441 results on '"Ancuta, Petronela"'
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152. MOESM9 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
3. Good health - Abstract
Additional file 9. The four CCR6+ T-cell subsets isolated from HIV-infected subjects receiving ART preserve their Th17-polarizing profiles upon long term culture in vitro. (A) FACS-sorted Th17, Th1Th17 and Th1 subsets were stimulated with CD3/CD28 for four days then cultured in the presence of IL-2 (5 ng/ml) for an additional 9 days. At day 13, cells were stimulated with PMA and Ionomycin in the presence of Brefeldin A for 6 h. Intracellular staining was performed with cytokine-specific Abs. (B) Shown are flow cytometry dot plots illustrating the co-expression of IL-17A and IFNγ (n = 3). (C) Shown is the frequency of cytokine-expressing T-cells cultured long-term in vitro. Results (mean ± SEM) were generated with matches samples from n = 3 different donors. Paired t-Test p-values are indicated on the figures.
153. MOESM3 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, RĂŠmi Fromentin, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
3. Good health - Abstract
Additional file 3. GO classification of differentially expressed genes in 3 CCR6+ subsets. (A-B) Shown are Venn diagram representation of GSVA-generated canonical pathways (A) and biological functions (B), illustrating the number of differentially expressed pathways common or unique between Th17, CCR6+DN, and CCR6+DP. (C-F) Further, differentially expressed genes between (pÂ
154. MOESM6 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach
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AurĂŠlie Cleret-Buhot, Yuwei Zhang, Planas, Delphine, Jean-Philippe Goulet, Monteiro, Patricia, Gosselin, Annie, Wacleche, Vanessa, CĂŠcile Tremblay, Mohammad-Ali Jenabian, Routy, Jean-Pierre, El-Far, Mohamed, Chomont, Nicolas, Haddad, Elias, Rafick-Pierre Sekaly, and Ancuta, Petronela
- Subjects
3. Good health - Abstract
Additional file 6: Figure S3. A meta-analysis for transcripts included in the NCBI HIV Interaction data base that were identified as top differentially expressed between Th17 and Th1 subsets.
155. MOESM7 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
chemical and pharmacologic phenomena ,hemic and immune systems ,3. Good health - Abstract
Additional file 7. Phenotypic stability versus plasticity of the four central memory CCR6+ T-cell subsets under Th17- or Th1-polarizing conditions. FACS-sorted CM subsets were cultured under Th17- and Th1-polarizing conditions for 14 days, as described in Fig. 5A, stained with CCR6, CCR4, and CXCR3Abs and analyzed by FACS. Shown are the statistical analyses for the expression of (A) CCR6 (B) CCR4, and (C) CXCR3, and the co-expression of (D) CCR6 and CCR4 (R6+R4+ phenotype) and (E) CCR6 and CXCR3 (R6+X3+ phenotype) on each subsets at day 0 (white bars) versus day 14 in culture under Th17- (black bars) and Th1-polarizing (grey bars) conditions. (A-E) The positivity gates where defined based on fluorescence minus one (FMO) controls. Results (mean ± SEM) were generated with matched subsets from n = 3 distinct subjects. Paired t-Test p-values are indicated on the graphs.
156. MOESM5 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
- Author
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
chemical and pharmacologic phenomena ,hemic and immune systems ,3. Good health - Abstract
Additional file 5. Flow cytometry analysis of cytokine co-expression at single-cell level by CM subsets upon long-term culture under Th17 versus Th1 polarizing conditions. Central memory (CM) Th17, Th1Th17, CCR6+DN, CCR6+DP, and Th1 subsets were sorted and cultured for 14 days under Th17 or Th1 polarizing conditions, as described in Fig. 5. Shown are flow cytometry dot plots illustrating the co-expression of IL-17A with IL-17F, IL-22, IFN-γ or TNF-α for each Th17- or Th1-polarized subset. Results are from one donor representative of results generated with cells from three different donors. The positivity gates where defined based on fluorescence minus one (FMO) controls.
157. MOESM1 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
- Author
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
chemical and pharmacologic phenomena ,hemic and immune systems ,3. Good health - Abstract
Additional file 1. Purity of flow cytometry-sorted memory CD4+ T-cell subsets. Total CD4+ T-cells were isolated from PBMCs of healthy individuals by negative selection using magnetic beads (Miltenyi). Cells were stained with a cocktail of fluorochrome-conjugated Abs and analyzed by polychromatic flow cytometry (see Supplemental Experimental Procedure). Memory (CD45RA−) cells lacking the lineage-specific markers CD8 (CD8+ T-cells), CD19 (B cells), and CD56 (NK cells) and with differential expression of CCR6, CCR4, and CXCR3 were sorted by flow cytometry (BDAria II) as follows: CCR6+CCR4+CXCR3− (Th17), CCR6+CCR4−CXCR3− (CCR6+DN), CCR6+CCR4+CXCR3+ (CCR6+DP), CCR6+CCR4−CXCR3+ (Th1Th17) and CCR6−CCR4−CXCR3+ (Th1). A viability staining was used to exclude dead cells. The positivity gates where defined based on fluorescence minus one (FMO) controls. Shown is (A) the gating strategy for the identification of different subsets on CD4+ T-cells sorted by MACS and (B) purity upon FACS sorting of different memory T-cell subsets. The percentage of each subset is indicated on the figures. Results are from one donor representative of experiments performed with cells from >10 different donors. The positivity gates where defined based on fluorescence minus one (FMO) controls.
158. MOESM10 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
- Author
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
virus diseases ,hemic and immune systems ,3. Good health - Abstract
Additional file 10. All four CCR6+ T-cell subsets carry integrated HIV-DNA in viremic untreated HIV-infected subjects. The four memory CCR6+ subsets as well as naive cells from PBMCs of (A) HIV+ recently infected untreated (RI) (n = 3) and were sorted by FACS. Levels of integrated HIV-DNA were quantified by nested real-time PCR (mean ± SD of triplicate wells).
159. MOESM11 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
- Author
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
virus diseases ,chemical and pharmacologic phenomena ,hemic and immune systems ,3. Good health - Abstract
Additional file 11. Poly-functional profiles of HIV-p24+ CCR6+ T-cell subsets of HIV-infected individuals receiving ART upon viral reactivation in vitro. HIV reservoir reactivation was performed as described in Suppl. Figure 6 legend. Briefly, at day 13, cells were stimulated with PMA/Ionomycin in the presence of Brefeldin A and intracellular staining was performed with cytokine (IFN-γ, IL-17A, IL-22, TNF-α) and HIV-p24 Abs. Shown are bar graph representations generated with SPICE software for all possible combinations of one (blue), two (green), three (orange), and four (yellow), or no (purple) cytokines produced by HIV-p24+ Th17, Th1Th17, CCR6+DN, CCR6+DP and Th1 subsets (n = 3 CI on ART subjects). In contrast to CI on ART 5 and 6, for donor CI on ART 07 HIV reactivation was observed only for CCR6+DN (red).
160. Potential of metformin to modify the gut microbiota and prevent inflammation in nondiabetic people with HIV
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Isnard, Stephane, Lin, John, Frombuena, Brandon, Varin, Thibaut V., Marette, Andre, Planas, Delphine, Messaoudene, Meriem, Routy, Bertrand, Van der Ley, Claude, Kema, Ido, Ancuta, Petronela, Angel, Jonathan, Routy, Jean-Pierre, Guided Treatment in Optimal Selected Cancer Patients (GUTS), and Lifestyle Medicine (LM)
161. MOESM10 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
virus diseases ,hemic and immune systems ,3. Good health - Abstract
Additional file 10. All four CCR6+ T-cell subsets carry integrated HIV-DNA in viremic untreated HIV-infected subjects. The four memory CCR6+ subsets as well as naive cells from PBMCs of (A) HIV+ recently infected untreated (RI) (n = 3) and were sorted by FACS. Levels of integrated HIV-DNA were quantified by nested real-time PCR (mean ± SD of triplicate wells).
162. MOESM7 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach
- Author
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AurĂŠlie Cleret-Buhot, Yuwei Zhang, Planas, Delphine, Jean-Philippe Goulet, Monteiro, Patricia, Gosselin, Annie, Wacleche, Vanessa, CĂŠcile Tremblay, Mohammad-Ali Jenabian, Routy, Jean-Pierre, El-Far, Mohamed, Chomont, Nicolas, Haddad, Elias, Rafick-Pierre Sekaly, and Ancuta, Petronela
- Subjects
3. Good health - Abstract
Additional file 7: Figure S4. The T cell receptor signalling pathways was generated using the Ingenuity pathway analysis (IPA), with transcripts up and down regulated in Th17 versus Th1 subsets being highlighted in red and green, respectively.
163. MOESM8 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, RĂŠmi Fromentin, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
3. Good health - Abstract
Additional file 8. Table S2. Clinical parameters of chronically HIV-infected subjects under long-term viral suppressive ART (CI on ART). Table S3. Clinical parameters of the longitudinal cohort of HIV-infected subjects.
164. MOESM6 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
3. Good health - Abstract
Additional file 6. Poly-functional profiles of CM CCR6+ subsets upon long-term culture under Th17 versus Th1 polarizing conditions in vitro. FACS-sorted CM subsets were analyzed for the expression of lineage-specific cytokines upon Th17/Th1-polarization in vitro (Fig. 5). Shown are bar graph representations generated with SPICE software for all possible combinations of one (blue), two (green), three (orange), four (yellow), and five (red) or no (purple) cytokines produced by T-cell subsets upon culture in vitro (mean ± SEM), together with pie charts summarizing the polyfunctional profiles (median relative contribution, n = 3).
