4,138 results on '"C, McDonald"'
Search Results
152. A multi-scale comparison of modeled and observed seasonal methane emissions in northern wetlands
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X. Xu, W. J. Riley, C. D. Koven, D. P. Billesbach, R. Y.-W. Chang, R. Commane, E. S. Euskirchen, S. Hartery, Y. Harazono, H. Iwata, K. C. McDonald, C. E. Miller, W. C. Oechel, B. Poulter, N. Raz-Yaseef, C. Sweeney, M. Torn, S. C. Wofsy, Z. Zhang, and D. Zona
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Ecology ,QH540-549.5 ,Life ,QH501-531 ,Geology ,QE1-996.5 - Abstract
Wetlands are the largest global natural methane (CH4) source, and emissions between 50 and 70° N latitude contribute 10–30 % to this source. Predictive capability of land models for northern wetland CH4 emissions is still low due to limited site measurements, strong spatial and temporal variability in emissions, and complex hydrological and biogeochemical dynamics. To explore this issue, we compare wetland CH4 emission predictions from the Community Land Model 4.5 (CLM4.5-BGC) with site- to regional-scale observations. A comparison of the CH4 fluxes with eddy flux data highlighted needed changes to the model's estimate of aerenchyma area, which we implemented and tested. The model modification substantially reduced biases in CH4 emissions when compared with CarbonTracker CH4 predictions. CLM4.5 CH4 emission predictions agree well with growing season (May–September) CarbonTracker Alaskan regional-level CH4 predictions and site-level observations. However, CLM4.5 underestimated CH4 emissions in the cold season (October–April). The monthly atmospheric CH4 mole fraction enhancements due to wetland emissions are also assessed using the Weather Research and Forecasting-Stochastic Time-Inverted Lagrangian Transport (WRF-STILT) model coupled with daily emissions from CLM4.5 and compared with aircraft CH4 mole fraction measurements from the Carbon in Arctic Reservoirs Vulnerability Experiment (CARVE) campaign. Both the tower and aircraft analyses confirm the underestimate of cold-season CH4 emissions by CLM4.5. The greatest uncertainties in predicting the seasonal CH4 cycle are from the wetland extent, cold-season CH4 production and CH4 transport processes. We recommend more cold-season experimental studies in high-latitude systems, which could improve the understanding and parameterization of ecosystem structure and function during this period. Predicted CH4 emissions remain uncertain, but we show here that benchmarking against observations across spatial scales can inform model structural and parameter improvements.
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- 2016
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153. Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici
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Megan C. McDonald, Lachlan McGinness, James K. Hane, Angela H. Williams, Andrew Milgate, and Peter S. Solomon
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Mycosphaerella graminicola ,comparative genomics ,intraspecific ,fungal effector ,accessory chromosome ,Genetics ,QH426-470 - Abstract
Zymoseptoria tritici is a host-specific, necrotrophic pathogen of wheat. Infection by Z. tritici is characterized by its extended latent period, which typically lasts 2 wks, and is followed by extensive host cell death, and rapid proliferation of fungal biomass. This work characterizes the level of genomic variation in 13 isolates, for which we have measured virulence on 11 wheat cultivars with differential resistance genes. Between the reference isolate, IPO323, and the 13 Australian isolates we identified over 800,000 single nucleotide polymorphisms, of which ∼10% had an effect on the coding regions of the genome. Furthermore, we identified over 1700 probable presence/absence polymorphisms in genes across the Australian isolates using de novo assembly. Finally, we developed a gene tree sorting method that quickly identifies groups of isolates within a single gene alignment whose sequence haplotypes correspond with virulence scores on a single wheat cultivar. Using this method, we have identified
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- 2016
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- View/download PDF
154. Quantifying NOx Emissions from U.S. Oil and Gas Production Regions Using TROPOMI NO2
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Barbara Dix, Colby Francoeur, Meng Li, Raquel Serrano-Calvo, Pieternel F. Levelt, J. Pepijn Veefkind, Brian C. McDonald, and Joost de Gouw
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nitrogen oxides ,remote sensing ,Atmospheric Science ,Space and Planetary Science ,Geochemistry and Petrology ,satellite ,emissions ,air quality ,oil and gas - Abstract
The production of crude oil and natural gas is associated with emissions of air pollutants, such as nitrogen oxides (NOx = NO + NO2) and volatile organic compounds, which are precursors for the formation of ground-level ozone. Knowledge of these emissions is critical to the understanding and mitigation of local air quality. NOx emissions from oil and gas production activities are not well described in commonly used emission inventories, and discrepancies of several factors have been found in the past. Here we present an easy and computationally efficient method to quantify NOx emissions from satellite NO2 observations that can be applied to evaluate common emission inventories and provide timely input for chemistry transport models. Using NO2 columns from the TROPOspheric Monitoring Instrument (TROPOMI), we calculated annually averaged NOx emissions from the divergence of NO2 column fluxes for six oil and gas production regions in the United States. Derived NOx emissions for the years 2018 to 2020 range between 4.8 and 81.1 t/day, and observed trends over time are consistent with changes in industrial activity. To evaluate the method, we compared our results with the fuel-based oil and gas NOx inventory (FOG) and performed sensitivity studies using model output from the Weather Research Forecasting model with Chemistry (WRF-Chem). We found that annually averaged NOx emissions from oil and gas production activities can in most cases be calculated within an uncertainty of 50%, while simultaneously derived emission maps show the spatial distribution of NOx emissions with a high level of detail. For future use, this method can easily be applied globally.
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- 2022
155. Cortical thickness across the lifespan
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Simon E. Fisher, Eveline A. Crone, Dominik Grotegerd, Jilly Naaijen, Anders M. Dale, Sean N. Hatton, Ramona Baur-Streubel, Anthony A. James, Daniel Brandeis, Andrew J. Kalnin, Andreas Reif, Hans-Jörgen Grabe, Pieter J. Hoekstra, Lars Nyberg, Fleur M. Howells, Moji Aghajani, Randy L. Buckner, Daniel A. Rinker, Steven G. Potkin, Dennis van 't Ent, Rachel M. Brouwer, Sophia Frangou, Yang Wang, Nhat Trung Doan, Theodore D. Satterthwaite, Christine Lochner, Geraldo F. Busatto, Lars T. Westlye, Lara M. Wierenga, Calhoun Vd, Henry Brodaty, Carles Soriano-Mas, Annette Conzelmann, Christian K. Tamnes, Julian N. Trollor, Nicholas G. Martin, Neeltje E.M. van Haren, René S. Kahn, Irina Lebedeva, Philip Asherson, Suzanne C. Swagerman, John A. Joska, Theophilus N. Akudjedu, Kang Sim, Lachlan T. Strike, Patricia Gruner, Brenna C. McDonald, Thomas Frodl, Edith Pomarol-Clotet, Víctor Ortiz-García de la Foz, Margaret J. Wright, Norbert Hosten, Jean-Paul Fouche, Bernd Weber, Salvador Sarró, Wei Wen, Dag Alnæs, Greig I. de Zubicaray, Iris E. C. Sommer, Marise W. J. Machielsen, Knut Schnell, Dara M. Cannon, Paola Fuentes-Claramonte, Josiane Bourque, Andreas Meyer-Lindenberg, Anton Albajes-Eizagirre, Sarah Hohmann, Erin W. Dickie, Theo G.M. van Erp, Micael Andersson, Paul Pauli, Thomas Espeseth, Heather C. Whalley, Victoria Chubar, Ruben C. Gur, Tomohiro Nakao, Xavier Caseras, Alessandro Bertolino, Ignacio Martínez-Zalacaín, Katharina Wittfeld, Erick J. Canales-Rodríguez, David C. Glahn, Neda Jahanshad, Jiyang Jiang, Katie L. McMahon, Stefan Borgwardt, Erlend S. Dørum, Jaap Oosterlaan, Won Hee Lee, Alan Breier, Steven Williams, Aristotle N. Voineskos, Bernard Mazoyer, Jordan W. Smoller, Nancy C. Andreasen, Ilya M. Veer, Tiffany M. Chaim-Avancini, Sophie Maingault, Paul M. Thompson, Eco J. C. de Geus, Luisa Lázaro, Giulio Pergola, Efstathios Papachristou, Beng-Choon Ho, David Mataix-Cols, Esther Walton, Ben J. Harrison, Dirk J. Heslenfeld, Pablo Najt, Helena Fatouros-Bergman, Derrek P. Hibar, Gunter Schumann, Raymond Salvador, Lieuwe de Haan, Henry Völzke, Joaquim Radua, Henk Temmingh, Lianne Schmaal, Martine Hoogman, Daniel H. Wolf, Georg C. Ziegler, Marieke Klein, Barbara Franke, Erik G. Jönsson, Laura Koenders, Stefan Ehrlich, Oliver Gruber, Ingrid Agartz, Kun Yang, Ryota Kanai, Sarah Baumeister, Colm McDonald, Annabella Di Giorgio, Amanda Worker, Anne Uhlmann, Marcus V. Zanetti, Danai Dima, Matthew D. Sacchet, Sarah E. Medland, Aurora Bonvino, Benedicto Crespo-Facorro, Jan Egil Nordvik, Joshua L. Roffman, Yannis Paloyelis, Jessica A. Turner, T. P. Klyushnik, Christopher G. Davey, Rachel E. Gur, Ian B. Hickie, Christopher R.K. Ching, Jonna Kuntsi, Tobias Banaschewski, Chaim Huyser, Amirhossein Modabbernia, John D. West, Fabrice Crivello, Núria Bargalló, Patricia J. Conrod, Nic J.A. van der Wee, Mauricio H. Serpa, Thomas H. Wassink, Kathryn I. Alpert, Dick J. Veltman, Andrew J. Saykin, Genevieve McPhilemy, Perminder S. Sachdev, Vincent P. Clark, Ian H. Gotlib, Susanne Erk, Henrik Walter, Dennis van den Meer, Simon Cervenka, Oliver Grimm, Andrew M. McIntosh, Alexander Tomyshev, Francisco X. Castellanos, Bernd Kramer, Klaus-Peter Lesch, Odile A. van den Heuvel, Sophia I. Thomopoulos, Diana Tordesillas-Gutiérrez, Terry L. Jernigan, Yulyia Yoncheva, Anouk den Braber, Jim Lagopoulos, Maria J. Portella, Ole A. Andreassen, Gaelle E. Doucet, Avram J. Holmes, Nynke A. Groenewold, Pedro G.P. Rosa, Hilleke E. Hulshoff Pol, Sanne Koops, José M. Menchón, Jan K. Buitelaar, Dan J. Stein, Dorret I. Boomsma, Lei Wang, C.A. Hartman, Pascual Sánchez-Juan, Andreas Heinz, European Commission, National Institute of Child Health and Human Development (US), QIMR Berghofer Medical Research Institute (Australia), University of Queensland, National Cancer Institute (US), Dutch Research Council, Netherlands Organisation for Health Research and Development, National Institute of Mental Health (US), European Research Council, National Center for Advancing Translational Sciences (US), Medical Research Council (UK), Fundación Marques de Valdecilla, Instituto de Salud Carlos III, Swedish Research Council, South-Eastern Norway Regional Health Authority, Research Council of Norway, Icahn School of Medicine at Mount Sinai, South London and Maudsley NHS Foundation Trust, NHS Foundation Trust, National Institute for Health Research (UK), Clinical Cognitive Neuropsychiatry Research Program (CCNP), Movement Disorder (MD), Developmental Neuroscience in Society, Child and Adolescent Psychiatry / Psychology, Adult Psychiatry, APH - Mental Health, ANS - Complex Trait Genetics, ANS - Mood, Anxiety, Psychosis, Stress & Sleep, Child Psychiatry, ANS - Cellular & Molecular Mechanisms, General Paediatrics, ARD - Amsterdam Reproduction and Development, Karolinska Schizophrenia Project (KaSP), Ontwikkelingspsychologie (Psychologie, FMG), Psychiatry, Amsterdam Neuroscience - Mood, Anxiety, Psychosis, Stress & Sleep, Epidemiology and Data Science, Neurology, Amsterdam Neuroscience - Neurodegeneration, Pediatric surgery, Anatomy and neurosciences, Amsterdam Neuroscience - Compulsivity, Impulsivity & Attention, Amsterdam Neuroscience - Brain Imaging, RS: MHeNs - R2 - Mental Health, Psychiatrie & Neuropsychologie, Biological Psychology, APH - Methodology, Complex Trait Genetics, Amsterdam Neuroscience - Complex Trait Genetics, Educational and Family Studies, Cognitive Psychology, IBBA, Clinical Neuropsychology, Faculty of Behavioural and Movement Sciences, and APH - Personalized Medicine
