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Evaluation of the US COVID-19 Scenario Modeling Hub for informing pandemic response under uncertainty

Authors :
Emily Howerton
Lucie Contamin
Luke C. Mullany
Michelle Qin
Nicholas G. Reich
Samantha Bents
Rebecca K. Borchering
Sung-mok Jung
Sara L. Loo
Claire P. Smith
John Levander
Jessica Kerr
J. Espino
Willem G. van Panhuis
Harry Hochheiser
Marta Galanti
Teresa Yamana
Sen Pei
Jeffrey Shaman
Kaitlin Rainwater-Lovett
Matt Kinsey
Kate Tallaksen
Shelby Wilson
Lauren Shin
Joseph C. Lemaitre
Joshua Kaminsky
Juan Dent Hulse
Elizabeth C. Lee
Clifton D. McKee
Alison Hill
Dean Karlen
Matteo Chinazzi
Jessica T. Davis
Kunpeng Mu
Xinyue Xiong
Ana Pastore y Piontti
Alessandro Vespignani
Erik T. Rosenstrom
Julie S. Ivy
Maria E. Mayorga
Julie L. Swann
Guido España
Sean Cavany
Sean Moore
Alex Perkins
Thomas Hladish
Alexander Pillai
Kok Ben Toh
Ira Longini
Shi Chen
Rajib Paul
Daniel Janies
Jean-Claude Thill
Anass Bouchnita
Kaiming Bi
Michael Lachmann
Spencer J. Fox
Lauren Ancel Meyers
Ajitesh Srivastava
Przemyslaw Porebski
Srini Venkatramanan
Aniruddha Adiga
Bryan Lewis
Brian Klahn
Joseph Outten
Benjamin Hurt
Jiangzhuo Chen
Henning Mortveit
Amanda Wilson
Madhav Marathe
Stefan Hoops
Parantapa Bhattacharya
Dustin Machi
Betsy L. Cadwell
Jessica M. Healy
Rachel B. Slayton
Michael A. Johansson
Matthew Biggerstaff
Shaun Truelove
Michael C. Runge
Katriona Shea
Cécile Viboud
Justin Lessler
Source :
Nature Communications, Vol 14, Iss 1, Pp 1-15 (2023)
Publication Year :
2023
Publisher :
Nature Portfolio, 2023.

Abstract

Abstract Our ability to forecast epidemics far into the future is constrained by the many complexities of disease systems. Realistic longer-term projections may, however, be possible under well-defined scenarios that specify the future state of critical epidemic drivers. Since December 2020, the U.S. COVID-19 Scenario Modeling Hub (SMH) has convened multiple modeling teams to make months ahead projections of SARS-CoV-2 burden, totaling nearly 1.8 million national and state-level projections. Here, we find SMH performance varied widely as a function of both scenario validity and model calibration. We show scenarios remained close to reality for 22 weeks on average before the arrival of unanticipated SARS-CoV-2 variants invalidated key assumptions. An ensemble of participating models that preserved variation between models (using the linear opinion pool method) was consistently more reliable than any single model in periods of valid scenario assumptions, while projection interval coverage was near target levels. SMH projections were used to guide pandemic response, illustrating the value of collaborative hubs for longer-term scenario projections.

Subjects

Subjects :
Science

Details

Language :
English
ISSN :
20411723
Volume :
14
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Nature Communications
Publication Type :
Academic Journal
Accession number :
edsdoj.5d876a0b4405426fa09f24425e85da39
Document Type :
article
Full Text :
https://doi.org/10.1038/s41467-023-42680-x