165. MOESM3 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
- Author
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, RĂŠmi Fromentin, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
3. Good health - Abstract
Additional file 3. GO classification of differentially expressed genes in 3 CCR6+ subsets. (A-B) Shown are Venn diagram representation of GSVA-generated canonical pathways (A) and biological functions (B), illustrating the number of differentially expressed pathways common or unique between Th17, CCR6+DN, and CCR6+DP. (C-F) Further, differentially expressed genes between (pÂ
166. MOESM1 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
- Author
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
chemical and pharmacologic phenomena ,hemic and immune systems ,3. Good health - Abstract
Additional file 1. Purity of flow cytometry-sorted memory CD4+ T-cell subsets. Total CD4+ T-cells were isolated from PBMCs of healthy individuals by negative selection using magnetic beads (Miltenyi). Cells were stained with a cocktail of fluorochrome-conjugated Abs and analyzed by polychromatic flow cytometry (see Supplemental Experimental Procedure). Memory (CD45RA−) cells lacking the lineage-specific markers CD8 (CD8+ T-cells), CD19 (B cells), and CD56 (NK cells) and with differential expression of CCR6, CCR4, and CXCR3 were sorted by flow cytometry (BDAria II) as follows: CCR6+CCR4+CXCR3− (Th17), CCR6+CCR4−CXCR3− (CCR6+DN), CCR6+CCR4+CXCR3+ (CCR6+DP), CCR6+CCR4−CXCR3+ (Th1Th17) and CCR6−CCR4−CXCR3+ (Th1). A viability staining was used to exclude dead cells. The positivity gates where defined based on fluorescence minus one (FMO) controls. Shown is (A) the gating strategy for the identification of different subsets on CD4+ T-cells sorted by MACS and (B) purity upon FACS sorting of different memory T-cell subsets. The percentage of each subset is indicated on the figures. Results are from one donor representative of experiments performed with cells from >10 different donors. The positivity gates where defined based on fluorescence minus one (FMO) controls.
167. MOESM6 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach
- Author
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AurĂŠlie Cleret-Buhot, Yuwei Zhang, Planas, Delphine, Jean-Philippe Goulet, Monteiro, Patricia, Gosselin, Annie, Wacleche, Vanessa, CĂŠcile Tremblay, Mohammad-Ali Jenabian, Routy, Jean-Pierre, El-Far, Mohamed, Chomont, Nicolas, Haddad, Elias, Rafick-Pierre Sekaly, and Ancuta, Petronela
- Subjects
3. Good health - Abstract
Additional file 6: Figure S3. A meta-analysis for transcripts included in the NCBI HIV Interaction data base that were identified as top differentially expressed between Th17 and Th1 subsets.
168. MOESM11 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
- Author
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
virus diseases ,chemical and pharmacologic phenomena ,hemic and immune systems ,3. Good health - Abstract
Additional file 11. Poly-functional profiles of HIV-p24+ CCR6+ T-cell subsets of HIV-infected individuals receiving ART upon viral reactivation in vitro. HIV reservoir reactivation was performed as described in Suppl. Figure 6 legend. Briefly, at day 13, cells were stimulated with PMA/Ionomycin in the presence of Brefeldin A and intracellular staining was performed with cytokine (IFN-γ, IL-17A, IL-22, TNF-α) and HIV-p24 Abs. Shown are bar graph representations generated with SPICE software for all possible combinations of one (blue), two (green), three (orange), and four (yellow), or no (purple) cytokines produced by HIV-p24+ Th17, Th1Th17, CCR6+DN, CCR6+DP and Th1 subsets (n = 3 CI on ART subjects). In contrast to CI on ART 5 and 6, for donor CI on ART 07 HIV reactivation was observed only for CCR6+DN (red).
169. MOESM5 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
- Author
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
chemical and pharmacologic phenomena ,hemic and immune systems ,3. Good health - Abstract
Additional file 5. Flow cytometry analysis of cytokine co-expression at single-cell level by CM subsets upon long-term culture under Th17 versus Th1 polarizing conditions. Central memory (CM) Th17, Th1Th17, CCR6+DN, CCR6+DP, and Th1 subsets were sorted and cultured for 14 days under Th17 or Th1 polarizing conditions, as described in Fig. 5. Shown are flow cytometry dot plots illustrating the co-expression of IL-17A with IL-17F, IL-22, IFN-γ or TNF-α for each Th17- or Th1-polarized subset. Results are from one donor representative of results generated with cells from three different donors. The positivity gates where defined based on fluorescence minus one (FMO) controls.
170. Additional file 4: of The Canadian HIV and aging cohort study - determinants of increased risk of cardio-vascular diseases in HIV-infected individuals: rationale and study protocol
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Durand, Madeleine, Chartrand-Lefebvre, Carl, Jean-Guy Baril, Trottier, Sylvie, Benoit Trottier, Harris, Marianne, Walmsley, Sharon, Conway, Brian, Wong, Alexander, Routy, Jean-Pierre, Kovacs, Colin, MacPherson, Paul, Monteith, Kenneth, Mansour, Samer, Thanassoulis, George, Abrahamowicz, Michal, Zhitong Zhu, Tsoukas, Christos, Ancuta, Petronela, Bernard, Nicole, and CĂŠcile Tremblay
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body regions ,nervous system ,fungi ,virus diseases ,3. Good health - Abstract
Detailed data collection form for the Canadian HIV and Aging Study. (PDF 830 kb)
171. The Canadian HIV and aging cohort study - determinants of increased risk of cardio-vascular diseases in HIV-infected individuals: rationale and study protocol
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Durand, Madeleine, Chartrand-Lefebvre, Carl, Baril, Jean-Guy, Trottier, Sylvie, Trottier, Benoit, Harris, Marianne, Walmsley, Sharon, Conway, Brian, Wong, Alexander, Routy, Jean-Pierre, Kovacs, Colin, MacPherson, Paul A, Monteith, Kenneth M, Mansour, Samer, Thanassoulis, George, Abrahamowicz, Michal, Zhu, Zhitong, Tsoukas, Christos, Ancuta, Petronela, Bernard, Nicole, and Tremblay, Cécile L
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3. Good health - Abstract
Background: With potent antiretroviral drugs, HIV infection is becoming a chronic disease. Emergence of comorbidities, particularly cardiovascular disease (CVD) has become a leading concern for patients living with the infection. We hypothesized that the chronic and persistent inflammation and immune activation associated with HIV disease leads to accelerated aging, characterized by CVD. This will translate into higher incidence rates of CVD in HIV infected participants, when compared to HIV negative participants, after adjustment for traditional CVD risk factors. When characterized further using cardiovascular imaging, biomarkers, immunological and genetic profiles, CVD associated with HIV will show different characteristics compared to CVD in HIV-negative individuals. Methods/design: The Canadian HIV and Aging cohort is a prospective, controlled cohort study funded by the Canadian Institutes of Health Research. It will recruit patients living with HIV who are aged 40 years or older or have lived with HIV for 15 years or more. A control population, frequency matched for age, sex, and smoking status, will be recruited from the general population. Patients will attend study visits at baseline, year 1, 2, 5 and 8. At each study visit, data on complete medical and pharmaceutical history will be captured, along with anthropometric measures, a complete physical examination, routine blood tests and electrocardiogram. Consenting participants will also contribute blood samples to a research biobank. The primary outcome is incidence of a composite of: myocardial infarction, coronary revascularization, stroke, hospitalization for angina or congestive heart failure, revascularization or amputation for peripheral artery disease, or cardiovascular death. Preplanned secondary outcomes are all-cause mortality, incidence of the metabolic syndrome, incidence of type 2 diabetes, incidence of renal failure, incidence of abnormal bone mineral density and body fat distribution. Patients participating to the cohort will be eligible to be enrolled in four pre-planned sub-studies of cardiovascular imaging, glucose metabolism, immunological and genetic risk profile. Discussion: The Canadian HIV and Aging Cohort will provide insights on pathophysiological pathways leading to premature CVD for patients living with HIV.
172. MOESM6 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
3. Good health - Abstract
Additional file 6. Poly-functional profiles of CM CCR6+ subsets upon long-term culture under Th17 versus Th1 polarizing conditions in vitro. FACS-sorted CM subsets were analyzed for the expression of lineage-specific cytokines upon Th17/Th1-polarization in vitro (Fig. 5). Shown are bar graph representations generated with SPICE software for all possible combinations of one (blue), two (green), three (orange), four (yellow), and five (red) or no (purple) cytokines produced by T-cell subsets upon culture in vitro (mean ± SEM), together with pie charts summarizing the polyfunctional profiles (median relative contribution, n = 3).
173. Additional file 4: of The Canadian HIV and aging cohort study - determinants of increased risk of cardio-vascular diseases in HIV-infected individuals: rationale and study protocol
- Author
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Durand, Madeleine, Chartrand-Lefebvre, Carl, Jean-Guy Baril, Trottier, Sylvie, Benoit Trottier, Harris, Marianne, Walmsley, Sharon, Conway, Brian, Wong, Alexander, Routy, Jean-Pierre, Kovacs, Colin, MacPherson, Paul, Monteith, Kenneth, Mansour, Samer, Thanassoulis, George, Abrahamowicz, Michal, Zhitong Zhu, Tsoukas, Christos, Ancuta, Petronela, Bernard, Nicole, and CĂŠcile Tremblay
- Subjects
body regions ,nervous system ,fungi ,virus diseases ,3. Good health - Abstract
Detailed data collection form for the Canadian HIV and Aging Study. (PDF 830 kb)
174. MOESM7 of Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach
- Author
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AurĂŠlie Cleret-Buhot, Yuwei Zhang, Planas, Delphine, Jean-Philippe Goulet, Monteiro, Patricia, Gosselin, Annie, Wacleche, Vanessa, CĂŠcile Tremblay, Mohammad-Ali Jenabian, Routy, Jean-Pierre, El-Far, Mohamed, Chomont, Nicolas, Haddad, Elias, Rafick-Pierre Sekaly, and Ancuta, Petronela
- Subjects
3. Good health - Abstract
Additional file 7: Figure S4. The T cell receptor signalling pathways was generated using the Ingenuity pathway analysis (IPA), with transcripts up and down regulated in Th17 versus Th1 subsets being highlighted in red and green, respectively.