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Male ,Aging ,Neurologi ,Audiology ,Trajectories ,0302 clinical medicine ,130 000 Cognitive Neurology & Memory ,diagnostic imaging [Cerebral Cortex] ,Child ,Research Articles ,Cerebral Cortex ,Psychiatry ,Aged, 80 and over ,Radiological and Ultrasound Technology ,Fractional polynomial ,05 social sciences ,Radiology, Nuclear Medicine & Medical Imaging ,1. No poverty ,Cognition ,Middle Aged ,Cerebral cortex ,Regression ,3. Good health ,Escorça cerebral ,Neurology ,Radiology Nuclear Medicine and imaging ,Healthy individuals ,Child, Preschool ,anatomy & histology [Cerebral Cortex] ,Female ,Analysis of variance ,Anatomy ,Life Sciences & Biomedicine ,Trajectorie ,Research Article ,Neuroinformatics ,Adult ,medicine.medical_specialty ,Adolescent ,Human Development ,Clinical Neurology ,BF ,Neuroimaging ,Biology ,Development ,050105 experimental psychology ,Psykiatri ,Cortical thickness ,03 medical and health sciences ,Young Adult ,Neuroimaging genetics ,Envelliment ,medicine ,Humans ,trajectories ,0501 psychology and cognitive sciences ,Radiology, Nuclear Medicine and imaging ,ddc:610 ,development ,Aged ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,Science & Technology ,Brain morphometry ,aging ,Neurosciences ,cortical thickness ,Cross-Sectional Studies ,RC0321 ,Neurology (clinical) ,Neurosciences & Neurology ,030217 neurology & neurosurgery ,physiology [Human Development] - Abstract
Special Issue: The ENIGMA Consortium: the first 10 years., Delineating the association of age and cortical thickness in healthy individuals is critical given the association of cortical thickness with cognition and behavior. Previous research has shown that robust estimates of the association between age and brain morphometry require large-scale studies. In response, we used cross-sectional data from 17,075 individuals aged 3–90 years from the Enhancing Neuroimaging Genetics through Meta-Analysis (ENIGMA) Consortium to infer age-related changes in cortical thickness. We used fractional polynomial (FP) regression to quantify the association between age and cortical thickness, and we computed normalized growth centiles using the parametric Lambda, Mu, and Sigma method. Interindividual variability was estimated using meta-analysis and one-way analysis of variance. For most regions, their highest cortical thickness value was observed in childhood. Age and cortical thickness showed a negative association; the slope was steeper up to the third decade of life and more gradual thereafter; notable exceptions to this general pattern were entorhinal, temporopolar, and anterior cingulate cortices. Interindividual variability was largest in temporal and frontal regions across the lifespan. Age and its FP combinations explained up to 59% variance in cortical thickness. These results may form the basis of further investigation on normative deviation in cortical thickness and its significance for behavioral and cognitive outcomes., European Community's Seventh Framework Programme, Grant/Award Numbers: 278948, 602450, 603016, 602805; US National Institute of Child Health and Human Development, Grant/Award Numbers: RO1HD050735, 1009064, 496682; QIMR Berghofer Medical Research Institute and the Centre for Advanced Imaging, University of Queensland; ICTSI NIH/NCRR, Grant/Award Number: RR025761; European Community's Horizon 2020 Programme, Grant/Award Numbers: 667302, 643051; Vici Innovation Program, Grant/Award Numbers: #91619115, 016-130-669; NWO Brain & Cognition Excellence Program, Grant/Award Number: 433-09-229; Biobanking and Biomolecular Resources Research Infrastructure (Netherlands) (BBMRI-NL); Spinozapremie, Grant/Award Number: NWO-56-464-14192; Biobanking and Biomolecular Resources Research Infrastructure, Grant/Award Numbers: 184.033.111, 184.021.007; Netherlands Organization for Health Research and Development (ZonMW), Grant/Award Numbers: 480-15-001/674, 024.001.003, 911-09-032, 056-32-010, 481-08-011, 016-115-035, 31160008, 400-07-080, 400-05-717, 451-04-034, 463-06-001, 480-04-004, 904-61-193, 912-10-020, 985-10-002, 904-61-090; NIMH, Grant/Award Number: R01 MH090553; Geestkracht programme of the Dutch Health Research Council, Grant/Award Number: 10-000-1001; FP7 Ideas: European Research Council; Nederlandse Organisatie voor Wetenschappelijk Onderzoek, Grant/Award Numbers: NWO/SPI 56-464-14192, NWO-MagW 480-04-004, 433-09-220, NWO 51.02.062, NWO 51.02.061; National Center for Advancing Translational Sciences, National Institutes of Health, Grant/Award Number: UL1 TR000153; National Center for Research Resources; National Center for Research Resources at the National Institutes of Health, Grant/Award Numbers: NIH 1U24 RR025736-01, NIH 1U24 RR021992; NIH Institutes contributing to the Big Data to Knowledge; U.S. National Institutes of Health, Grant/Award Numbers: R01 CA101318, P30 AG10133, R01 AG19771; Medical Research Council, Grant/Award Numbers: U54EB020403, G0500092; National Institute of Mental Health, Grant/Award Numbers: R01MH117014, R01MH042191; Fundación Instituto de Investigación Marqués de Valdecilla, Grant/Award Numbers: API07/011, NCT02534363, NCT0235832; Instituto de Salud Carlos III, Grant/Award Numbers: PI14/00918, PI14/00639, PI060507, PI050427, PI020499; Swedish Research Council, Grant/Award Numbers: 523-2014-3467, 2017-00949, 521-2014-3487; South-Eastern Norway Health Authority; the Research Council of Norway, Grant/Award Number: 223273; South Eastern Norway Regional Health Authority, Grant/Award Numbers: 2017-112, 2019107; Icahn School of Medicine at Mount Sinai; Seventh Framework Programme (FP7/2007-2013), Grant/Award Number: 602450; National Institutes of Health, Grant/Award Numbers: R01 MH116147, R01 MH113619, R01 MH104284; South London and Maudsley NHS Foundation Trust; the National Institute for Health Research (NIHR)
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- 2022
156. Greater male than female variability in regional brain structure across the lifespan
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Erick J. Canales-Rodríguez, Hans J. Grabe, Dirk J. Heslenfeld, Erik G. Jönsson, Oliver Gruber, Daniel Brandeis, Yang Wang, Henry Brodaty, Ruben C. Gur, Iris E. C. Sommer, Paul M. Thompson, Knut K. Kolskår, Christopher G. Davey, Dick J. Veltman, Eco J. C. de Geus, Tobias Banaschewski, Greig I. Zubicaray, Xavier Caseras, Sarah Baumeister, Raquel E. Gur, Vincent P. Clark, Maria J. Portella, Simon E. Fisher, Christopher R.K. Ching, Lars T. Westlye, Laura Koenders, Vince D. Calhoun, Carles Soriano-Mas, Nicholas G. Martin, Stefan Ehrlich, Fleur M. Howells, Catharina A. Hartman, Matthew D. Sacchet, Ole A. Andreassen, Josiane Bourque, Fabrice Crivello, Annette Conzelmann, Jaap Oosterlaan, Brenna C. McDonald, Gaelle E. Doucet, Avram J. Holmes, José M. Menchón, Danai Dima, Moji Aghajani, Joshua L. Roffman, Steven Williams, Lei Wang, David Mataix-Cols, Philip R. Szeszko, Bernd Weber, Tiril P. Gurholt, Sarah Hohmann, Ian H. Gotlib, Patricia Gruner, Anthony C. James, Paul Pauli, Lara M. Wierenga, Andrew M. McIntosh, Andrew J. Kalnin, Jim Lagopoulos, Henrik Walter, Andreas Reif, Andrew Simmons, Norbert Hosten, Pieter J. Hoekstra, Aristotle Voineskos, Alexander Tomyshev, Anton Albajes-Eizagirre, Jean-Paul Fouche, Dara M. Cannon, Ignacio Martínez‐Zalacaín, Geneviève Richard, Theophilus N. Akudjedu, David C. Glahn, Patricia J. Conrod, Ben J. Harrison, Alan Anticevic, Martine Hoogman, Francisco X. Castellanos, Bernd Kramer, Neda Jahanshad, Lieuwe de Haan, Dennis van der Meer, John D. West, Alan Breier, Jordan W. Smoller, P. G. P. Rosa, Katharina Wittfeld, Dan J. Stein, Jiyang Jiang, Jilly Naaijen, Christine Lochner, Dorret I. Boomsma, Alessandro Bertolino, Marise W. J. Machielsen, Hilleke E. Hulshoff Pol, Henry Völzke, Christian K. Tamnes, Ingrid Agartz, Georg C. Ziegler, Marieke Klein, Lars Nyberg, Perminder S. Sachdev, Philip Asherson, I.M. Veer, Sean N. Hatton, Núria Bargalló, Annabella Di Giorgio, Henk Temmingh, John A. Joska, Odile A. van den Heuvel, Wei Wen, Eveline A Crone, Kang Sim, Kathryn I. Alpert, Dennis van 't Ent, Jan K. Buitelaar, Joaquim Radua, Julian N. Trollor, B Mazoyer, Chaim Huyser, H. C. Whalley, Irina Lebedeva, Erin W. Dickie, Marcus Vinicus Zanetti, Stefan Borgwardt, Theodore D. Satterthwaite, Daniel H Wolf, Sophia I. Thomopoulos, Giulio Pergola, Luisa Lazaro, Ramona Baur-Streubel, Beathe Haatveit, Yannis Paloyelis, Ian B. Hickie, Jonna Kuntsi, Sophia Frangou, R. Salvador, Geraldo F. Busatto, Margaret J. Wright, Aurora Bonvino, Edith Pomarol-Clotet, Anouk den Braber, Lachlan T. Strike, Phil Lee, Anne Uhlmann, Yuliya N. Yoncheva, Mauricio H. Serpa, Dag Alnæs, Paola Fuentes-Claramonte, Katie L. McMahon, Andrew J. Saykin, Genevieve McPhilemy, Tiffany M. Chaim-Avancini, Sophie Maingault, Barbara Franke, Colm McDonald, Rachel M. Brouwer, Salvador Sarró, Department of Psychology, Education and Child Studies, Biological Psychology, APH - Mental Health, APH - Methodology, Complex Trait Genetics, Amsterdam Neuroscience - Complex Trait Genetics, AMS - Ageing & Vitality, AMS - Sports, APH - Personalized Medicine, Cognitive Psychology, Clinical Neuropsychology, IBBA, Karolinska Schizophrenia Project (KaSP) Consortium, Adult Psychiatry, ANS - Complex Trait Genetics, ANS - Mood, Anxiety, Psychosis, Stress & Sleep, Child Psychiatry, ANS - Cellular & Molecular Mechanisms, ANS - Amsterdam Neuroscience, General Paediatrics, ARD - Amsterdam Reproduction and Development, Interdisciplinary Centre Psychopathology and Emotion regulation (ICPE), Clinical Cognitive Neuropsychiatry Research Program (CCNP), Guided Treatment in Optimal Selected Cancer Patients (GUTS), Movement Disorder (MD), Psychiatrie & Neuropsychologie, RS: MHeNs - R2 - Mental Health, Psychiatry, Amsterdam Neuroscience - Mood, Anxiety, Psychosis, Stress & Sleep, Neurology, Amsterdam Neuroscience - Neurodegeneration, Anatomy and neurosciences, Amsterdam Neuroscience - Compulsivity, Impulsivity & Attention, Pediatric surgery, and Amsterdam Neuroscience - Brain Imaging
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Male ,Netherlands Twin Register (NTR) ,SEGMENTATION ,Vulnerability ,Disease ,HM ,0302 clinical medicine ,Anàlisi de variància ,130 000 Cognitive Neurology & Memory ,diagnostic imaging [Cerebral Cortex] ,sexual characteristics ,Analysis of variance ,nuclear magnetic resonance imaging ,Cervell ,Research Articles ,Cerebral Cortex ,Sex Characteristics ,Radiological and Ultrasound Technology ,05 social sciences ,Brain ,clinical trial ,Brain Structure ,Magnetic Resonance Imaging ,Early life ,Adolescence ,medicine.anatomical_structure ,Neurology ,Cerebral cortex ,Healthy individuals ,X-CHROMOSOME ,anatomy & histology [Cerebral Cortex] ,Evolution of the brain ,Female ,Anatomy ,Neurovetenskaper ,Research Article ,Radiology, Nuclear Medicine and Medical Imaging ,Neuroinformatics ,SEX-DIFFERENCES ,diagnostic imaging ,brain ,Human Development ,BF ,Neuroimaging ,SURFACE-AREA ,Evolució del cervell ,Regional area ,Biology ,MULTISAMPLE ,050105 experimental psychology ,brain cortex ,03 medical and health sciences ,CEREBRAL-CORTEX ,Sex differences ,medicine ,Humans ,0501 psychology and cognitive sciences ,Radiology, Nuclear Medicine and imaging ,human ,ddc:610 ,Cortical surface ,GENERAL INTELLIGENCE ,diagnostic imaging [Brain] ,METAANALYSIS ,biological variation ,HUMAN HIPPOCAMPUS ,Neurodevelopmental disorders Donders Center for Medical Neuroscience [Radboudumc 7] ,physiology [Biological Variation, Population] ,Neurosciences ,Gender ,Brain Cortical Thickness ,multicenter study ,Biological Variation, Population ,Diferències entre sexes ,physiology ,RC0321 ,Radiologi och bildbehandling ,Neurology (clinical) ,anatomy & histology [Brain] ,170 000 Motivational & Cognitive Control ,030217 neurology & neurosurgery ,anatomy and histology ,meta analysis ,physiology [Human Development] ,Demography - Abstract
Contains fulltext : 248376.pdf (Publisher’s version ) (Open Access) For many traits, males show greater variability than females, with possible implications for understanding sex differences in health and disease. Here, the ENIGMA (Enhancing Neuro Imaging Genetics through Meta-Analysis) Consortium presents the largest-ever mega-analysis of sex differences in variability of brain structure, based on international data spanning nine decades of life. Subcortical volumes, cortical surface area and cortical thickness were assessed in MRI data of 16,683 healthy individuals 1-90 years old (47% females). We observed significant patterns of greater male than female between-subject variance for all subcortical volumetric measures, all cortical surface area measures, and 60% of cortical thickness measures. This pattern was stable across the lifespan for 50% of the subcortical structures, 70% of the regional area measures, and nearly all regions for thickness. Our findings that these sex differences are present in childhood implicate early life genetic or gene-environment interaction mechanisms. The findings highlight the importance of individual differences within the sexes, that may underpin sex-specific vulnerability to disorders.
