41 results on '"Lluis Ballell"'
Search Results
2. The repurposing of Tebipenem pivoxil as alternative therapy for severe gastrointestinal infections caused by extensively drug-resistant Shigella spp
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Elena Fernández Álvaro, Phat Voong Vinh, Cristina de Cozar, David R Willé, Beatriz Urones, Alvaro Cortés, Alan Price, Nhu Tran Do Hoang, Tuyen Ha Thanh, Molly McCloskey, Shareef Shaheen, Denise Dayao, Amanda Martinot, Jaime de Mercado, Pablo Castañeda, Adolfo García-Perez, Benson Singa, Patricia Pavlinac, Judd Walson, Maria Santos Martínez-Martínez, Samuel LM Arnold, Saul Tzipori, Lluis Ballell Pages, and Stephen Baker
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Shigella spp ,drug discovery ,multi-drug resistance ,dysentery ,diarrhoea ,carbapenems ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Background: Diarrhoea remains one of the leading causes of childhood mortality globally. Recent epidemiological studies conducted in low-middle income countries (LMICs) identified Shigella spp. as the first and second most predominant agent of dysentery and moderate diarrhoea, respectively. Antimicrobial therapy is often necessary for Shigella infections; however, we are reaching a crisis point with efficacious antimicrobials. The rapid emergence of resistance against existing antimicrobials in Shigella spp. poses a serious global health problem. Methods: Aiming to identify alternative antimicrobial chemicals with activity against antimicrobial resistant Shigella, we initiated a collaborative academia-industry drug discovery project, applying high-throughput phenotypic screening across broad chemical diversity and followed a lead compound through in vitro and in vivo characterisation. Results: We identified several known antimicrobial compound classes with antibacterial activity against Shigella. These compounds included the oral carbapenem Tebipenem, which was found to be highly potent against broadly susceptible Shigella and contemporary MDR variants for which we perform detailed pre-clinical testing. Additional in vitro screening demonstrated that Tebipenem had activity against a wide range of other non-Shigella enteric bacteria. Cognisant of the risk for the development of resistance against monotherapy, we identified synergistic behaviour of two different drug combinations incorporating Tebipenem. We found the orally bioavailable prodrug (Tebipenem pivoxil) had ideal pharmacokinetic properties for treating enteric pathogens and was effective in clearing the gut of infecting organisms when administered to Shigella-infected mice and gnotobiotic piglets. Conclusions: Our data highlight the emerging antimicrobial resistance crisis and shows that Tebipenem pivoxil (licenced for paediatric respiratory tract infections in Japan) should be accelerated into human trials and could be repurposed as an effective treatment for severe diarrhoea caused by MDR Shigella and other enteric pathogens in LMICs. Funding: Tres Cantos Open Lab Foundation (projects TC239 and TC246), the Bill and Melinda Gates Foundation (grant OPP1172483) and Wellcome (215515/Z/19/Z).
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- 2022
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3. An open toolkit for tracking open science partnership implementation and impact [version 2; peer review: 2 approved]
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E. Richard Gold, Sarah E. Ali-Khan, Liz Allen, Lluis Ballell, Manoel Barral-Netto, David Carr, Damien Chalaud, Simon Chaplin, Matthew S. Clancy, Patricia Clarke, Robert Cook-Deegan, A. P. Dinsmore, Megan Doerr, Lisa Federer, Steven A. Hill, Neil Jacobs, Antoine Jean, Osmat Azzam Jefferson, Chonnettia Jones, Linda J. Kahl, Thomas M. Kariuki, Sophie N. Kassel, Robert Kiley, Elizabeth Robboy Kittrie, Bianca Kramer, Wen Hwa Lee, Emily MacDonald, Lara M. Mangravite, Elizabeth Marincola, Daniel Mietchen, Jennifer C. Molloy, Mark Namchuk, Brian A. Nosek, Sébastien Paquet, Claude Pirmez, Annabel Seyller, Malcolm Skingle, S. Nicole Spadotto, Sophie Staniszewska, and Mike Thelwall
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Medicine - Abstract
Serious concerns about the way research is organized collectively are increasingly being raised. They include the escalating costs of research and lower research productivity, low public trust in researchers to report the truth, lack of diversity, poor community engagement, ethical concerns over research practices, and irreproducibility. Open science (OS) collaborations comprise of a subset of open practices including open access publication, open data sharing and the absence of restrictive intellectual property rights with which institutions, firms, governments and communities are experimenting in order to overcome these concerns. We gathered two groups of international representatives from a large variety of stakeholders to construct a toolkit to guide and facilitate data collection about OS and non-OS collaborations. Ultimately, the toolkit will be used to assess and study the impact of OS collaborations on research and innovation. The toolkit contains the following four elements: 1) an annual report form of quantitative data to be completed by OS partnership administrators; 2) a series of semi-structured interview guides of stakeholders; 3) a survey form of participants in OS collaborations; and 4) a set of other quantitative measures best collected by other organizations, such as research foundations and governmental or intergovernmental agencies. We opened our toolkit to community comment and input. We present the resulting toolkit for use by government and philanthropic grantors, institutions, researchers and community organizations with the aim of measuring the implementation and impact of OS partnership across these organizations. We invite these and other stakeholders to not only measure, but to share the resulting data so that social scientists and policy makers can analyse the data across projects.
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- 2019
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4. Antitubercular drugs for an old target: GSK693 as a promising InhA direct inhibitor
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María Martínez-Hoyos, Esther Perez-Herran, Gulcin Gulten, Lourdes Encinas, Daniel Álvarez-Gómez, Emilio Alvarez, Santiago Ferrer-Bazaga, Adolfo García-Pérez, Fátima Ortega, Iñigo Angulo-Barturen, Joaquin Rullas-Trincado, Delia Blanco Ruano, Pedro Torres, Pablo Castañeda, Sophie Huss, Raquel Fernández Menéndez, Silvia González del Valle, Lluis Ballell, David Barros, Sundip Modha, Neeraj Dhar, François Signorino-Gelo, John D. McKinney, Jose Francisco García-Bustos, Jose Luis Lavandera, James C. Sacchettini, M. Soledad Jimenez, Nuria Martín-Casabona, Julia Castro-Pichel, and Alfonso Mendoza-Losana
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Tuberculosis ,Antibiotic ,InhA ,Bactericidal ,Drug discovery ,Single-cell imaging ,Catalase ,Medicine ,Medicine (General) ,R5-920 - Abstract
Despite being one of the first antitubercular agents identified, isoniazid (INH) is still the most prescribed drug for prophylaxis and tuberculosis (TB) treatment and, together with rifampicin, the pillars of current chemotherapy. A high percentage of isoniazid resistance is linked to mutations in the pro-drug activating enzyme KatG, so the discovery of direct inhibitors (DI) of the enoyl-ACP reductase (InhA) has been pursued by many groups leading to the identification of different enzyme inhibitors, active against Mycobacterium tuberculosis (Mtb), but with poor physicochemical properties to be considered as preclinical candidates. Here, we present a series of InhA DI active against multidrug (MDR) and extensively (XDR) drug-resistant clinical isolates as well as in TB murine models when orally dosed that can be a promising foundation for a future treatment.
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- 2016
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5. Mycobacterial dihydrofolate reductase inhibitors identified using chemogenomic methods and in vitro validation.
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Grace Mugumbate, Katherine A Abrahams, Jonathan A G Cox, George Papadatos, Gerard van Westen, Joël Lelièvre, Szymon T Calus, Nicholas J Loman, Lluis Ballell, David Barros, John P Overington, and Gurdyal S Besra
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Medicine ,Science - Abstract
The lack of success in target-based screening approaches to the discovery of antibacterial agents has led to reemergence of phenotypic screening as a successful approach of identifying bioactive, antibacterial compounds. A challenge though with this route is then to identify the molecular target(s) and mechanism of action of the hits. This target identification, or deorphanization step, is often essential in further optimization and validation studies. Direct experimental identification of the molecular target of a screening hit is often complex, precisely because the properties and specificity of the hit are not yet optimized against that target, and so many false positives are often obtained. An alternative is to use computational, predictive, approaches to hypothesize a mechanism of action, which can then be validated in a more directed and efficient manner. Specifically here we present experimental validation of an in silico prediction from a large-scale screen performed against Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis. The two potent anti-tubercular compounds studied in this case, belonging to the tetrahydro-1,3,5-triazin-2-amine (THT) family, were predicted and confirmed to be an inhibitor of dihydrofolate reductase (DHFR), a known essential Mtb gene, and already clinically validated as a drug target. Given the large number of similar screening data sets shared amongst the community, this in vitro validation of these target predictions gives weight to computational approaches to establish the mechanism of action (MoA) of novel screening hit.
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- 2015
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6. Biochemical and structural characterization of mycobacterial aspartyl-tRNA synthetase AspS, a promising TB drug target.
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Sudagar S Gurcha, Veeraraghavan Usha, Jonathan A G Cox, Klaus Fütterer, Katherine A Abrahams, Apoorva Bhatt, Luke J Alderwick, Robert C Reynolds, Nicholas J Loman, VijayaShankar Nataraj, Carlos Alemparte, David Barros, Adrian J Lloyd, Lluis Ballell, Judith V Hobrath, and Gurdyal S Besra
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Medicine ,Science - Abstract
The human pathogen Mycobacterium tuberculosis is the causative agent of pulmonary tuberculosis (TB), a disease with high worldwide mortality rates. Current treatment programs are under significant threat from multi-drug and extensively-drug resistant strains of M. tuberculosis, and it is essential to identify new inhibitors and their targets. We generated spontaneous resistant mutants in Mycobacterium bovis BCG in the presence of 10× the minimum inhibitory concentration (MIC) of compound 1, a previously identified potent inhibitor of mycobacterial growth in culture. Whole genome sequencing of two resistant mutants revealed in one case a single nucleotide polymorphism in the gene aspS at (535)GAC>(535)AAC (D179N), while in the second mutant a single nucleotide polymorphism was identified upstream of the aspS promoter region. We probed whole cell target engagement by overexpressing either M. bovis BCG aspS or Mycobacterium smegmatis aspS, which resulted in a ten-fold and greater than ten-fold increase, respectively, of the MIC against compound 1. To analyse the impact of inhibitor 1 on M. tuberculosis AspS (Mt-AspS) activity we over-expressed, purified and characterised the kinetics of this enzyme using a robust tRNA-independent assay adapted to a high-throughput screening format. Finally, to aid hit-to-lead optimization, the crystal structure of apo M. smegmatis AspS was determined to a resolution of 2.4 Å.
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- 2014
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7. Identification of novel imidazo[1,2-a]pyridine inhibitors targeting M. tuberculosis QcrB.