175. MOESM4 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
- Author
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
chemical and pharmacologic phenomena ,hemic and immune systems ,3. Good health - Abstract
Additional file 4. Superior Th17-lineage commitment of CM versus EM Th17 and Th1Th17-subsets. FACS-sorted Th17, Th1Th17 and Th1 subsets with CM (CD45RA−CCR7+) and EM (CD45RA−CCR7−) phenotype were cultured for 14 days under Th17-polarizing conditions, as in Fig. 5. Shown are the statistical analyses of the intracellular expression of IL-17A, IL-17F, IL-22, IFN-γ and TNF-α by distinct Th17-polarized CM (black bars) versus EM (white bars) Th17, Th1Th17 and Th1 subsets. Results (mean ± SEM) were generated with matched samples from n = 3 different subjects. Paired t-test p-values are indicated in the figures (CM versus EM).
176. MOESM9 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
3. Good health - Abstract
Additional file 9. The four CCR6+ T-cell subsets isolated from HIV-infected subjects receiving ART preserve their Th17-polarizing profiles upon long term culture in vitro. (A) FACS-sorted Th17, Th1Th17 and Th1 subsets were stimulated with CD3/CD28 for four days then cultured in the presence of IL-2 (5 ng/ml) for an additional 9 days. At day 13, cells were stimulated with PMA and Ionomycin in the presence of Brefeldin A for 6 h. Intracellular staining was performed with cytokine-specific Abs. (B) Shown are flow cytometry dot plots illustrating the co-expression of IL-17A and IFNγ (n = 3). (C) Shown is the frequency of cytokine-expressing T-cells cultured long-term in vitro. Results (mean ± SEM) were generated with matches samples from n = 3 different donors. Paired t-Test p-values are indicated on the figures.
177. MOESM7 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
- Author
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Wacleche, Vanessa, Jean-Philippe Goulet, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Mohammad-Ali Jenabian, Shant Vartanian, Deeks, Steven, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
chemical and pharmacologic phenomena ,hemic and immune systems ,3. Good health - Abstract
Additional file 7. Phenotypic stability versus plasticity of the four central memory CCR6+ T-cell subsets under Th17- or Th1-polarizing conditions. FACS-sorted CM subsets were cultured under Th17- and Th1-polarizing conditions for 14 days, as described in Fig. 5A, stained with CCR6, CCR4, and CXCR3Abs and analyzed by FACS. Shown are the statistical analyses for the expression of (A) CCR6 (B) CCR4, and (C) CXCR3, and the co-expression of (D) CCR6 and CCR4 (R6+R4+ phenotype) and (E) CCR6 and CXCR3 (R6+X3+ phenotype) on each subsets at day 0 (white bars) versus day 14 in culture under Th17- (black bars) and Th1-polarizing (grey bars) conditions. (A-E) The positivity gates where defined based on fluorescence minus one (FMO) controls. Results (mean ± SEM) were generated with matched subsets from n = 3 distinct subjects. Paired t-Test p-values are indicated on the graphs.
178. IL-32 Drives the Differentiation of Cardiotropic CD4+ T Cells Carrying HIV DNA in People With HIV.
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Ramani, Hardik, Gosselin, Annie, Bunet, Rémi, Jenabian, Mohammad-Ali, Sylla, Mohamed, Pagliuzza, Amélie, Chartrand-Lefebvre, Carl, Routy, Jean-Pierre, Goulet, Jean-Philippe, Thomas, Réjean, Trottier, Benoit, Martel-Laferrière, Valérie, Fortin, Claude, Chomont, Nicolas, Fromentin, Rémi, Landay, Alan L, Durand, Madeleine, Ancuta, Petronela, El-Far, Mohamed, and Tremblay, Cecile
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T cells , *HIV-positive persons , *INTERLEUKIN-32 , *PROTEIN-tyrosine kinases , *IMMUNOLOGIC memory , *VIRAL tropism - Abstract
Interleukin 32 (IL-32) is a potent multi-isoform proinflammatory cytokine, which is upregulated in people with HIV (PWH) and is associated with cardiovascular disease (CVD) risk. However, the impact of IL-32 isoforms on CD4 T-cell cardiotropism, a mechanism potentially contributing to heart inflammation, remains unknown. Here we show that IL-32 isoforms β and γ induce the generation of CCR4+CXCR3+ double positive (DP) memory CD4 T-cell subpopulation expressing the tyrosine kinase receptor c-Met, a phenotype associated with heart-homing of T cells. Our ex vivo studies on PWH show that the frequency of DP CD4 T cells is significantly higher in individuals with, compared to individuals without, subclinical atherosclerosis and that DP cells from antiretroviral-naive and treated individuals are highly enriched with HIV DNA. Together, these data demonstrate that IL-32 isoforms have the potential to induce heart-homing of HIV-infected CD4 T cells, which may further aggravate heart inflammation and CVD in PWH. [ABSTRACT FROM AUTHOR]
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- 2024
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179. Phylogenetic analysis of HIV-1 archived DNA in blood and gut-associated lymphoid tissue in two patients under antiretroviral therapy.
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Recordon-Pinson, Patricia, Gosselin, Annie, Ancuta, Petronela, Routy, Jean-Pierre, and Fleury, Hervé
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MONONUCLEAR leukocytes , *HIV , *LYMPHOID tissue , *HISTOCOMPATIBILITY antigens , *ANTIRETROVIRAL agents , *RIBOSOMAL DNA , *DNA - Abstract
One of the approaches to cure human immunodeficiency virus (HIV) is the use of therapeutic vaccination. We have launched the Provir/Latitude 45 study to identify conserved CTL epitopes in archived HIV-1 DNA according to the HLA class I alleles in aviremic patients under antiretroviral therapy (ART). A HIV-1 polypeptidic therapeutic vaccine based on viral sequence data obtained from circulating blood was proposed; here, our aim was to compare the proviral DNA in blood and gut-associated lymphoid tissue (GALT). Peripheral blood mononuclear cells and gut biopsies were obtained from two HIV-1 infected patients under successful antiretroviral therapy. Total DNA was extracted including the proviral DNA. The HIV-1 reverse transcriptase was sequenced in both compartments using next generation sequencing followed by single genome sequencing; phylogenetic trees were established and compared. The proviral sequences of both compartments intra-patient exhibited a very low genetic divergence while it was possible to differentiate the sequences inter-patients; single genome sequencing analysis of two couples of samples confirmed that there was no compartmentalization of the sequences intra-patient. We conclude that, considering these two cases, the proviral DNA sequences in blood and GALT are similar and that the epitope analysis of HIV-1 provirus in blood should be considered as relevant to that observed in the GALT, a hard-to-reach major compartment, and can therefore be used for therapeutic vaccine approaches. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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180. Alterations in Th17 Cells and Non-Classical Monocytes as a Signature of Subclinical Coronary Artery Atherosclerosis during ART-Treated HIV-1 Infection.
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Wiche Salinas, Tomas Raul, Zhang, Yuwei, Gosselin, Annie, Rosario, Natalia Fonseca, El-Far, Mohamed, Filali-Mouhim, Ali, Routy, Jean-Pierre, Chartrand-Lefebvre, Carl, Landay, Alan L., Durand, Madeleine, Tremblay, Cécile L., and Ancuta, Petronela
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T helper cells , *CORONARY artery disease , *MONOCYTES , *CORONARY arteries , *DISEASE risk factors , *HIV - Abstract
Cardiovascular disease (CVD) remains an important comorbidity in people living with HIV-1 (PLWH) receiving antiretroviral therapy (ART). Our previous studies performed in the Canadian HIV/Aging Cohort Study (CHACS) (>40 years-old; Framingham Risk Score (FRS) > 5%) revealed a 2–3-fold increase in non-calcified coronary artery atherosclerosis (CAA) plaque burden, measured by computed tomography angiography scan (CTAScan) as the total (TPV) and low attenuated plaque volume (LAPV), in ART-treated PLWH (HIV+) versus uninfected controls (HIV−). In an effort to identify novel correlates of subclinical CAA, markers of intestinal damage (sCD14, LBP, FABP2); cell trafficking/inflammation (CCL20, CX3CL1, MIF, CCL25); subsets of Th17-polarized and regulatory (Tregs) CD4+ T-cells, classical/intermediate/non-classical monocytes, and myeloid/plasmacytoid dendritic cells were studied in relationship with HIV and TPV/LAPV status. The TPV detection/values coincided with higher plasma sCD14, FABP2, CCL20, MIF, CX3CL1, and triglyceride levels; lower Th17/Treg ratios; and classical monocyte expansion. Among HIV+, TPV+ versus TPV− exhibited lower Th17 frequencies, reduced Th17/Treg ratios, higher frequencies of non-classical CCR9lowHLADRhigh monocytes, and increased plasma fibrinogen levels. Finally, Th17/Treg ratios and non-classical CCR9lowHLADRhigh monocyte frequencies remained associated with TPV/LAPV after adjusting for FRS and HIV/ART duration in a logistic regression model. These findings point to Th17 paucity and non-classical monocyte abundance as novel immunological correlates of subclinical CAA that may fuel the CVD risk in ART-treated PLWH. [ABSTRACT FROM AUTHOR]
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- 2024
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181. DAA-mediated HCV cure reduces HIV DNA levels in HCV/HIV coinfected people.
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Gobran, Samaa T., Pagliuzza, Amélie, Khedr, Omar, Fert, Augustine, Chomont, Nicolas, Bruneau, Julie, Klein, Marina B., Ancuta, Petronela, and Shoukry, Naglaa H.
