Back to Search Start Over

Challenges of COVID-19 Case Forecasting in the US, 2020-2021.

Authors :
Velma K Lopez
Estee Y Cramer
Robert Pagano
John M Drake
Eamon B O'Dea
Madeline Adee
Turgay Ayer
Jagpreet Chhatwal
Ozden O Dalgic
Mary A Ladd
Benjamin P Linas
Peter P Mueller
Jade Xiao
Johannes Bracher
Alvaro J Castro Rivadeneira
Aaron Gerding
Tilmann Gneiting
Yuxin Huang
Dasuni Jayawardena
Abdul H Kanji
Khoa Le
Anja Mühlemann
Jarad Niemi
Evan L Ray
Ariane Stark
Yijin Wang
Nutcha Wattanachit
Martha W Zorn
Sen Pei
Jeffrey Shaman
Teresa K Yamana
Samuel R Tarasewicz
Daniel J Wilson
Sid Baccam
Heidi Gurung
Steve Stage
Brad Suchoski
Lei Gao
Zhiling Gu
Myungjin Kim
Xinyi Li
Guannan Wang
Lily Wang
Yueying Wang
Shan Yu
Lauren Gardner
Sonia Jindal
Maximilian Marshall
Kristen Nixon
Juan Dent
Alison L Hill
Joshua Kaminsky
Elizabeth C Lee
Joseph C Lemaitre
Justin Lessler
Claire P Smith
Shaun Truelove
Matt Kinsey
Luke C Mullany
Kaitlin Rainwater-Lovett
Lauren Shin
Katharine Tallaksen
Shelby Wilson
Dean Karlen
Lauren Castro
Geoffrey Fairchild
Isaac Michaud
Dave Osthus
Jiang Bian
Wei Cao
Zhifeng Gao
Juan Lavista Ferres
Chaozhuo Li
Tie-Yan Liu
Xing Xie
Shun Zhang
Shun Zheng
Matteo Chinazzi
Jessica T Davis
Kunpeng Mu
Ana Pastore Y Piontti
Alessandro Vespignani
Xinyue Xiong
Robert Walraven
Jinghui Chen
Quanquan Gu
Lingxiao Wang
Pan Xu
Weitong Zhang
Difan Zou
Graham Casey Gibson
Daniel Sheldon
Ajitesh Srivastava
Aniruddha Adiga
Benjamin Hurt
Gursharn Kaur
Bryan Lewis
Madhav Marathe
Akhil Sai Peddireddy
Przemyslaw Porebski
Srinivasan Venkatramanan
Lijing Wang
Pragati V Prasad
Jo W Walker
Alexander E Webber
Rachel B Slayton
Matthew Biggerstaff
Nicholas G Reich
Michael A Johansson
Source :
PLoS Computational Biology, Vol 20, Iss 5, p e1011200 (2024)
Publication Year :
2024
Publisher :
Public Library of Science (PLoS), 2024.

Abstract

During the COVID-19 pandemic, forecasting COVID-19 trends to support planning and response was a priority for scientists and decision makers alike. In the United States, COVID-19 forecasting was coordinated by a large group of universities, companies, and government entities led by the Centers for Disease Control and Prevention and the US COVID-19 Forecast Hub (https://covid19forecasthub.org). We evaluated approximately 9.7 million forecasts of weekly state-level COVID-19 cases for predictions 1-4 weeks into the future submitted by 24 teams from August 2020 to December 2021. We assessed coverage of central prediction intervals and weighted interval scores (WIS), adjusting for missing forecasts relative to a baseline forecast, and used a Gaussian generalized estimating equation (GEE) model to evaluate differences in skill across epidemic phases that were defined by the effective reproduction number. Overall, we found high variation in skill across individual models, with ensemble-based forecasts outperforming other approaches. Forecast skill relative to the baseline was generally higher for larger jurisdictions (e.g., states compared to counties). Over time, forecasts generally performed worst in periods of rapid changes in reported cases (either in increasing or decreasing epidemic phases) with 95% prediction interval coverage dropping below 50% during the growth phases of the winter 2020, Delta, and Omicron waves. Ideally, case forecasts could serve as a leading indicator of changes in transmission dynamics. However, while most COVID-19 case forecasts outperformed a naïve baseline model, even the most accurate case forecasts were unreliable in key phases. Further research could improve forecasts of leading indicators, like COVID-19 cases, by leveraging additional real-time data, addressing performance across phases, improving the characterization of forecast confidence, and ensuring that forecasts were coherent across spatial scales. In the meantime, it is critical for forecast users to appreciate current limitations and use a broad set of indicators to inform pandemic-related decision making.

Subjects

Subjects :
Biology (General)
QH301-705.5

Details

Language :
English
ISSN :
1553734X and 15537358
Volume :
20
Issue :
5
Database :
Directory of Open Access Journals
Journal :
PLoS Computational Biology
Publication Type :
Academic Journal
Accession number :
edsdoj.7c7eeeba3c3436d9f9bb67e5878ebf7
Document Type :
article
Full Text :
https://doi.org/10.1371/journal.pcbi.1011200