750 results on '"S. Le Gall"'
Search Results
2. Latency-reversing agents and cellular activation affect antigen processing in primary CD4 T cells
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J. Boucau, J. Madouasse, D. Wambua, M.J. Berberich, and S. Le Gall
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Microbiology ,QR1-502 ,Public aspects of medicine ,RA1-1270 - Published
- 2015
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3. Statistical study of domain-wall depinning induced by magnetic field and current in an epitaxial Co/Ni-based spin-valve wire
- Author
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Dafiné Ravelosona, Nicolas Vernier, Michel Hehn, Daniel Lacour, Thomas Hauet, Stéphane Andrieu, S. Le Gall, François Montaigne, Stéphane Mangin, Laboratoire Génie électrique et électronique de Paris (GeePs), Centre National de la Recherche Scientifique (CNRS)-CentraleSupélec-Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Paris-Sud - Paris 11 (UP11), Institut Jean Lamour (IJL), Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Institut d'électronique fondamentale (IEF), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), IMPACT N4S, ANR-10-BLAN-1005,FRIENDS,Nouveaux Materiaux Magnétique pour la physique et les applications liées au transfert de spin(2010), ANR-13-IS04-0008,COMAG,Nouvelles FonCtiOnnalités dans des structures MAGnétiques complexes à aimantation perpendiculaire(2013), ANR-13-LAB2-0008,LSTNM,Laboratoire des Sciences et Technologies des Nano-Materiaux(2013), ANR-15-IDEX-04-LUE,LUE,Lorraine Université d'Excellence(2016), Université Paris-Sud - Paris 11 (UP11)-Université Pierre et Marie Curie - Paris 6 (UPMC)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS), Université de Lorraine (UL)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), and ANR-15-IDEX-0004,LUE,Isite LUE(2015)
- Subjects
Materials science ,Condensed matter physics ,Field (physics) ,Oersted ,Spin valve ,Joule ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Magnetic field ,Domain wall (magnetism) ,[PHYS.COND.CM-GEN]Physics [physics]/Condensed Matter [cond-mat]/Other [cond-mat.other] ,0103 physical sciences ,[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci] ,[SPI.NANO]Engineering Sciences [physics]/Micro and nanotechnologies/Microelectronics ,010306 general physics ,0210 nano-technology ,Adiabatic process ,Joule heating - Abstract
International audience; We investigated the current-induced domain-wall (DW) depinning for various applied magnetic fields on a well-indentified single pinning site in epitaxial Co/Ni-based spin-valve wire of micronic width. The DW depinning process occurs with thermal activation involving a single energy barrier associated with a single pinning site. By measuring the DW depinning probability for various positive and negative applied fields (H+,H−) and currents (I+,I−), we built a map highlighting regions where spin-transfer torque (STT) effect, Joule heating, and Oersted field dominate. We then propose a method to quantify characteristic parameters of both adiabatic and nonadiabatic components of STT despite the presence of other effects due to current injection. The suitability of the method is validated by the fact the extracted values are close to those obtained previously on single [Co/Ni] layer where Oersted field and Joule effects were negligible.
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- 2018
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4. Si doped GaP layers grown on Si wafers by low temperature PE-ALD
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Alexander S. Gudovskikh, A. A. Bukatin, E.V. Nikitina, D. A. Kudryashov, Ivan A. Morozov, K. S. Zelentsov, Alexandra Levtchenko, S. Le Gall, Artem Baranov, A. V. Uvarov, Ivan Mukhin, Jean-Paul Kleider, Saint Petersburg University (SPBU), Laboratoire Génie électrique et électronique de Paris (GeePs), Université Paris-Sud - Paris 11 (UP11)-Université Pierre et Marie Curie - Paris 6 (UPMC)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS), Saint-Petersburg Scientific Center, Russian Academy of Sciences [Moscow] (RAS), PHC Kolmogorov Program (35522TL), PRC PacSific, and Centre National de la Recherche Scientifique (CNRS)-CentraleSupélec-Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Paris-Sud - Paris 11 (UP11)
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010302 applied physics ,Electron mobility ,Materials science ,Silicon ,Renewable Energy, Sustainability and the Environment ,business.industry ,Doping ,[SPI.NRJ]Engineering Sciences [physics]/Electric power ,chemistry.chemical_element ,Heterojunction ,02 engineering and technology ,021001 nanoscience & nanotechnology ,7. Clean energy ,01 natural sciences ,chemistry.chemical_compound ,Atomic layer deposition ,Band bending ,chemistry ,0103 physical sciences ,Gallium phosphide ,[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci] ,Optoelectronics ,Trimethylgallium ,0210 nano-technology ,business - Abstract
International audience; Low-temperature plasma enhanced atomic layer deposition (PE-ALD) was successfully used to grow silicon (Si) doped amorphous and microcrystalline gallium phosphide (GaP) layers onto p-type Si wafers for the fabrication of n-GaP/p-Si heterojunction solar cells. PE-ALD was realized at 380 °C with continuous H2 plasma discharge and the alternate use of phosphine and trimethylgallium as sources of P and Ga atoms, respectively. The layers were doped with silicon thanks to silane (SiH4) diluted in H2 that was introduced as a separated step. High SiH4 dilution in H2 (0.1%) allows us to deposit stoichiometric GaP layers. Hall measurements performed on the GaP:Si/p-Si structures reveal the presence of an n-type layer with a sheet electron density of 6–10 × 1013 cm−2 and an electron mobility of 13–25 cm2 V−1 s−1 at 300 K. This is associated with the formation of a strong inversion layer in the p-Si substrate due to strong band bending at the GaP/Si interface. GaP:Si/p-Si heterostructures exhibit a clear photovoltaic effect, with the performance being currently limited by the poor quality of the p-Si wafers and reflection losses at the GaP surface. This opens interesting perspectives for Si doped GaP deposited by PE-ALD for the fabrication of p-Si based heterojunction solar cells.