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HIV , *HEPATITIS C virus , *VIRAL load , *END of treatment , *RANDOM forest algorithms - Abstract
The human immunodeficiency virus (HIV) persists in HIV viral reservoirs despite antiretroviral therapy (ART). Hepatitis C virus (HCV) coinfection is associated with increased HIV reservoir size and residual HIV transcription during ART. Herein, we investigated the impact of direct acting antivirals (DAA)-mediated HCV cure on the size/transcriptional activity of the HIV reservoirs and investigated predictors of HIV reservoirs decline in HCV+/HIV+ coinfected individuals. HCV+/HIV+ (n = 20) and HCV+/HIV- (n = 14) participants were examined prior to DAA treatment (baseline), at the end of treatment (EOT), and at 12-24 weeks after EOT (follow-up). In HCV+/HIV+ individuals, DAA-mediated HCV cure significantly reduced integrated HIV DNA levels, mainly in participants infected with HCV prior to HIV. Integrated HIV DNA, unspliced (US), and multiply spliced (MS) HIV RNA levels were quantified in sorted CD4+ T-cells. Despite the transient elevation of US HIV RNA at EOT, changes in US and MS HIV RNA were not statistically significant. Plasma inflammation markers were measured and DAA also reduced plasma sCD163 and sCD14. Changes in immunological/virological parameters were analyzed using multivariate random forest analysis where pre-ART peak HIV viremia and HCV viral load predicted integrated HIV DNA and US RNA changes. In conclusion, we demonstrate the beneficial impact of DAA on HIV reservoirs and immune activation, with a fraction of HIV reservoirs being DAA-sensitive in people infected with HCV before HIV. Furthermore, we identify HIV/HCV viremia as the top predictors of DAA-mediated changes in the HIV reservoirs. These findings support the need for early ART and DAA treatment in HIV/HCV coinfections. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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182. Proinflammatory isoforms of IL-32 as novel and robust biomarkers for control failure in HIV-infected slow progressors.
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El-Far, Mohamed, Kouassi, Pascale, Sylla, Mohamed, Zhang, Yuwei, Fouda, Ahmed, Fabre, Thomas, Goulet, Jean-Philippe, van Grevenynghe, Julien, Lee, Terry, Singer, Joel, Harris, Marianne, Baril, Jean-Guy, Trottier, Benoit, Ancuta, Petronela, Routy, Jean-Pierre, Bernard, Nicole, and Tremblay, Cécile L.
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- 2016
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183. Loss of Viral Control in a Subset of HIV-Infected Long-term Non-progressors Is Associated with a Decline of an Array of Antiviral Responses.
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Kouassi, Pascale, Asin-Milan, Odalis, Chamberland, Annie, Sylla, Mohamed, Goulet, Jean-Philippe, Ancuta, Petronela, Routy, Jean-Pierre, Rouleau, Danielle, Harris, Marianne, Bernard, Nicole, and Tremblay, Cécile
- Abstract
An abstract of the article "Loss of Viral Control in a Subset of HIV-Infected Long-term Non-progressors Is Associated with a Decline of an Array of Antiviral Responses" by Mohamed El-Far, Pascale Kouassi, Odalis Asin-Milan, and colleagues is presented.
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- 2014
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184. Differential Impact of IL-32 Isoforms on the Functions of Coronary Artery Endothelial Cells: A Potential Link with Arterial Stiffness and Atherosclerosis.
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Bunet, Rémi, Roy-Cardinal, Marie-Hélène, Ramani, Hardik, Cleret-Buhot, Aurélie, Durand, Madeleine, Chartrand-Lefebvre, Carl, Routy, Jean-Pierre, Thomas, Réjean, Trottier, Benoît, Ancuta, Petronela, Hanna, David B., Landay, Alan L., Cloutier, Guy, Tremblay, Cécile L., and El-Far, Mohamed
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ARTERIAL diseases , *CORONARY arteries , *ENDOTHELIAL cells , *ENDOTHELIUM diseases , *INTERLEUKIN-32 , *ATHEROSCLEROSIS - Abstract
Chronic inflammation is associated with higher risk of cardiovascular disease (CVD) in people living with HIV (PLWH). We have previously shown that interleukin-32 (IL-32), a multi-isoform proinflammatory cytokine, is chronically upregulated in PLWH and is linked with CVD. However, the mechanistic roles of the different IL-32 isoforms in CVD are yet to be identified. In this study, we aimed to investigate the potential impact of IL-32 isoforms on coronary artery endothelial cells (CAEC), whose dysfunction represents a major factor for atherosclerosis. Our results demonstrated that the predominantly expressed IL-32 isoforms (IL-32β and IL-32γ) have a selective impact on the production of the proinflammatory cytokine IL-6 by CAEC. Furthermore, these two isoforms induced endothelial cell dysfunction by upregulating the expression of the adhesion molecules ICAM-I and VCAM-I and the chemoattractants CCL-2, CXCL-8 and CXCL-1. IL-32-mediated expression of these chemokines was sufficient to drive monocyte transmigration in vitro. Finally, we demonstrate that IL-32 expression in both PLWH and controls correlates with the carotid artery stiffness, measured by the cumulated lateral translation. These results suggest a role for IL-32-mediated endothelial cell dysfunction in dysregulation of the blood vessel wall and that IL-32 may represent a therapeutic target to prevent CVD in PLWH. [ABSTRACT FROM AUTHOR]
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- 2023
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185. Targeting Th17 cells in HIV-1 remission/cure interventions.
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Fert, Augustine, Raymond Marchand, Laurence, Wiche Salinas, Tomas Raul, and Ancuta, Petronela
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T helper cells , *HIV , *TYPE 1 diabetes , *T cells - Abstract
Since the discovery of HIV-1, progress has been made in deciphering the viral replication cycle and mechanisms of host–pathogen interactions that has facilitated the implementation of effective antiretroviral therapies (ARTs). Major barriers to HIV-1 remission/cure include the persistence of viral reservoirs (VRs) in long-lived CD4+ T cells, residual viral transcription, and lack of mucosal immunity restoration during ART, which together fuel systemic inflammation. Recently, T helper (Th)17-polarized cells were identified as major contributors to the pool of transcriptionally/translationally competent VRs. In this review, we discuss the functional features of Th17 cells that were elucidated by fundamental immunology studies in the context of autoimmunity. We also highlight recent discoveries supporting the possibility of extrapolating this knowledge toward the identification of new putative Th17-targeted HIV-1 remission/cure strategies. The human T helper (Th)17 cell master regulator RORC2 promotes HIV-1 transcription and outgrowth. STAT3 and LCK were identified as sites of HIV-1 integration in T cell lymphomas of patients living with HIV-1 (PLWH). STAT3 and LCK are expressed at relatively high amounts in Th17 cells. The nuclear receptor AHR identifies nonpathogenic Th17 cells in humans, positively regulates HIV-1 transcription in CD4+ T cells, but negatively regulates HIV-1 replication in macrophages. Human mechanistic target of rapamycin (mTOR) is a key metabolic sensor that can be targeted by the type 1 diabetes mellitus drug metformin to interfere with viral reservoirs in CD4+ T cells of antiretroviral therapy-treated PLWH. The mTOR pathway is highly activated in Th17 cells. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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186. Plasma sCD14 Is a Biomarker Associated With Impaired Neurocognitive Test Performance in Attention and Learning Domains in HIV Infection.
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Lyons, Jennifer L, Uno, Hajime, Ancuta, Petronela, Kamat, Anupa, Moore, David J, Singer, Elyse J, Morgello, Susan, and Gabuzda, Dana
- Abstract
Mild forms of HIV-associated neurocognitive disorders (HAND) remain prevalent in the era of combination antiretroviral therapy (cART). Although elevated lipopolysaccharide (LPS) and immune activation are implicated in HAND pathogenesis, relationships of LPS and inflammatory markers to mild forms of HAND or impairment in specific cognitive domains are unknown. To examine these relationships, we compared plasma soluble CD14 (sCD14), CCL2, and LPS levels with neurocognitive test scores in a cART era cohort.We analyzed plasma from HIV+ subjects (n = 97) with nadir CD4 counts <300 and high frequency of hepatitis C virus coinfection and illicit drug use for relationships between sCD14, CCL2, and LPS levels and neurocognitive test scores.Plasma sCD14 levels were higher in subjects with test scores indicating global impairment (P = 0.007), particularly in attention and learning domains (P = 0.015 and P = 0.03, respectively), regardless of HAND diagnosis. Plasma sCD14 levels correlated inversely with global, attention, and learning T scores (P = 0.036, 0.047, and 0.007, respectively) and yielded higher area under receiver operating characteristic values for predicting impaired scores than single-marker models based on plasma or cerebrospinal fluid viral load or CD4 count (area under receiver operating characteristic values = 0.71, 0.81, and 0.71, respectively) and in 4-marker models based on plasma sCD14 and 3 conventional markers compared with the 3-marker models.Plasma sCD14 is a biomarker associated with impaired neurocognitive testing in attention and learning domains in HIV-infected individuals with advanced disease, suggesting involvement of cortical and limbic pathways by inflammatory processes in the cART era. Plasma sCD14 is a potential biomarker to monitor HAND progression and therapeutic responses. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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187. HIV reservoir size and persistence are driven by T cell survival and homeostatic proliferation.