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- 2022
157. What we learn about bipolar disorder from large-scale neuroimaging
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Christian K. Tamnes, Bartholomeus C M Haarman, Jair C. Soares, Ole A. Andreassen, Viola Oertel, Theodore D. Satterthwaite, G. Tronchin, Michael Stäblein, Bradley J. MacIntosh, Melissa Pauling, Christopher R.K. Ching, Daniel H. Wolf, Dick J. Veltman, Ingrid Agartz, Bernhard T. Baune, Salvador Sarró, Mon-Ju Wu, Scott C Fears, Eduard Vieta, Melissa J. Green, Neeltje E.M. van Haren, Yann Quidé, Erlend Bøen, Yash Patel, Igor Nenadic, Martin Alda, Lisa T. Eyler, Arnaud Pouchon, Danai Dima, Tomáš Paus, Irene Bollettini, Torbjørn Elvsåshagen, Rachel M. Brouwer, Lakshmi N. Yatham, Michael Bauer, Caterina del Mar Bonnín, C. McDonald, Udo Dannlowski, Bronwyn Overs, Edith Pomarol-Clotet, Cristian Vargas Upegui, Oliver Gruber, Henricus G. Ruhé, Márcio Gerhardt Soeiro-de-Souza, Edouard Duchesnay, Hilary P. Blumberg, Tilo Kircher, Miho Ota, Michael Berk, Christoph Abé, Andreas Jansen, Kang Sim, Heather C. Whalley, Derrek P. Hibar, Roel A. Ophoff, Georgios V Thomaidis, Henrik Walter, Sophia Frangou, Michèle Wessa, Dara M. Cannon, Cara M. Altimus, Allison C. Nugent, Rodrigo Machado-Vieira, Orwa Dandash, Marcella Bellani, Unn K. Haukvik, Philip B. Mitchell, Ling-Li Zeng, Christian Knöchel, Jose Manuel Goikolea, Sonja M C de Zwarte, Francesco Benedetti, Sara Poletti, Janice M. Fullerton, Carlos A. Zarate, Aart H. Schene, Dan J. Stein, Chantal Henry, Tristram A. Lett, Mikael Landén, Daniel L Pham, Paolo Brambilla, Silvia Alonso-Lana, Sophia I. Thomopoulos, Carlos López-Jaramillo, Tomas Hajek, Bernd Kramer, G. Delvecchio, Maria M. Rive, Lars T. Westlye, Erick J. Canales-Rodríguez, Victoria L. Ives-Deliperi, Dominik Grotegerd, Beny Lafer, Abraham Nunes, Carrie E. Bearden, Raymond Salvador, Joaquim Radua, Amy C Bilderbeck, Xavier Caseras, Paul M. Thompson, Jorge R. C. Almeida, Pauline Favre, Gloria Roberts, David C. Glahn, Dag Alnæs, Julian A Pineda-Zapata, Tiril P. Gurholt, Mircea Polosan, Josselin Houenou, Fabiano G. Nery, Leila Nabulsi, Mary L. Phillips, Fleur M. Howells, Ana M. Díaz-Zuluaga, Elisa M T Melloni, Ching, C. R. K., Hibar, D. P., Gurholt, T. P., Nunes, A., Thomopoulos, S. I., Abe, C., Agartz, I., Brouwer, R. M., Cannon, D. M., de Zwarte, S. M. C., Eyler, L. T., Favre, P., Hajek, T., Haukvik, U. K., Houenou, J., Landen, M., Lett, T. A., Mcdonald, C., Nabulsi, L., Patel, Y., Pauling, M. E., Paus, T., Radua, J., Soeiro-de-Souza, M. G., Tronchin, G., van Haren, N. E. M., Vieta, E., Walter, H., Zeng, L. -L., Alda, M., Almeida, J., Alnaes, D., Alonso-Lana, S., Altimus, C., Bauer, M., Baune, B. T., Bearden, C. E., Bellani, M., Benedetti, F., Berk, M., Bilderbeck, A. C., Blumberg, H. P., Boen, E., Bollettini, I., del Mar Bonnin, C., Brambilla, P., Canales-Rodriguez, E. J., Caseras, X., Dandash, O., Dannlowski, U., Delvecchio, G., Diaz-Zuluaga, A. M., Dima, D., Duchesnay, E., Elvsashagen, T., Fears, S. C., Frangou, S., Fullerton, J. M., Glahn, D. C., Goikolea, J. M., Green, M. J., Grotegerd, D., Gruber, O., Haarman, B. C. M., Henry, C., Howells, F. M., Ives-Deliperi, V., Jansen, A., Kircher, T. T. J., Knochel, C., Kramer, B., Lafer, B., Lopez-Jaramillo, C., Machado-Vieira, R., Macintosh, B. J., Melloni, E. M. T., Mitchell, P. B., Nenadic, I., Nery, F., Nugent, A. C., Oertel, V., Ophoff, R. A., Ota, M., Overs, B. J., Pham, D. L., Phillips, M. L., Pineda-Zapata, J. A., Poletti, S., Polosan, M., Pomarol-Clotet, E., Pouchon, A., Quide, Y., Rive, M. M., Roberts, G., Ruhe, H. G., Salvador, R., Sarro, S., Satterthwaite, T. D., Schene, A. H., Sim, K., Soares, J. C., Stablein, M., Stein, D. J., Tamnes, C. K., Thomaidis, G. V., Upegui, C. V., Veltman, D. J., Wessa, M., Westlye, L. T., Whalley, H. C., Wolf, D. H., Wu, M. -J., Yatham, L. N., Zarate, C. A., Thompson, P. M., and Andreassen, O. A.
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mega-analysis ,Stress-related disorders Donders Center for Medical Neuroscience [Radboudumc 13] ,cortical surface area ,Review Article ,0302 clinical medicine ,Manic-depressive illness ,Multicenter Studies as Topic ,Spectrum disorder ,Review Articles ,bipolar disorder ,Cerebral Cortex ,Trastorn bipolar ,neuroimaging ,Radiological and Ultrasound Technology ,05 social sciences ,ENIGMA ,HUMAN BRAIN ,Magnetic Resonance Imaging ,psychiatry ,3. Good health ,Neurology ,Meta-analysis ,Scale (social sciences) ,Anatomy ,Psychology ,Clinical risk factor ,Clinical psychology ,MRI ,MAJOR PSYCHIATRIC-DISORDERS ,Schizoaffective disorder ,050105 experimental psychology ,03 medical and health sciences ,Magnetic resonance imaging ,Neuroimaging ,Meta-Analysis as Topic ,SDG 3 - Good Health and Well-being ,Imatges per ressonància magnètica ,medicine ,Humans ,0501 psychology and cognitive sciences ,Radiology, Nuclear Medicine and imaging ,Bipolar disorder ,HIPPOCAMPAL VOLUMES ,mega‐analysis ,GRAY-MATTER VOLUME ,SPECTRUM DISORDER ,volume ,DIABETES-MELLITUS ,cortical thickness ,COGNITIVE IMPAIRMENT ,medicine.disease ,Mental illness ,meta-analysis ,meta‐analysis ,RC0321 ,Neurology (clinical) ,SCHIZOAFFECTIVE DISORDER ,PSYCHOTIC FEATURES ,030217 neurology & neurosurgery - Abstract
MRI‐derived brain measures offer a link between genes, the environment and behavior and have been widely studied in bipolar disorder (BD). However, many neuroimaging studies of BD have been underpowered, leading to varied results and uncertainty regarding effects. The Enhancing Neuro Imaging Genetics through Meta‐Analysis (ENIGMA) Bipolar Disorder Working Group was formed in 2012 to empower discoveries, generate consensus findings and inform future hypothesis‐driven studies of BD. Through this effort, over 150 researchers from 20 countries and 55 institutions pool data and resources to produce the largest neuroimaging studies of BD ever conducted. The ENIGMA Bipolar Disorder Working Group applies standardized processing and analysis techniques to empower large‐scale meta‐ and mega‐analyses of multimodal brain MRI and improve the replicability of studies relating brain variation to clinical and genetic data. Initial BD Working Group studies reveal widespread patterns of lower cortical thickness, subcortical volume and disrupted white matter integrity associated with BD. Findings also include mapping brain alterations of common medications like lithium, symptom patterns and clinical risk profiles and have provided further insights into the pathophysiological mechanisms of BD. Here we discuss key findings from the BD working group, its ongoing projects and future directions for large‐scale, collaborative studies of mental illness., This review discusses the major challenges facing neuroimaging research of bipolar disorder and highlights the major accomplishments, ongoing challenges and future goals of the ENIGMA Bipolar Disorder Working Group.
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- 2022
158. Supplementary material to 'The Fire Inventory from NCAR version 2.5: an updated global fire emissions model for climate and chemistry applications'
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Christine Wiedinmyer, Yosuke Kimura, Elena C. McDonald-Buller, Louisa K. Emmons, Rebecca R. Buchholz, Wenfu Tang, Keenan Seto, Maxwell B. Joseph, Kelley C. Barsanti, Annmarie G. Carlton, and Robert Yokelson
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- 2023
159. Normative Modeling of Brain Morphometry Across the Lifespan using CentileBrain: Algorithm Benchmarking and Model Optimization
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Ruiyang Ge, Yuetong Yu, Yi Xuan Qi, Yunan Vera Fan, Shiyu Chen, Chuntong Gao, Shalaila S Haas, Amirhossein Modabbernia, Faye New, Ingrid Agartz, Philip Asherson, Rosa Ayesa-Arriola, Nerisa Banaj, Tobias Banaschewski, Sarah Baumeister, Alessandro Bertolino, Dorret I Boomsma, Stefan Borgwardt, Josiane Bourque, Daniel Brandeis, Alan Breier, Henry Brodaty, Rachel M Brouwer, Randy Buckner, Jan K Buitelaar, Dara M Cannon, Xavier Caseras, Simon Cervenka, Patricia J Conrod, Benedicto Crespo-Facorro, Fabrice Crivello, Eveline A Crone, Liewe de Haan, Greig I de Zubicaray, Annabella Di Giorgio, Susanne Erk, Simon E Fisher, Barbara Franke, Thomas Frodl, David C Glahn, Dominik Grotegerd, Oliver Gruber, Patricia Gruner, Raquel E Gur, Ruben C Gur, Ben J Harrison, Sean N Hatton, Ian Hickie, Fleur M Howells, Hilleke E Hulshoff Pol, Chaim Huyser, Terry L Jernigan, Jiyang Jiang, John A Joska, Rene S Kahn, Andrew J Kalnin, Nicole A Kochan, Sanne Koops, Jonna Kuntsi, Jim Lagopoulos, Luisa Lazaro, Irina S Lebedeva, Christine Lochner, Nicholas G Martin, Bernard Mazoyer, Brenna C McDonald, Colm McDonald, Katie L McMahon, Tomohiro Nakao, Lars Nyberg, Fabrizio Piras, Maria J Portella, Jiang Qiu, Joshua L Roffman, Perminder S Sachdev, Nicole Sanford, Andrew J Saykin, Theodore D Satterthwaite, Sophia I Thomopolous, Carl M Sellgren, Kang Sim, Jordan W Smoller, Jair Soares, Iris E Sommer, Gianfranco Spalletta, Dan J Stein, Christian K Tamnes, Alexander S Tomyshev, Theo GM van Erp, Diana Tordesillas-Gutierrez, Julian N Trollor, Dennis van 't Ent, Odile A van den Heuvel, Neeltje EM van Haren, Daniela Vecchio, Dick J Veltman, Dongtao Wei, Henrik Walter, Yang Wang, Bernd Weber, Margaret J Wright, Wei Wen, Lars T Westlye, Lara M Wierenga, Paul M Thompson, Steven CR Williams, Sarah Medland, Mon-Ju Wu, Kevin Yu, Neda Jahanshad, and Sophia Frangou
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Background: Normative modeling is a statistical approach to quantify the degree to which a particular individual-level measure deviates from the pattern observed in a normative reference population. When applied to human brain morphometric measures it has the potential to inform about the significance of normative deviations for health and disease. Normative models can be implemented using a variety of algorithms that have not been systematically appraised. Methods: To address this gap, eight algorithms were compared in terms of performance and computational efficiency using brain regional morphometric data from 37,407 healthy individuals (53% female; aged 3-90 years) collated from 87 international MRI datasets. Performance was assessed with the mean absolute error (MAE) and computational efficiency was inferred from central processing unit (CPU) time. The algorithms evaluated were Ordinary Least Squares Regression (OLSR), Bayesian Linear Regression (BLR), Generalized Additive Models for Location, Scale, and Shape (GAMLSS), Parametric Lambda, Mu, Sigma (LMS), Gaussian Process Regression (GPR), Warped Bayesian Linear Regression (WBLG), Hierarchical Bayesian Regression (HBR), and Multivariable Fractional Polynomial Regression (MFPR). Model optimization involved testing nine covariate combinations pertaining to acquisition features, parcellation software versions, and global neuroimaging measures (i.e., total intracranial volume, mean cortical thickness, and mean cortical surface area). Findings: Statistical comparisons across models at PFDR
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- 2023
160. Phone-Based Memory Test Predicts In-Clinic Memory, MCI Diagnosis, and Alzheimer’s Neuroimaging & Plasma Biomarkers
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Brianna Lawrence, Rachael Deardorf, Brenna C. McDonald, Jeffrey L. Dage, Sophia Wang, Fredrick W. Unverzagt, Paige D. Moore, Liana G. Apostolova, Andrew J. Saykin, and Shannon L. Risacher
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Ocean Engineering - Abstract
Background: Early detection of dementia has become important for interventions that are developed to slow disease progression. Due to technological advancements, healthcare is trending toward using more telehealth screenings due to the convenience it provides patients. In our research, we evaluate the accuracy of a phone-based memory screen at diagnosing mild cognitive impairment. Methods: 181 participants from the Indiana Alzheimer’s Disease Research Center (IADRC)were screened using the Memory and Aging Telephone Screen (MATS) and diagnosed as cognitively normal (CN), subjective cognitive decline (SCD), or mild cognitive impairment (MCI). 177 underwent Rey Auditory Verbal Learning Testing (RAVLT); 103 received Aβ PET scans([18F]florbetapir or [18F]florbetaben); 91 had plasma tau levels measured; and 140 received MRI scans (Freesurfer v6). ANCOVAs were used to evaluate differences between diagnostic groups covarying for age, sex, and education. ROC analysis and logistic regressions were used to predict MCI and Aβ positivity. Partial correlations covarying for sex and age (and education for RAVLT) were conducted to evaluate relationships between MATS scores with RAVLT, brain atrophy, pTau level, and amyloid deposition. Results: MCI patients showed significantly lower MATS scores for immediate (p
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- 2023
161. Maximizing accuracy of adolescent concussion diagnosis using individual elements of common standardized clinical assessment tools
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Daniel J. Corwin, Francesca Mandel, Catherine C. McDonald, Fairuz N. Mohammed, Susan Margulies, Ian Barnett, Kristy B. Arbogast, and Christina L. Master
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Physical Therapy, Sports Therapy and Rehabilitation ,Orthopedics and Sports Medicine ,General Medicine - Abstract
Context Multiple clinical evaluation tools exist for adolescent concussion, with various degrees of correlation, presenting challenges for clinicians in identifying which elements of these tools provide the greatest diagnostic utility. Objective To determine the combination of elements from four commonly-used clinical concussion batteries that maximize discrimination of concussed from non-concussed participants. Design Cross-sectional study Setting Suburban school and concussion program of a tertiary care academic center Patients/Participants 166 non-concussed (from a suburban school) and 231 concussed (from the school and concussion program) participants aged 13–19 years Main Outcome Measures Individual elements of the visio-vestibular examination (VVE), Sport Concussion Assessment Tool, 5th Edition (SCAT-5, including the modified balance error scoring system [mBESS]), King-Devick test (K-D), and Post-Concussion Symptom Inventory (PCSI) were evaluated. The sub-components of these tests were grouped into interpretable factors using sparse principal component analysis (sPCA). The 13 resultant factors were combined with clinical covariates into a logistic regression and ranked by frequency of inclusion into the ideal model, and the predictive performance of the ideal model was compared to each of the individual batteries using the area under the receiving operating characteristic curve (AUC). Results A cluster of 4 factors (F1: VVE saccades and vestibulo-ocular reflex; F2: mBESS double leg stance; F3: SCAT-5/PCSI symptoms; F4: K-D completion time) emerged. A model fit with the top factors performed as well as each battery in predicting concussion status (AUC=0.816 [95% CI: 0.731–0.889]), compared to SCAT-5 (AUC=0.784 [95% CI: 0.692–0.866]), PCSI (AUC=0.776 [95% CI: 0.674–0.863]), VVE (AUC=0.711 [95% CI: 0.602–0.814]), and K-D (AUC=0.708 [95% CI: 0.590–0.819]). Conclusions A multifaceted assessment for concussed adolescents, comprised of symptoms, attention, balance, and the visio-vestibular system, is critical. It is likely that current diagnostic batteries measure overlapping domains, and our sPCA analysis demonstrated strategies for streamlining comprehensive concussion assessment across a variety of settings.
