of malignancy can complicate the clinical course, but is rare in children and most likely to occur in leukemia [2]. The following case illustrates a rare malignancy, NUT carcinoma, presenting as a mediastinal mass in a pediatric patient. The patient developed hypercalcemia, which further complicated the diagnosis. Due to the rapidly progressive nature of this malignancy as well as diagnostic challenges, the patient’s malignancy was not formally diagnosed until post-mortem autopsy molecular testing. This report adds to the body of literature of this rare tumor to assist with diagnosis, management, and treatment for future patients.
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- 2023
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442. Science, fiction, and Santa Claus: Hollywood creator and consultant perceptions of fictional science in film and television
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Jessica L. Davis, Gianna Savoie, and Nancy Longnecker
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science communication ,Hollywood ,film and television ,fiction ,narrative ,science ,Communication. Mass media ,P87-96 - Abstract
IntroductionFrom the high-stakes operating room of a Seattle hospital, to the shattered remains of a planet in a galaxy far, far away, Hollywood is often critiqued for its representations of scientific knowledge, methods, and/or technology. Existing research into Hollywood representations of science focuses primarily on those that do not align with expert consensus, and on how audiences engage with these representations — such as how misinformation in fictional narratives influences us. This paper, instead, approaches the matter of fictional science in fictional narratives (FiSci) from the perspectives of the individuals creating Hollywood content. We use the label of “FiSci” for any representation of science within a narrative which does not align with humanity's current knowledge or technological capability.MethodsSemi-structured interviews were conducted in late 2020 with a purposefully-selected sample of both Hollywood creators (writers, directors, and producers; n = 28) and science experts who have served as consultants (n = 18) across a range of film and television projects. Thematic analysis was used to explore how these creators and consultants perceive FiSci and its role within Hollywood narratives. Three themes were constructed from the interview data.Results and discussionParticipants primarily spoke of FiSci as: (1) a storytelling tool, perceived either positively or negatively, depending upon how that tool is wielded; (2) a way to play within a constructed storyworld which does not resemble our own; and (3) a source of unrealistic “B.S.” which threatens to break audience suspension of disbelief and can signify a lack of effort in the creative process. This paper contributes to science communication research by providing access to minds behind the representations of science in Hollywood film and television. As such, it can be used to aid the creator-consultant relationship and the implementation of FiSci to the benefit of both groups. It may also inform creators who have yet to work with a consultant, experts looking to become consultants, audiences critiquing FiSci in the content they watch, and experts and science communicators who express concerns about the use of FiSci and the responsibilities of Hollywood.
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- 2023
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443. Soil Microbial Community Responses to Cyanobacteria versus Traditional Organic Fertilizers
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Antisar Afkairin, Mary Stromberger, Heather Storteboom, Allison Wickham, David G. Sterle, and Jessica G. Davis
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cyanobacteria ,organic fertilizers ,EL-FAMEs ,Cucumis sativus ,Prunus persica ,Agriculture (General) ,S1-972 - Abstract
This study explores the impact of diverse organic fertilizers, including a non-traditional cyanobacteria-based alternative, on soil microbial communities in varying soil types and depths. The research aims to elucidate the effects of these fertilizers on soil microorganisms in certified organic cucumber (Cucumis sativus) field and peach (Prunus persica) orchard settings. Fertilizers were applied either on the soil surface or banded 5 cm below the soil surface, and microbial ester-linked fatty acids (EL-FAMEs) were analyzed in collected soils. Notably, cyanobacteria and Neptune hydrolyzed fish emulsion fertilizers induced significant alterations in the microbial communities of cucumber plots, enhancing microbial biomass and favoring the proliferation of Gram-negative bacteria, Gram-positive bacteria, and actinomycetes compared to other treatments. In the peach orchard, fertilizer choice differentially impacted microbial communities, especially in the first year and at greater soil depths. Notably, the supplementation of poultry manure with cyanobacteria fertilizer resulted in augmented microbial biomass and relative fungal and arbuscular mycorrhizal fungal abundances compared to poultry manure alone. These shifts have promising implications for organic vegetable and fruit cultivation. The study further underscores the potential of cyanobacteria-based fertilizers to reduce reliance on traditional options and minimize manure application, promoting self-sufficiency and benefiting soil microorganisms, plant growth, and the ecosystem. Thus, the research emphasizes the importance of exploring and adopting cyanobacteria-based fertilizers to bolster sustainable agricultural practices.