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Chomont, Nicolas, El-Far, Mohamed, Ancuta, Petronela, Trautmann, Lydie, Procopio, Francesco A., Yassine-Diab, Bader, Boucher, Geneviève, Boulassel, Mohamed-Rachid, Ghattas, Georges, Brenchley, Jason M., Schacker, Timothy W., Hill, Brenna J., Douek, Daniel C., Routy, Jean-Pierre, Haddad, Elias K., and Sékaly, Rafick-Pierre
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T cells , *HIV , *HIGHLY active antiretroviral therapy , *ANTIGENS , *DNA , *INTERLEUKINS , *CELL proliferation - Abstract
HIV persists in a reservoir of latently infected CD4+ T cells in individuals treated with highly active antiretroviral therapy (HAART). Here we identify central memory (TCM) and transitional memory (TTM) CD4+ T cells as the major cellular reservoirs for HIV and find that viral persistence is ensured by two different mechanisms. HIV primarily persists in TCM cells in subjects showing reconstitution of the CD4+ compartment upon HAART. This reservoir is maintained through T cell survival and low-level antigen-driven proliferation and is slowly depleted with time. In contrast, proviral DNA is preferentially detected in TTM cells from aviremic individuals with low CD4+ counts and higher amounts of interleukin-7–mediated homeostatic proliferation, a mechanism that ensures the persistence of these cells. Our results suggest that viral eradication might be achieved through the combined use of strategic interventions targeting viral replication and, as in cancer, drugs that interfere with the self renewal and persistence of proliferating memory T cells. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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188. Th17 cell master transcription factor RORC2 regulates HIV-1 gene expression and viral outgrowth.
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Wiche Salinas, Tomas Raul, Yuwei Zhang, Sarnello, Daniele, Zhyvoloup, Alexander, Marchand, Laurence Raymond, Fert, Augustine, Planas, Delphine, Lodha, Manivel, Chatterjee, Debashree, Karwacz, Katarzyna, Oxenford, Sally, Routy, Jean-Pierre, Irlbeck, David, Amrine-Madsen, Heather, Ancuta, Petronela, and Fassati, Ariberto
- Subjects
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T helper cells , *HIV , *NUCLEAR receptors (Biochemistry) , *TRANSCRIPTION factors , *GENE expression , *COMMERCIAL products , *CURCUMIN - Abstract
Among CD4+ T cells, T helper 17 (Th17) cells are particularly susceptible to HIV-1 infection and are depleted from mucosal sites, which causes damage to the gut barrier, resulting in a microbial translocation-induced systemic inflammation, a hallmark of disease progression. Furthermore, a proportion of latently infected Th17 cells persist long term in the gastrointestinal lymphatic tract where a low-level HIV-1 transcription is observed. This residual viremia contributes to chronic immune activation. Thus, Th17 cells are key players in HIV pathogenesis and viral persistence. It is, however, unclear why these cells are highly susceptible to HIV-1 infection. Th17 cell differentiation depends on the expression of the master transcriptional regulator RORC2, a retinoic acid-related nuclear hormone receptor that regulates specific transcriptional programs by binding to promoter/enhancer DNA. Here, we report that RORC2 is a key host cofactor for HIV replication in Th17 cells. We found that specific inhibitors that bind to the RORC2 ligand-binding domain reduced HIV replication in CD4+ T cells. The depletion of RORC2 inhibited HIV-1 infection, whereas its overexpression enhanced it. RORC2 was also found to promote HIV-1 gene expression by binding to the nuclear receptor responsive element in the HIV-1 long terminal repeats (LTR). In treated HIV-1 patients, RORC2+ CD4 T cells contained more proviral DNA than RORC2− cells. Pharmacological inhibition of RORC2 potently reduced HIV-1 outgrowth in CD4+ T cells from antiretroviral-treated patients. Altogether, these results provide an explanation as to why Th17 cells are highly susceptible to HIV-1 infection and suggest that RORC2 may be a cell-specific target for HIV-1 therapy. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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189. Subclinical Carotid Artery Atherosclerosis Is Associated With Increased Expression of Peripheral Blood IL-32 Isoforms Among Women Living With HIV.
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El-Far, Mohamed, Hanna, David B., Durand, Madeleine, Larouche-Anctil, Etienne, Sylla, Mohamed, Chartrand-Lefebvre, Carl, Cloutier, Guy, Goulet, Jean Philippe, Kassaye, Seble, Karim, Roksana, Kizer, Jorge R., French, Audrey L., Gange, Stephen J., Lazar, Jason M., Hodis, Howard N., Routy, Jean-Pierre, Ancuta, Petronela, Chomont, Nicolas, Landay, Alan L., and Kaplan, Robert C.
- Abstract
Background: Persistent inflammation in HIV infection is associated with elevated cardiovascular disease (CVD) risk, even with viral suppression. Identification of novel surrogate biomarkers can enhance CVD risk stratification and suggest novel therapies. We investigated the potential of interleukin 32 (IL-32), a proinflammatory multi-isoform cytokine, as a biomarker for subclinical carotid artery atherosclerosis in virologically suppressed women living with HIV (WLWH). Methods and Results: Nested within the Women's Interagency HIV Study, we conducted a cross-sectional comparison of IL-32 between 399 WLWH and 100 women without HIV, followed by a case-control study of 72 WLWH (36 carotid artery plaque cases vs. 36 age-matched controls without plaque). Plasma IL-32 protein was measured by ELISA, and mRNA of IL-32 isoforms (IL-32α, β, γ, D, ε, and θ) was quantified by reverse transcription polymerase chain reaction from peripheral blood mononuclear cells. Plasma IL-32 protein levels were higher in WLWH compared with women without HIV (P = 0.02). Among WLWH, although plasma IL-32 levels did not differ significantly between plaque cases and controls, expression of IL-32 isoforms α, β, and ε mRNA was significantly higher in peripheral blood mononuclear cells from cases (P = 0.01, P = 0.005, and P = 0.018, respectively). Upregulation of IL-32β and IL-32ε among WLWH with carotid artery plaque persisted after adjustment for age, race/ethnicity, smoking, systolic blood pressure, body mass index, and history of hepatitis C virus (P = 0.04 and P = 0.045); the adjusted association for IL-32α was marginally significant (P = 0.07). Conclusions: IL-32 isoforms should be studied further as potential CVD biomarkers. This is of particular interest in WLWH by virtue of altered IL-32 levels in this population. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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190. Antiretroviral Drug Transporters and Metabolic Enzymes in Circulating Monocytes and Monocyte-Derived Macrophages of ART-Treated People Living With HIV and HIV-Uninfected Individuals.
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Hoque, Tozammel M. D., Cattin, Amélie, Whyte-Allman, Sana-Kay, Winchester, Lee, Fletcher, Courtney V., Routy, Jean-Pierre, Ancuta, Petronela, and Bendayan, Reina
- Abstract
Membrane-associated drug transport proteins and drug metabolic enzymes could regulate intracellular antiretroviral (ARV) drug concentrations in HIV-1 target cells such as myeloid cells. We investigated the expression of these transporters and enzymes in monocyte subsets and monocyte-derived macrophages (MDMs) isolated from peripheral blood mononuclear cells (PBMCs) of HIV-uninfected individuals (HIV-negative) and people living with HIV receiving viral suppressive antiretroviral therapy (ART; HIV+ ART) and examined plasma and intracellular ARV concentrations. Monocytes were isolated from PBMCs of 12 HIV-negative and 12 HIV+ART donors and differentiated into MDMs. The mRNA and protein expression of drug transporters and metabolic enzymes were analyzed by quantitative real-time polymerase chain reaction and flow cytometry, respectively. ARV drug concentrations were quantified in plasma, PBMCs, monocytes, and MDMs by LCMS/MS. The mRNA expression of relevant ARV transporters or metabolic enzymes, ABCB1/P-gp, ABCG2/BCRP, ABCC1/MRP1, ABCC4/MRP4, SLC22A1/OCT1, SLC29A2/ENT2, CYP2B6, CYP2D6, and UGT1A1, was demonstrated in monocytes and MDMs of 2 to 4 HIV-negative donors. P-gp, BCRP, and MRP1 proteins were differentially expressed in classical, intermediate, and nonclassical monocytes and MDMs of both HIV+ART and HIVnegative donors. Intracellular concentrations of ARVs known to be substrates of these transporters and metabolic enzymes were detected in monocytes of HIV+ART donors but were undetectable in MDMs. In this study, we demonstrated the expression of drug transporters and metabolic enzymes in monocytes and MDMs of HIV-negative and HIV+ART individuals, which could potentially limit intracellular concentrations of ARVs and contribute to residual HIV replication. Further work is needed to assess the role of these transporters in the penetration of ARVs in tissue macrophages. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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191. RALDH Activity Induced by Bacterial/Fungal Pathogens in CD16+ Monocyte-Derived Dendritic Cells Boosts HIV Infection and Outgrowth in CD4+ T Cells.
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Cattin, Amélie, Wacleche, Vanessa Sue, Fonseca Do Rosario, Natalia, Marchand, Laurence Raymond, Dias, Jonathan, Gosselin, Annie, Cohen, Eric A., Estaquier, Jérôme, Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
- Subjects
- *
HIV infections , *T cells , *DENDRITIC cells , *HIV-positive persons , *RETROVIRUSES , *STAPHYLOCOCCAL diseases - Abstract
HIV reservoirs persist in gut-homing CD4+ T cells of people living with HIV and receiving antiretroviral therapy, but the antigenic specificity of such reservoirs remains poorly documented. The imprinting for gut homing is mediated by retinoic acid (RA), a vitamin A-derived metabolite produced by dendritic cells (DCs) exhibiting RA-synthesizing (RALDH) activity. RALDH activity in DCs can be induced by TLR2 ligands, such as bacterial peptidoglycans and fungal zymosan. Thus, we hypothesized that bacterial/fungal pathogens triggering RALDH activity in DCs fuel HIV reservoir establishment/outgrowth in pathogenreactive CD4+ T cells. Our results demonstrate that DCs derived from intermediate/nonclassical CD16+ compared with classical CD162 monocytes exhibited superior RALDH activity and higher capacity to transmit HIV infection to autologous Staphylococcus aureus-reactive T cells. Exposure of total monocyte-derived DCs (MDDCs) to S. aureus lysates as well as TLR2 (zymosan and heat-killed preparation of Listeria monocytogenes) and TLR4 (LPS) agonists but not CMV lysates resulted in a robust upregulation of RALDH activity. MDDCs loaded with S. aureus or zymosan induced the proliferation of T cells with a CCR5+integrin b7+CCR6+ phenotype and efficiently transmitted HIV infection to these T cells via RALDH/RA-dependent mechanisms. Finally, S. aureus- and zymosan-reactive CD4+ T cells of antiretroviral therapy-treated people living with HIV carried replication-competent integrated HIV-DNA, as demonstrated by an MDDC-based viral outgrowth assay. Together, these results support a model in which bacterial/fungal pathogens in the gut promote RALDH activity in MDDCs, especially in CD16+ MDDCs, and subsequently imprint CD4+ T cells with gut-homing potential and HIV permissiveness. Thus, nonviral pathogens play key roles in fueling HIV reservoir establishment/outgrowth via RALDH/RA-dependent mechanisms that may be therapeutically targeted. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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192. Peculiar Phenotypic and Cytotoxic Features of Pulmonary Mucosal CD8 T Cells in People Living with HIV Receiving Long-Term Antiretroviral Therapy.