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- 2023
162. SARS-CoV-2 control on a large urban college campus without mass testing
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Christopher O’Donnell, Katherine Brownlee, Elise Martin, Joe Suyama, Steve Albert, Steven Anderson, Sai Bhatte, Kenyon Bonner, Chad Burton, Micaela Corn, Heather Eng, Bethany Flage, Jay Frerotte, Goundappa K. Balasubramani, Catherine Haggerty, Joel Haight, Lee H. Harrison, Amy Hartman, Thomas Hitter, Wendy C. King, Kate Ledger, Jane W. Marsh, Margaret C. McDonald, Bethany Miga, Kimberly Moses, Anne Newman, Meg Ringler, Mark Roberts, Theresa Sax, Anantha Shekhar, Matthew Sterne, Tyler Tenney, Marian Vanek, Alan Wells, Sally Wenzel, and John Williams
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Public Health, Environmental and Occupational Health - Abstract
A small percentage of universities and colleges conducted mass SARS-CoV-2 testing. However, universal testing is resource-intensive, strains national testing capacity, and false negative tests can encourage unsafe behaviors.A large urban university campus.Virus control centered on three pillars: mitigation, containment, and communication, with testing of symptomatic and a random subset of asymptomatic students.Random surveillance testing demonstrated a prevalence among asymptomatic students of 0.4% throughout the term. There were two surges in cases that were contained by enhanced mitigation and communication combined with targeted testing. Cumulative cases totaled 445 for the term, most resulting from unsafe undergraduate student behavior and among students living off-campus. A case rate of 232/10,000 undergraduates equaled or surpassed several peer institutions that conducted mass testing.An emphasis on behavioral mitigation and communication can control virus transmission on a large urban campus combined with a limited and targeted testing strategy.
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- 2023
163. Cancer Therapeutic Targeting of Hypoxia Induced Carbonic Anhydrase IX: From Bench to Bedside
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Paul C. McDonald, Shawn C. Chafe, Claudiu T. Supuran, and Shoukat Dedhar
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Cancer Research ,Oncology - Abstract
Carbonic Anhydrase IX (CAIX) is a major metabolic effector of tumor hypoxia and regulates intra- and extracellular pH and acidosis. Significant advances have been made recently in the development of therapeutic targeting of CAIX. These approaches include antibody-based immunotherapy, as well as use of antibodies to deliver toxic and radioactive payloads. In addition, a large number of small molecule inhibitors which inhibit the enzymatic activity of CAIX have been described. In this commentary, we highlight the current status of strategies targeting CAIX in both the pre-clinical and clinical space, and discuss future perspectives that leverage inhibition of CAIX in combination with additional targeted therapies to enable effective, durable approaches for cancer therapy.
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- 2023
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164. Functional MRI of Language and Memory in Surgical Epilepsy: fMRI Wada Test
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Brenna C. McDonald, Rupa Radhakrishnan, and Kathleen M. Kingery
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- 2023
165. Space-Based Observations for Understanding Changes in the Arctic-Boreal Zone
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Bryan N Duncan, Lesley E Ott, James B Abshire, Ludovic Brucker, Mark L Carroll, James Carton, Josefino C Comiso, Emmanuel P Dinnat, Bruce C Forbes, Alemu Gonsamo, Watson W Gregg, Dorothy K Hall, Iolanda Ialongo, Randi Jandt, Ralph A Kahn, Alexey Karpechko, Stephan Kawa, Seiji Kato, Timo Kumpula, Erkki Kyrölä, Tatiana V Loboda, Kyle C Mcdonald, Paul M Montesano, Ray Nassar, Christopher S R Neigh, Claire L Parkinson, Benjamin Poulter, Jouni Pulliainen, Kimmo Rautiainen, Brendan M Rogers, Cecile S Rousseaux, Amber J Soja, Nicholas C Steiner, Johanna Tamminen, Patrick C Taylor, Maria A Tzortziou, Henrik Virta, James S Wang, Jennifer D Watts, David M Winker, and Dong L Wu
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Earth Resources And Remote Sensing - Abstract
Observations taken over the last few decades indicate that dramatic changes are occurring in the ArcticBoreal Zone (ABZ), which are having significant impacts on ABZ inhabitants, infrastructure, flora and fauna, and economies. While suitable for detecting overall change, the current capability is inadequate for systematic monitoring and for improving process based and large scale understanding of the integrated components of the ABZ, which includes the cryosphere, biosphere, hydrosphere, and atmosphere. Such knowledge will lead to improvements in Earth system models, enabling more accurate prediction of future changes and development of informed adaptation and mitigation strategies. In this article, we review the strengths and limitations of current space based observational capabilities for several important ABZ components and make recommendations for improving upon these current capabilities. We recommend an interdisciplinary and stepwise approach to develop a comprehensive ABZ Observing Network (ABZON), beginning with an initial focus on observing networks designed to gain process based understanding for individual ABZ components and systems that can then serve as the building blocks for a comprehensive ABZON.
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- 2019
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166. Development and Evaluation of a Multi-Year Fractional Surface Water Data Set Derived from Active/Passive Microwave Remote Sensing Data
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Ronny Schroeder, Kyle C. McDonald, Bruce D. Chapman, Katherine Jensen, Erika Podest, Zachary D. Tessler, Theodore J. Bohn, and Reiner Zimmermann
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SWAMPS ,wetlands ,inundation ,microwave ,backscatter ,GIEMS ,Science - Abstract
The sensitivity of Earth’s wetlands to observed shifts in global precipitation and temperature patterns and their ability to produce large quantities of methane gas are key global change questions. We present a microwave satellite-based approach for mapping fractional surface water (FW) globally at 25-km resolution. The approach employs a land cover-supported, atmospherically-corrected dynamic mixture model applied to 20+ years (1992–2013) of combined, daily, passive/active microwave remote sensing data. The resulting product, known as Surface WAter Microwave Product Series (SWAMPS), shows strong microwave sensitivity to sub-grid scale open water and inundated wetlands comprising open plant canopies. SWAMPS’ FW compares favorably (R2 = 91%–94%) with higher-resolution, global-scale maps of open water from MODIS and SRTM-MOD44W. Correspondence of SWAMPS with open water and wetland products from satellite SAR in Alaska and the Amazon deteriorates when exposed wetlands or inundated forests captured by the SAR products were added to the open water fraction reflecting SWAMPS’ inability to detect water underneath the soil surface or beneath closed forest canopies. Except for a brief period of drying during the first 4 years of observation, the inundation extent for the global domain excluding the coast was largely stable. Regionally, inundation in North America is advancing while inundation is on the retreat in Tropical Africa and North Eurasia. SWAMPS provides a consistent and long-term global record of daily FW dynamics, with documented accuracies suitable for hydrologic assessment and global change-related investigations.
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- 2015
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167. Brief Report: Healthcare Providers’ Discussions Regarding Transportation and Driving with Autistic and Non-autistic Patients
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Benjamin E. Yerys, Meghan E. Carey, Emma B. Sartin, Rachel K. Myers, Catherine C. McDonald, Cynthia J. Mollen, Kristina B. Metzger, Allison E. Curry, and Christina G. Labows
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medicine.medical_specialty ,business.industry ,Public health ,Service provider ,medicine.disease ,Article ,Patient diagnosis ,Autism spectrum disorder ,Family medicine ,Health care ,Developmental and Educational Psychology ,medicine ,Autism ,business ,Psychology ,Healthcare providers - Abstract
OBJECTIVE: To characterize healthcare and behavioral service providers’ transportation-related discussions with their autistic and non-autistic patients. METHOD: 78 providers completed a cross-sectional survey assessing their transportation discussions with patients. We used Mann–Whitney U tests and chi-square tests to compare differences in provider reports by patient diagnosis. RESULTS: Compared with one in two providers who reported they discuss transportation with non-autistic patients, only one in five have these conversations with their autistic patients. Few (8%) providers felt prepared to assess driving readiness in autistic patients, yet only a quarter refer patients elsewhere. CONCLUSION: There is a critical need to develop resources for use in medical settings to effectively support autistic adolescents’ independence and mobility as they transition into adulthood.
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- 2021
168. Pathogen transmission modes determine contact network structure, altering other pathogen characteristics
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Melissa Collier, Gregory F Albery, Grant C. McDonald, and Shweta Bansal
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General Immunology and Microbiology ,General Medicine ,General Agricultural and Biological Sciences ,General Biochemistry, Genetics and Molecular Biology ,General Environmental Science - Abstract
Pathogen traits can vary greatly and impact the ability of a pathogen to persist in a population. Although this variation is fundamental to disease ecology, little is known about the evolutionary pressures that drive these differences, particularly where they interact with host behavior. We hypothesized that host behaviors relevant to different transmission routes give rise to differences in contact network structure, constraining the space over which pathogen traits can evolve to maximize fitness. Our analysis of 232 contact networks across mammals, birds, reptiles, amphibians, arthropods, fish, and mollusks found that contact network topology varies by contact events, most notably in networks that are representative of fluid-exchange transmission. Using infectious disease model simulations, we showed that these differences in network structure suggest pathogens transmitted through fluid-exchange contact events will need traits associated with high transmissibility to successfully proliferate, compared to pathogens that transmit through other types of contact. These findings were supported through a review of known traits of pathogens that transmit in humans. Our work demonstrates that contact network structure may drive the evolution of compensatory pathogen traits according to transmission strategy, providing essential context for understanding pathogen evolution and ecology.