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- 2018
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5. The Spectral Nature of Titan's Major Geomorphological Units: Constraints on Surface Composition
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Solomonidou, A. Coustenis, A. Lopes, R.M.C. Malaska, M.J. Rodriguez, S. Drossart, P. Elachi, C. Schmitt, B. Philippe, S. Janssen, M. Hirtzig, M. Wall, S. Sotin, C. Lawrence, K. Altobelli, N. Bratsolis, E. Radebaugh, J. Stephan, K. Brown, R.H. Le Mouélic, S. Le Gall, A. Villanueva, E.V. Brossier, J.F. Bloom, A.A. Witasse, O. Matsoukas, C. Schoenfeld, A.
- Abstract
We investigate Titan's low-latitude and midlatitude surface using spectro-imaging near-infrared data from Cassini/Visual and Infrared Mapping Spectrometer. We use a radiative transfer code to first evaluate atmospheric contributions and then extract the haze and the surface albedo values of major geomorphological units identified in Cassini Synthetic Aperture Radar data, which exhibit quite similar spectral response to the Visual and Infrared Mapping Spectrometer data. We have identified three main categories of albedo values and spectral shapes, indicating significant differences in the composition among the various areas. We compare with linear mixtures of three components (water ice, tholin-like, and a dark material) at different grain sizes. Due to the limited spectral information available, we use a simplified model, with which we find that each albedo category of regions of interest can be approximately fitted with simulations composed essentially by one of the three surface candidates. Our fits of the data are overall successful, except in some cases at 0.94, 2.03, and 2.79 μm, indicative of the limitations of our simplistic compositional model and the need for additional components to reproduce Titan's complex surface. Our results show a latitudinal dependence of Titan's surface composition, with water ice being the major constituent at latitudes beyond 30°N and 30°S, while Titan's equatorial region appears to be dominated partly by a tholin-like or by a very dark unknown material. The albedo differences and similarities among the various geomorphological units give insights on the geological processes affecting Titan's surface and, by implication, its interior. We discuss our results in terms of origin and evolution theories. ©2018. American Geophysical Union. All Rights Reserved.
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- 2018
6. Enzymatic synthesis of polysaccharide-based copolymers
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Pierre Roblin, Florent Grimaud, Laurence Tarquis, Xavier Falourd, Denis Lourdin, Pauline Faucard, Sandrine Morel, Agnès Rolland-Sabaté, Magali Remaud-Simeon, S. Le Gall, Sandra Pizzut-Serin, Gabrielle Potocki-Véronèse, Claire Moulis, Laboratoire d'Ingénierie des Systèmes Biologiques et des Procédés (LISBP), Centre National de la Recherche Scientifique (CNRS)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut National de la Recherche Agronomique (INRA), Unité de recherche sur les Biopolymères, Interactions Assemblages (BIA), Institut National de la Recherche Agronomique (INRA), Sécurité et Qualité des Produits d'Origine Végétale (SQPOV), Institut National de la Recherche Agronomique (INRA)-Avignon Université (AU), Region Midi-Pyrenees, European Regional Development Fund, ANR 14-CE27-0011-02, ANR-11-INBS-0012, Avignon Université (AU)-Institut National de la Recherche Agronomique (INRA), Laboratoire de Génie Chimique (LGC), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS), Avignon Université (AU)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), ANR-11-INBS-0012,PHENOME,Centre français de phénomique végétale(2011), Institut National de la Recherche Agronomique (INRA)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique (Toulouse) (Toulouse INP), and Université de Toulouse (UT)
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copolymère ,glucane ,[SDV.BIO]Life Sciences [q-bio]/Biotechnology ,Stereochemistry ,Biotechnologies ,02 engineering and technology ,Degree of polymerization ,010402 general chemistry ,medicine.disease_cause ,01 natural sciences ,Chemical synthesis ,Dextransucrase ,Leuconostoc citreum ,medicine ,Copolymer ,synthèse chimique ,Environmental Chemistry ,copolymer ,biology ,Chemistry ,glucan ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Pollution ,Alternansucrase ,0104 chemical sciences ,enzyme ,Polymerization ,Leuconostoc mesenteroides ,0210 nano-technology ,chemical synthesis - Abstract
The design of enzymatic routes for the production of biosourced copolymers represents an attractive alternative to chemical synthesis from fossil carbon. In this paper, we explore the potential of glycosynthesizing enzymes to produce novel block copolymers composed of various covalently-linked α-glucans with contrasting structures and physicochemical properties. To this end, various glucansucrases able to synthesize α-glucans with different types of α-osidic bonds from sucrose were tested for their ability to elongate oligosaccharide and polysaccharide acceptors with different structures from the native polymer synthesized by each enzyme. We showed that two enzymes – namely, the alternansucrase from Leuconostoc mesenteroides NRRL B-1355 (specific for α(1 → 6)/α(1 → 3)-linked alternan synthesis) and the dextransucrase DSR-MΔ1 from Leuconostoc citreum NRRL B-1299 (specific for α(1 → 6)-linked dextran formation) – were able to elongate α(1 → 4)-linked amylose and α(1 → 6)/α(1 → 3)-linked alternan respectively. Carrying out stepwise acceptor reactions, and after optimization of the acceptor size and donor/acceptor ratio, two types of diblock copolymers were synthesized – a dextran-b-alternan and an alternan-b-amylose – as well as the triblock copolymer dextran-b-alternan-b-amylose. Their structural characterization, performed by combining chromatographic, NMR and permethylation analyses, showed that the copolymer polymerization degree ranged from 29 to 170, which is the highest degree of polymerization ever reported for an enzymatically synthesized polysaccharide-based copolymer. The addition of dextran and alternan blocks to amylose resulted in conformational modifications and related flexibility changes, as demonstrated by small angle X-ray scattering.
