1. Alterations in the human oral and gut microbiomes and lipidomics in COVID-19
- Author
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Haifeng Lu, Bingjie Li, Jiarui Sun, Ang Li, Quancheng Kan, Xinhua Chen, Zhigang Ren, Xiaolong Chen, Wenli Liu, Ranran Sun, Ling Wang, Xiaorui Liu, Zhongwen Wu, Xuemei Wang, Guangying Cui, Haiyu Wang, Chuansong Hu, Chao Liu, Benchen Rao, Zujiang Yu, Hongyan Ren, Hua Zhang, Hong Luo, Chengyu Yuan, and Lanjuan Li
- Subjects
Adult ,Male ,0301 basic medicine ,China ,intestinal microbiology ,Biology ,Microbiology ,Cohort Studies ,Feces ,03 medical and health sciences ,0302 clinical medicine ,lipid metabolism ,Lipidomics ,medicine ,Humans ,Microbiome ,Gut Microbiota ,Mouth ,medicine.diagnostic_test ,Gastrointestinal Microbiome ,Gastroenterology ,Case-control study ,COVID-19 ,Lipid metabolism ,Middle Aged ,Lipids ,030104 developmental biology ,Case-Control Studies ,Biomarker (medicine) ,Female ,030211 gastroenterology & hepatology ,Oral Microbiome ,Lipid profile - Abstract
ObjectiveTo characterise the oral microbiome, gut microbiome and serum lipid profiles in patients with active COVID-19 and recovered patients; evaluate the potential of the microbiome as a non-invasive biomarker for COVID-19; and explore correlations between the microbiome and lipid profile.DesignWe collected and sequenced 392 tongue-coating samples, 172 faecal samples and 155 serum samples from Central China and East China. We characterised microbiome and lipid molecules, constructed microbial classifiers in discovery cohort and verified their diagnostic potential in 74 confirmed patients (CPs) from East China and 37 suspected patients (SPs) with IgG positivity.ResultsOral and faecal microbial diversity was significantly decreased in CPs versus healthy controls (HCs). Compared with HCs, butyric acid-producing bacteria were decreased and lipopolysaccharide-producing bacteria were increased in CPs in oral cavity. The classifiers based on 8 optimal oral microbial markers (7 faecal microbial markers) achieved good diagnostic efficiency in different cohorts. Importantly, diagnostic efficacy reached 87.24% in the cross-regional cohort. Moreover, the classifiers successfully diagnosed SPs with IgG antibody positivity as CPs, and diagnostic efficacy reached 92.11% (98.01% of faecal microbiome). Compared with CPs, 47 lipid molecules, including sphingomyelin (SM)(d40:4), SM(d38:5) and monoglyceride(33:5), were depleted, and 122 lipid molecules, including phosphatidylcholine(36:4p), phosphatidylethanolamine (PE)(16:0p/20:5) and diglyceride(20:1/18:2), were enriched in confirmed patients recovery.ConclusionThis study is the first to characterise the oral microbiome in COVID-19, and oral microbiomes and lipid alterations in recovered patients, to explore their correlations and to report the successful establishment and validation of a diagnostic model for COVID-19.
- Published
- 2021