- Author
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Meziane, Oussama, Alexandrova, Yulia, Olivenstein, Ronald, Dupuy, Franck P., Salahuddin, Syim, Thomson, Elaine, Orlova, Marianna, Schurr, Erwin, Ancuta, Petronela, Durand, Madeleine, Chomont, Nicolas, Estaquier, Jérôme, Bernard, Nicole F., Costiniuk, Cecilia T., and Jenabian, Mohammad-Ali
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T cells , *HIV-positive persons , *CD8 antigen , *PERFORINS , *GLYCOSAMINOGLYCANS , *ANTIRETROVIRAL agents , *SMOKING - Abstract
People living with HIV have high burdens of chronic lung disease, lung cancers, and pulmonary infections despite antiretroviral therapy (ART). The rates of tobacco smoking by people living with HIV vastly exceed that of the general population. Furthermore, we showed that HIV can persist within the lung mucosa despite long-term ART. As CD8 T cell cytotoxicity is pivotal for controlling viral infections and eliminating defective cells, we explored the phenotypic and functional features of pulmonary versus peripheral blood CD8 T cells in ART-treated HIV+ and uninfected controls. Bronchoalveolar lavage fluid and matched blood were obtained from asymptomatic ART-treated HIV+ smokers (n = 11) and nonsmokers (n = 15) and uninfected smokers (n = 7) and nonsmokers (n = 10). CD8 T cell subsets and phenotypes were assessed by flow cytometry. Perforin/granzyme B content, degranulation (CD107a expression), and cytotoxicity against autologous Gag peptide-pulsed CD4 T cells (Annexin V+) following in vitro stimulation were assessed. In all groups, pulmonary CD8 T cells were enriched in effector memory subsets compared with blood and displayed higher levels of activation (HLA-DR+) and exhaustion (PD1+) markers. Significant reductions in proportions of senescent pulmonary CD282CD57+ CD8 T cells were observed only in HIV+ smokers. Pulmonary CD8 T cells showed lower perforin expression ex vivo compared with blood CD8 T cells, with reduced granzyme B expression only in HIV+ nonsmokers. Bronchoalveolar lavage CD8 T cells showed significantly less in vitro degranulation and CD4 killing capacity than blood CD8 T cells. Therefore, pulmonary mucosal CD8 T cells are more differentiated, activated, and exhausted, with reduced killing capacity in vitro than blood CD8 T cells, potentially contributing to a suboptimal anti-HIV immune response within the lungs. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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193. HIV Infection and Persistence in Pulmonary Mucosal Double Negative T Cells In Vivo.
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Mezian, Oussama, Salahuddin, Syim, Pham, Tram N. Q., Farnos, Omar, Pagliuzza, Amélie, Olivenstein, Ron, Thomson, Elaine, Alexandrova, Yulia, Orlova, Marianna, Schurr, Erwin, Ancuta, Petronela, Haddad, Élie, Chomont, Nicolas, Cohen, Eric A., Jenabian, Mohammad-Ali, and Costiniuk, Cecilia T.
- Subjects
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HIV infections , *HIV , *LUNG infections , *T cells , *PROGRAMMED cell death 1 receptors - Abstract
The lungs are relatively unexplored anatomical human immunodeficiency virus (HIV) reservoirs in the antiretroviral therapy (ART) era. Double negative (DN) T cells are a subset of T cells that lack expression of CD4 and CD8 (CD4 CD8) and may have both regulatory and effector functions during HIV infection. Notably, circulating DN T cells were previously described as cellular HIV reservoirs. Here, we undertook a thorough analysis of pulmonary versus blood DN T cells of people living with HIV (PLWH) under ART. Bronchoalveolar lavage (BAL) fluid and matched peripheral blood were collected from 35 PLWH on ART and 16 uninfected volunteers without respiratory symptoms. Both PLWH and HIV-negative (HIV) adults displayed higher frequencies of DN T cells in BAL versus blood, and these cells mostly exhibited an effector memory phenotype. In PLWH, pulmonary mucosal DN T cells expressed higher levels of HLA-DR and several cellular markers associated with HIV persistence (CCR6, CXCR3, and PD-1) than blood. We also observed that DN T cells were less senescent (CD28 CD57) and expressed less immunosuppressive ectonucleotidase (CD73/CD39), granzyme B, and perforin in the BAL fluid than in the blood of PLWH. Importantly, fluorescence-activated cell sorter (FACS)-sorted DN T cells from the BAL fluid of PLWH under suppressive ART harbored HIV DNA. Using the humanized bone marrow-liver-thymus (hu-BLT) mouse model of HIV infection, we observed higher infection frequencies of lung DN T cells than those of the blood and spleen in both early and late HIV infection. Overall, our findings show that HIV is seeded in pulmonary mucosal DN T cells early following infection and persists in these potential cellular HIV reservoirs even during long-term ART. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
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194. Early Antiretroviral Therapy Prevents Viral Infection of Monocytes and Inflammation in Simian Immunodeficiency Virus-Infected Rhesus Macaques.
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Rabezanahary, Henintsoa, Clain, Julien, Racine, Gina, Andreani, Guadalupe, Benmadid-Laktout, Ghita, Borde, Chloé, Mammano, Fabrizio, Mesplèdes, Thibault, Ancuta, Petronela, Zghidi-Abouzid, Ouafa, and Estaquier, Jérôme
- Subjects
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MONOCYTES , *RHESUS monkeys , *ANTIRETROVIRAL agents , *HIV , *VIRUS diseases , *SIMIAN immunodeficiency virus , *MACAQUES - Abstract
Despite early antiretroviral therapy (ART), treatment interruption is associated with viral rebound, indicating early viral reservoir (VR) seeding and absence of full eradication of human immunodeficiency virus type 1 (HIV-1) that may persist in tissues. Herein, we address the contributing role of monocytes in maintaining VRs under ART, since these cells may represent a source of viral dissemination due to their ability to replenish mucosal tissues in response to injury. To this aim, monocytes with classical (CD14+), intermediate (CD14+ CD16+), and nonclassical (CD16+) phenotypes and CD4+ T cells were sorted from the blood, spleen, and intestines of untreated and early-ART-treated simian immunodeficiency virus (SIV)-infected rhesus macaques (RMs) before and after ART interruption. Cell-associated SIV DNA and RNA were quantified. We demonstrated that in the absence of ART, monocytes were productively infected with replication-competent SIV, especially in the spleen. Reciprocally, early ART efficiently (i) prevented the establishment of monocyte VRs in the blood, spleen, and intestines and (ii) reduced systemic inflammation, as indicated by changes in interleukin-18 (IL-18) and IL-1 receptor antagonist (IL-1Ra) plasma levels. ART interruption was associated with a rebound in viremia that led to the rapid productive infection of both CD4+ T cells and monocytes. Altogether, our results reveal the benefits of early ART initiation in limiting the contribution of monocytes to VRs and SIV-associated inflammation. [ABSTRACT FROM AUTHOR]
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- 2020
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195. Repurposing Metformin in Nondiabetic People With HIV: Influence on Weight and Gut Microbiota.
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Isnard, Stéphane, Lin, John, Fombuena, Brandon, Ouyang, Jing, Varin, Thibault V, Richard, Corentin, Marette, André, Ramendra, Rayoun, Planas, Delphine, Marchand, Laurence Raymond, Messaoudene, Meriem, Ley, Claude P Van der, Kema, Ido P, Ahmed, Darakhshan Sohail, Zhang, Yonglong, Finkelman, Malcolm, Routy, Bertrand, Angel, Jonathan, Ancuta, Petronela, and Routy, Jean-Pierre
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GUT microbiome , *METFORMIN , *POLYCYSTIC ovary syndrome , *DYSLIPIDEMIA , *HIV , *CLINICAL trials - Abstract
Background People with HIV (PWH) taking antiretroviral therapy (ART) may experience weight gain, dyslipidemia, increased risk of non-AIDS comorbidities, and long-term alteration of the gut microbiota. Both low CD4/CD8 ratio and chronic inflammation have been associated with changes in the gut microbiota of PWH. The antidiabetic drug metformin has been shown to improve gut microbiota composition while decreasing weight and inflammation in diabetes and polycystic ovary syndrome. Nevertheless, it remains unknown whether metformin may benefit PWH receiving ART, especially those with a low CD4/CD8 ratio. Methods In the Lilac pilot trial, we recruited 23 nondiabetic PWH receiving ART for more than 2 years with a low CD4/CD8 ratio (<0.7). Blood and stool samples were collected during study visits at baseline, after a 12-week metformin treatment, and 12 weeks after discontinuation. Microbiota composition was analyzed by 16S rDNA gene sequencing, and markers of inflammation were assessed in plasma. Results Metformin decreased weight in PWH, and weight loss was inversely correlated with plasma levels of the satiety factor GDF-15. Furthermore, metformin changed the gut microbiota composition by increasing the abundance of anti-inflammatory bacteria such as butyrate-producing species and the protective Akkermansia muciniphila. Conclusions Our study provides the first evidence that a 12-week metformin treatment decreased weight and favored anti-inflammatory bacteria abundance in the microbiota of nondiabetic ART-treated PWH. Larger randomized placebo-controlled clinical trials with longer metformin treatment will be needed to further investigate the role of metformin in reducing inflammation and the risk of non-AIDS comorbidities in ART-treated PWH. [ABSTRACT FROM AUTHOR]
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- 2020
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196. Daily variations of gut microbial translocation markers in ART-treated HIV-infected people.