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- 2018
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7. Effect of spin transfer torque on domain wall motion regimes in [Co/Ni] superlattice wires
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Nicolas Vernier, Stéphane Andrieu, Thomas Hauet, André Thiaville, Stéphane Mangin, S. Le Gall, Dafiné Ravelosona, François Montaigne, Joao Sampaio, Laboratoire Génie électrique et électronique de Paris (GeePs), Université Paris-Sud - Paris 11 (UP11)-Université Pierre et Marie Curie - Paris 6 (UPMC)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS), Institut Jean Lamour (IJL), Institut de Chimie du CNRS (INC)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Institut d'électronique fondamentale (IEF), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Physique des Solides (LPS), Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11), IMPACT N4S, ANR-10-BLAN-1005,FRIENDS,Nouveaux Materiaux Magnétique pour la physique et les applications liées au transfert de spin(2010), ANR-13-IS04-0008,COMAG,Nouvelles FonCtiOnnalités dans des structures MAGnétiques complexes à aimantation perpendiculaire(2013), ANR-13-LAB2-0008,LSTNM,Laboratoire des Sciences et Technologies des Nano-Materiaux(2013), ANR-15-IDEX-0004,LUE,Isite LUE(2015), and Université de Lorraine (UL)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
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Physics ,[PHYS]Physics [physics] ,Condensed matter physics ,Field (physics) ,Superlattice ,Spin-transfer torque ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Displacement (vector) ,Magnetic field ,Domain wall (magnetism) ,0103 physical sciences ,[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci] ,Current (fluid) ,[PHYS.COND]Physics [physics]/Condensed Matter [cond-mat] ,[SPI.NANO]Engineering Sciences [physics]/Micro and nanotechnologies/Microelectronics ,010306 general physics ,0210 nano-technology ,Adiabatic process - Abstract
International audience; The combined effect of magnetic field and current on domain wall motion is investigated in epitaxial [Co/Ni] microwires. Both thermally activated and flow regimes are found to be strongly affected by current. All experimental data can be understood by taking into account both adiabatic and nonadiabatic components of the spin transfer torque, the parameters of which are extracted. In the precessional flow regime, it is shown that the domain wall can move in the electron flow direction against a strong applied field, as previously observed. In addition, for a large range of applied magnetic field and injected current, a stochastic domain wall displacement after each pulse is observed. Two-dimensional micromagnetic simulations, including some disorder, show a random fluctuation of the domain wall position that qualitatively matches the experimental results.
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- 2017
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8. Capacitance characterization of GaP/n-Si structures grown by PE-ALD
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S. Le Gall, Artem Baranov, Alexander S. Gudovskikh, Jean-Paul Kleider, Arouna Darga, Laboratoire Génie électrique et électronique de Paris (GeePs), Université Paris-Sud - Paris 11 (UP11)-Université Pierre et Marie Curie - Paris 6 (UPMC)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS), Saint-Petersburg Scientific Center, Russian Academy of Sciences [Moscow] (RAS), Saint Petersburg Electrotechnical University 'LETI', LAMSOL and PHC Kolmogorov, and LAMSOL
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010302 applied physics ,History ,Thin layers ,Deep-level transient spectroscopy ,Materials science ,business.industry ,Schottky diode ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Space charge ,Capacitance ,Computer Science Applications ,Education ,Atomic layer deposition ,Etching (microfabrication) ,0103 physical sciences ,[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci] ,Optoelectronics ,0210 nano-technology ,business ,Layer (electronics) - Abstract
International audience; Thin layers of μc-GaP and a-GaP grown on n- type silicon wafers by plasmaenhanced atomic layer deposition at 380 C are characterized by space charge capacitance techniques, C-V profiling and deep level transient spectroscopy (DLTS). Two defect levels with activation energies of 0.30 eV and 0.80 eV were detected by DLTS in the μc-GaP/n-Si structure. Measurements performed on Schottky barriers formed on n-Si after selective etching of the GaPlayer did not reveal any defect level meaning that the observed defects in the μc-GaP/n-Si structure are related to μc-GaP layer.
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- 2017
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9. Latency-reversing agents and cellular activation affect antigen processing in primary CD4 T cells
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S. Le Gall, Daniel Wambua, J. Boucau, Matthew J. Berberich, and J. Madouasse
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Primary (chemistry) ,Epidemiology ,business.industry ,Antigen processing ,Immunology ,Public Health, Environmental and Occupational Health ,Affect (psychology) ,Microbiology ,QR1-502 ,Infectious Diseases ,Virology ,Medicine ,Reversing ,Latency (engineering) ,Public aspects of medicine ,RA1-1270 ,business ,Neuroscience - Published
- 2015
10. Generation and manipulation of domain walls using a thermal gradient in a ferrimagnetic TbCo wire
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Tao Liu, Michel Hehn, Thomas Hauet, François Montaigne, Matthias Georg Gottwald, S. Le Gall, Yong Xu, Stéphane Mangin, Robert Tolley, Eric E. Fullerton, Institut Jean Lamour (IJL), Institut de Chimie du CNRS (INC)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Génie électrique et électronique de Paris (GeePs), Université Paris-Sud - Paris 11 (UP11)-Université Pierre et Marie Curie - Paris 6 (UPMC)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS), Deutsches Fernerkundungsdatenzentrum / German Remote Sensing Data Center (DFD), Deutsches Zentrum für Luft- und Raumfahrt [Oberpfaffenhofen-Wessling] (DLR), and ANR-13-IS04-0008,COMAG,Nouvelles FonCtiOnnalités dans des structures MAGnétiques complexes à aimantation perpendiculaire(2013)
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Materials science ,Physics and Astronomy (miscellaneous) ,Magnetic domain ,Condensed matter physics ,Field (physics) ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Magnetic field ,Temperature gradient ,Domain wall (magnetism) ,Ferrimagnetism ,0103 physical sciences ,[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci] ,Current (fluid) ,010306 general physics ,0210 nano-technology ,Intensity (heat transfer) - Abstract
International audience; We demonstrate the ability to create, control the propagation, and annihilate domain walls in 25-nm thick Tb22Co78 ferrimagnetic alloy wires using a temperature gradient under a constant appliedfield. The temperature gradient is generated by passing a current through the wire, and the domainwall properties are imaged using Kerr microscopy. The manipulation of the domain wall is madepossible by creating a temperature gradient such that the temperature at one end of the wire isabove the compensation temperature for the TbCo alloy, while the other end remains below thecompensation temperature. By tuning the intensity of the applied magnetic field and the currentflowing inside the wire, it is possible to carefully control the domain wall position that can then bestabilized under zero applied field and current.