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- 2022
169. The Role of Tox Effector Proteins in the Parastagonospora Nodorum–Wheat Interaction
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Megan C. McDonald, Simon J. Williams, and Peter S. Solomon
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- 2022
170. 1941. Describing the immune response kinetics to mRNA COVID-19 vaccines among previously SARS-CoV-2–infected and –uninfected nursing home residents, a prospective longitudinal observational cohort evaluation—Georgia, October 2020 – September 2021
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Zeshan A Chisty, Melia Haile, Juliana DaSilva, M A Biology, Hollis Houston, Shoshona Le, Deana Li, Rahsaan Overton, Melissa Arons, Amy J Schuh, Clarisse A Tsang, Dejana Selenic, Jacob Clemente, Julia Bugrysheva, Alicia Branch, Natalie J Thornburg, Monica Epperson, Mohammed A Rasheed, Caitlin D Bohannon, Matthew J Stuckey, L C McDonald, Allison C Brown, and Preeta K Kutty
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Infectious Diseases ,Oncology - Abstract
Background To describe post-COVID-19 vaccination [fully vaccinated (FV) and first booster] immune response and occurrence of reinfection ( >90 days from prior infection) in nursing home residents (NHr) with/without evidence of prior SARS-CoV-2 infection. Methods In a longitudinal prospective cohort of 36 NHr from 3 NHs, interviews, chart abstractions, and specimens [blood and anterior nasal swabs (ANs)] were collected at baseline and monthly visits. ANs underwent molecular and BinaxNOW™ antigen testing. Quantitative Meso Scale Discovery platform tested blood specimens for anti-spike (S) protein and anti-nucleocapsid (N) antibodies. In addition, in a subset (n=13), S-specific memory B cells (MBCs) were tested with ELISpot assays. Results The cohort's median age was 72 years; 46% male, 64% White Non-Hispanic, 80% had ≥3 comorbidities, and 29 (81%) had prior SARS-CoV-2 infection. Of 36, 76% received Pfizer-BioNTech and 24% Moderna homologous vaccine. The median distribution of anti-S IgG concentrations among those with prior infection increased 15‒30 days post-FV, remained stable for 90 days, and declined by 120 days. The anti-S IgG remained above the estimated vaccine effectiveness (VE) thresholds published [Pfizer-BioNTech (95% VE: 530 BAU/ml), Moderna (90% VE: 298 BAU/ml)]. Among those without previous infection, anti-S IgG declined after 60 days and stayed near the VE thresholds until a recent infection/booster. Age, sex, and comorbidities had no appreciable impact on anti-S IgG. From enrollment to November 2021, 1of 29 had reinfection. From December 2021 to January 2022, 2 of 7 had a new infection, and 4 of 29 had reinfection, as shown by anti-N IgG rise. Persistently low numbers of total and anti-S MBC were seen across the evaluation, even with post-booster anti-S MBC rise. There was an immediate rise in anti-S IgG concentrations in all participants post-booster, irrespective of recent infection. Conclusion These findings from a NH convenience cohort suggest that prior SARS-CoV-2 infection has a pronounced immunomodulatory enhancing effect on the magnitude and duration of FV immune response. The decline of anti-S antibodies post-FV and rise after booster supported the booster recommendation in this cohort. The low MBC counts indicate immunosenescence in this high-risk population. Disclosures Hollis Houston, BA, Fidelity: Stocks/Bonds.
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- 2022
171. 2229. Antibiotic Resistance in Gram-Negative Community-Onset Urinary Tract Infections Among Adults Presenting to Hospitals, United States, 2012-2020
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Deana Li, James Baggs, Hannah Wolford, Preeta K Kutty, and L C McDonald
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Infectious Diseases ,Oncology - Abstract
Background Choosing empiric therapy for patients with community-onset urinary tract infections (CO-UTI) presenting to hospitals for treatment is challenging without understanding local antimicrobial susceptibility patterns. We investigated changes over time in antimicrobial resistance among CO-UTI pathogens and identified patient-level factors associated with higher levels of resistance. Methods We used non-duplicate positive urine cultures in the 2012-2020 Premier Healthcare Database as a proxy for CO-UTI in patients ≥ 18 years old presenting to hospitals receiving care categorized as community-onset inpatient (CO-INPT) or observation/emergency department (OBS/ED). We included cultures positive for Escherichia coli, Klebsiella pneumoniae, Proteus mirabilis, and Pseudomonas aeruginosa obtained within 3 days of admission. Phenotypes investigated include resistance to extended-spectrum cephalosporins (ESC), fluoroquinolones (FLQ), and trimethoprim-sulfamethoxazole (TMP-SX). Logistic regression analyses were performed. Results Among 1,987,605 urine cultures meeting study criteria from 432 hospitals, > 66% were E. coli. Antibiotic resistance (AR) was highest to FLQ among CO-INPT E. coli (31.7%) and P. mirabilis (29.3%) in 2020. ESC resistance increased from 2012 to 2020 among E. coli and K. pneumoniae in both CO-INPT and OBS/ED (p< 0.001). TMP-SX resistance remained > 20% among E. coli in CO-INPT and OBS/ED and P. mirabilis in CO-INPT throughout the study period. All AR phenotypes were significantly higher among CO-INPT than OBS/ED (p< 0.001), and higher among males than females (p< 0.001). FLQ resistance among E. coli, P. mirabilis, and P. aeruginosa was > 20% among males (28.2%, 30.4%, 21.9% respectively) but not females (17.5%, 15.1%, 14.5%) in OBS/ED, while it was > 20% among both males (37.2%, 37.3%, 24.6%) and females (31.2%, 33.9%, 21.9%) in CO-INPT. Figure 1.% Resistance to extended-spectrum cephalosporins by year and acute care setting.Figure 2.% Resistance to fluoroquinolones by year and acute care setting.Figure 3.% Resistance to trimethoprim-sulfamethoxazole by year and acute care setting. Conclusion Resistance to TMP-SX in both CO-INPT and OBS/ED, and FLQ in CO-INPT, was elevated suggesting alternative empiric therapy might be necessary for CO-UTI presenting to hospitals. Increasing resistance to ESC among pathogens in CO-INPT cultures warrants further evaluation of local resistance levels. Gender and need for inpatient therapy are factors to consider in developing local treatment recommendations. Disclosures All Authors: No reported disclosures.
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- 2022
172. Comparison of Satellite-Based Sea Surface Temperature to In Situ Observations Surrounding Coral Reefs in La Parguera, Puerto Rico
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Andrea M. Gomez, Kyle C. McDonald, Karsten Shein, Stephanie DeVries, Roy A. Armstrong, William J. Hernandez, and Milton Carlo
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satellite SST ,in situ ,coral reefs ,Naval architecture. Shipbuilding. Marine engineering ,VM1-989 ,Oceanography ,GC1-1581 - Abstract
Coral reefs are among the most biologically diverse ecosystems on Earth. In the last few decades, a combination of stressors has produced significant declines in reef expanse, with declining reef health attributed largely to thermal stresses. We investigated the correspondence between time-series satellite remote sensing-based sea surface temperature (SST) datasets and ocean temperature monitored in situ at depth in coral reefs near La Parguera, Puerto Rico. In situ temperature data were collected for Cayo Enrique and Cayo Mario, San Cristobal, and Margarita Reef. The three satellite-based SST datasets evaluated were NOAA’s Coral Reef Watch (CoralTemp), the UK Meteorological Office’s Operational SST and Sea Ice Analysis (OSTIA), and NASA’s Jet Propulsion Laboratory (G1SST). All three satellite-based SST datasets assessed displayed a strong positive correlation (>0.91) with the in situ temperature measurements. However, all SST datasets underestimated the temperature, compared with the in situ measurements. A linear regression model using the SST datasets as the predictor for the in situ measurements produced an overall offset of ~1 °C for all three SST datasets. These results support the use of all three SST datasets, after offset correction, to represent the temperature regime at the depth of the corals in La Parguera, Puerto Rico.
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- 2020
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173. Generating Co-occurring Facial Nonmanual Signals in Synthesized American Sign Language.
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Jerry Schnepp, Rosalee J. Wolfe, John C. McDonald 0001, and Jorge Toro
- Published
- 2013
174. PARP1 Gene Variation and Microglial Activity on [11C]PBR28 PET in Older Adults at Risk for Alzheimer's Disease.
- Author
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Sungeun Kim, Kwangsik Nho, Shannon L. Risacher, Mark Inlow, Shanker Swaminathan, Karmen K. Yoder, Li Shen 0001, John D. West, Brenna C. McDonald, Eileen F. Tallman, Gary D. Hutchins, James W. Fletcher, Martin R. Farlow, Bernardino Ghetti, and Andrew J. Saykin
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- 2013
- Full Text
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175. Plasticity Through Canalization: The Contrasting Effect of Temperature on Trait Size and Growth in Drosophila
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Jeanne M. C. McDonald, Shampa M. Ghosh, Samuel J. L. Gascoigne, and Alexander W. Shingleton
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Size control ,thermal plasticity ,temperature-size-rule ,cell proliferation ,imaginal disks ,body proportion ,Biology (General) ,QH301-705.5 - Abstract
In most ectotherms, a reduction in developmental temperature leads to an increase in body size, a phenomenon known as the temperature size rule (TSR). In Drosophila melanogaster, temperature affects body size primarily by affecting critical size, the point in development when larvae initiate the hormonal cascade that stops growth and starts metamorphosis. However, while the thermal plasticity of critical size can explain the effect of temperature on overall body size, it cannot entirely account for the effect of temperature on the size of individual traits, which vary in their thermal sensitivity. Specifically, the legs and male genitalia show reduced thermal plasticity for size, while the wings show elevated thermal plasticity, relative to overall body size. Here, we show that these differences in thermal plasticity among traits reflect, in part, differences in the effect of temperature on the rates of cell proliferation during trait growth. Counterintuitively, the elevated thermal plasticity of the wings is due to canalization in the rate of cell proliferation across temperatures. The opposite is true for the legs. These data reveal that environmental canalization at one level of organization may explain plasticity at another, and vice versa.
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- 2018
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176. Development of SMAP (soil moisture active and passive) Freeze/Thaw algorithms adapted for the Canadian Tundra.
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Parvin Kalantari, Monique Bernier, Kyle C. McDonald, and Jimmy Poulin
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- 2012
- Full Text
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177. Impact of taxane-based chemotherapy among older women with breast cancer on cognition and quality of life: a longitudinal pooled analysis
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Jeanne S. Mandelblatt, Martine Extermann, Tim A. Ahles, Judith E. Carroll, Kathleen Van Dyk, Harvey J. Cohen, Wanting Zhai, Deena Graham, Brent J. Small, Marie Lange, Florence Joly, James C. Root, Brenna C. McDonald, Heather S.L. Jim, Xingtao Zhou, Andrew J. Saykin, Jaeil Ahn, Natacha Heutte, and Sunita K. Patel
- Subjects
Bridged-Ring Compounds ,Oncology ,Cancer Research ,medicine.medical_specialty ,Breast Neoplasms ,Article ,Cognition ,Breast cancer ,Quality of life ,Internal medicine ,medicine ,Humans ,Prospective Studies ,Effects of sleep deprivation on cognitive performance ,Cognitive decline ,Prospective cohort study ,Aged ,Taxane ,business.industry ,Cancer ,medicine.disease ,Quality of Life ,Female ,Taxoids ,business - Abstract
PURPOSE: Older cancer patients are susceptible to long-term effects of chemotherapy, including cancer-related cognitive decline and impairments to quality of life. Taxane-based chemotherapies are associated with physical declines among older women and may negatively impact cognitive performance. We sought to examine whether changes in objective and subjective measures of cognitive performance and well-being differ among older breast cancer survivors as a function of taxane-based chemotherapy treatment regimens. METHODS: Individual-level data was pooled and harmonized from two large prospective studies of older (greater than 60 years) breast cancer survivors. Assessments were conducted prior to systemic therapy and up to 36-months after. Cognitive performance was assessed with objective (working memory, processing speed and executive functions) and subjective tests and physical, emotional and functional well-being was also assessed. RESULTS: One hundred and sixty-seven (M age = 67.3 years) women, with 116 receiving chemotherapy with taxanes and 51 without taxanes contributed data. Declines in subjective cognition for both groups were significant between pre-treatment and 12-month follow-up. Significant improvements were seen on a measure of objective cognition (working memory) from 12 to 36-months. Measures of well-being improved from prior to systemic therapy to 12-months. Longitudinal changes across all measures did not vary as a function of receipt of taxane-based treatment. CONCLUSION: Older women who received treatment with taxanes did not have greater declines in cognitive performance or well-being than women receiving other chemotherapy regimens. Despite older cancer survivors being at greater risk for negative outcomes, treatment with taxane-based chemotherapies does not appear to exacerbate these health consequences.