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Katherine A Abrahams, Jonathan A G Cox, Vickey L Spivey, Nicholas J Loman, Mark J Pallen, Chrystala Constantinidou, Raquel Fernández, Carlos Alemparte, Modesto J Remuiñán, David Barros, Lluis Ballell, and Gurdyal S Besra
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Medicine ,Science - Abstract
Mycobacterium tuberculosis is a major human pathogen and the causative agent for the pulmonary disease, tuberculosis (TB). Current treatment programs to combat TB are under threat due to the emergence of multi-drug and extensively-drug resistant TB. Through the use of high throughput whole cell screening of an extensive compound library a number of imidazo[1,2-a]pyridine (IP) compounds were obtained as potent lead molecules active against M. tuberculosis and Mycobacterium bovis BCG. The IP inhibitors (1-4) demonstrated minimum inhibitory concentrations (MICs) in the range of 0.03 to 5 µM against a panel of M. tuberculosis strains. M. bovis BCG spontaneous resistant mutants were generated against IP 1, 3, and 4 at 5× MIC and subsequent whole genome sequencing identified a single nucleotide polymorphism (937)ACC>(937)GCC (T313A) in qcrB, which encodes the b subunit of the electron transport ubiquinol cytochrome C reductase. This mutation also conferred cross-resistance against IP 1, 3 and 4 demonstrating a common target. Gene dosage experiments confirmed M. bovis BCG QcrB as the target where over-expression in M. bovis BCG led to an increase in MIC from 0.5 to >8 µM for IP 3. An acute murine model of TB infection established bacteriostatic activity of the IP series, which await further detailed characterization.
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- 2012
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8. Tebipenem as an oral alternative for the treatment of typhoid caused by XDR Salmonella Typhi
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Elli Mylona, Farah Naz Qamar, Lluis Ballell, Abhilasha Karkey, Phat Voong Vinh, Judd L. Walson, Sabina Dongol, Elena Fernández Alvaro, Stephen Baker, Sonia Qureshi, and Tuyen Ha Thanh
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Microbiology (medical) ,Carbapenem ,Salmonella ,Tebipenem ,Salmonella typhi ,medicine.disease_cause ,complex mixtures ,Typhoid fever ,Microbiology ,chemistry.chemical_compound ,medicine ,AcademicSubjects/MED00740 ,Humans ,Pharmacology (medical) ,Shigella ,Typhoid Fever ,Original Research ,Pharmacology ,business.industry ,Salmonella paratyphi A ,Antimicrobial ,medicine.disease ,Anti-Bacterial Agents ,Infectious Diseases ,AcademicSubjects/MED00290 ,chemistry ,Carbapenems ,bacteria ,business ,AcademicSubjects/MED00230 ,medicine.drug - Abstract
BackgroundAntimicrobial therapy is essential for the treatment of enteric fever, the infection caused by Salmonella serovars Typhi and Paratyphi A. However, an increase in resistance to key antimicrobials and the emergence of MDR and XDR in Salmonella Typhi poses a major threat for efficacious outpatient treatments.ObjectivesWe recently identified tebipenem, an oral carbapenem licensed for use for respiratory tract infections in Japan, as a potential alternative treatment for MDR/XDR Shigella spp. Here, we aimed to test the in vitro antibacterial efficacy of this drug against MDR and XDR typhoidal Salmonella.MethodsWe determined the in vitro activity of tebipenem in time–kill assays against a collection of non-XDR and XDR Salmonella Typhi and Salmonella Paratyphi A (non-XDR) isolated in Nepal and Bangladesh. We also tested the efficacy of tebipenem in combination with other antimicrobials.ResultsWe found that both XDR and non-XDR Salmonella Typhi and Salmonella Paratyphi A are susceptible to tebipenem, exhibiting low MICs, and were killed within 8–24 h at 2–4×MIC. Additionally, tebipenem demonstrated synergy with two other antimicrobials and could efficiently induce bacterial killing.ConclusionsSalmonella Paratyphi A and XDR Salmonella Typhi display in vitro susceptibility to the oral carbapenem tebipenem, while synergistic activity with other antimicrobials may limit the emergence of resistance. The broad-spectrum activity of this drug against MDR/XDR organisms renders tebipenem a good candidate for clinical trials.
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- 2021
9. Optimization of Hydantoins as Potent Antimycobacterial Decaprenylphosphoryl-β-<scp>d</scp>-Ribose Oxidase (DprE1) Inhibitors
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Eugenia Meiler, Eva Maria Lopez-Roman, Sophie Huss, Ruth Casanueva, Maciej K. Rogacki, Lluis Ballell, Laura Guijarro, Eleni Pitta, Koen Augustyns, Fraser Cunningham, Olga Balabon, David Barros Aguirre, Monica Cacho, Robert H. Bates, Angel Santos-Villarejo, and Pieter Van der Veken
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medicine.drug_class ,Antitubercular Agents ,Hydantoin ,Antimycobacterial ,01 natural sciences ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,Bacterial Proteins ,In vivo ,Drug Discovery ,Ribose ,medicine ,Animals ,Humans ,Tuberculosis ,Potency ,Cytotoxicity ,Nuclear Magnetic Resonance, Biomolecular ,030304 developmental biology ,0303 health sciences ,biology ,Hydantoins ,Pharmacology. Therapy ,Hep G2 Cells ,Mycobacterium tuberculosis ,Periplasmic space ,biology.organism_classification ,3. Good health ,0104 chemical sciences ,Mice, Inbred C57BL ,Alcohol Oxidoreductases ,Chemistry ,010404 medicinal & biomolecular chemistry ,Biochemistry ,chemistry ,Molecular Medicine ,Female ,Mycobacterium - Abstract
In search of novel drugs against tuberculosis, we previously discovered and profiled a novel hydantoin-based family that demonstrated highly promising in vitro potency against M. tuberculosis. The compounds were found to be non-covalent inhibitors of DprE1, a subunit of decaprenylphosphoryl-β-D-ribose-2′-epimerase. This protein, localized in the periplasmic space of the mycobacterial cell wall, was shown to be an essential and vulnerable antimycobacterial drug target. Here, we report the further SAR exploration of this chemical family through more than 80 new analogues. Among these, the most active representatives combined sub-micromolar cellular potency and nanomolar target affinity with balanced physicochemical properties and low human cytotoxicity. Moreover, we demonstrate in vivo activity in an acute Mtb infection model and provide further proof of DprE1 being the target of the hydantoins. Overall, the hydantoin family of DprE1 inhibitors represents a promising non-covalent lead series for the discovery of novel antituberculosis agents.
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- 2020
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10. Novel Pyrazole-Containing Compounds Active against Mycobacterium tuberculosis
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Lluis Ballell, Sara Consalvi, David Barros Aguirre, Giovanna Poce, S. Alfonso, Raquel Fernandez-Menendez, Mariangela Biava, Joaquín Rullas, Giulia Venditti, Michelle Gardner, Nicoletta Desideri, Robert H. Bates, Thomas R. Ioerger, Alessandro De Logu, and Eric J. Rubin
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Tuberculosis, pyrazoles, MmpL3, drug discovery, antimycobacterials ,Tuberculosis ,biology ,010405 organic chemistry ,Chemistry ,medicine.drug_class ,Organic Chemistry ,Pyrazole ,Antimycobacterial ,medicine.disease ,biology.organism_classification ,01 natural sciences ,Biochemistry ,Molecular biology ,0104 chemical sciences ,Mycobacterium tuberculosis ,010404 medicinal & biomolecular chemistry ,chemistry.chemical_compound ,Minimum inhibitory concentration ,Drug Discovery ,Pyridine ,medicine ,Cytotoxic T cell ,Gene - Abstract
[Image: see text] In this study, a series of 49 five-membered heterocyclic compounds containing either a pyridine- or a pyrrole-type nitrogen were synthesized and tested against Mycobacterium tuberculosis. Among them, only the 1,3,5-trisubstituted pyrazoles 5–49 exhibited minimum inhibitory concentration values in the low micromolar range, and some also exhibited an improved physicochemical profile without cytotoxic effects. Three pyrazoles were subjected to an animal tuberculosis efficacy model, and compound 6 induced a statistically significant difference in lung bacterial counts compared with untreated mice. Moreover, to determine the target of this series, resistors were generated, and whole genome sequencing revealed mutations in the mmpL3 gene.
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- 2019
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11. Repurposing Infectious Disease Hits as Anti-Cryptosporidium Leads
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Case W. McNamara, Dolores Jimenez-Alfaro, Kayode K. Ojo, Matthew A. Hulverson, Molly C. McCloskey, Boris Striepen, Elena Fernández, Laura Fernández de las Heras, Lesley M. Rabago, Melissa S. Love, Mastanbabu Somepalli, Grant R. Whitman, M. Nicole Greenwood, Wesley C. Van Voorhis, Christophe L. M. J. Verlinde, Lluis Ballell, Lynn K. Barrett, Samantha A. Michaels, Félix Calderón, Ryan Choi, and Samuel L.M. Arnold
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0301 basic medicine ,biology ,030106 microbiology ,Drug target ,Cryptosporidium ,biology.organism_classification ,Virology ,03 medical and health sciences ,030104 developmental biology ,Infectious Diseases ,Cryptosporidium parvum ,Mechanism of action ,Pharmacokinetics ,Infectious disease (medical specialty) ,parasitic diseases ,medicine ,medicine.symptom ,Protein kinase A ,Repurposing - Abstract
New drugs are critically needed to treat Cryptosporidium infections, particularly for malnourished children under 2 years old in the developing world and persons with immunodeficiencies. Bioactive compounds from the Tres-Cantos GSK library that have activity against other pathogens were screened for possible repurposing against Cryptosporidium parvum growth. Nineteen compounds grouped into nine structural clusters were identified using an iterative process to remove excessively toxic compounds and screen related compounds from the Tres-Cantos GSK library. Representatives of four different clusters were advanced to a mouse model of C. parvum infection, but only one compound, an imidazole-pyrimidine, led to significant clearance of infection. This imidazole-pyrimidine compound had a number of favorable safety and pharmacokinetic properties and was maximally active in the mouse model down to 30 mg/kg given daily. Though the mechanism of action against C. parvum was not definitively established, this imidazole-pyrimidine compound inhibits the known C. parvum drug target, calcium-dependent protein kinase 1, with a 50% inhibitory concentration of 2 nM. This compound, and related imidazole-pyrimidine molecules, should be further examined as potential leads for Cryptosporidium therapeutics.
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- 2021
12. Identification and Profiling of Hydantoins—A Novel Class of Potent Antimycobacterial DprE1 Inhibitors
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Lluis Ballell, Fraser Cunningham, Monica Cacho, Olga Balabon, Christophe M. L. Vande Velde, Delia Blanco-Ruano, Argyrides Argyrou, David Barros, Sophie Huss, Eleni Pitta, Pieter Van der Veken, Koen Augustyns, Robert H. Bates, Eva Maria Lopez-Roman, and Maciej K. Rogacki
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Tuberculosis ,medicine.drug_class ,Antitubercular Agents ,Hydantoin ,Microbial Sensitivity Tests ,010402 general chemistry ,Antimycobacterial ,01 natural sciences ,Mycobacterium tuberculosis ,Structure-Activity Relationship ,chemistry.chemical_compound ,Bacterial Proteins ,Drug Stability ,Drug Discovery ,medicine ,Humans ,Structure–activity relationship ,Enzyme Inhibitors ,Cytotoxicity ,chemistry.chemical_classification ,biology ,010405 organic chemistry ,Drug candidate ,Pharmacology. Therapy ,Hydantoins ,Macrophages ,Reproducibility of Results ,Hep G2 Cells ,medicine.disease ,biology.organism_classification ,High-Throughput Screening Assays ,0104 chemical sciences ,3. Good health ,Actinobacteria ,Chemistry ,Alcohol Oxidoreductases ,Enzyme ,chemistry ,Biochemistry ,Molecular Medicine - Abstract
Tuberculosis is the leading cause of death worldwide from infectious diseases. With the development of drug-resistant strains of Mycobacterium tuberculosis, there is an acute need for new medicines with novel modes of action. Herein, we report the discovery and profiling of a novel hydantoin-based family of antimycobacterial inhibitors of the decaprenylphospho-β-d-ribofuranose 2-oxidase (DprE1). In this study, we have prepared a library of more than a 100 compounds and evaluated them for their biological and physicochemical properties. The series is characterized by high enzymatic and whole-cell activity, low cytotoxicity, and a good overall physicochemical profile. In addition, we show that the series acts via reversible inhibition of the DprE1 enzyme. Overall, the novel compound family forms an attractive base for progression to further stages of optimization and may provide a promising drug candidate in the future.