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- 2015
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11. Extraordinary Hall effect based magnetic logic applications
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Michel Hehn, Thomas Hauet, Tao Liu, Daniel Lacour, François Montaigne, S. Le Gall, Institut Jean Lamour (IJL), Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Génie électrique et électronique de Paris (GeePs), Centre National de la Recherche Scientifique (CNRS)-CentraleSupélec-Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Paris-Sud - Paris 11 (UP11), ANR-11-RMNP-0004,COSMIQUE,synthèse de COmposantS Magnétiques dédiés à l'Impression magnétographiQUE(2011), ANR-10-BLAN-1005,FRIENDS,Nouveaux Materiaux Magnétique pour la physique et les applications liées au transfert de spin(2010), Institut de Chimie du CNRS (INC)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), and Université Paris-Sud - Paris 11 (UP11)-Université Pierre et Marie Curie - Paris 6 (UPMC)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS)
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Physics and Astronomy (miscellaneous) ,Comparator ,Magnetic logic ,business.industry ,Computer science ,Electrical engineering ,Nanotechnology ,Robustness (computer science) ,Ferrimagnetism ,Hall effect ,Logic gate ,Comparators circuits ,[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci] ,business ,Voltage - Abstract
International audience; Extraordinary Hall Effect (EHE) based original concepts of a reconfigurable logic gate and a multibitlogic comparator are presented. They exploit the EHE voltage that develops on cross cells connectedin series that has no size limitation down to the nanometer scale. Experimental demonstrationsare performed on both micro- and nanometer lateral size crosses made of ferrimagnetic TbCo alloy.The simplicity of the device architecture and its robustness make it advantageous when comparedwith existing systems.
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- 2015
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12. Thermally activated domain wall motion in [Co/Ni](111) superlattices with perpendicular magnetic anisotropy
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Stéphane Andrieu, François Montaigne, Matthias Georg Gottwald, S. Le Gall, Nicolas Vernier, Thomas Hauet, Stéphane Mangin, Daniel Lacour, Michel Hehn, Dafiné Ravelosona, Laboratoire Génie électrique et électronique de Paris (GeePs), Centre National de la Recherche Scientifique (CNRS)-CentraleSupélec-Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Paris-Sud - Paris 11 (UP11), Institut d'électronique fondamentale (IEF), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Institut Jean Lamour (IJL), Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Deutsches Fernerkundungsdatenzentrum / German Remote Sensing Data Center (DFD), Deutsches Zentrum für Luft- und Raumfahrt [Oberpfaffenhofen-Wessling] (DLR), ANR-10-BLAN-1005,FRIENDS,Nouveaux Materiaux Magnétique pour la physique et les applications liées au transfert de spin(2010), Université Paris-Sud - Paris 11 (UP11)-Université Pierre et Marie Curie - Paris 6 (UPMC)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS), and Institut de Chimie du CNRS (INC)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS)
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Magnetization dynamics ,Materials science ,Physics and Astronomy (miscellaneous) ,Condensed matter physics ,Magnetic domain ,Field (physics) ,Superlattice ,Context (language use) ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Epitaxy ,01 natural sciences ,Condensed Matter::Materials Science ,Domain wall (magnetism) ,Creep ,Sputtering ,0103 physical sciences ,[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci] ,Grain boundary ,Thin film ,Single domain ,010306 general physics ,0210 nano-technology ,ComputingMilieux_MISCELLANEOUS - Abstract
The control of magnetic domain wall (DW) motion under the action of an electrical current is of great interest for the development of new data storage electronic devices such as magnetic racetrack memories1 or logic devices2. In this context, materials with perpendicular magnetic anisotropy (PMA) are particularly attractive3,4 since they exhibit very narrow domain walls compatible with high density storage as well as spin-orbits effect that can improve the efficiency of current-induced domain wall motion5,6. However, even if the efficiency of current driven DW motion can be enhanced, the threshold current is still limited by the presence of structural defects in the materials. Particularly, the strong interaction of narrow DWs with random nanoscale inhomogeneities can lead to a so-called thermally activated creep motion for Hdep is the depinning field. This creep regime has been observed in various ultra thin films with PMA such as for instance Co/Pt7,8, CoFe or CoFeB9. Particularly, a ln(v) versus H−1/4 dependence has been found consistent with the propagation of a 1D domain wall in a 2D weak random disorder. As these films are usually deposited by sputtering, the random disorder originates in particular from crystalline texture, interface intermixing or grain boundaries, which induce a distribution of PMA on the nanoscale. In epitaxial systems, the nature, density and distribution of structural inhomogeneities can be very different, which may give rise to a different mechanism of domain wall motion. This has been shown for example in L 1 0 FePt films with PMA10 where extended 3D microtwins induced by a relaxation process generate a dendritic like motion distinct from the creep mechanism.
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- 2015
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13. Retention of ciliates and flagellates by the oyster Crassostrea gigas in French Atlantic coastal ponds:protists as a trophic link between bacterioplankton and benthic suspension-feeders
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Martine Bréret, Christine Dupuy, S. Le Gall, and Hans J. Hartmann
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Oyster ,Microbial food web ,Ecology ,biology ,Oyster farming ,Aquatic Science ,biology.organism_classification ,Bivalvia ,Food web ,biology.animal ,Phytoplankton ,Crassostrea ,Ecology, Evolution, Behavior and Systematics ,Trophic level - Abstract
In French Atlantic coastal ponds of Charente, oysters can grow under conditions where phytoplankton production is limited by nutrients exhaustion. Such ponds typically show a high concentration of ciliates and flagellates during the growing season (1 x 104 to 3 x 105 cells l-1 in June 1997). In order to evaluate the importance of the "protozoan trophic link " for energy transfer from the " microbial food web" to large benthic suspension feeders, we offered a coastal pond community of ciliates and flagellates as potential prey to the oyster, Crassostrea gigas. Clearance rate, filtered particles and relative retention efficiency were evaluated. In the grazing experiment, 94 % of ciliates and 86 % of flagellates (size between 4 and 72 μm), were retained by the oyster. Whatever their size, protists were similarly retained by the oyster gills. In terms of carbon, oyster retain on average 126 μg carbon (C) h-1 g-1 dry weight, a value over 4 times higher than reported for phytoplankton. These results indicate that a field community of protists can contribute in coastal oyster rearing ponds to the energy requirements of the oyster Crassostrea gigas. We report here the first experimental evidence of a significant retention of a protist community by oysters, supporting the role of protists as a trophic link between picoplankton and benthic filter-feeding bivalves.