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- 2021
178. Use of a Novel EEG-Based Objective Test, the Cognalyzer®, in Quantifying the Strength and Determining the Action Time of Cannabis Psychoactive Effects and Factors that May Influence Them Within an Observational Study Framework
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Najla Guthrie, Israel Gasperin Haaz, Alison C. McDonald, Weikai Qi, Dan Bosnyak, Malkanthi Evans, and David C. Crowley
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Drug ,medicine.diagnostic_test ,biology ,business.industry ,media_common.quotation_subject ,Subgroup analysis ,Electroencephalography ,biology.organism_classification ,Neurology ,Pharmacodynamics ,medicine ,Objective test ,Drug test ,Observational study ,Neurology (clinical) ,Cannabis ,business ,Clinical psychology ,media_common - Abstract
Current methods to detect recent delta-9-tetrahydrocannabinol (THC) use cannot objectively quantify its psychoactive effects (PE). The Cognalyzer®, an electroencephalography (EEG)-based method, detects and quantifies the strength of THC-induced PE on a scale from 0 to 100%. This study assesses the relationship between the magnitude of Cognalyzer® PE predictions and reported subjective drug effects for 4-h post-cannabis inhalation. Seventy-five participants were enrolled in the study. Prior to ad libitum cannabis inhalation, an EEG recording episode was completed. Immediately after inhalation, the Drug Effects Questionnaire (DEQ) was administered and another EEG recording performed. For 25 participants, the study ended. For 50 participants, assessments were repeated at 30-min intervals for 4 h. EEG files were blinded and analyzed using two versions of the Cognalyzer® algorithm. The relationship between the Cognalyzer® PE level results and the DEQ was assessed using generalized linear models and multiple regression. There were significant PE increases from pre-cannabis for up to 3.5 h. Mean reports of feeling drug effects were > 0 at all post-inhalation time points (p ≤ 0.024). Furthermore, there were significant relationships between the Cognalyzer® PE and self-reported perception of drug effects (p ≤ 0.001). Subgroup analysis showed that Cognalyzer® PE levels were impacted by cannabis use history, subjective ratings of drug effects, oral fluid THC concentration and the cannabis product inhaled. The findings show that the Cognalyzer® can be used to objectively determine the strength of cannabis psychoactive effects that cannabis products create on consumers and how it changes depending on their experience with cannabis. The Cognalyzer® can be used to conduct scientific consumer research to generate trustworthy informational material about the psychoactive experience of cannabis products. For clinical research, the Cognalyzer® can be used to study the pharmacodynamics of cannabinoids or delivery systems, such as nano-emulsifications.
- Published
- 2021
179. Cyclotrimerization of Acetylene under Thermal Conditions: Gas-Phase Kinetics of V+ and Fe+ + C2H2
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Shaun G. Ard, Nicholas S. Shuman, Brendan C. Sweeny, David C. McDonald, and Albert A. Viggiano
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chemistry.chemical_compound ,Acetylene ,chemistry ,Ligand ,Torr ,Kinetics ,Physical chemistry ,Vanadium ,chemistry.chemical_element ,Molecule ,Physical and Theoretical Chemistry ,Benzene ,Catalysis - Abstract
The kinetics of successive reactions of acetylene (C2H2) initiated on either vanadium or iron atomic cations have been investigated under thermal conditions using the variable-ion source and temperature-adjustable selected-ion flow tube apparatus. Consistent with the literature results, the reaction of Fe+ + C2H2 primarily yields Fe+(m/z = (C2H2)3); however, analysis via quantum chemical calculations and statistical modeling shows that the mechanism does not form benzene upon the third acetylene addition. The kinetics are more consistent with successive addition of three acetylene molecules, yielding Fe+(C2H2)3, followed by an addition of a fourth acetylene molecule, initiating cyclotrimerization, yielding either Fe+(C2H2) + neutral benzene or Fe+(Bz) + acetylene, where Bz is a benzene ligand. In contrast, the reaction of V+ + C2H2 yields products via successive associations V+(m/z = (C2H2)n) either with or without a bimolecular step involving loss of one H2 and V+C2(m/z = (C2H2)m), where n and m extend at least up to 11 under conditions of 0.32 Torr at 300 K. Stabilized V+(Bz) is not a significant intermediate in the association mechanism. We propose a plausible mechanism for the generation of neutral benzene in this reaction and compare with the Fe+ results. The reaction steps that produce benzene result in turnover of the single-atom catalyst, and the large hydrocarbons produced that remain associated to the catalyst are proposed to be polycyclic aromatic hydrocarbons.
- Published
- 2021
180. A Randomized, Triple-Blind, Placebo-Controlled, Crossover Study to Investigate the Efficacy of a Single Dose of AlphaWave® l-Theanine on Stress in a Healthy Adult Population
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Lora Xiong, Najla Guthrie, Alison C. McDonald, Malkanthi Evans, and David C. Crowley
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Relaxation (psychology) ,business.industry ,Alpha (ethology) ,Placebo ,Crossover study ,Blood pressure ,Neurology ,Anesthesia ,Heart rate ,Medicine ,Anxiety ,Neurology (clinical) ,medicine.symptom ,business ,Adverse effect - Abstract
Stress is a complex life occurrence essential for survival and goal achievement but can be damaging in excess. Because of the high prevalence of stress in North America, a safe supplement that effectively reduces stress is in demand. The objective of this study was to investigate the efficacy and safety of AlphaWave® l-Theanine on whole-scalp and frontal alpha power, midline theta power, and salivary cortisol in healthy, moderately stressed adults. This was a randomized, triple-blind, placebo-controlled, crossover study that consisted of two study periods with a 7-day washout. A single dose of AlphaWave® l-Theanine (200 mg) or placebo was administered. To induce stress, a mental arithmetic test (MAT) was administered before and after the dose. Electroencephalogram, salivary cortisol, blood pressure, heart rate, self-reported stress, adverse events, clinical chemistry, and hematology were assessed to evaluate efficacy and safety. Increases in heart rate, blood pressure, and self-reported stress and state anxiety indicated that participants experienced stress during the MAT. AlphaWave® l-Theanine led to a greater increase in frontal region and whole-scalp alpha power 3 h post-dose compared to placebo (p ≤ 0.050). Within groups, there were increases in alpha power, at 3 h with AlphaWave® l-Theanine, over the whole recording and during the eyes-open portions (p ≤ 0.048) of the alpha task. The changes in alpha wave activity are supported by greater decreases in salivary cortisol 1 h post-dose (p
- Published
- 2021
181. Medical care disruptions during the first six months of the COVID-19 pandemic: the experience of older breast cancer survivors
- Author
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K Van Dyk, Sunita K. Patel, J E Carroll, Andrew J. Saykin, Brent J. Small, Danielle Tometich, Traci N. Bethea, Jaeil Ahn, Jeanne S. Mandelblatt, Tim A. Ahles, Deena Graham, Kelly E. Rentscher, Heather S.L. Jim, Brenna C. McDonald, James C. Root, Xingtao Zhou, Harvey J. Cohen, Asma A. Dilawari, Wanting Zhai, and Zev M. Nakamura
- Subjects
Cancer Research ,Pediatrics ,medicine.medical_specialty ,Breast Neoplasms ,Logistic regression ,Article ,Social support ,breast cancer ,Breast cancer ,Cancer Survivors ,medicine ,Humans ,Medical prescription ,Pandemics ,older adults ,Depression (differential diagnoses) ,COVID ,Aged ,Aged, 80 and over ,Response rate (survey) ,SARS-CoV-2 ,business.industry ,Mortality rate ,COVID-19 ,medical care disruptions ,Middle Aged ,medicine.disease ,Clinical Trial ,Comorbidity ,Oncology ,Female ,business ,Psychosocial ,Demography - Abstract
PurposeOlder cancer survivors required medical care during the COVID-19 pandemic despite infection risks, but there are limited data on medical care in this age group. Methods. We evaluated care disruptions in a longitudinal cohort of non-metastatic breast cancer survivors ages 60-98 from five US regions (n=321). Survivors completed a web-based or telephone survey from May 27, 2020 to September 11, 2020. Care disruptions included self-reported interruptions in ability to see doctors, receive treatment or supportive therapies, or fill prescriptions. Logistic regression models evaluated bivariate and multivariate associations between care disruptions and education, medical, psychosocial and COVID-19-related factors. Multivariate models included age, county COVID-19 rates, comorbidity and post-diagnosis time. Results. There was a high response rate (n=262, 81.6%). Survivors were 32.2 months post-diagnosis (SD 17.5, range 4-73). Nearly half (48%) reported a medical disruption. The unadjusted odds of care disruptions were significantly higher with more education (OR 1.23 per one-year increase, 95% CI 1.09-1.39, p =0.001) and greater depression (OR 1.04 per one-point increase in CES-D score, CI 1.003-1.08, p=0.033); tangible support decreased the odds of disruptions (OR 0.99, 95% CI 0.97-0.99 per one-point increase, p=0.012). There was a trend for associations between disruptions and comorbidity (unadjusted OR 1.13 per 1 added comorbidity, 95% CI 0.99-1.29, p=0.07). Adjusting for covariates, only higher education (p=0.001) and tangible social support (p=0.006) remained significantly associated with having care disruptions. Conclusions. Older breast cancer survivors reported high rates of medical care disruptions during the COVID-19 pandemic and psychosocial factors were associated with care disruptions.
- Published
- 2021
182. WETCHIMP-WSL: intercomparison of wetland methane emissions models over West Siberia
- Author
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T. J. Bohn, J. R. Melton, A. Ito, T. Kleinen, R. Spahni, B. D. Stocker, B. Zhang, X. Zhu, R. Schroeder, M. V. Glagolev, S. Maksyutov, V. Brovkin, G. Chen, S. N. Denisov, A. V. Eliseev, A. Gallego-Sala, K. C. McDonald, M. A. Rawlins, W. J. Riley, Z. M. Subin, H. Tian, Q. Zhuang, and J. O. Kaplan
- Subjects
Ecology ,QH540-549.5 ,Life ,QH501-531 ,Geology ,QE1-996.5 - Abstract
Wetlands are the world's largest natural source of methane, a powerful greenhouse gas. The strong sensitivity of methane emissions to environmental factors such as soil temperature and moisture has led to concerns about potential positive feedbacks to climate change. This risk is particularly relevant at high latitudes, which have experienced pronounced warming and where thawing permafrost could potentially liberate large amounts of labile carbon over the next 100 years. However, global models disagree as to the magnitude and spatial distribution of emissions, due to uncertainties in wetland area and emissions per unit area and a scarcity of in situ observations. Recent intensive field campaigns across the West Siberian Lowland (WSL) make this an ideal region over which to assess the performance of large-scale process-based wetland models in a high-latitude environment. Here we present the results of a follow-up to the Wetland and Wetland CH4 Intercomparison of Models Project (WETCHIMP), focused on the West Siberian Lowland (WETCHIMP-WSL). We assessed 21 models and 5 inversions over this domain in terms of total CH4 emissions, simulated wetland areas, and CH4 fluxes per unit wetland area and compared these results to an intensive in situ CH4 flux data set, several wetland maps, and two satellite surface water products. We found that (a) despite the large scatter of individual estimates, 12-year mean estimates of annual total emissions over the WSL from forward models (5.34 ± 0.54 Tg CH4 yr−1), inversions (6.06 ± 1.22 Tg CH4 yr−1), and in situ observations (3.91 ± 1.29 Tg CH4 yr−1) largely agreed; (b) forward models using surface water products alone to estimate wetland areas suffered from severe biases in CH4 emissions; (c) the interannual time series of models that lacked either soil thermal physics appropriate to the high latitudes or realistic emissions from unsaturated peatlands tended to be dominated by a single environmental driver (inundation or air temperature), unlike those of inversions and more sophisticated forward models; (d) differences in biogeochemical schemes across models had relatively smaller influence over performance; and (e) multiyear or multidecade observational records are crucial for evaluating models' responses to long-term climate change.
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- 2015
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183. Animal-Associated Exposure to Rabies Virus among Travelers, 1997–2012
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Philippe Gautret, Kira Harvey, Prativa Pandey, Poh Lian Lim, Karin Leder, Watcharapong Piyaphanee, Marc Shaw, Susan C. McDonald, Eyal Meltzer, Douglas H. Esposito, and Philippe Parola
- Subjects
rabies ,animal-related exposure ,travel ,GeoSentinel ,viruses ,rabies virus ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Among travelers, rabies cases are rare, but animal bites are relatively common. To determine which travelers are at highest risk for rabies, we studied 2,697 travelers receiving care for animal-related exposures and requiring rabies postexposure prophylaxis at GeoSentinel clinics during 1997–2012. No specific demographic characteristics differentiated these travelers from other travelers seeking medical care, making it challenging to identify travelers who might benefit from reinforced pretravel rabies prevention counseling. Median travel duration was short for these travelers: 15 days for those seeking care after completion of travel and 20 days for those seeking care during travel. This finding contradicts the view that preexposure rabies vaccine recommendations should be partly based on longer travel durations. Over half of exposures occurred in Thailand, Indonesia, Nepal, China, and India. International travelers to rabies-endemic regions, particularly Asia, should be informed about potential rabies exposure and benefits of pretravel vaccination, regardless of demographics or length of stay.