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- 2018
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13. Synthesis, antimycobacterial activity and influence on mycobacterial InhA and PknB of 12-membered cyclodepsipeptides
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Katja Laqua, Linda Liebe, Melissa Richard-Greenblatt, Esther Pérez-Herrán, Ana Guardia, Tingting Huang, Adrian Richter, Peter Imming, Shuangjun Lin, Marcel Klemm, Yossef Av-Gay, and Lluis Ballell
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0301 basic medicine ,Cell Survival ,medicine.drug_class ,Mycobacterium smegmatis ,Clinical Biochemistry ,Antitubercular Agents ,Pharmaceutical Science ,Microbial Sensitivity Tests ,Gram-Positive Bacteria ,Antimycobacterial ,01 natural sciences ,Biochemistry ,Mycobacterium tuberculosis ,03 medical and health sciences ,chemistry.chemical_compound ,Bacterial Proteins ,Cell Line, Tumor ,Depsipeptides ,Gram-Negative Bacteria ,Drug Discovery ,Human Umbilical Vein Endothelial Cells ,medicine ,Humans ,Molecular Biology ,Mycobacterium bovis ,biology ,010405 organic chemistry ,Chemistry ,INHA ,Organic Chemistry ,Isoniazid ,Autophosphorylation ,biology.organism_classification ,0104 chemical sciences ,030104 developmental biology ,Molecular Medicine ,Growth inhibition ,Oxidoreductases ,Proto-Oncogene Proteins c-akt ,medicine.drug - Abstract
In recent years, several small natural cyclopeptides and cyclodepsipeptides were reported to have antimycobacterial activity. Following this lead, a synthetic pathway was developed for a small series of 12-membered ring compounds with one amide and two ester bonds (cyclotridepsipeptides). Within the series, the ring system proved to be necessary for growth inhibition of Mycobacterium smegmatis and Mycobacterium tuberculosis in the low micromolar range. Open-chain precursors and analogues were inactive. The compounds modulated autophosphorylation of the mycobacterial protein kinase B (PknB). PknB inhibitors were active at µM concentration against mycobacteria while inducers were inactive. PknB regulates the activity of the mycobacterial reductase InhA, the target of isoniazid. The activity of the series against Mycobacterium bovis BCG InhA overexpressing strains was indistinguishable from that of the parental strain suggesting that they do not inhibit InhA. All substances were not cytotoxic (HeLa > 5 µg/ml) and did not show any significant antiproliferative effect (HUVEC > 5 µg/ml; K-562 > 5 µg/ml). Within the scope of this study, the molecular target of this new type of small cyclodepsipeptide was not identified, but the data suggest interaction with PknB or other kinases may partly cause the activity.
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- 2018
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14. In vivo potent BM635 analogue with improved drug-like properties
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Raquel Fernandez-Menendez, David Barros Aguirre, Giulio Vistoli, Martina Cocozza, Alessandro De Logu, Lluis Ballell, Giulia Venditti, S. Alfonso, Mariangela Biava, Giovanna Poce, Robert H. Bates, and Sara Consalvi
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0301 basic medicine ,Drug ,Tuberculosis ,Cell Survival ,media_common.quotation_subject ,Antitubercular Agents ,Microbial Sensitivity Tests ,anti-mycobacterials ,drug discovery ,MmpL3 ,pyrroles ,tuberculosis ,pharmacology ,drug discovery3003 pharmaceutical science ,organic chemistry ,Pharmacology ,01 natural sciences ,Mycobacterium tuberculosis ,Mice ,Structure-Activity Relationship ,03 medical and health sciences ,chemistry.chemical_compound ,In vivo ,Morpholine ,Drug Discovery ,medicine ,Animals ,Humans ,Pyrroles ,Cell Proliferation ,media_common ,Pyrrole ,Dose-Response Relationship, Drug ,Molecular Structure ,biology ,010405 organic chemistry ,Drug discovery ,Organic Chemistry ,Hep G2 Cells ,General Medicine ,medicine.disease ,biology.organism_classification ,0104 chemical sciences ,Pharmacokinetic analysis ,Mice, Inbred C57BL ,Disease Models, Animal ,030104 developmental biology ,chemistry ,Drug Design - Abstract
BM635 is the hit compound of a promising anti-TB compound class. Herein we report systematic variations around the central pyrrole core of BM635 and we describe the design, synthesis, biological evaluation, pharmacokinetic analysis, as well as in vivo TB mouse efficacy studies of novel BM635 analogues that show improved physicochemical properties. This hit-to-lead campaign led to the identification of a new analogue, 4-((1-isopropyl-5-(4-isopropylphenyl)-2-methyl-1H-pyrrol-3-yl)methyl)morpholine (17), that shows excellent activity (MIC = 0.15 μM; SI = 133) against drug-sensitive Mycobacterium tuberculosis strains, as well as efficacy in a murine model of TB infection.
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- 2018
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15. A new piperidinol derivative targeting mycolic acid transport inMycobacterium abscessus
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Christophe Biot, Faustine Dubar, Christiane Bouchier, Alexandre Pawlik, Yann Guérardel, Laurent Kremer, Albertus Viljoen, Joël Lelièvre, Roland Brosch, Lluis Ballell, Mickaël Blaise, Christian Dupont, Jean-Louis Herrmann, and Audrey Bernut
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0301 basic medicine ,chemistry.chemical_classification ,biology ,medicine.drug_class ,Phenotypic screening ,030106 microbiology ,Antibiotics ,Mycobacterium abscessus ,biology.organism_classification ,Microbiology ,In vitro ,3. Good health ,Mycolic acid ,03 medical and health sciences ,030104 developmental biology ,chemistry ,Arabinogalactan ,medicine ,Nontuberculous mycobacteria ,Molecular Biology ,Mycobacterium - Abstract
The natural resistance of Mycobacterium abscessus to most commonly available antibiotics seriously limits chemotherapeutic treatment options, which is particularly challenging for cystic fibrosis patients infected with this rapid-growing mycobacterium. New drugs with novel molecular targets are urgently needed against this emerging pathogen. However, the discovery of such new chemotypes has not been appropriately performed. Here, we demonstrate the utility of a phenotypic screen for bactericidal compounds against M. abscessus using a library of compounds previously validated for activity against M. tuberculosis. We identified a new piperidinol-based molecule, PIPD1, exhibiting potent activity against clinical M. abscessus strains in vitro and in infected macrophages. Treatment of infected zebrafish with PIPD1 correlated with increased embryo survival and decreased bacterial burden. Whole genome analysis of M. abscessus strains resistant to PIPD1 identified several mutations in MAB_4508, encoding a protein homologous to MmpL3. Biochemical analyses demonstrated that while de novo mycolic acid synthesis was unaffected, PIPD1 strongly inhibited the transport of trehalose monomycolate, thereby abrogating mycolylation of arabinogalactan. Mapping the mutations conferring resistance to PIPD1 on a MAB_4508 tridimensional homology model defined a potential PIPD1-binding pocket. Our data emphasize a yet unexploited chemical structure class against M. abscessus infections with promising translational development possibilities.
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- 2016
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16. Whole Cell Target Engagement Identifies Novel Inhibitors of Mycobacterium tuberculosis Decaprenylphosphoryl-β-<scp>d</scp>-ribose Oxidase
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David Barros Aguirre, Lluis Ballell, Sarah M. Batt, Gurdyal S. Besra, John D. McKinney, Laura Vela-Glez Del Peral, Mike Rees, Bernadette Mouzon, Robert J. Young, Christopher D. Stubbs, Esther Pérez-Herrán, Julia Castro Pichel, Argyrides Argyrou, Jonathan P. Hutchinson, Neeraj Dhar, and Monica Cacho Izquierdo
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chemistry.chemical_classification ,0303 health sciences ,Oxidase test ,biology ,010405 organic chemistry ,medicine.drug_class ,Mutant ,Flavin group ,biology.organism_classification ,Antimycobacterial ,01 natural sciences ,Molecular biology ,Cofactor ,In vitro ,0104 chemical sciences ,3. Good health ,Mycobacterium tuberculosis ,03 medical and health sciences ,Infectious Diseases ,Enzyme ,chemistry ,Biochemistry ,biology.protein ,medicine ,030304 developmental biology - Abstract
We have targeted the Mycobacterium tuberculosis decaprenylphosphoryl-β-d-ribose oxidase (Mt-DprE1) for potential chemotherapeutic intervention of tuberculosis. A multicopy suppression strategy that overexpressed Mt-DprE1 in M. bovis BCG was used to profile the publically available GlaxoSmithKline antimycobacterial compound set, and one compound (GSK710) was identified that showed an 8-fold higher minimum inhibitory concentration relative to the control strain. Analogues of GSK710 show a clear relationship between whole cell potency and in vitro activity using an enzymatic assay employing recombinant Mt-DprE1, with binding affinity measured by fluorescence quenching of the flavin cofactor of the enzyme. M. bovis BCG spontaneous resistant mutants to GSK710 and a closely related analogue were isolated and sequencing of ten such mutants revealed a single point mutation at two sites, E221Q or G248S within DprE1, providing further evidence that DprE1 is the main target of these compounds. Finally, time-lapse microscopy experiments showed that exposure of M. tuberculosis to a compound of this series arrests bacterial growth rapidly followed by a slower cytolysis phase.
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- 2015
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17. A Focused Screen Identifies Antifolates with Activity on Mycobacterium tuberculosis
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Ana Guardia, Joaquín Rullas, Anuradha Kumar, Elena Jimenez, Ruben R. Gonzalez, Fátima Ortega, Gonzalo Colmenarejo, Lluis Ballell, Rubén M. Gómez, David Calvo, Esther Pérez, David R. Sherman, Pedro Torres, and Raquel Gabarró
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trimetrexate ,Tuberculosis ,Biology ,medicine.disease ,biology.organism_classification ,Virology ,Article ,antifolate ,Mycobacterium tuberculosis ,chemistry.chemical_compound ,Infectious Diseases ,dihydrofolate reductase ,tuberculosis ,chemistry ,Antifolate ,medicine - Abstract
Antifolates are widely used to treat several diseases but are not currently used in the first-line treatment of tuberculosis, despite evidence that some of these molecules can target Mycobacterium tuberculosis (Mtb) bacilli in vitro. To identify new antifolate candidates for animal-model efficacy studies of tuberculosis, we paired knowledge and tools developed in academia with the infrastructure and chemistry resources of a large pharmaceutical company. Together we curated a focused library of 2508 potential antifolates, which were then tested for activity against live Mtb. We identified 210 primary hits, confirmed the on-target activity of potent compounds, and now report the identification and characterization of 5 hit compounds, representative of 5 different chemical scaffolds. These antifolates have potent activity against Mtb and represent good starting points for improvement that could lead to in vivo efficacy studies.