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- 1999
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14. Ingestion of a bacterivorous ciliate by the oyster Crassostrea gigas:protozoa as a trophic link between picoplankton and benthic suspension-feeders
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P. Le Gall, MB Hassen, and S. Le Gall
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0106 biological sciences ,Oyster ,food sources ,picoplankton ,Aquatic Science ,01 natural sciences ,protozoa ,biology.animal ,14. Life underwater ,Flagellate ,Picoplankton ,Ecology, Evolution, Behavior and Systematics ,Trophic level ,Ciliate ,oyster ,Ecology ,biology ,010604 marine biology & hydrobiology ,04 agricultural and veterinary sciences ,biology.organism_classification ,Benthic zone ,040102 fisheries ,0401 agriculture, forestry, and fisheries ,Crassostrea ,Microbial loop ,trophic link - Abstract
The linked concepts of 'microbial loop' and 'protozoan trophic link' have been very well documented in filter-feeding microzooplankton such as copepods, but have not been applied to energy transfer to benthic suspension-feeding macrofauna, with the exception of the recent demonstration of heterotrophic flagellate assimilation by mussels. The oyster Crassostrea gigas obtains energy resources by filtering microalgae (similar to 5 to 100 mu m). However, in turbid estuaries, light-limited phytoplanktonic production cannot entirely account for oyster energy requirements. Conversely, picoplankters (
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- 1997
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15. Domain wall motion in nanopillar spin-valves with perpendicular anisotropy driven by spin-transfer torques
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Jordan A. Katine, J. Cucchiara, Dafiné Ravelosona, Daniel B. Gopman, Eric E. Fullerton, Daniel Bedau, Andrew D. Kent, Yves Henry, Stéphane Mangin, S. Le Gall, Joo-Von Kim, Institut Jean Lamour (IJL), Institut de Chimie du CNRS (INC)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Center for Memory and Recording Research, University of California [San Diego] (UC San Diego), University of California (UC)-University of California (UC), NVIDIA Research [Austin], Institut d'électronique fondamentale (IEF), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Institut de Physique et Chimie des Matériaux de Strasbourg (IPCMS), Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)-Matériaux et Nanosciences Grand-Est (MNGE), Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Réseau nanophotonique et optique, Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS), HGST San Jose Research Center, Department of Physics [New York], New York University [New York] (NYU), NYU System (NYU)-NYU System (NYU), The Partner University Fund 'Novel Magnetic Materials for Spin Torque Physics and Devices,NSF Awards No. 1008654 and No. 1006575, ANR-10-BLAN-1005,FRIENDS,Nouveaux Materiaux Magnétique pour la physique et les applications liées au transfert de spin(2010), European Project: 257707,EC:FP7:ICT,FP7-ICT-2009-5,MAGWIRE(2010), Université de Lorraine (UL)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), University of California-University of California, Université de Strasbourg (UNISTRA)-Matériaux et nanosciences d'Alsace (FMNGE), Institut de Chimie du CNRS (INC)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Réseau nanophotonique et optique, and Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)
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010302 applied physics ,Arrhenius equation ,Materials science ,Condensed matter physics ,Dynamics (mechanics) ,Nucleation ,Giant magnetoresistance ,number(s): 8575Bb ,Condensed Matter Physics ,01 natural sciences ,Electronic, Optical and Magnetic Materials ,symbols.namesake ,Domain wall (magnetism) ,7560Lr ,7560Ch ,0103 physical sciences ,Domain (ring theory) ,symbols ,[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci] ,010306 general physics ,7547De ,Spin-½ ,Nanopillar - Abstract
International audience; Using transport measurements and micromagnetic simulations we have investigated the domain wall motion driven by spin-transfer torques in all-perpendicular hexagonal nanopillar spin-valves. In particular, we probe domain walls nucleated in the free layer of the spin-valves, which are then pinned in the devices. We have determined both the field-current state diagrams for the domain-wall state and the thermally activated dynamics of the nucleation and depinning processes. We show that the nucleation process is well-described by a modified Néel-Brown model taking into account the spin-transfer torque, whereas the depinning process is independent of the current. This is confirmed by an analytical calculation which shows that spin-torques have no effect on the Arrhenius escape rate associated with thermally activated domain wall depinning in this geometry. Furthermore, micromagnetic simulations indicate that spin-transfer only weakly affects the domain wall motion, but instead modifies the inner domain wall structure.
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- 2012
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16. Effect of HIV infection on the expression and the activity of the proteasome in primary CD4 T cells
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Mariko Shimada, J. Madouasse, S Le Gall, Christopher S Carlin, and Julie Boucau
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lcsh:Immunologic diseases. Allergy ,biology ,Antigen processing ,business.industry ,T-cell receptor ,Major histocompatibility complex ,Epitope ,Cell biology ,Infectious Diseases ,Proteasome ,Virology ,Poster Presentation ,medicine ,biology.protein ,Cytotoxic T cell ,Interferon gamma ,Antibody ,lcsh:RC581-607 ,business ,medicine.drug - Abstract
Background HIV-specific CD8 T cells responses rely on the recognition of peptide-MHC-I complexes by cognate T cell receptors. HIV-derived MHC-I epitopes result from the degradation of viral proteins by the cellular processing machinery including proteasomes and aminopeptidases. Interferon gamma changes proteasome composition and peptidase activities. We hypothesize that HIV infection might affect the expression or activities of the antigen processing machinery, either through a direct effect of the virus or indirectly through cellular activation or from the release of cytokines by surrounding infected cells.