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- 2015
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184. The Impact of Volatile Chemical Products, Other VOCs, and NO x on Peak Ozone in the Lake Michigan Region
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Maryam Abdi‐Oskouei, Behrooz Roozitalab, Charles O. Stanier, Megan Christiansen, Gabriele Pfister, R. Bradley Pierce, Brian C. McDonald, Zac Adelman, Mark Janseen, Angela F. Dickens, and Gregory R. Carmichael
- Subjects
Atmospheric Science ,Geophysics ,Space and Planetary Science ,Earth and Planetary Sciences (miscellaneous) - Published
- 2022
185. Ammonium adduct chemical ionization to investigate anthropogenic oxygenated gas-phase organic compounds in urban air
- Author
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Peeyush Khare, Jordan E. Krechmer, Jo E. Machesky, Tori Hass-Mitchell, Cong Cao, Junqi Wang, Francesca Majluf, Felipe Lopez-Hilfiker, Sonja Malek, Will Wang, Karl Seltzer, Havala O. T. Pye, Roisin Commane, Brian C. McDonald, Ricardo Toledo-Crow, John E. Mak, and Drew R. Gentner
- Subjects
Atmospheric Science - Abstract
Volatile chemical products (VCPs) and other non-combustion-related sources have become important for urban air quality, and bottom-up calculations report emissions of a variety of functionalized compounds that remain understudied and uncertain in emissions estimates. Using a new instrumental configuration, we present online measurements of oxygenated organic compounds in a US megacity over a 10 d wintertime sampling period, when biogenic sources and photochemistry were less active. Measurements were conducted at a rooftop observatory in upper Manhattan, New York City, USA using a Vocus chemical ionization time-of-flight mass spectrometer, with ammonium (NH4+) as the reagent ion operating at 1 Hz. The range of observations spanned volatile, intermediate-volatility, and semi-volatile organic compounds, with targeted analyses of ∼150 ions, whose likely assignments included a range of functionalized compound classes such as glycols, glycol ethers, acetates, acids, alcohols, acrylates, esters, ethanolamines, and ketones that are found in various consumer, commercial, and industrial products. Their concentrations varied as a function of wind direction, with enhancements over the highly populated areas of the Bronx, Manhattan, and parts of New Jersey, and included abundant concentrations of acetates, acrylates, ethylene glycol, and other commonly used oxygenated compounds. The results provide top-down constraints on wintertime emissions of these oxygenated and functionalized compounds, with ratios to common anthropogenic marker compounds and comparisons of their relative abundances to two regionally resolved emissions inventories used in urban air quality models.
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- 2022
186. Current concepts in the management of radial head fractures: a national survey and review of the literature
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A Barakat, C Mcdonald, and H Singh
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Surgery ,General Medicine - Abstract
Introduction This study aims to report on current practice in the management of radial head fractures (RHFs) in the United Kingdom and to review the literature to identify areas for future investigation. Methods A 12-question online survey was sent to 500 surgeon members of the British Elbow and Shoulder Society in 2021. Questions focused on clinical assessment, indications for surgical treatment and willingness to participate in future studies. Descriptive statistical analysis summarised the responses. Results The response rate was 20.4% (n = 102). For minimally displaced RHFs, non-operative management with immediate mobilisation was reported by 90.2% (n = 92) as opposed to 9.8% (n = 10) for initial immobilisation in plaster or brace. The most cited indication for radial head arthroplasty as opposed to fixation was increased patient age or low functional demand in 69.9% of responses (n = 71). In total, 41.2% (n = 42) indicated the need for a future randomised controlled trial (RCT) concerning the management of RHF. Only five RCTs were returned by the literature review. Discussion There is considerable variability in the management of RHF among an experienced cohort of surgeons. With the interest declared by the participating surgeons, there is a call for a well-designed sufficiently powered RCT.
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- 2022
187. Amyloid and Tau Pathology are Associated with Cerebral Blood Flow in a Mixed Sample of Nondemented Older Adults with and without Vascular Risk Factors for Alzheimer’s Disease
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Cecily G. Swinford, Shannon L. Risacher, Aaron Vosmeier, Rachael Deardorff, Evgeny J. Chumin, Mario Dzemidzic, Yu-Chien Wu, Sujuan Gao, Brenna C. McDonald, Karmen K. Yoder, Frederick W. Unverzagt, Sophia Wang, Martin R. Farlow, Jared R. Brosch, David G. Clark, Liana G. Apostolova, Justin Sims, Danny J. Wang, and Andrew J. Saykin
- Abstract
Alzheimer’s disease (AD) is the leading cause of dementia in individuals over 65 in the U.S. Prevalence is projected to double by 2050, but current treatments cannot stop the progression of AD. Treatments administered before severe cognitive decline may be effective; identification of biomarkers for preclinical and prodromal stages of AD is therefore imperative. Cerebral blood flow (CBF) is a potential early biomarker for AD; generally, older adults with AD have decreased CBF compared to normally aging peers. Characterization should include the relationships between CBF and AD risk factors and pathologies. We assessed the relationships between CBF quantified by arterial spin labeled MRI, hypertension,APOEε4, and tau and amyloid PET in 77 older adults: cognitively normal, subjective cognitive decline, and mild cognitive impairment. Tau and amyloid aggregation were related to altered CBF, and some of these relationships were dependent on hypertension orAPOEε4 status. Our findings suggest a complex relationship between risk factors, AD pathologies, and CBF that warrants future studies of CBF as a potential early biomarker for AD.
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- 2022
188. The Dimensions of Attila the Hun
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William C. McDonald
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German ,Attila ,Medieval history ,History ,biology ,Early modern period ,Indo-European languages ,language ,General Medicine ,Ancient history ,biology.organism_classification ,language.human_language - Abstract
For well over a millennium after his death in the fifth century, Attila the Hun was victim to calumnious artistic and verbal representations as the quintessential barbarian and Other. Some historians defamed him a half-human. Others slandered his name by adapting a brief corporeal catalog compiled by Jordanes in the Getica (c. 551), a history of the Goths. Jordanes’ pejorative assessment of Attila’s supposed physical characteristics (arrogant gait and gaze, snub nose, alleged offensive skin pigmentation) served later chroniclers as an explanation for the failures and successes of Attila, helping to influence reader perception. Medieval and early modern representations of Attila call to mind the campaign against Tamerlane in art and print. Here are gathered for the first time several early German versions of the physical features of Attila, as transmitted by Jordanes.
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- 2021
189. Quality Assurance of Image Registration Using Combinatorial Rigid Registration Optimization (CORRO)
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David Solis, Gary C. McDonald, Afua A. Yorke, and T.M. Guerrero
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business.industry ,Computer science ,Image registration ,Ocean Engineering ,Computer vision ,Artificial intelligence ,business ,Quality assurance - Abstract
Purpose: Expert selected landmark points on clinical image pairs to provide a basis for rigid registration validation. Using combinatorial rigid registration optimization (CORRO) provide a statistically characterized reference data set for image registration of the pelvis by estimating optimal registration. Materials ad Methods: Landmarks for each CT/CBCT image pair for 58 cases were identified. From the landmark pairs, combination subsets of k-number of landmark pairs were generated without repeat, forming k-set for k=4, 8, and 12. A rigid registration between the image pairs was computed for each k-combination set (2,000-8,000,000). The mean and standard deviation of the registration were used as final registration for each image pair. Joint entropy was used to validate the output results. Results: An average of 154 (range: 91-212) landmark pairs were selected for each CT/CBCT image pair. The mean standard deviation of the registration output decreased as the k-size increased for all cases. In general, the joint entropy evaluated was found to be lower than results from commercially available software. Of all 58 cases 58.3% of the k=4, 15% of k=8 and 18.3% of k=12 resulted in the better registration using CORRO as compared to 8.3% from a commercial registration software. The minimum joint entropy was determined for one case and found to exist at the estimated registration mean in agreement with the CORRO algorithm. Conclusion: The results demonstrate that CORRO works even in the extreme case of the pelvic anatomy where the CBCT suffers from reduced quality due to increased noise levels. The estimated optimal registration using CORRO was found to be better than commercially available software for all k-sets tested. Additionally, the k-set of 4 resulted in overall best outcomes when compared to k=8 and 12, which is anticipated because k=8 and 12 are more likely to have combinations that affected the accuracy of the registration.
- Published
- 2021
190. Repositioning students as co-creators of curriculum for online learning resources
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Heath McGowan, Ryan Naylor, Hassan Khosravi, Mollie Dollinger, and Aaron C. McDonald
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Online engagement ,Preparedness ,Online learning ,Mathematics education ,Co-creation ,Subject (documents) ,Student engagement ,Peer learning ,Psychology ,Curriculum ,Uncategorized ,Education - Abstract
Amid increasing calls for universities to transition to online learning, there is a need to explore how platforms and technology can provide positive student experiences and support learning. In this paper, we discuss the implementation of an online peer learning and recommender platform in a large, multi-campus, first-year health subject (n = 2095). The Recommendation in Personalised Peer Learning Environments (RiPPLE) platform supports student’s co-creation of learning resources and allows for students to provide feedback and rate their peers’ submissions. Our results indicated that both student engagement and academic performance were positively impacted for users by the introduction of the RiPPLE platform, but that academic preparedness, in the form of students’ ATAR scores, strongly influenced their engagement and the benefits received. Implications for practice or policy: We explored if students were willing to co-create learning resources online. Our study piloted an online platform known as Recommendation in Personalised Peer Learning Environments (RiPPLE). Critical analysis provides insights into fostering online engagement and peer learning. We further offer recommendations for future practice on how to embed online student co-creation of curriculum.
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- 2021
191. Quantifying Methane and Ozone Precursor Emissions from Oil and Gas Production Regions across the Contiguous US
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Michael Trainer, Colby Francoeur, Joost A. de Gouw, Carsten Warneke, Stuart A. McKeen, Chelsea R. Thompson, Ilana B. Pollack, Jeff Peischl, Meng Li, Barbara Dix, Jessica B. Gilman, Brian C. McDonald, Thomas B. Ryerson, Gregory J. Frost, Steven S. Brown, and Kyle J. Zarzana
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chemistry.chemical_classification ,Air Pollutants ,Ozone ,business.industry ,Fossil fuel ,Greenhouse gas inventory ,General Chemistry ,Natural Gas ,010501 environmental sciences ,Atmospheric sciences ,01 natural sciences ,Methane ,chemistry.chemical_compound ,chemistry ,Environmental Chemistry ,Environmental science ,Oil and Gas Fields ,Volatile organic compound ,Nitrogen oxide ,business ,Air quality index ,NOx ,0105 earth and related environmental sciences - Abstract
We present an updated fuel-based oil and gas (FOG) inventory with estimates of nitrogen oxide (NOx) emissions from oil and natural gas production in the contiguous US (CONUS). We compare the FOG inventory with aircraft-derived ("top-down") emissions for NOx over footprints that account for ∼25% of US oil and natural gas production. Across CONUS, we find that the bottom-up FOG inventory combined with other anthropogenic emissions is on average within ∼10% of top-down aircraft-derived NOx emissions. We also find good agreement in the trends of NOx from drilling- and production-phase activities, as inferred by satellites and in the bottom-up inventory. Leveraging tracer-tracer relationships derived from aircraft observations, methane (CH4) and non-methane volatile organic compound (NMVOC) emissions have been added to the inventory. Our total CONUS emission estimates for 2015 of oil and natural gas are 0.45 ± 0.14 Tg NOx/yr, 15.2 ± 3.0 Tg CH4/yr, and 5.7 ± 1.7 Tg NMVOC/yr. Compared to the US National Emissions Inventory and Greenhouse Gas Inventory, FOG NOx emissions are ∼40% lower, while inferred CH4 and NMVOC emissions are up to a factor of ∼2 higher. This suggests that NMVOC/NOx emissions from oil and gas basins are ∼3 times higher than current estimates and will likely affect how air quality models represent ozone formation downwind of oil and gas fields.
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- 2021
192. Visio-Vestibular Deficits in Healthy Child and Adolescent Athletes
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Matthew F. Grady, Kristy B. Arbogast, Daniel J. Corwin, Fairuz Mohammed, Catherine C. McDonald, and Christina L. Master
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medicine.medical_specialty ,Adolescent ,Tandem gait ,Physical Therapy, Sports Therapy and Rehabilitation ,Neuropsychological Tests ,Article ,Smooth pursuit ,Concussion ,medicine ,Humans ,Attention deficit hyperactivity disorder ,Orthopedics and Sports Medicine ,Child ,Brain Concussion ,biology ,Post-Concussion Syndrome ,business.industry ,Athletes ,medicine.disease ,biology.organism_classification ,Cross-Sectional Studies ,Motion sickness ,Athletic Injuries ,Cohort ,Physical therapy ,Headaches ,medicine.symptom ,business ,Sports - Abstract
Objective To determine the relationship between patient characteristics and performance on the visio-vestibular examination (VVE) in a cohort of healthy youth athletes and explore the potential association between the VVE and other standardized concussion batteries. Design Cross-sectional. Setting Suburban middle and high school. Patients One hundred ninety subjects age 11 to 18 enrolled before their respective scholastic sport season between August 2017 and March 2020. Assessment of independent variables Patient age, sex, concussion history, comorbidities, hours of weekly exercise, Sport Concussion Assessment Tool, 5th edition (SCAT-5), King-Devick (K-D), Postconcussion Symptom Inventory (PCSI). Main outcome measures Visio-vestibular examination abnormalities (smooth pursuit, horizontal and vertical saccades, horizontal and vertical gaze stability, convergence, right and left monocular accommodation, complex tandem gait). Results Overall, 29.5% of subjects had at least one of 9 VVE elements abnormal, 7.9% at least 2, and 3.2% at least 3. None of 72 comparisons of the VVE elements, when stratified by age, sex, concussion history, history of headaches, attention deficit hyperactivity disorder, learning issues, psychiatric problems, motion sickness, or weekly hours of exercise, reached significance using the Benjamini-Hochberg procedure at a false discovery rate of 5%. There were no significant associations between VVE elements and the SCAT-5, K-D, or PCSI. Conclusions The VVE is robust across multiple patient characteristics. Although healthy subjects may have one abnormal element, multiple abnormal elements are a less common feature, making multiple abnormal elements more indicative of concussion, highlighting the use of this assessment in the setting of injury. The VVE tests unique domains when compared with the PCSI, SCAT-5, and K-D.