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- 2015
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18. Mycobacterium tuberculosis Gyrase Inhibitors as a New Class of Antitubercular Drugs
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Alfonso Mendoza, Cindy Richards, Modesto J. Remuiñán, Joaquín Rullas, Iñigo Angulo-Barturen, Delia Blanco, Ermias Woldu, Julia Castro, Esther Pérez-Herrán, Ruben Gonzalez Del Rio, Monica Cacho, María Jesús Vázquez-Muñiz, David Barros, Jose Luis Lavandera, Lluis Ballell, and María Cleofé Zapatero-González
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Models, Molecular ,Tuberculosis ,medicine.drug_class ,Antitubercular Agents ,Microbial Sensitivity Tests ,Topoisomerase-I Inhibitor ,Pharmacology ,DNA gyrase ,Mycobacterium tuberculosis ,Mice ,In vivo ,Drug Discovery ,medicine ,Animals ,Pharmacology (medical) ,Enzyme Inhibitors ,Mechanisms of Action: Physiological Effects ,Mycobacterium bovis ,biology ,Drug discovery ,biology.organism_classification ,medicine.disease ,Mice, Inbred C57BL ,Infectious Diseases ,Female ,Topoisomerase I Inhibitors ,Topoisomerase inhibitor ,Fluoroquinolones - Abstract
One way to speed up the TB drug discovery process is to search for antitubercular activity among compound series that already possess some of the key properties needed in anti-infective drug discovery, such as whole-cell activity and oral absorption. Here, we present MGIs, a new series of Mycobacterium tuberculosis gyrase inhibitors, which stem from the long-term efforts GSK has dedicated to the discovery and development of novel bacterial topoisomerase inhibitors (NBTIs). The compounds identified were found to be devoid of fluoroquinolone (FQ) cross-resistance and seem to operate through a mechanism similar to that of the previously described NBTI GSK antibacterial drug candidate. The remarkable in vitro and in vivo antitubercular profiles showed by the hits has prompted us to further advance the MGI project to full lead optimization.
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- 2015
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19. Rapid Cytolysis of Mycobacterium tuberculosis by Faropenem, an Orally Bioavailable β-Lactam Antibiotic
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Lluis Ballell, Michel Arthur, Vincent Dubée, Jean-Emmanuel Hugonnet, Guillaume Cuinet, François Signorino-Gelo, Neeraj Dhar, John D. McKinney, and David Barros
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Tuberculosis ,medicine.drug_class ,Antibiotics ,Antitubercular Agents ,Biology ,Pharmacology ,beta-Lactams ,Meropenem ,Viable but nonculturable ,Microbiology ,Mycobacterium tuberculosis ,chemistry.chemical_compound ,Isoniazid ,medicine ,Experimental Therapeutics ,Pharmacology (medical) ,Faropenem ,medicine.disease ,biology.organism_classification ,Cytolysis ,Infectious Diseases ,chemistry ,Peptidyl Transferases ,medicine.drug - Abstract
Recent clinical studies indicate that meropenem, a β-lactam antibiotic, is a promising candidate for therapy of drug-resistant tuberculosis. However, meropenem is chemically unstable, requires frequent intravenous injection, and must be combined with a β-lactamase inhibitor (clavulanate) for optimal activity. Here, we report that faropenem, a stable and orally bioavailable β-lactam, efficiently kills Mycobacterium tuberculosis even in the absence of clavulanate. The target enzymes, l , d -transpeptidases, were inactivated 6- to 22-fold more efficiently by faropenem than by meropenem. Using a real-time assay based on quantitative time-lapse microscopy and microfluidics, we demonstrate the superiority of faropenem to the frontline antituberculosis drug isoniazid in its ability to induce the rapid cytolysis of single cells. Faropenem also showed superior activity against a cryptic subpopulation of nongrowing but metabolically active cells, which may correspond to the viable but nonculturable forms believed to be responsible for relapses following prolonged chemotherapy. These results identify faropenem to be a potential candidate for alternative therapy of drug-resistant tuberculosis.
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- 2015
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20. Accelerating Early Antituberculosis Drug Discovery by Creating Mycobacterial Indicator Strains That Predict Mode of Action
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Arnab Pain, Alexander Speer, Bree B. Aldridge, Susanna Commandeur, Trever C. Smith, Mae van Gemert, Joël Lelièvre, Wilbert Bitter, Maikel Boot, Meriem Bahira, Abdallah M. Abdallah, Lluis Ballell, Amit Kumar Subudhi, Medical Microbiology and Infection Prevention, AII - Infectious diseases, VU University medical center, Molecular Microbiology, and AIMMS
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0301 basic medicine ,Tuberculosis ,Transcription, Genetic ,medicine.drug_class ,Antibiotics ,Antitubercular Agents ,Microbiology ,Cell Line ,Mycobacterium tuberculosis ,03 medical and health sciences ,Mice ,SDG 3 - Good Health and Well-being ,Ciprofloxacin ,Drug Discovery ,medicine ,Isoniazid ,Animals ,Humans ,Pharmacology (medical) ,Mode of action ,Tuberculosis, Pulmonary ,Mechanisms of Action: Physiological Effects ,Mycobacterium marinum ,Ethambutol ,Pharmacology ,biology ,Base Sequence ,Sequence Analysis, RNA ,Macrophages ,Mycobacteria ,RNA sequencing ,Stress responses ,biology.organism_classification ,medicine.disease ,RNA, Bacterial ,030104 developmental biology ,Infectious Diseases ,RAW 264.7 Cells ,Drug development ,Streptomycin ,Rifampin ,medicine.drug - Abstract
Due to the rise of drug-resistant forms of tuberculosis, there is an urgent need for novel antibiotics to effectively combat these cases and shorten treatment regimens. Recently, drug screens using whole-cell analyses have been shown to be successful. However, current high-throughput screens focus mostly on stricto sensu life/death screening that give little qualitative information. In doing so, promising compound scaffolds or nonoptimized compounds that fail to reach inhibitory concentrations are missed. To accelerate early tuberculosis (TB) drug discovery, we performed RNA sequencing on Mycobacterium tuberculosis and Mycobacterium marinum to map the stress responses that follow upon exposure to subinhibitory concentrations of antibiotics with known targets, ciprofloxacin, ethambutol, isoniazid, streptomycin, and rifampin. The resulting data set comprises the first overview of transcriptional stress responses of mycobacteria to different antibiotics. We show that antibiotics can be distinguished based on their specific transcriptional stress fingerprint. Notably, this fingerprint was more distinctive in M. marinum . We decided to use this to our advantage and continue with this model organism. A selection of diverse antibiotic stress genes was used to construct stress reporters. In total, three functional reporters were constructed to respond to DNA damage, cell wall damage, and ribosomal inhibition. Subsequently, these reporter strains were used to screen a small anti-TB compound library to predict the mode of action. In doing so, we identified the putative modes of action for three novel compounds, which confirms the utility of our approach.
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- 2018
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21. A Phenotypic Based Target Screening Approach Delivers New Antitubercular CTP Synthetase Inhibitors
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Laurent R. Chiarelli, David Barros, Júlia Zemanová, Marta Esposito, Beatrice Silvia Orena, Lluis Ballell, Francesca Boldrin, Sára Szadocka, Katarína Mikušová, Maria Rosalia Pasca, Giorgia Mori, Giulia Degiacomi, Sean Ekins, Giovanna Riccardi, Riccardo Manganelli, Valentina Piano, Stanislav Huszár, Andrea Mattevi, and Joël Lelièvre
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0301 basic medicine ,Models, Molecular ,medicine.drug_class ,Pyridines ,Phenotypic screening ,030106 microbiology ,Antitubercular Agents ,Gene Expression ,Context (language use) ,Microbial Sensitivity Tests ,Biology ,Antimycobacterial ,Binding, Competitive ,Mycobacterium tuberculosis ,Small Molecule Libraries ,03 medical and health sciences ,Structure-Activity Relationship ,Adenosine Triphosphate ,Competitive ,Bacterial Proteins ,Models ,Drug Discovery ,medicine ,Structure–activity relationship ,Carbon-Nitrogen Ligases ,Binding site ,CTP synthetase ,Enzyme Inhibitors ,Drug discovery ,phenotypic screening ,Molecular ,Binding ,biology.organism_classification ,Lipids ,3. Good health ,High-Throughput Screening Assays ,Molecular Docking Simulation ,Kinetics ,Thiazoles ,030104 developmental biology ,Infectious Diseases ,Biochemistry ,target-based screening ,biology.protein ,drug discovery ,pyridine-thiazole ,Protein Binding - Abstract
Despite its great potential, the target-based approach has been mostly unsuccessful in tuberculosis drug discovery, while whole cell phenotypic screening has delivered several active compounds. However, for many of these hits, the cellular target has not yet been identified, thus preventing further target-based optimization of the compounds. In this context, the newly validated drug target CTP synthetase PyrG was exploited to assess a target-based approach of already known, but untargeted, antimycobacterial compounds. To this purpose the publically available GlaxoSmithKline antimycobacterial compound set was assayed, uncovering a series of 4-(pyridin-2-yl)thiazole derivatives which efficiently inhibit the Mycobacterium tuberculosis PyrG enzyme activity, one of them showing low activity against the human CTP synthetase. The three best compounds were ATP binding site competitive inhibitors, with Ki values ranging from 3 to 20 μM, but did not show any activity against a small panel of different prokaryotic a...
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- 2017
22. Encapsulation of Anti-Tuberculosis Drugs within Mesoporous Silica and Intracellular Antibacterial Activities
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Kideok Kim, Alfonso E. Garcia-Bennett, Jonathan Cechetto, Xin Xia, Ryangyeo Kim, Lluis Ballell, David Barros, Kevin Pethe, and Heekyoung Jeon
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Drug ,Materials science ,Tuberculosis ,General Chemical Engineering ,media_common.quotation_subject ,formulation ,Pharmacology ,mesoporous materials ,Article ,Mycobacterium tuberculosis ,lcsh:Chemistry ,medicine ,General Materials Science ,Solubility ,media_common ,tuberculosis ,solubility ,intracellular ,nanomedicine ,biology ,Mesoporous silica ,medicine.disease ,biology.organism_classification ,3. Good health ,Bioavailability ,lcsh:QD1-999 ,Antibacterial activity ,Mesoporous material - Abstract
Tuberculosis is a major problem in public health. While new effective treatments to combat the disease are currently under development, they tend suffer from poor solubility often resulting in low and/or inconsistent oral bioavailability. Mesoporous materials are here investigated in an in vitro intracellular assay, for the effective delivery of compound PA-824; a poorly soluble bactericidal agent being developed against Tuberculosis (TB). Mesoporous materials enhance the solubility of PA-824; however, this is not translated into a higher antibacterial activity in TB-infected macrophages after 5 days of incubation, where similar values are obtained. The lack of improved activity may be due to insufficient release of the drug from the mesopores in the context of the cellular environment. However, these results show promising data for the use of mesoporous particles in the context of oral delivery with expected improvements in bioavailability.