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- 2012
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17. Variable processing and presentation of HIV epitopes in dendritic cells and macrophages to CD8 T cells
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Paul Liebesny, Jens Dinter, Pauline Gourdain, Ellen Duong, Nicole Y. Lai, T Zhu, S Le Gall, Mariko Shimada, and Edith Bracho-Sanchez
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lcsh:Immunologic diseases. Allergy ,Proteases ,biology ,business.industry ,chemical and pharmacologic phenomena ,Major histocompatibility complex ,Epitope ,Infectious Diseases ,HIV Antigens ,Virology ,Poster Presentation ,Immunology ,biology.protein ,Cytotoxic T cell ,Medicine ,Antibody ,lcsh:RC581-607 ,Receptor ,business ,Intracellular - Abstract
Background Whether HIV-infectable subsets, such as CD4 T cells, monocytes, macrophages and dendritic cells (DCs), have equivalent capacity to produce and present MHC-I restricted epitopes to HIV-specific CD8 T cells is unknown. MHC-I epitopes are processed by an intracellular degradation pathway involving multiple proteases. In this study we analyzed the effect of toll-like receptor (TLR) agonist-mediated maturation on the processing and presentation of HIV antigens in monocyte-derived DCs and macrophages.
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- 2012
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18. State diagram of nanopillar spin valves with perpendicular magnetic anisotropy
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Dafiné Ravelosona, Jordan A. Katine, Charles-Henri Lambert, Jonathan Z. Sun, S. Le Gall, Andrew D. Kent, C. Berthelot, Matthias Georg Gottwald, Daniel Bedau, Stéphane Mangin, H. Liu, Yves Henry, Daniel B. Gopman, J. Cucchiara, Eric E. Fullerton, Weiwei Lin, Institut Jean Lamour (IJL), Institut de Chimie du CNRS (INC)-Université de Lorraine (UL)-Centre National de la Recherche Scientifique (CNRS), Institut de Physique et Chimie des Matériaux de Strasbourg (IPCMS), Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)-Matériaux et nanosciences d'Alsace (FMNGE), Institut de Chimie du CNRS (INC)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Réseau nanophotonique et optique, Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA), Department of Physics [New York], New York University [New York] (NYU), NYU System (NYU)-NYU System (NYU), IBM T. J. Watson Research Centre, Institut d'électronique fondamentale (IEF), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), Center for Memory and Recording Research, University of California [San Diego] (UC San Diego), University of California-University of California, Novel Magnetic Materials for Spin Torque Physics and Devices,' NSF Award No. DMR-1008654, and ANR-10-BLAN-1005,FRIENDS,Nouveaux Materiaux Magnétique pour la physique et les applications liées au transfert de spin(2010)
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Physics ,Condensed matter physics ,PACS: 72.25.Ba, 85.75.Bb, 75.30.Gw ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Symmetry (physics) ,Electronic, Optical and Magnetic Materials ,Magnetic field ,Magnetic anisotropy ,0103 physical sciences ,Perpendicular ,[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci] ,State diagram ,010306 general physics ,0210 nano-technology ,Representation (mathematics) ,Nanopillar ,Spin-½ - Abstract
International audience; The spin-torque switching of metallic nanopillar spin valves showing strong perpendicular anisotropy are studied. The magnetic states of the layers depend on extrinsic parameters such as the magnetic field and the dc current applied to the device. A state diagram presents a comprehensive graph of the role of those parameters on the spin-valve magnetic response. After explaining how state diagrams can be built and the different possible representation, experimental state diagrams are studied for perpendicular devices and the influence of lateral size, temperature, and field orientation are shown. An analytical model of a purely uniaxial system is presented. It is shown that this simple model does not properly reflect the experimental results, whereas if the symmetry is broken a qualitative agreement is obtained. Finally, the possible origins of the symmetry break are discussed in light of an analytical model and numerical simulations.
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- 2012
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19. Transport mechanisms in MgO/GaAs(001) delta-doped junctions
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Philippe Schieffer, Guy Jézéquel, Bruno Lépine, Gabriel Delhaye, Pascal Turban, S. Le Gall, Institut de Physique de Rennes (IPR), Université de Rennes (UR)-Centre National de la Recherche Scientifique (CNRS), French Agence Nationale pour la Recherche (MOMES), Région Bretagne, ANR-05-NANO-0072,MOMES,Manipulation Optique, Magnétisme, Electronique de Spin(2005), Université de Rennes 1 (UR1), and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS)
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semiconductor-insulator boundaries ,Materials science ,Physics and Astronomy (miscellaneous) ,Band gap ,Thermionic emission ,02 engineering and technology ,01 natural sciences ,epitaxial layers ,Field emission ,hopping conduction ,evaporation ,0103 physical sciences ,ionization ,and desorption ,defect states ,Deposition (law) ,010302 applied physics ,Condensed matter physics ,business.industry ,hopping transport ,doping profiles ,Doping ,021001 nanoscience & nanotechnology ,Evaporation (deposition) ,Mobility edges ,Field electron emission ,energy gap ,Semiconductor ,[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci] ,0210 nano-technology ,business ,Metal-insulator-semiconductor structures ,Layer (electronics) - Abstract
International audience; The transport mechanisms through MgO ultrathin layers (0.5-1.2 nm) deposited on n-type doped GaAs(001) layers have been studied. In order to favor field emission (FE) across the junctions, a high doping concentration layer in vicinity of the semiconductor surfaces has been included. Varying doping concentration of the underlying GaAs layer we find that the dominant transport mechanism is either the variable-range hopping mechanism or a thermionic emission-like process instead of the FE process. The observation of such mechanisms can be explained by the fact that during the MgO deposition, defect states are introduced in the semiconductor band gap.