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Ouyang, Jing, Isnard, Stéphane, Lin, John, Fombuena, Brandon, Chatterjee, Debashree, Wiche Salinas, Tomas Raul, Planas, Delphine, Cattin, Amélie, Fert, Augustine, Moreira Gabriel, Etiene, Raymond Marchand, Laurence, Zhang, Yonglong, Finkelman, Malcolm, Chen, Yaokai, Kaufmann, Daniel E., Cermakian, Nicolas, Ancuta, Petronela, and Routy, Jean-Pierre
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ANTIVIRAL agents , *BACTERIAL physiology , *BIOMARKERS , *BLOOD collection , *ENZYME-linked immunosorbent assay , *FATTY acid-binding proteins , *HIV infections , *HIV-positive persons , *PERMEABILITY , *PILOT projects , *LIPOPOLYSACCHARIDES - Abstract
Background: Increased intestinal barrier permeability and subsequent gut microbial translocation are significant contributors to inflammatory non-AIDS comorbidities in people living with HIV (PLWH). Evidence in animal models have shown that markers of intestinal permeability and microbial translocation vary over the course of the day and are affected by food intake and circadian rhythms. However, daily variations of these markers are not characterized yet in PLWH. Herein, we assessed the variation of these markers over 24 h in PLWH receiving antiretroviral therapy (ART) in a well-controlled environment. Methods: As in Canada, PLWH are predominantly men and the majority of them are now over 50 years old, we selected 11 men over 50 receiving ART with undetectable viremia for more than 3 years in this pilot study. Blood samples were collected every 4 h over 24 h before snacks/meals from 8:00 in the morning to 8:00 the next day. All participants consumed similar meals at set times, and had a comparable amount of sleep, physical exercise and light exposure. Plasma levels of bacterial lipopolysaccharide (LPS) and fungal (1→3)-β-D-Glucan (BDG) translocation markers, along with markers of intestinal damage fatty acid binding protein (I-FABP) and regenerating islet-derived protein-3α (REG3α) were assessed by ELISA or the fungitell assay. Results: Participants had a median age of 57 years old (range 50 to 63). Plasma levels of BDG and REG3α did not vary significantly over the course of the study. In contrast, a significant increase of LPS was detected between 12:00 and 16:00 (Z-score: − 1.15 ± 0.18 vs 0.16 ± 0.15, p = 0.02), and between 12:00 and 24:00 (− 1.15 ± 0.18 vs 0.89 ± 0.26, p < 0.001). The plasma levels of I-FABP at 16:00 (− 0.92 ± 0.09) were also significantly lower, compared to 8:00 the first day (0.48 ± 0.26, p = 0.002), 4:00 (0.73 ± 0.27, p < 0.001) or 8:00 on secondary day (0.88 ± 0.27, p < 0.001). Conclusions: Conversely to the fungal translocation marker BDG and the gut damage marker REG3α, time of blood collection matters for the proper evaluation for LPS and I-FABP as markers for the risk of inflammatory non-AIDS co-morbidities. These insights are instrumental for orienting clinical investigations in PLWH. [ABSTRACT FROM AUTHOR]
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- 2020
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197. Upregulation of IL-32 Isoforms in Virologically Suppressed HIV-Infected Individuals: Potential Role in Persistent Inflammation and Transcription From Stable HIV-1 Reservoirs.
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Zaidan, Sarah M., Leyre, Louise, Bunet, Rémi, Larouche-Anctil, Etienne, Turcotte, Isabelle, Sylla, Mohamed, Chamberland, Annie, Chartrand-Lefebvre, Carl, Ancuta, Petronela, Routy, Jean-Pierre, Baril, Jean-Guy, Trottier, Benoit, MacPherson, Paul, Trottier, Sylvie, Harris, Marianne, Walmsley, Sharon, Conway, Brian, Wong, Alexander, Thomas, Réjean, and Kaplan, Robert C.
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Background: Human IL-32 is a polyfunctional cytokine that was initially reported to inhibit HIV-1 infection. However, recent data suggest that IL-32 may enhance HIV-1 replication by activating the HIV-1 primary targets, CD4+ T-cells. Indeed, IL-32 is expressed in multiple isoforms, some of which are proinflammatory, whereas others are anti-inflammatory. Setting and Methods: Here, we aimed to determine the relative expression of IL-32 isoforms and to test their inflammatory nature and potential to induce HIV-1 production in latently infected cells from virologically suppressed HIV-infected individuals. IL-32 and other cytokines were quantified from plasma and supernatant of CD4+ T-cells by ELISA. Transcripts of IL-32 isoforms were quantified by qRT-PCR in peripheral blood mononuclear cells. The impact of recombinant human IL-32 isoforms on HIV-1 transcription was assessed in CD4+ T-cells from HIV-1+cART+ individuals by qRT-PCR. Results: All IL-32 isoforms were significantly upregulated in HIV- 1+cART+ compared to HIVneg individuals with IL-32β representing the dominantly expressed isoform, mainly in T-cells and NK-cells. At the functional level, although IL-32γ induced typical proinflammatory cytokines (IL-6 and IFN-γ) in TCR-activated CD4+ T-cells, IL-32α showed an anti-inflammatory profile by inducing IL-10 but not IL-6 or IFN-γ. However, IL-32β showed a dual phenotype by inducing both pro- and anti-inflammatory cytokines. Interestingly, consistent with its highly pro-inflammatory nature, IL-32γ, but not IL-32α or IL-32β, induced HIV-1 production in latently infected CD4U T-cells isolated from combined antiretroviral therapy--treated individuals. Conclusions: Our data report on the differential expression of IL-32 isoforms and highlight the potential role of IL-32, particularly the γ isoform, in fueling persistent inflammation and transcription of viral reservoir in HIV-1 infection. [ABSTRACT FROM AUTHOR]
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- 2019
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198. Targeting the interleukin‐17 pathway to prevent acute respiratory distress syndrome associated with SARS‐CoV‐2 infection.
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Wiche Salinas, Tomas Raul, Zheng, Boyang, Routy, Jean‐Pierre, and Ancuta, Petronela
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ADULT respiratory distress syndrome , *COVID-19 , *MERS coronavirus , *INFECTION , *BRONCHIOLITIS , *INTERLEUKIN-17 - Abstract
Targeting the interleukin-17 pathway to prevent acute respiratory distress syndrome associated with SARS-CoV-2 infection Keywords: acute respiratory distress syndrome; COVID-19; cytokine EN acute respiratory distress syndrome COVID-19 cytokine 797 799 3 07/17/20 20200801 NES 200801 The novel coronavirus causing severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is responsible for coronavirus disease 2019 (COVID-19) pandemic. Risk factors associated with acute respiratory distress syndrome and death in patients with coronavirus disease 2019 pneumonia in Wuhan, China. Cell host response to infection with novel human coronavirus EMC predicts potential antivirals and important differences with SARS coronavirus. [Extracted from the article]
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- 2020
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199. New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy.