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- 2014
23. Combinations of β-Lactam Antibiotics Currently in Clinical Trials Are Efficacious in a DHP-I-Deficient Mouse Model of Tuberculosis Infection
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Joaquín Rullas, David Barros-Aguirre, Michel Arthur, Joël Lelièvre, Lluis Ballell, Andreas H. Diacon, Adolfo García-Pérez, Iñigo Angulo-Barturen, Jean-Emmanuel Hugonnet, John D. McKinney, and Neeraj Dhar
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Dipeptidases ,Tuberculosis ,medicine.drug_class ,Antibiotics ,Microbial Sensitivity Tests ,Pharmacology ,GPI-Linked Proteins ,beta-Lactams ,Staphylococcal infections ,Mycobacterium tuberculosis ,Mice ,Pharmacotherapy ,Blood drug ,Animals ,Medicine ,Pharmacology (medical) ,Lung ,Respiratory Tract Infections ,Respiratory tract infections ,biology ,business.industry ,Staphylococcal Infections ,biology.organism_classification ,medicine.disease ,Anti-Bacterial Agents ,3. Good health ,Mice, Inbred C57BL ,Clinical trial ,Disease Models, Animal ,Infectious Diseases ,Immunology ,Drug Therapy, Combination ,business - Abstract
We report here a dehydropeptidase-deficient murine model of tuberculosis (TB) infection that is able to partially uncover the efficacy of marketed broad-spectrum β-lactam antibiotics alone and in combination. Reductions of up to 2 log CFU in the lungs of TB-infected mice after 8 days of treatment compared to untreated controls were obtained at blood drug concentrations and time above the MIC ( T >MIC ) below clinically achievable levels in humans. These findings provide evidence supporting the potential of β-lactams as safe and mycobactericidal components of new combination regimens against TB with or without resistance to currently used drugs.
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- 2015
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24. Discovery of novel InhA reductase inhibitors: application of pharmacophore- and shape-based screening approach
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Lluis Ballell, Daniel Alvarez-Gomez, Siddharth Malik, Uday Chandra Kumar, Prashanta Kumar-Sahu, Sarma Jarp, Dharmarajan Sriram, S. K. Mahmood, Suneel Kumar Bvs, and Sridevi Pulakanam
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Pharmacology ,medicine.drug_class ,INHA ,Antitubercular Agents ,Mycobacterium tuberculosis ,Reductase ,Biology ,Antimycobacterial ,biology.organism_classification ,Molecular Docking Simulation ,Combinatorial chemistry ,Bacterial Proteins ,Drug development ,Docking (molecular) ,Drug Design ,Drug Discovery ,medicine ,Humans ,Tuberculosis ,Molecular Medicine ,Enzyme Inhibitors ,Pharmacophore ,Oxidoreductases - Abstract
Background: InhA is a promising and attractive target in antimycobacterial drug development. InhA is involved in the reduction of long-chain trans-2-enoyl-ACP in the type II fatty acid biosynthesis pathway of Mycobacterium tuberculosis. Recent studies have demonstrated that InhA is one of the targets for the second line antitubercular drug ethionamide. Results: In the current study, we have generated quantitative pharmacophore models using known InhA inhibitors and validated using a large test set. The validated pharmacophore model was used as a query to screen an in-house database of 400,000 compounds and retrieved 25,000 hits. These hits were further ranked based on its shape and feature similarity with potent InhA inhibitor using rapid overlay of chemical structures (OpenEye™) and subsequent hits were subjected for docking. Based on the pharmacophore, rapid overlay of chemical structures model and docking interactions, 32 compounds with more than eight chemotypes were selected, purchased and assayed for InhA inhibitory activity. Out of the 32 compounds, 28 demonstrated 10–38% inhibition against InhA at 10 µM. Conclusion: Further optimization of these analogues is in progress and will update in due course.
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- 2013
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25. Repurposing clinically approved cephalosporins for tuberculosis therapy
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David Barros, Ruben Gonzalez Del Rio, Santiago Ramón-García, Lluis Ballell, Charles J. Thompson, Alfonso Mendoza-Losana, Fraser Cunningham, Santiago Ferrer-Bazaga, Gaye Sweet, and Angel Santos Villarejo
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0301 basic medicine ,Tuberculosis ,Rifabutin ,030106 microbiology ,Pharmacology ,Article ,Mycobacterium tuberculosis ,03 medical and health sciences ,chemistry.chemical_compound ,polycyclic compounds ,Medicine ,Ethambutol ,Multidisciplinary ,biology ,business.industry ,medicine.disease ,biology.organism_classification ,bacterial infections and mycoses ,Rifapentine ,3. Good health ,chemistry ,Delamanid ,Bedaquiline ,business ,Rifampicin ,medicine.drug - Abstract
While modern cephalosporins developed for broad spectrum antibacterial activities have never been pursued for tuberculosis (TB) therapy, we identified first generation cephalosporins having clinically relevant inhibitory concentrations, both alone and in synergistic drug combinations. Common chemical patterns required for activity against Mycobacterium tuberculosis were identified using structure-activity relationships (SAR) studies. Numerous cephalosporins were synergistic with rifampicin, the cornerstone drug for TB therapy and ethambutol, a first-line anti-TB drug. Synergy was observed even under intracellular growth conditions where beta-lactams typically have limited activities. Cephalosporins and rifampicin were 4- to 64-fold more active in combination than either drug alone; however, limited synergy was observed with rifapentine or rifabutin. Clavulanate was a key synergistic partner in triple combinations. Cephalosporins (and other beta-lactams) together with clavulanate rescued the activity of rifampicin against a rifampicin resistant strain. Synergy was not due exclusively to increased rifampicin accumulation within the mycobacterial cells. Cephalosporins were also synergistic with new anti-TB drugs such as bedaquiline and delamanid. Studies will be needed to validate their in vivo activities. However, the fact that cephalosporins are orally bioavailable with good safety profiles, together with their anti-mycobacterial activities reported here, suggest that they could be repurposed within new combinatorial TB therapies.
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- 2016
26. 4-Substituted Thioquinolines and Thiazoloquinolines: Potent, Selective, and Tween-80 in vitro Dependent Families of Antitubercular Agents with Moderate in vivo Activity
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Elena Jimenez-Navarro, Jaime Escribano, Cristina Rivero-Hernández, Alfonso Mendoza-Losana, Hilda Rivera, Santiago Ferrer-Bazaga, David Barros, Esther Pérez-Herrán, Julia Castro-Pichel, Iñigo Angulo-Barturen, and Lluis Ballell
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medicine.drug_class ,Antibiotics ,Antitubercular Agents ,Polysorbates ,Microbial Sensitivity Tests ,Pharmacology ,Biology ,Biochemistry ,Mice ,Structure-Activity Relationship ,chemistry.chemical_compound ,In vivo ,Drug Discovery ,medicine ,Animals ,Tuberculosis ,General Pharmacology, Toxicology and Pharmaceutics ,Organic Chemistry ,Resazurin ,In vitro ,Mice, Inbred C57BL ,Disease Models, Animal ,chemistry ,Quinolines ,Molecular Medicine ,Female - Abstract
Two new families of closely related selective, non-cytotoxic, and potent antitubercular agents were discovered: thioquinolines and thiazoloquinolines. The compounds were found to possess potent antitubercular properties in vitro, an activity that is dependent on experimental conditions of MIC determination (resazurin test and the presence or absence of Tween-80). To clarify the therapeutic potential of these compound families, a medicinal chemistry effort was undertaken to generate a lead-like structure that would enable murine efficacy studies and help elucidate the in vivo implications of the in vitro observations. Although the final compounds showed only limited levels of systemic exposure in mice, modest levels of efficacy in vivo at nontoxic doses were observed.
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- 2011
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27. Searching for new leads for tuberculosis : design, synthesis, and biological evaluation of novel 2-quinolin-4-yloxyacetamides
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Pieter Van der Veken, Sophie Huss, Eleni Pitta, Robert H. Bates, Fraser Cunningham, Olga Balabon, Eva Maria Lopez-Roman, Maciej K. Rogacki, Lluis Ballell, Koen Augustyns, and Jurgen Joossens
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0301 basic medicine ,Stereochemistry ,medicine.drug_class ,hERG ,Antitubercular Agents ,Microbial Sensitivity Tests ,Antimycobacterial ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Structure-Activity Relationship ,Amide ,Drug Discovery ,medicine ,Structure–activity relationship ,Peptide bond ,Humans ,Solubility ,Benzoxazoles ,biology ,Dose-Response Relationship, Drug ,Molecular Structure ,010405 organic chemistry ,Chemistry ,Pharmacology. Therapy ,Quinoline ,Mycobacterium tuberculosis ,Benzoxazole ,3. Good health ,0104 chemical sciences ,030104 developmental biology ,Drug Design ,biology.protein ,Quinolines ,Molecular Medicine - Abstract
In this study, a new series of more than 60 quinoline derivatives has been synthesized and evaluated against Mycobacterium tuberculosis (H37Rv). Apart from the SAR exploration around the initial hits, the optimization process focused on the improvement of the physicochemical properties, cytotoxicity, and metabolic stability of the series. The best compounds obtained exhibited MIC values in the low micromolar range, excellent intracellular antimycobacterial activity, and an improved physicochemical profile without cytotoxic effects. Further investigation revealed that the amide bond was the source for the poor blood stability observed, while some of the compounds exhibited hERG affinity. Compound 83 which contains a benzoxazole ring instead of the amide group was found to be a good alternative, with good blood stability and no hERG affinity, providing new opportunities for the series. Overall, the obtained results suggest that further optimization of solubility and microsomal stability of the series could provide a strong lead for a new anti-TB drug development program.