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- 2011
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20. Système rénine/angiotensine de l'utérus et de l'ovaire chez les femelles de Mammifères
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S. Le Gall, P. Leymarie, C. Féral, and Revues Inra, Import
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endocrine system ,medicine.medical_specialty ,Kidney ,Follicular atresia ,fungi ,Proteolytic enzymes ,Ovary ,Biology ,Angiotensin II ,[SDV.AEN] Life Sciences [q-bio]/Food and Nutrition ,medicine.anatomical_structure ,Endocrinology ,Theca ,Internal medicine ,[SDV.BDD] Life Sciences [q-bio]/Development Biology ,Renin–angiotensin system ,Follicular phase ,medicine ,[SDV.BDLR] Life Sciences [q-bio]/Reproductive Biology ,hormones, hormone substitutes, and hormone antagonists - Abstract
The circulating reninangiotensin system (RAS) participates in the regulation of blood pressure and electrolyte metabolism. Renin, a proteolytic enzyme, synthesized in the kidney from its biological precursor, prorenin, cleaves its substrate angiotensinogen in the blood to form the active octapeptide, angiotensin II (AII). All the RAS components are present in the reproductive system of mammals. During pregnancy, the level of prorenin increases in the plasma. The ovary is the source of this prorenin during early pregnancy and maternal decidua later on. During the menstrual cycle, the thecal of preovulatory follicles synthesize prorenin, renin and AII. Thecal renin synthesis is controlled by LH/hCG as demonstrated in vivo and in vitro in the rabbit. Ovarian renin seems to be identical to kidney renin. Prorenin appears to be the major secretory product rather than renin, which remains intracellular. AT2-type angiotensin II-receptors are expressed in the rat on follicular granulosa cells and could be down-regulated by FSH. The bovine thecal cells also express AT2-receptors, up-regulated by LH. These data are consistent with an autrocrine or paracrine role for ovarian RAS. It has been implicated in neovascularization of the follicle and regulation of steroidogenesis by increasing the androgen/estrogen ratio, an index of follicular atresia.
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- 1993
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21. Transverse-momentum selection rules for ballistic electrons at epitaxial metal/GaAs(001) interfaces
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S. Le Gall, Pascal Turban, C. Lallaizon, Philippe Schieffer, S. Di Matteo, Bruno Lépine, Guy Jézéquel, S. Guézo, Institut de Physique de Rennes (IPR), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Centre National de la Recherche Scientifique (CNRS), and Université de Rennes (UR)-Centre National de la Recherche Scientifique (CNRS)
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Ballistic transport ,Materials science ,band structure ,02 engineering and technology ,Electron ,Epitaxy ,01 natural sciences ,Condensed Matter::Materials Science ,Ballistic conduction ,0103 physical sciences ,010306 general physics ,Electronic band structure ,Spectroscopy ,Surface states ,PACS: 73.40.-c, 73.20.At, 73.23.Ad ,Electronic transport in interface structures ,Condensed matter physics ,business.industry ,Schottky diode ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,Electronic, Optical and Magnetic Materials ,electron density of states ,Semiconductor ,[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci] ,0210 nano-technology ,business - Abstract
International audience; We report on ballistic electron-emission spectroscopy on high-quality Au(110)/GaAs(001) and Fe(001)/GaAs(001) Schottky contacts. For the Au(110)/GaAs(001) interface, the ballistic current is characterized by a strong electron injection in the L valley of the GaAs conduction band. This remarkable spectroscopic feature is absent for the Fe(001)/GaAs(001) interface. These observations are explained by the different electronic structures in the two metal layers, assuming conservation of the electron transverse momentum at the metal/semiconductor epitaxial interfaces. Conversely, this comparative study suggests that the technique can be used for the analysis of local electronic states propagating in the metal films.
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- 2010
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22. Distribution of mutation frequencies among Salmonella enterica isolates from animal and human sources and genetic characterization of a Salmonella Heidelberg hypermutator
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L. Desbordes, Latifa Bousarghin, Anne Jolivet-Gougeon, Patrice Gracieux, S. Saffroy, S. Le Gall, Martine Bonnaure-Mallet, Laboratoire Génie électrique et électronique de Paris (GeePs), Université Paris-Sud - Paris 11 (UP11)-Université Pierre et Marie Curie - Paris 6 (UPMC)-CentraleSupélec-Centre National de la Recherche Scientifique (CNRS), Microbiologie : Risques Infectieux, Université de Rennes (UR)-CHU Pontchaillou [Rennes]-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )-Université de Rennes - UFR d'Odontologie (UR Odontologie), Université de Rennes (UR)-Université de Rennes (UR), Ecole Nationale Supérieure d'Agronomie et des Industries Alimentaires (ENSAIA), Université de Lorraine (UL), CHU Pontchaillou [Rennes], Université de Rennes 1 (UR1), and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-CHU Pontchaillou [Rennes]-Faculté de Chirurgie Dentaire de Rennes-Faculté d'Odontologie-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )
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congenital, hereditary, and neonatal diseases and abnormalities ,Salmonella ,Mutation rate ,[SDV]Life Sciences [q-bio] ,Somatic hypermutation ,medicine.disease_cause ,Microbiology ,03 medical and health sciences ,Bacterial Proteins ,Drug Resistance, Bacterial ,medicine ,Animals ,Humans ,Escherichia coli ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,Genetics ,0303 health sciences ,General Veterinary ,biology ,030306 microbiology ,Wild type ,Salmonella enterica ,Gene Expression Regulation, Bacterial ,General Medicine ,biology.organism_classification ,[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology ,Anti-Bacterial Agents ,[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology ,Mutation ,Salmonella Infections ,Mutation (genetic algorithm) ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,DNA mismatch repair - Abstract
Hypermutation is an important mechanism used by different Salmonella enterica subspecies enterica to regulate genetic stability in adaptation to changing environments, including antimicrobial treatments and industrial processes. Strong hypermutator strains generally contain a mutation in genes of the methyl mismatch repair (MMR) system and have mutation frequencies up to 1000-fold higher than wild type strains. The objectives of this study were to determine the distribution of mutation frequencies from a collection of 209 Salmonella strains, to genetically characterize a strong mutator, and to study MMR mutated protein-DNA binding interactions. Only one strain of S. Heidelberg was determined to have a hypermutator phenotype by virtue of its high mutation rate. Sequencing of genes of the MMR system showed a 12bp deletion in the mutS gene was present. The MMR mutated protein-DNA binding interactions were studied by bioanalysis, using the available crystal structure of a similar MutS protein from Escherichia coli. This analysis showed the small deletion in the Salmonella MutS was localized within the core domain. A retardation assay with MutS from hypermutable and wild type strains showed this mutation has no effect on MutS DNA binding. A better understanding of the genetic mechanisms of hypermutation will help to anticipate the behavior of hypermutator strains in various conditions.