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Wacleche, Vanessa Sue, Goulet, Jean-Philippe, Gosselin, Annie, Monteiro, Patricia, Soudeyns, Hugo, Fromentin, Rémi, Jenabian, Mohammad-Ali, Vartanian, Shant, Deeks, Steven G., Chomont, Nicolas, Routy, Jean-Pierre, and Ancuta, Petronela
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HIV , *HETEROGENEITY , *T helper cells , *HIGHLY active antiretroviral therapy , *LYMPH nodes - Abstract
Background: Th17 cells are permissive to HIV-1 infection and their depletion from the gut of infected individuals leads to microbial translocation, a major cause for non-AIDS co-morbidities. Most recent evidence supports the contribution of long-lived Th17 cells to HIV persistence during antiretroviral therapy (ART). However, the identity of long-lived Th17 cells remains unknown. Results: Here, we performed an in-depth transcriptional and functional characterization of four distinct Th17 subsets and investigated their contribution to HIV reservoir persistence during ART. In addition to the previously characterized CCR6+CCR4+ (Th17) and CCR6+CXCR3+ (Th1Th17) subsets, we reveal the existence of two novel CCR6+ subsets, lacking (double negative, CCR6+DN) or co-expressing CXCR3 and CCR4 (double positive, CCR6+DP). The four subsets shared multiple Th17-polarization markers, a fraction of cells proliferated in response to C. albicans, and exhibited lineage commitment and plasticity when cultured under Th17 and Th1 conditions, respectively. Of note, fractions of CCR6+DN and Th17 demonstrated stable Th17-lineage commitment under Th1-polarization conditions. Among the four subsets, CCR6+DN expressed a unique transcriptional signature indicative of early Th17 development (IL-17F, STAT3), lymph-node homing (CCR7, CD62L), follicular help (CXCR5, BCL6, ASCL2), and self-renewal (LEFI, MYC, TERC). Cross sectional and longitudinal studies demonstrated that CCR6+DN cells were the most predominant CCR6+ subset in the blood before and after ART initiation; high frequencies of these cells were similarly observed in inguinal lymph nodes of individuals receiving long-term ART. Importantly, replication competent HIV was isolated from CCR6+DN of ART-treated individuals. Conclusions: Together, these results provide new insights into the functional heterogeneity of Th17-polarized CCR6+CD4+ T-cells and support the major contribution of CCR6+DN cells to HIV persistence during ART. [ABSTRACT FROM AUTHOR]
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- 2016
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200. Contribution directe et indirecte des cellules myéloïdes à la persistance des réservoirs du VIH-1 sous thérapie antirétrovirale
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Cattin, Amélie and Ancuta, Petronela
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Acide rétinoïque ,CD16+ ,Macrophage ,Réservoir ,Trans-infection ,Retinoic acid ,VIH ,RALDH ,HIV ,Cellule dendritique ,Monocyte ,Dendritic cell ,Reservoir - Abstract
Depuis sa découverte en 1983, la recherche sur le virus de l’immunodéficience humaine de type 1 (VIH-1) a connu un essor exemplaire, permettant la mise en place de tests de dépistage sensibles et de traitements antirétroviraux (TARs) efficaces. Malgré ces traitements qui contrôlent la réplication virale à des niveaux plasmatiques indétectables, l’éradication du VIH n’est pas atteinte. L’ADN intégré du VIH persiste dans des sous-populations cellulaires et la réplication virale reprend après l’arrêt du traitement. Alors que la persistance des réservoirs du VIH dans les lymphocytes T CD4+ est bien documentée, la contribution des cellules myéloïdes n’est pas bien définie. De plus, les TAR ne bloquent pas la transcription du VIH, permettant ainsi une réplication virale résiduelle dans certains tissus tels que la muqueuse intestinale. Cette réplication résiduelle est une source d‘activation immunitaire chronique et une barrière contre la guérison. La survie des lymphocytes T CD4+ mémoires portant les réservoirs du VIH est dépendante, en partie, de l’interaction avec les cellules dendritiques (DCs), dans le cadre du processus de présentation antigénique. L’identification des signaux fournis par les DCs et menant à la réactivation transcriptionnelle des réservoirs du VIH reste un axe de recherche prioritaire afin d’identifier de nouvelles stratégies thérapeutiques. Mes études doctorales ont eu pour but de comprendre la contribution directe et indirecte des cellules myéloïdes à la persistance du VIH-1 sous TAR. Dans la première partie de mon doctorat, je me suis intéressée à la contribution directe de différentes sous-population myéloïdes à la persistance des réservoirs du VIH sous TAR dans le sang et le colon des personnes vivant avec le VIH (PLWH). Nous avons démontré que la présence des réservoirs du VIH dans ces cellules myéloïdes était un évènement rare. En parallèle, j’ai réalisé des travaux dans un modèle de souris humanisées pour explorer l’existence et la contribution des cellules myéloïdes d’origine embryonnaire de longue durée de vie et capables d’autorenouvèlement à la persistance des réservoirs viraux sous TAR. Nous avons démontré que, contrairement aux lymphocytes T CD4+, les cellules myéloïdes résidant dans le foie et les poumons portent de l’ADN viral intégré avant, mais pas après la TAR, ce qui est un indicateur de leur faible contribution à la persistance du VIH sous TAR. Dans la deuxième partie de mon doctorat, je me suis intéressée à la contribution indirecte des cellules myéloïdes, et en particulier celle des DCs dérivées des monocytes (MDDCs) classiques CD16- versus intermédiaires/non-classiques CD16+. Nous avons démontré que les MDDCs CD16+ se distinguent des MDDC CD16- par l’activité élevée de leur enzyme RALDH métabolisant la vitamine A en acide rétinoïque et leur capacité supérieure à transmettre le VIH aux lymphocytes T CD4+ spécifiques/réactives au Staphylococcus aureus (S. aureus). De plus, nous avons démontré que les MDDC RALDH+ contribuent à l'établissement et à la réactivation des réservoirs du VIH dans les cellules T spécifiques à certains pathogènes non-VIH, tels que S. aureus, via un mécanisme dépendant de la production de l’acide rétinoïque par les MDDC en réponse à des ligands du recepteur de type Toll (TLR) 2. Ensemble, mes études doctorales démontrent que, bien que les cellules myéloïdes contribuent rarement de façon directe à la persistance des réservoirs du VIH, leur rôle indirect est important dans ce processus via l’interaction avec les lymphocytes T CD4+. De plus, les résultats que j’ai générés élargissent les connaissances sur la spécificité antigénique des lymphocytes T CD4+ mémoires portant les réservoirs du VIH et identifient l’enzyme RALDH comme une potentielle cible thérapeutique pour limiter la dissémination du virus et la persistance des réservoirs au niveau des muqueuses. Dans la première partie de mon doctorat, je me suis intéressée à la contribution directe de différentes sous-population myéloïdes à la persistance des réservoirs du VIH sous TAR dans le sang et le colon des personnes vivant avec le VIH (PLWH). Nous avons démontré que la présence des réservoirs du VIH dans ces cellules myéloïdes était un évènement rare. En parallèle, j’ai réalisé des travaux dans un modèle de souris humanisées pour explorer l’existence et la contribution des cellules myéloïdes d’origine embryonnaire de longue durée de vie et capables d’autorenouvèlement à la persistance des réservoirs viraux sous TAR. Nous avons démontré que, contrairement aux lymphocytes T CD4+, les cellules myéloïdes résidant dans le foie et les poumons portent de l’ADN viral intégré avant, mais pas après la TAR, ce qui est un indicateur de leur faible contribution à la persistence du VIH sous TAR. Dans la deuxième partie de mon doctorat, je me suis intéressée à la contribution indirecte des cellules myéloïdes, et en particulier celle des DCs dérivées des monocytes (MDDCs) classiques CD16- versus intermédiaires/non-classiques CD16+. Nous avons démontré que les MDDCs CD16+ se distinguent des MDDC CD16- par l’activité élevée de leur enzyme RALDH métabolisant la vitamine A en acide rétinoïque et leur capacité supérieure à transmettre le VIH aux lymphocytes T CD4+ spécifiques/réactives au Staphylococcus aureus (S. aureus). De plus, nous avons démontré que les MDDC RALDH+ contribuent à l'établissement et à la réactivation des réservoirs du VIH dans les cellules T spécifiques à certains pathogènes non-VIH, tels que S. aureus, via un mécanisme dépendant de la production de l’acide rétinoïque par les MDDC en réponse à des ligands du recepteur de type Toll (TLR) 2. Ensemble, mes études doctorales démontrent que, bien que les cellules myéloïdes contribuent rarement de façon directe à la persistance des réservoirs du VIH, leur rôle indirect est important dans ce processus via l’interaction avec les lymphocytes T CD4+. De plus, les résultats que j’ai générés élargissent les connaissances sur la spécificité antigénique des lymphocytes T CD4+ mémoires portant les réservoirs du VIH et identifient l’enzyme RALDH comme une potentielle cible thérapeutique pour limiter la dissémination du virus et la persistance des réservoirs au niveau des muqueuses., Since the discovery of the human immunodeficiency virus type 1 (HIV-1) in 1983, significant breakthroughs have led to efficient and sensitive viral tests, as well as potent antiviral therapies (ART). However, although ART controls viral replication to undetectable plasma levels, viral eradication is yet not achieved. Integrated HIV-DNA persists in different cell subsets, and viral replication resumes after treatment interruption. While HIV persistence is well characterized in CD4+ T-cells, the contribution of myeloid cells remains elusive. Notably, ART does not inhibit HIV transcription, thus allowing for residual viral replication in tissues such as the gut. This low level of viral replication contributes to chronic immune activation and represents a major challenge in developing a cure. Memory CD4+ T-cells bearing HIV reservoirs interact with dendritic cells (DCs) in an antigen specific manner, resulting in T-cell clonal expansion. Hence, we need to identify cellular signals provided by DCs that lead to transcriptional reactivation of HIV reservoirs. During my Ph.D., I studied the direct and indirect mechanisms by which myeloid cells contribute to HIV persistence during ART. In the first part of my thesis, I studied the direct contribution of myeloid subsets to the persistence of the HIV reservoir during ART. We demonstrated that HIV persistence in myeloid cells is a rare event in the blood and colon of ART-treated people living with HIV (PLWH). In parallel, we used humanized mice (hu-BLT) to explore the contribution of long-lived tissue-resident macrophages (LL-TRM), with embryonic origin and self-renewal capacity to the HIV reservoir during ART. We demonstrated that myeloid cells in this hu-BLT mouse model, are permissive to HIV infection, but are not HIV reservoirs during ART. These results point to the need for establishing new models allowing LL-TRM development for HIV reservoir studies. In the second part of my thesis, I studied the indirect contribution of DCs derived from classical (CD16-) or intermediate/non-classical (CD16+) monocyte origin. We identified that, in contrast to CD16- monocyte-derived DCs (MDDCs), CD16+ MDDCs exhibit a superior activity of the RALDH enzyme, involved in retinoic acid metabolism, and a higher capacity to transmit HIV to CD4+ T-cells specific/reactivated to Staphylococcus aureus (S. aureus). Furthermore, we demonstrated that RALDH+ MDDCs contribute to HIV reservoir establishment and reactivation in T-cells with specificity to non-HIV pathogens (e.g. S. aureus) through a retinoic acid-dependent mechanism in response to Toll like receptor (TLR) 2 stimulation. Together, these results underline the key role of CD16+ MDDCs and bacterial/fungal pathogens in fueling HIV reservoir establishment/outgrowth via a RALDH/RA-dependent mechanism that may be therapeutically targeted. In conclusion, my doctoral work demonstrated that, despite the rare direct contribution of myeloid cells to the HIV reservoir, these cells play an important indirect role through their ability to interact with CD4+ T-cells and to modulate their functions. These results extend the knowledge on the antigenic specificity of memory CD4+ T-cells harboring HIV reservoirs and they identify the RALDH/retinoic acid pathway as a potential therapeutic target to limit viral dissemination and persistence of viral reservoirs in mucosal sites.
- Published
- 2021
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