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- 2016
28. Hydrolysis of clavulanate by Mycobacterium tuberculosis β-lactamase BlaC harboring a canonical SDN motif
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David Barros, Daria Soroka, Sébastien Triboulet, Michel Arthur, Lluis Ballell, Jean-Emmanuel Hugonnet, Jean-Luc Mainardi, Herman van Tilbeurgh, Fabrice Compain, Vincent Dubée, Inès Li de la Sierra-Gallay, Centre de Recherche des Cordeliers (CRC), Université Paris Diderot - Paris 7 (UPD7)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM), Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Fonction et Architecture des Assemblages Macromoléculaires (FAAM), Département Biochimie, Biophysique et Biologie Structurale (B3S), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Institut de biochimie et biophysique moléculaire et cellulaire (IBBMC), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Diseases of the Developing World [Tres Cantos, Madrid] (DDW), Tres Cantos Open Lab Foundation [London, UK] (TCOLF)-GlaxoSmithKline [Headquarters, London, UK] (GSK), ANR-10-INBS-0005,FRISBI,Infrastructure Française pour la Biologie Structurale Intégrée(2010), Université Paris Diderot - Paris 7 (UPD7)-École pratique des hautes études (EPHE)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM), Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Intégrative de la Cellule (I2BC), Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Diseases of the Developing World, GlaxoSmithKline, Madrid, ANR-10-INBS-05-01/10-INBS-0005,FRISBI,Infrastructure Française pour la Biologie Structurale Intégrée(2010), Université Pierre et Marie Curie - Paris 6 (UPMC)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université Paris Diderot - Paris 7 (UPD7)-Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM), Centre de Recherche des Cordeliers ( CRC ), Institut National de la Santé et de la Recherche Médicale ( INSERM ) -Université Paris Descartes - Paris 5 ( UPD5 ) -Université Pierre et Marie Curie - Paris 6 ( UPMC ) -École pratique des hautes études ( EPHE ) -Université Paris Diderot - Paris 7 ( UPD7 ), Institut de Biologie Intégrative de la Cellule ( I2BC ), Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Sud - Paris 11 ( UP11 ), Fonction et Architecture des Assemblages Macromoléculaires ( FAAM ), Département Biochimie, Biophysique et Biologie Structurale ( B3S ), Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Sud - Paris 11 ( UP11 ) -Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Sud - Paris 11 ( UP11 ) -Institut de Biologie Intégrative de la Cellule ( I2BC ), Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Sud - Paris 11 ( UP11 ) -Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Sud - Paris 11 ( UP11 ), Institut de biochimie et biophysique moléculaire et cellulaire ( IBBMC ), Université Paris-Sud - Paris 11 ( UP11 ) -Centre National de la Recherche Scientifique ( CNRS ), ANR-10-INSB-05-01,FRISBI,French Infrastructure for Integrated Structural Biology, Université Paris Diderot - Paris 7 ( UPD7 ) -École pratique des hautes études ( EPHE ) -Université Pierre et Marie Curie - Paris 6 ( UPMC ) -Université Paris Descartes - Paris 5 ( UPD5 ) -Institut National de la Santé et de la Recherche Médicale ( INSERM ), Université Paris-Sud - Paris 11 ( UP11 ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ), Université Paris-Sud - Paris 11 ( UP11 ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ) -Université Paris-Sud - Paris 11 ( UP11 ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ) -Institut de Biologie Intégrative de la Cellule ( I2BC ), and Université Paris-Sud - Paris 11 ( UP11 ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS ) -Université Paris-Sud - Paris 11 ( UP11 ) -Commissariat à l'énergie atomique et aux énergies alternatives ( CEA ) -Université Paris-Saclay-Centre National de la Recherche Scientifique ( CNRS )
- Subjects
Decarboxylation ,[SDV]Life Sciences [q-bio] ,Microbial Sensitivity Tests ,Biology ,Mycobacterium abscessus ,beta-Lactams ,beta-Lactam Resistance ,beta-Lactamases ,Microbiology ,Acylation ,Mycobacterium tuberculosis ,03 medical and health sciences ,chemistry.chemical_compound ,Hydrolysis ,Mechanisms of Resistance ,Clavulanic acid ,Hydrolase ,medicine ,Pharmacology (medical) ,Clavulanic Acid ,030304 developmental biology ,Pharmacology ,0303 health sciences ,[ SDV ] Life Sciences [q-bio] ,030306 microbiology ,Faropenem ,biology.organism_classification ,3. Good health ,Infectious Diseases ,Biochemistry ,chemistry ,medicine.drug - Abstract
Combinations of β-lactams with clavulanate are currently being investigated for tuberculosis treatment. Since Mycobacterium tuberculosis produces a broad spectrum β-lactamase, BlaC, the success of this approach could be compromised by the emergence of clavulanate-resistant variants, as observed for inhibitor-resistant TEM variants in enterobacteria. Previous analyses based on site-directed mutagenesis of BlaC have led to the conclusion that this risk was limited. Here, we used a different approach based on determination of the crystal structure of β-lactamase Bla MAb of Mycobacterium abscessus , which efficiently hydrolyzes clavulanate. Comparison of Bla MAb and BlaC allowed for structure-assisted site-directed mutagenesis of BlaC and identification of the G 132 N substitution that was sufficient to switch the interaction of BlaC with clavulanate from irreversible inactivation to efficient hydrolysis. The substitution, which restored the canonical SDN motif (SDG→SDN), allowed for efficient hydrolysis of clavulanate, with a more than 10 4 -fold increase in k cat (0.41 s −1 ), without affecting the hydrolysis of other β-lactams. Mass spectrometry revealed that acylation of BlaC and of its G 132 N variant by clavulanate follows similar paths, involving sequential formation of two acylenzymes. Decarboxylation of the first acylenzyme results in a stable secondary acylenzyme in BlaC, whereas hydrolysis occurs in the G 132 N variant. The SDN/SDG polymorphism defines two mycobacterial lineages comprising rapidly and slowly growing species, respectively. Together, these results suggest that the efficacy of β-lactam–clavulanate combinations may be limited by the emergence of resistance. β-Lactams active without clavulanate, such as faropenem, should be prioritized for the development of new therapies.
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- 2015
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29. β-Lactams against Tuberculosis — New Trick for an Old Dog?
- Author
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Alberto L. García-Basteiro, Florian von Groote-Bidlingmaier, Esperança Sevene, Andreas H. Diacon, Lize van der Merwe, Christoph Lange, David Barros-Aguirre, Lluis Ballell, and Marinus Barnard
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Tuberculosis ,030106 microbiology ,Antitubercular Agents ,Colony Count, Microbial ,Amoxicillin-Potassium Clavulanate Combination ,beta-Lactams ,Beta-lactam ,Mycobacterium tuberculosis ,03 medical and health sciences ,chemistry.chemical_compound ,ANTIRETROVIRAL AGENTS ,Drug Discovery ,Tuberculosis, Multidrug-Resistant ,β lactams ,medicine ,Humans ,Intensive care medicine ,Beta-Lactamase Inhibitors ,Repurposing ,biology ,business.industry ,Isoniazid ,General Medicine ,biology.organism_classification ,medicine.disease ,Surgery ,chemistry ,beta-Lactamase Inhibitors ,business ,medicine.drug - Abstract
To the Editor: New treatments are needed to combat the worldwide increase in resistance to antituberculosis drugs.1 The outlook for patients with tuberculosis who do not show a response to the key agents used in treatment — isoniazid, rifampin, fluoroquinolones, and aminoglycosides — is grim and reminiscent of the plight of patients with cancer in the era before chemotherapy.2 New agents are emerging, but the obligatory evaluation of their safety and efficacy in combination with other antituberculosis and antiretroviral agents slows the pace of progress. Repurposing or combining commercially available products may offer a faster track to new antituberculosis regimens. . . .
- Published
- 2016
- Full Text
- View/download PDF
30. Large pore mesoporous silica induced weight loss in obese mice
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Alfonso E. Garcia-Bennett, Tore Bengtsson, Natalia Kupferschmidt, Lluis Ballell, and Robert I. Csikasz
- Subjects
Blood Glucose ,medicine.medical_specialty ,Materials science ,Biomedical Engineering ,Medicine (miscellaneous) ,Bioengineering ,Development ,Body weight ,Diet, High-Fat ,chemistry.chemical_compound ,Mice ,Weight loss ,Internal medicine ,Weight Loss ,medicine ,Animals ,Humans ,General Materials Science ,Obesity ,Triglycerides ,Obese Mice ,Cholesterol ,business.industry ,Anticholesteremic Agents ,High fat diet ,Mesoporous silica ,medicine.disease ,Silicon Dioxide ,Large pore ,Biotechnology ,Mice, Inbred C57BL ,Disease Models, Animal ,Endocrinology ,Nanomedicine ,chemistry ,Adipose Tissue ,Nanoparticles ,Female ,Food Additives ,medicine.symptom ,business ,Porosity - Abstract
Background: There is a need for medical treatments to curb the rising rate of obesity. Weight reduction is correlated with a decrease in associated risk factors and cholesterol levels in humans. Amorphous silica particles have been found to exert a hypocholesterolemic effect in humans, making them popular dietary additives. Aim: To investigate the effect of mesoporous silica, which possess sharp pore size distributions, on: weight loss, cholesterol, triglycerides and glucose blood levels in obese mice. Materials & methods: Mesoporous silicas with differing pore size were mixed in the high-fat diet of obese mice. Results: Animals receiving large pore mesoporous silica with a high-fat diet show a significant reduction in body weight and fat composition, with no observable negative effects. Conclusion: Pore size is an important parameter for reduction of body weight and body fat composition by mesoporous silica, demonstrating promising signs for the treatment of obesity. Original submitted 30 January 2013; Revised submitted 20 June 2013
- Published
- 2014
31. Tetrahydropyrazolo[1,5-a]Pyrimidine-3-Carboxamide and N-Benzyl-6′,7′-Dihydrospiro[Piperidine-4,4′-Thieno[3,2-c]Pyran] Analogues with Bactericidal Efficacy against Mycobacterium tuberculosis Targeting MmpL3
- Author
-
Nalini Mehta, Fatima Ortega-Muro, Vickey L. Spivey, Jorge Esquivias, Iñigo Angulo-Barturen, María Teresa Fraile-Gabaldón, Carlos Alemparte, Nicholas Cammack, Douglas J. Minick, David J. Dow, Modesto J. Remuiñán, Lluis Ballell, Chrystala Constantinidou, María Martínez-Hoyos, Monica Cacho, Esther Pérez-Herrán, Elena Jimenez, María José Rebollo-López, David Barros, Nicholas J. Loman, Alfonso Mendoza-Losana, Mark J. Pallen, Joaquín Rullas, Veronica Sousa, Johnson Afari, Carolina González, and Gurdyal S. Besra
- Subjects
Bacterial Diseases ,Antitubercular Agents ,lcsh:Medicine ,Drug resistance ,Biochemistry ,chemistry.chemical_compound ,Mice ,Drug Discovery ,Genome Sequencing ,lcsh:Science ,0303 health sciences ,Mycobacterium bovis ,Multidisciplinary ,biology ,Multi-Drug-Resistant Tuberculosis ,Microbial Mutation ,Genomics ,Hep G2 Cells ,3. Good health ,Chemistry ,Infectious Diseases ,Treatment Outcome ,Medicine ,Cord Factors ,Research Article ,Tuberculosis ,Genotype ,Microbial Sensitivity Tests ,Microbiology ,Mycobacterium tuberculosis ,QH301 ,03 medical and health sciences ,Dogs ,Bacterial Proteins ,In vivo ,Genetic Mutation ,Chemical Biology ,Drug Resistance, Bacterial ,medicine ,Genetics ,Animals ,Humans ,Spiro Compounds ,QH426 ,Biology ,030304 developmental biology ,Cord factor ,Microbial Viability ,030306 microbiology ,lcsh:R ,biology.organism_classification ,medicine.disease ,Bridged Bicyclo Compounds, Heterocyclic ,R1 ,In vitro ,Rats ,Disease Models, Animal ,Kinetics ,chemistry ,Pyran ,Mutation ,Pyrazoles ,lcsh:Q ,Chromatography, Thin Layer ,Medicinal Chemistry - Abstract
Mycobacterium tuberculosis is a major human pathogen and the causative agent for the pulmonary disease, tuberculosis (TB). Current treatment programs to combat TB are under threat due to the emergence of multi-drug and extensively-drug resistant TB. As part of our efforts towards the discovery of new anti-tubercular leads, a number of potent tetrahydropyrazolo[1,5-a]pyrimidine-3-carboxamide(THPP) and N-benzyl-6′,7′-dihydrospiro[piperidine-4,4′-thieno[3,2-c]pyran](Spiro) analogues were recently identified against Mycobacterium tuberculosis and Mycobacterium bovis BCG through a high-throughput whole-cell screening campaign. Herein, we describe the attractive in vitro and in vivo anti-tubercular profiles of both lead series. The generation of M. tuberculosis spontaneous mutants and subsequent whole genome sequencing of several resistant mutants identified single mutations in the essential mmpL3 gene. This ‘genetic phenotype’ was further confirmed by a ‘chemical phenotype’, whereby M. bovis BCG treated with both the THPP and Spiro series resulted in the accumulation of trehalose monomycolate. In vivo efficacy evaluation of two optimized THPP and Spiro leads showed how the compounds were able to reduce >2 logs bacterial cfu counts in the lungs of infected mice.