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- 2023
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444. Optimizing Organic Carrot (Daucus carota var. sativus) Yield and Quality Using Fish Emulsions, Cyanobacterial Fertilizer, and Seaweed Extracts
- Author
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Allison Wickham and Jessica G. Davis
- Subjects
organic fertilizer ,Daucus carota var. sativus ,Anabaena ,cyanobacteria ,fish emulsion ,seaweed ,Agriculture - Abstract
Liquid fertilizers are often used in the middle of the growing season in an attempt to enhance organic carrot (Daucus carota var. sativus) yield and quality, although their effect on plant performance is unproven. The impact of liquid organic fertilizers and foliar seaweed applications on carrot yield and quality characteristics were evaluated on certified organic land at the Colorado State University Horticulture Field Research Center in Fort Collins, CO, USA, in 2014 and 2015. Hydrolyzed and non-hydrolyzed fish fertilizer and cyanobacterial fertilizer (cyano-fertilizer) treatments were applied through a drip irrigation system at prescribed N rates about every 10 days throughout the growing season. Each treatment, including the unfertilized control, was repeated with the addition of concentrated organic seaweed extract, containing phytohormones, applied foliarly at the manufacturer’s recommended rates. The cyano-fertilizer treatment resulted in longer carrots in 2014 and the highest carrot yield in both years, with it consistently yielding equal to or greater than either hydrolyzed or non-hydrolyzed fish fertilizer. The foliar seaweed applications had no effect on carrot yield in either year. The cyano-fertilizer performed comparably to the other fertilizers, suggesting that cyano-fertilizer could be a viable alternative to organic liquid fish fertilizers.
- Published
- 2023
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445. Organic Nitrogen Fertilizer Selection Influences Water Use Efficiency in Drip-Irrigated Sweet Corn
- Author
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Arina Sukor, Yaling Qian, and Jessica G. Davis
- Subjects
blood meal ,cyanobacteria ,cyano-fertilizer ,feather meal ,fish emulsion ,organic agriculture ,Agriculture (General) ,S1-972 - Abstract
Organic farmers often rely on off-farm nitrogen (N) sources for mid-season N. Farmers can also produce cyano-fertilizer on-farm by growing N-fixing cyanobacteria (Anabaena spp.) in raceways and applying the cyanobacteria through irrigation systems. A two-year field study was conducted, and blood meal, feather meal, fish emulsion, and cyano-fertilizer were evaluated to determine whether the water use efficiency (WUE) of sweet corn (Zea mays) was affected by fertilizer type. Fish emulsion and cyano-fertilizer were supplied in four split applications through drip irrigation, while the blood meal and feather meal were subsurface banded pre-plant. Leaf gas exchange measurements were taken during tasseling. The amounts of phytohormone and Fe applied in organic N fertilizers were correlated with field water use efficiency (fWUE), instantaneous water use efficiency (iWUE), and leaf gas exchange components of sweet corn. A positive relationship was observed between the amount of salicylic acid (SA) applied with both iWUE (r = 0.71, p < 0.05) and fWUE (r = 0.68, p < 0.01). The amount of Fe applied was positively correlated with the leaf vapor pressure deficit (r = 0.54, p < 0.01) and transpiration rate (r = 0.53, p < 0.01). Cyano-fertilizer had the highest yield and WUE, likely due to the high amount of SA applied, although fish emulsion was comparable in year one. These relationships require further exploration to elucidate the mechanisms impacting WUE.
- Published
- 2023
- Full Text
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