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- 2021
193. Loneliness and mental health during the COVID‐19 pandemic in older breast cancer survivors and noncancer controls
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Brent J. Small, Andrew J. Saykin, Jeanne S. Mandelblatt, Heather S.L. Jim, Deena Graham, Brenna C. McDonald, Judith E. Carroll, James C. Root, Asma A. Dilawari, Tim A. Ahles, Zev M. Nakamura, Harvey J. Cohen, Kelly E. Rentscher, Kathleen Van Dyk, Sunita K. Patel, Jaeil Ahn, Wanting Zhai, Xingtao Zhou, and Traci N. Bethea
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Gerontology ,Cancer Research ,Perceived Stress Scale ,Breast Neoplasms ,Anxiety ,Discipline ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,breast cancer ,Cancer Survivors ,Surveys and Questionnaires ,Pandemic ,medicine ,loneliness ,Humans ,030212 general & internal medicine ,psychological stress ,Pandemics ,Depression (differential diagnoses) ,older adults ,Aged ,Aged, 80 and over ,Psychosocial Oncology ,business.industry ,SARS-CoV-2 ,Mortality rate ,COVID-19 ,Loneliness ,Original Articles ,Middle Aged ,medicine.disease ,Mental health ,cancer survivorship ,Mental Health ,Oncology ,030220 oncology & carcinogenesis ,depression ,Original Article ,Female ,coronavirus disease 2019 (COVID‐19) ,medicine.symptom ,business - Abstract
Background The coronavirus disease 2019 (COVID‐19) pandemic has had wide‐ranging health effects and increased isolation. Older with cancer patients might be especially vulnerable to loneliness and poor mental health during the pandemic. Methods The authors included active participants enrolled in the longitudinal Thinking and Living With Cancer study of nonmetastatic breast cancer survivors aged 60 to 89 years (n = 262) and matched controls (n = 165) from 5 US regions. Participants completed questionnaires at parent study enrollment and then annually, including a web‐based or telephone COVID‐19 survey, between May 27 and September 11, 2020. Mixed‐effects models were used to examine changes in loneliness (a single item on the Center for Epidemiologic Studies–Depression [CES‐D] scale) from before to during the pandemic in survivors versus controls and to test survivor‐control differences in the associations between changes in loneliness and changes in mental health, including depression (CES‐D, excluding the loneliness item), anxiety (the State‐Trait Anxiety Inventory), and perceived stress (the Perceived Stress Scale). Models were adjusted for age, race, county COVID‐19 death rates, and time between assessments. Results Loneliness increased from before to during the pandemic (0.211; P = .001), with no survivor‐control differences. Increased loneliness was associated with worsening depression (3.958; P < .001) and anxiety (3.242; P < .001) symptoms and higher stress (1.172; P < .001) during the pandemic, also with no survivor‐control differences. Conclusions Cancer survivors reported changes in loneliness and mental health similar to those reported by women without cancer. However, both groups reported increased loneliness from before to during the pandemic that was related to worsening mental health, suggesting that screening for loneliness during medical care interactions will be important for identifying all older women at risk for adverse mental health effects of the pandemic., Older breast cancer survivors and matched noncancer controls experienced similar increases in loneliness from before to during the COVID‐19 pandemic. Women who reported increased loneliness also experienced worsening depression and anxiety symptoms and higher stress during the pandemic.
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- 2021
194. Brain Imaging in Pediatric Cancer Survivors: Correlates of Cognitive Impairment
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Ellen van der Plas, Charlotte Sleurs, Shelli R Kesler, Brenna C. McDonald, Sabine Deprez, and Brian J. Nieman
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Male ,Cancer Research ,Pediatrics ,medicine.medical_specialty ,Adolescent ,business.industry ,REVIEW ARTICLES ,MEDLINE ,Brain ,Infant ,Neuroimaging ,Pediatric cancer ,Cancer Survivors ,Oncology ,Child, Preschool ,medicine ,Humans ,Cognitive Dysfunction ,Female ,Child ,business ,Cognitive impairment - Published
- 2021
195. A71 POLYP TO ADENOMA CONVERSION FACTOR AS A SURROGATE FOR ADENOMA DETECTION RATE-– FINDINGS FROM THE SOUTHWEST ONTARIO COLONOSCOPY COHORT
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S Alobaid, C Mcdonald, L Guizzetti, B Yan, V Jairath, and M Sey
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Background The adenoma detection rate (ADR) is one of the main quality indicators of a colonoscopy but requires combining endoscopic and histologic data. However, the polyp detection rate (PDR) requires only endoscopic assessment and has been proposed as a proxy measure for the ADR. Aims To calculate a conversion factor for PDR to ADR, for use as a future surrogate of ADR when only PDR is available. Methods The Southwest Ontario Colonoscopy cohort consists of all outpatient colonoscopies performed across 20 hospitals in Southwestern Ontario between April 2017 and February 2018. Data was collected prospectively through a mandatory quality assurance form that was completed after each procedure and pathology reports were manually reviewed. Endoscopies with associated histologic findings were included. The PDR and true ADR were calculated for each physician. A weighted polyp to adenoma detection rate quotient (APDRQ) was calculated, weighting each physician’s APDRQ by the number of procedures performed. The APDRQ was determined for all outpatient procedures and specifically for screening/surveillance indications. Results During the study period, 57 endoscopists performed 31,721 colonoscopies. The overall PDR was 41.1% and the ADR was 26.5%. The weighted ADPDRQ was 0.638 (95% CI: 0.600, 0.675). When limited to screening/surveillance colonoscopies, the weighted ADPDR was 0.616 (95% CI: 0.564, 0.669). To better understand the influence of endoscopists with low ADR: PDR, we excluded those with ratio below ( Conclusions In this large, population-based, cohort study, we calculated the ADR; PDR ratio. We propose this may be used in future studies to infer ADR when only PDR is available. Scatter plot of correlation between ADR and PDR, by physician. The dashed line indicates the line for which ADR=PDR, the maximum value the ADR can take for a given PDR. The marker size is proportional to the number of colonoscopies performed. Funding Agencies None
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- 2022
196. Successful treatment of resistant scabies with oral ivermectin in an 8‐week‐old infant
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J, Wiggins, C, McDonald, and J E, Gach
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Scabies ,Ivermectin ,Antiparasitic Agents ,Administration, Topical ,Malathion ,Administration, Oral ,Humans ,Infant ,Drug Therapy, Combination ,Female ,Dermatology - Published
- 2021
197. A thousand-genome panel retraces the global spread and climatic adaptation of a major crop pathogen
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Alice Feurtey, Cécile Lorrain, Megan C. McDonald, Andrew Milgate, Peter Solomo, Rachael Warren, Guido Puccetti, Gabriel Scalliet, Stefano F. F. Torriani, Lilian Gout, Thierry C. Marcel, Frédéric Suffert, Julien Alassimone, Anna Lipzen, Yuko Yoshinaga, Christopher Daum, Kerrie Barry, Igor V. Grigoriev, Stephen B. Goodwin, Anne Genissel, Michael F. Seidl, Eva Stukenbrock, Marc-Henri Lebrun, Gert H. J. Kema, Bruce A. McDonald, and Daniel Croll
- Abstract
Human activity impacts the evolutionary trajectories of many species worldwide. Global trade of agricultural goods contributes to the dispersal of pathogens reshaping their genetic makeup and providing opportunities for virulence gains. Understanding how pathogens surmount control strategies and cope with new climates is crucial to predicting the future impact of crop pathogens. Here, we address this by assembling a global thousand-genome panel of Zymoseptoria tritici, a major fungal pathogen of wheat reported in all production areas worldwide. We identify the global invasion routes and ongoing genetic exchange of the pathogen among wheat-growing regions. We find that the global expansion was accompanied by increased activity of transposable elements and weakened genomic defenses. Finally, we find significant standing variation for adaptation to new climates encountered during the global spread. Our work shows how large population genomic panels enable deep insights into the evolutionary trajectory of a major crop pathogen.
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- 2022
198. Genome-wide association study reveals novel loci and a candidate gene for resistance to frogeye leaf spot (Cercospora sojina) in soybean
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Samuel C. McDonald, James Buck, Qijian Song, and Zenglu Li
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Genetics ,General Medicine ,Molecular Biology - Abstract
Frogeye leaf spot, caused by the fungus Cercospora sojina, is a threat to soybeans in the southeastern and midwestern United States that can be controlled by crop genetic resistance. Limited genetic resistance to the disease has been reported, and only three sources of resistance have been used in modern soybean breeding. To discover novel sources and identify the genomic locations of resistance that could be used in soybean breeding, a GWAS was conducted using a panel of 329 soybean accessions selected to maximize genetic diversity. Accessions were phenotyped using a 1-5 visual rating and by using image analysis to count lesion number and measure the percent of leaf area diseased. Eight novel loci on eight chromosomes were identified for three traits utilizing the FarmCPU or BLINK models, of which a locus on chromosome 11 was highly significant across all model-trait combinations. KASP markers were designed using the SoySNP50K Beadchip and variant information from 65 of the accessions that have been sequenced to target SNPs in the gene model Glyma.11g230400, a LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE. The association of a KASP marker, GSM990, designed to detect a missense mutation in the gene was the most significant with all three traits in a genome-wide association, and the marker may be useful to select for resistance to frogeye leaf spot in soybean breeding.
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- 2022
199. Comparison of Anxiety and Depression Symptoms in Concussed and Nonconcussed Adolescents
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Ari M. Fish, Julia Vanni, Fairuz N. Mohammed, Daniele Fedonni, Kristina B. Metzger, Jamie Shoop, Christina L. Master, Kristy B. Arbogast, and Catherine C. McDonald
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Physical Therapy, Sports Therapy and Rehabilitation ,Orthopedics and Sports Medicine - Abstract
Background: Few studies have examined psychiatric symptoms during the acute phase following a concussion in adolescents. Thus, this study compares anxiety and depression in acutely concussed and nonconcussed adolescents. Hypothesis: Acutely concussed adolescents will report greater anxiety and depressive symptoms compared with nonconcussed adolescents. Study Design: Prospective cohort study. Level of Evidence: Level 3. Methods: Data were collected from 282 adolescents (111 concussed within 28 days of injury, 171 nonconcussed), 13 to 18 years of age, who completed Patient-Reported Outcome Measurement Information System (PROMIS) Anxiety and Depressive Symptoms measures. We calculated average T-scores for anxiety and depression across both groups and compared the proportion of those who scored above normal limits. Finally, we calculated risk ratios for anxiety and depression scores above normal limits. Results: Average T-scores for anxiety did not differ in concussed versus nonconcussed adolescents (mean: 45.9 [SD 10.84] vs 45.2 [8.1], respectively, P = 0.54), whereas average T-scores for depression were significantly higher in concussed versus nonconcussed adolescents (46.0 [10.88] vs 42.8 [8.48], respectively, P < 0.01). The proportion of concussed adolescents above normal limits for depression was greater than nonconcussed adolescents (32.4% vs 20.5%, respectively, P = 0.02). Post hoc sensitivity analyses excluding those with a history of anxiety or depression demonstrated a 1.45 (95% CI, 0.97, 2.01) and 1.56 (95% CI, 0.95, 2.56) increased risk of an above-normal anxiety and depression score for concussed compared with nonconcussed adolescents, respectively, although both were nonsignificant. Conclusion: Although we found few significant differences between the 2 groups, the results highlight that many concussed adolescents met the threshold for above-average symptoms on the depression and anxiety PROMIS measures. Clinical Relevance: In adolescents, there is increased risk for psychiatric sequalae in the acute period after a concussion. As such, we suggest that clinicians consider incorporating depression screening when caring for adolescents after a concussion.
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- 2022
200. Health Behavior Changes during the COVID-19 Pandemic: A Longitudinal Analysis among Children
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Traci A. Bekelman, Yanan Dong, Amy J. Elliott, Assiamira Ferrara, Kaylyn Friesen, Maren Galarce, Diane Gilbert-Diamond, Deborah H. Glueck, Monique M. Hedderson, Christine W. Hockett, Margaret R. Karagas, Emily A. Knapp, Maristella Lucchini, Julia C. McDonald, Katherine A. Sauder, and Dana Dabelea
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Male ,Health, Toxicology and Mutagenesis ,Health Behavior ,Public Health, Environmental and Occupational Health ,COVID-19 ,Humans ,Female ,longitudinal ,disparities ,diet ,physical activity ,screen time ,sleep ,Longitudinal Studies ,Prospective Studies ,Child ,Pandemics - Abstract
This longitudinal study compared children’s health behaviors before the COVID-19 pandemic versus during the pandemic. This analysis examined the association between individual-level characteristics and health behavior change. Four prospective cohort studies in the Environmental influences on Child Health Outcomes (ECHO) Program contributed data. Children aged 4–12 years and their caregivers were recruited in California, Colorado, North Dakota, and New Hampshire. Dietary intake, physical activity, screen time, and sleep duration were assessed with questionnaires pre-pandemic and during the pandemic. The final sample included 347 children: 47% female and 62% non-Hispanic White. Compared with pre-pandemic, weekday screen time duration was higher during the pandemic (3.0 vs. 4.5 h, p < 0.001). Unadjusted increases in screen time duration differed by race and ethnicity: 1.3 h/day for non-Hispanic White children, 2.3 h/day for Hispanic children, and 5.3 h/day for non-Hispanic Black children. Overall, no changes occurred in sugar-sweetened beverage (SSB) intake (p = 0.26), discretionary food intake (p = 0.93), and physical activity (p = 0.15). Sleep duration increased by 30 min among children who did not meet sleep recommendations pre-pandemic. Child sex and maternal education level were not associated with health behavior change. The pandemic may have exacerbated disparities in some health behaviors. Families may need support to re-establish healthy routines.
- Published
- 2022
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