- Published
- 2013
32. Improved BM212 MmpL3 inhibitor analogue shows efficacy in acute murine model of tuberculosis infection
- Author
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Fabrizio Manetti, Maria Rosalia Pasca, Fátima Ortega, Alessandro De Logu, Joaquín Rullas, Mariangela Biava, E Agus, Lluis Ballell, Robert H. Bates, Scott G. Franzblau, Edda De Rossi, Maurizio Botta, Baojie Wae, Martina Cocozza, Giulio Cesare Porretta, Giovanna Poce, Valentina La Rosa, S. Alfonso, Department of Medicinal Chemistry and Technologies, Institut Pasteur, Fondation Cenci Bolognetti - Istituto Pasteur Italia, Fondazione Cenci Bolognetti, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome], Diseases of the Developing World [Tres Cantos, Madrid] (DDW), Tres Cantos Open Lab Foundation [London, UK] (TCOLF)-GlaxoSmithKline [Headquarters, London, UK] (GSK), Dipartimento di Scienze della Vita e dell'Ambiente, Università di Cagliari, Dipartimento di Biologia e Biotecnologie, Università degli Studi di Pavia, Institute for Tuberculosis Research, University of Illinois [Chicago] (UIC), University of Illinois System-University of Illinois System, Dipartimento Farmaco Chimico Tecnologico, Università degli Studi di Siena, Istituto Pasteur Fondazione Cenci-Bolognetti (Italy), MIUR-PRIN 2008 (Italy), MIUR 2011 (Progetti di Ricerca di Ateneo)(Italy) and Tres Cantos Open Lab Foundation, European Project: 261378,EC:FP7:HEALTH,FP7-HEALTH-2010-single-stage,ORCHID(2011), Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome] (UNIROMA), Università degli Studi di Cagliari = University of Cagliari (UniCa), Università degli Studi di Pavia = University of Pavia (UNIPV), and Università degli Studi di Siena = University of Siena (UNISI)
- Subjects
MESH: Mycobacterium tuberculosis ,Mouse ,Druggability ,MESH: Piperazines ,lcsh:Medicine ,Pharmacology ,Piperazines ,chemistry.chemical_compound ,Mice ,Drug Discovery ,MESH: Animals ,MESH: Tuberculosis ,lcsh:Science ,MESH: Bacterial Proteins ,MESH: Antibiotics, Antitubercular ,Drug Distribution ,0303 health sciences ,MESH: Microbial Sensitivity Tests ,Multidisciplinary ,biology ,Drug discovery ,Isoniazid ,Animal Models ,[SDV.SP]Life Sciences [q-bio]/Pharmaceutical sciences ,3. Good health ,Chemistry ,Thiomorpholine ,Infectious Diseases ,Lipophilicity ,MESH: Pyrroles ,Medicine ,Female ,medicine.drug ,Research Article ,Drugs and Devices ,Drug Research and Development ,Microbial Sensitivity Tests ,Drug Absorption ,Cell Line ,Mycobacterium tuberculosis ,MESH: Microsomes ,03 medical and health sciences ,Model Organisms ,Bacterial Proteins ,In vivo ,Genetic Mutation ,Microsomes ,medicine ,Genetics ,Animals ,Humans ,Tuberculosis ,Pyrroles ,Pharmacokinetics ,Antibiotics, Antitubercular ,Biology ,MESH: Mice ,030304 developmental biology ,MESH: Humans ,030306 microbiology ,lcsh:R ,Tropical Diseases (Non-Neglected) ,biology.organism_classification ,In vitro ,MESH: Cell Line ,chemistry ,lcsh:Q ,Medicinal Chemistry ,MESH: Female - Abstract
International audience; 1,5-Diphenyl pyrroles were previously identified as a class of compounds endowed with high in vitro efficacy against M. tuberculosis. To improve the physical chemical properties and drug-like parameters of this class of compounds, a medicinal chemistry effort was undertaken. By selecting the optimal substitution patterns for the phenyl rings at N1 and C5 and by replacing the thiomorpholine moiety with a morpholine one, a new series of compounds was produced. The replacement of the sulfur with oxygen gave compounds with lower lipophilicity and improved in vitro microsomal stability. Moreover, since the parent compound of this family has been shown to target MmpL3, mycobacterial mutants resistant to two compounds have been isolated and characterized by sequencing the mmpL3 gene; all the mutants showed point mutations in this gene. The best compound identified to date was progressed to dose-response studies in an acute murine TB infection model. The resulting ED(99) of 49 mg/Kg is within the range of commonly employed tuberculosis drugs, demonstrating the potential of this chemical series. The in vitro and in vivo target validation evidence presented here adds further weight to MmpL3 as a druggable target of interest for anti-tubercular drug discovery.
- Published
- 2013
- Full Text
- View/download PDF
33. Open Lab as a source of hits and leads against tuberculosis, malaria and kinetoplastid diseases
- Author
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Mike Strange, Alan H. Fairlamb, Leszek K. Borysiewicz, Lluis Ballell, and Nicholas Cammack
- Subjects
0301 basic medicine ,Pharmacology ,Tuberculosis ,business.industry ,Drug discovery ,fungi ,Neglected Diseases ,General Medicine ,medicine.disease ,Virology ,Malaria ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,030220 oncology & carcinogenesis ,parasitic diseases ,Drug Discovery ,medicine ,Animals ,Humans ,business ,Developing Countries ,Foundations - Abstract
Open Lab as a source of hits and leads against tuberculosis, malaria and kinetoplastid diseases
- Published
- 2016
- Full Text
- View/download PDF
34. A new chemical probe for the detection of the cancer-linked galectin-3
- Author
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Roland J. Pieters, Rob M. J. Liskamp, Monique van Scherpenzeel, Lluis Ballell, and Katerina Buchalova
- Subjects
Galectin 3 ,Chemical probe ,Biochemistry ,Mass Spectrometry ,chemistry.chemical_compound ,otorhinolaryngologic diseases ,Benzophenone ,medicine ,Biomarkers, Tumor ,Escherichia coli ,Moiety ,Humans ,Physical and Theoretical Chemistry ,Cancer marker ,Fluorescent Dyes ,Chemistry ,Organic Chemistry ,Cancer ,medicine.disease ,Fluorescence ,Covalent bond ,Galectin-3 ,Biophysics ,Indicators and Reagents ,Caco-2 Cells - Abstract
A chemical probe was developed for the detection of the emerging cancer marker galectin-3. The probe contains a benzophenone moiety which covalently attaches itself to the protein upon binding and irradiation. Introduction of a fluorescent label via ‘click’ chemistry allows the labelled proteins to be visualized in a gel. With the probe, selective visualization of galectin-3 in protein mixtures was shown and remarkably even in cell lysates.
- Published
- 2006
35. Identification of Novel Imidazo[1,2-a]pyridine Inhibitors Targeting M. tuberculosis QcrB
- Author
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Vickey L. Spivey, Jonathan A. G. Cox, Katherine A. Abrahams, Modesto J. Remuiñán, David Barros, Mark J. Pallen, Carlos Alemparte, Gurdyal S. Besra, Lluis Ballell, Nicholas J. Loman, Raquel M. Fernández, and Chrystala Constantinidou
- Subjects
Bacterial Diseases ,Pyridines ,Extensively Drug-Resistant Tuberculosis ,Antitubercular Agents ,lcsh:Medicine ,Human pathogen ,Global Health ,medicine.disease_cause ,Biochemistry ,Mice ,RA0421 ,Drug Discovery ,Genome Databases ,Genome Sequencing ,Bacterial Physiology ,lcsh:Science ,0303 health sciences ,Mycobacterium bovis ,Mutation ,Multidisciplinary ,biology ,Multi-Drug-Resistant Tuberculosis ,Multi-drug-resistant tuberculosis ,Genomics ,Functional Genomics ,Bacterial Biochemistry ,Bacterial Pathogens ,3. Good health ,Chemistry ,Infectious Diseases ,Medical Microbiology ,Microsomes, Liver ,Medicine ,Research Article ,Tuberculosis ,Microbial Sensitivity Tests ,Microbiology ,Gene dosage ,Mycobacterium ,Mycobacterium tuberculosis ,03 medical and health sciences ,Dogs ,Genomic Medicine ,Chemical Biology ,Genetics ,medicine ,Animals ,Humans ,Biology ,030304 developmental biology ,030306 microbiology ,lcsh:R ,Extensively drug-resistant tuberculosis ,Bacteriology ,biology.organism_classification ,medicine.disease ,R1 ,Rats ,Small Molecules ,Immunology ,lcsh:Q ,Medicinal Chemistry - Abstract
Mycobacterium tuberculosis is a major human pathogen and the causative agent for the pulmonary disease, tuberculosis (TB). Current treatment programs to combat TB are under threat due to the emergence of multi-drug and extensively-drug resistant TB. Through the use of high throughput whole cell screening of an extensive compound library a number of imidazo[1,2-a]pyridine (IP) compounds were obtained as potent lead molecules active against M. tuberculosis and Mycobacterium bovis BCG. The IP inhibitors (1-4) demonstrated minimum inhibitory concentrations (MICs) in the range of 0.03 to 5 µM against a panel of M. tuberculosis strains. M. bovis BCG spontaneous resistant mutants were generated against IP 1, 3, and 4 at 5× MIC and subsequent whole genome sequencing identified a single nucleotide polymorphism (937)ACC>(937)GCC (T313A) in qcrB, which encodes the b subunit of the electron transport ubiquinol cytochrome C reductase. This mutation also conferred cross-resistance against IP 1, 3 and 4 demonstrating a common target. Gene dosage experiments confirmed M. bovis BCG QcrB as the target where over-expression in M. bovis BCG led to an increase in MIC from 0.5 to >8 µM for IP 3. An acute murine model of TB infection established bacteriostatic activity of the IP series, which await further detailed characterization.
- Published
- 2012
- Full Text
- View/download PDF
36. Novel insight into the reaction of nitro, nitroso and hydroxylamino benzothiazinones and of benzoxacinones with Mycobacterium tuberculosis DprE1
- Author
-
Adrian Richter, Ines Rudolph, Ute Möllmann, Kerstin Voigt, Chun-wa Chung, Onkar M. P. Singh, Michael Rees, Alfonso Mendoza-Losana, Robert Bates, Lluís Ballell, Sarah Batt, Natacha Veerapen, Klaus Fütterer, Gurdyal Besra, Peter Imming, and Argyrides Argyrou
- Subjects
Medicine ,Science - Abstract
Abstract Nitro-substituted 1,3-benzothiazinones (nitro-BTZs) are mechanism-based covalent inhibitors of Mycobacterium tuberculosis decaprenylphosphoryl-β-D-ribose-2′-oxidase (DprE1) with strong antimycobacterial properties. We prepared a number of oxidized and reduced forms of nitro-BTZs to probe the mechanism of inactivation of the enzyme and to identify opportunities for further chemistry. The kinetics of inactivation of DprE1 was examined using an enzymatic assay that monitored reaction progress up to 100 min, permitting compound ranking according to k inact/K i values. The side-chain at the 2-position and heteroatom identity at the 1-position of the BTZs were found to be important for inhibitory activity. We obtained crystal structures with several compounds covalently bound. The data suggest that steps upstream from the covalent end-points are likely the key determinants of potency and reactivity. The results of protein mass spectrometry using a 7-chloro-nitro-BTZ suggest that nucleophilic reactions at the 7-position do not operate and support a previously proposed mechanism in which BTZ activation by a reduced flavin intermediate is required. Unexpectedly, a hydroxylamino-BTZ showed time-dependent inhibition and mass spectrometry corroborated that this hydroxylamino-BTZ is a mechanism-based suicide inhibitor of DprE1. With this BTZ derivative, we propose a new covalent mechanism of inhibition of DprE1 that takes advantage of the oxidation cycle of the enzyme.
- Published
- 2018
- Full Text
- View/download PDF
37. Antimycobacterial drug discovery using Mycobacteria-infected amoebae identifies anti-infectives and new molecular targets
- Author
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Valentin Trofimov, Sébastien Kicka, Sabrina Mucaria, Nabil Hanna, Fernando Ramon-Olayo, Laura Vela-Gonzalez Del Peral, Joël Lelièvre, Lluís Ballell, Leonardo Scapozza, Gurdyal S. Besra, Jonathan A. G. Cox, and Thierry Soldati
- Subjects
Medicine ,Science - Abstract
Abstract Tuberculosis remains a serious threat to human health world-wide, and improved efficiency of medical treatment requires a better understanding of the pathogenesis and the discovery of new drugs. In the present study, we performed a whole-cell based screen in order to complete the characterization of 168 compounds from the GlaxoSmithKline TB-set. We have established and utilized novel previously unexplored host-model systems to characterize the GSK compounds, i.e. the amoeboid organisms D. discoideum and A. castellanii, as well as a microglial phagocytic cell line, BV2. We infected these host cells with Mycobacterium marinum to monitor and characterize the anti-infective activity of the compounds with quantitative fluorescence measurements and high-content microscopy. In summary, 88.1% of the compounds were confirmed as antibiotics against M. marinum, 11.3% and 4.8% displayed strong anti-infective activity in, respectively, the mammalian and protozoan infection models. Additionally, in the two systems, 13–14% of the compounds displayed pro-infective activity. Our studies underline the relevance of using evolutionarily distant pathogen and host models in order to reveal conserved mechanisms of virulence and defence, respectively, which are potential “universal” targets for intervention. Subsequent mechanism of action studies based on generation of over-expresser M. bovis BCG strains, generation of spontaneous resistant mutants and whole genome sequencing revealed four new molecular targets, including FbpA, MurC, MmpL3 and GlpK.
- Published
- 2018
- Full Text
- View/download PDF
38. Design, synthesis and structure-activity relationship study of wollamide B; a new potential anti TB agent.
- Author
-
Henok Asfaw, Katja Laqua, Anna Maria Walkowska, Fraser Cunningham, Maria Santos Martinez-Martinez, Juan Carlos Cuevas-Zurita, Lluís Ballell-Pages, and Peter Imming
- Subjects
Medicine ,Science - Abstract
Wollamide B is a cationic antimycobacterial cyclohexapeptide that exhibits activity against Mycobacterium bovis (M. bovis) (IC50 of 3.1 μM). Aiming to define its structural activity relationship (SAR), optimizing potency and pharmacokinetic properties, libraries of analogues were synthesized following a standard Fmoc-based solid phase peptide synthesis approach. The antimycobacterial activities of wollamide B and all the synthesized analogues were tested against Mycobacterium tuberculosis (Mtb) H37Rv. Parallely, in vitro drug metabolism and pharmacokinetic (ADME) profiling was done for the synthesized compounds to evaluate their drug likeness. Among the 25 synthesized wollamides five of them showed potent activities with MICs ≤ 3.1 μM and found to be nontoxic against human HepG2 cells up to 100 μM. The results of the in vitro ADME profiling revealed the remarkable plasma stability and very good aqueous solubility of the class in general while the metabolic stability was found to be moderate to low. Of particular note, compounds 7c (MIC = 1.1 μM) and 13c (0.6 μM) that exhibited good balance of antimycobacterial activity vs. optimal pharmacokinetic properties could be used as a new lead for further development.
- Published
- 2017
- Full Text
- View/download PDF
39. Release of 50 new, drug-like compounds and their computational target predictions for open source anti-tubercular drug discovery.
- Author
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María Jose Rebollo-Lopez, Joël Lelièvre, Daniel Alvarez-Gomez, Julia Castro-Pichel, Francisco Martínez-Jiménez, George Papadatos, Vinod Kumar, Gonzalo Colmenarejo, Grace Mugumbate, Mark Hurle, Vanessa Barroso, Rob J Young, María Martinez-Hoyos, Rubén González del Río, Robert H Bates, Eva Maria Lopez-Roman, Alfonso Mendoza-Losana, James R Brown, Emilio Alvarez-Ruiz, Marc A Marti-Renom, John P Overington, Nicholas Cammack, Lluís Ballell, and David Barros-Aguire
- Subjects
Medicine ,Science - Abstract
As a follow up to the antimycobacterial screening exercise and the release of GSK´s first Tres Cantos Antimycobacterial Set (TCAMS-TB), this paper presents the results of a second antitubercular screening effort of two hundred and fifty thousand compounds recently added to the GSK collection. The compounds were further prioritized based on not only antitubercular potency but also on physicochemical characteristics. The 50 most attractive compounds were then progressed for evaluation in three different predictive computational biology algorithms based on structural similarity or GSK historical biological assay data in order to determine their possible mechanisms of action. This effort has resulted in the identification of novel compounds and their hypothesized targets that will hopefully fuel future TB drug discovery and target validation programs alike.
- Published
- 2015
- Full Text
- View/download PDF
40. Tetrahydropyrazolo[1,5-a]pyrimidine-3-carboxamide and N-benzyl-6',7'-dihydrospiro[piperidine-4,4'-thieno[3,2-c]pyran] analogues with bactericidal efficacy against Mycobacterium tuberculosis targeting MmpL3.
- Author
-
Modesto J Remuiñán, Esther Pérez-Herrán, Joaquín Rullás, Carlos Alemparte, María Martínez-Hoyos, David J Dow, Johnson Afari, Nalini Mehta, Jorge Esquivias, Elena Jiménez, Fátima Ortega-Muro, María Teresa Fraile-Gabaldón, Vickey L Spivey, Nicholas J Loman, Mark J Pallen, Chrystala Constantinidou, Douglas J Minick, Mónica Cacho, María José Rebollo-López, Carolina González, Verónica Sousa, Iñigo Angulo-Barturen, Alfonso Mendoza-Losana, David Barros, Gurdyal S Besra, Lluís Ballell, and Nicholas Cammack
- Subjects
Medicine ,Science - Abstract
Mycobacterium tuberculosis is a major human pathogen and the causative agent for the pulmonary disease, tuberculosis (TB). Current treatment programs to combat TB are under threat due to the emergence of multi-drug and extensively-drug resistant TB. As part of our efforts towards the discovery of new anti-tubercular leads, a number of potent tetrahydropyrazolo[1,5-a]pyrimidine-3-carboxamide (THPP) and N-benzyl-6',7'-dihydrospiro[piperidine-4,4'-thieno[3,2-c]pyran] (Spiro) analogues were recently identified against Mycobacterium tuberculosis and Mycobacterium bovis BCG through a high-throughput whole-cell screening campaign. Herein, we describe the attractive in vitro and in vivo anti-tubercular profiles of both lead series. The generation of M. tuberculosis spontaneous mutants and subsequent whole genome sequencing of several resistant mutants identified single mutations in the essential mmpL3 gene. This 'genetic phenotype' was further confirmed by a 'chemical phenotype', whereby M. bovis BCG treated with both the THPP and Spiro series resulted in the accumulation of trehalose monomycolate. In vivo efficacy evaluation of two optimized THPP and Spiro leads showed how the compounds were able to reduce >2 logs bacterial cfu counts in the lungs of infected mice.
- Published
- 2013
- Full Text
- View/download PDF
41. Improved BM212 MmpL3 inhibitor analogue shows efficacy in acute murine model of tuberculosis infection.
- Author
-
Giovanna Poce, Robert H Bates, Salvatore Alfonso, Martina Cocozza, Giulio Cesare Porretta, Lluís Ballell, Joaquin Rullas, Fátima Ortega, Alessandro De Logu, Emanuela Agus, Valentina La Rosa, Maria Rosalia Pasca, Edda De Rossi, Baojie Wae, Scott G Franzblau, Fabrizio Manetti, Maurizio Botta, and Mariangela Biava
- Subjects
Medicine ,Science - Abstract
1,5-Diphenyl pyrroles were previously identified as a class of compounds endowed with high in vitro efficacy against M. tuberculosis. To improve the physical chemical properties and drug-like parameters of this class of compounds, a medicinal chemistry effort was undertaken. By selecting the optimal substitution patterns for the phenyl rings at N1 and C5 and by replacing the thiomorpholine moiety with a morpholine one, a new series of compounds was produced. The replacement of the sulfur with oxygen gave compounds with lower lipophilicity and improved in vitro microsomal stability. Moreover, since the parent compound of this family has been shown to target MmpL3, mycobacterial mutants resistant to two compounds have been isolated and characterized by sequencing the mmpL3 gene; all the mutants showed point mutations in this gene. The best compound identified to date was progressed to dose-response studies in an acute murine TB infection model. The resulting ED(99) of 49 mg/Kg is within the range of commonly employed tuberculosis drugs, demonstrating the potential of this chemical series. The in vitro and in vivo target validation evidence presented here adds further weight to MmpL3 as a druggable target of interest for anti-tubercular drug discovery.
- Published
- 2013
- Full Text
- View/download PDF
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