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- 2009
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23. Stimulation by hCG of ovarian inactive renin synthesis in rabbit preovulatory theca cells
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P. Corvol, C. Féral, Y. Reznik, S. Le Gall, P. Leymarie, and J. Mahoudeau
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endocrine system ,Embryology ,medicine.medical_specialty ,medicine.drug_class ,Ovary ,Biology ,Chorionic Gonadotropin ,Plasma renin activity ,Endocrinology ,Ovarian Follicle ,Internal medicine ,Renin ,Follicular phase ,Renin–angiotensin system ,medicine ,Animals ,Cells, Cultured ,Granulosa Cells ,urogenital system ,Obstetrics and Gynecology ,Cell Biology ,Stimulation, Chemical ,In vitro ,medicine.anatomical_structure ,Reproductive Medicine ,Theca ,Theca Cells ,Female ,Rabbits ,Gonadotropin ,Intracellular - Abstract
The origin of ovarian renin and its regulation by hCG were investigated in rabbit periovulatory follicles and cultured preovulatory follicular cells. Intracellular content of renin in thecal cells was 8-fold greater than of granulosa cells. In vivo, administration of hCG increased intracellular content of renin in thecal but not granulosa cells. Similar results were obtained for cultured follicular cells, from which renin was partly released into the medium. In vitro, hCG increased intracellular renin content of thecal but not granulosa cells, without obvious effect on release. Approximately 95% of ovarian renin was inactive, but could be activated by trypsin. Thecal renin was antagonized in vitro by renin antiserum, indicating a specific renin activity. Our study establishes in the rabbit the thecal cell origin of ovarian inactive renin and demonstrates hCG regulation of its synthesis.
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- 1990
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24. Transport property study of MgO-GaAs(001) contacts for spin injection devices
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B. Lépine, J. C. Le Breton, Philippe Schieffer, S. Le Gall, Guy Jézéquel, Pascal Turban, Physique des atomes, lasers, molécules et surfaces (PALMS), Université de Rennes (UR)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université de Rennes 1 (UR1), and Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)
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010302 applied physics ,Materials science ,Physics and Astronomy (miscellaneous) ,business.industry ,Band gap ,Oxide ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Gallium arsenide ,chemistry.chemical_compound ,chemistry ,Reverse bias ,0103 physical sciences ,[PHYS.COND.CM-MS]Physics [physics]/Condensed Matter [cond-mat]/Materials Science [cond-mat.mtrl-sci] ,Optoelectronics ,0210 nano-technology ,business ,Spin injection ,Quantum tunnelling ,Voltage - Abstract
International audience; The electrical properties of Au/MgO/n-GaAs(001) tunnel structures have been investigated with capacitance-voltage and current-voltage measurements at room temperature with various MgO thicknesses between 0.5 and 6.0nm. For an oxide thickness higher than 2nm and for low bias voltages, the voltage essentially drops across the oxide and the structure progressively enters the high-current mode of operation with increasing reverse bias voltage, the property sought in spin injection devices. In this mode, we demonstrate that a large amount of charge accumulates at the MgO/GaAsinterface in interface traps located in the semiconductor band gap.
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- 2007
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25. Seasonal Variations in Planktonic Community Structure and Production in an Atlantic Coastal Pond: The Importance of Nanoflagellates
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M. Ryckaert, Christine Dupuy, S. Le Gall, Hans J. Hartmann, LIttoral ENvironnement et Sociétés - UMRi 7266 (LIENSs), Université de La Rochelle (ULR)-Centre National de la Recherche Scientifique (CNRS), Station de l'Houmeau, and IFREMER-DEL
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0106 biological sciences ,[SDV]Life Sciences [q-bio] ,Soil Science ,010603 evolutionary biology ,01 natural sciences ,Coastal pond ,Algae ,food source ,Animals ,14. Life underwater ,Biomass ,Ciliophora ,Atlantic Ocean ,Ecology, Evolution, Behavior and Systematics ,Trophic level ,Peridiniales ,Diatoms ,Biomass (ecology) ,Microbial food web ,Ecology ,biology ,010604 marine biology & hydrobiology ,Dinoflagellate ,Temperature ,Water ,Biodiversity ,Plankton ,biology.organism_classification ,microbial structure and production ,Food web ,Dinoflagellida ,Seasons ,nanoflagellates - Abstract
International audience; The structure and summertime production of planktonic communities and the role of nondiatom planktonic cells were studied in coastal ponds, which are areas traditionally used for fattening and greening table-sized oysters. The abundance and biomass of nano–microplanktonic protists were determined at weekly intervals between February 1998 and February 1999 in a coastal pond without oysters in the French Atlantic coast near La Rochelle. The production of these microbiotas was determined in the summer period. The structure of plankton communities revealed the following observations: (1) microphytoplanktonic cells were mostly diatoms and dinoflagellates, (2) microzooplank-tonic cells were mainly ciliates, and (3) nanoplanktonic cells were represented by pigmented (80–90% of the nanoplankton biomass) and colorless nanoflagellates. Diatoms were dominated by Naviculiineae. Dinoflagellates were dominated by Peridiniales. Oligotrichida were predominant in the ciliate community. Protist biomass levels were nine times higher from April to August (summer period 1033 mg C L _ 1) than from September to March (winter period 114 mg C L _ 1). Whatever the season, nanoflagellates were dominant in the water column (66 and 53% of the entire protist biomass in the summer and winter periods, respectively). Nanoflagellates represented the highest production of nano–microplanktonic communities (76% of carbon protist production) in the coastal pond in summer and showed the shortest generation time (7.1 h). Dinoflagellates came after nanoflagellates in production (19.5% of carbon protist production). Diatoms represented only a supplementary carbon resource available for higher trophic levels, whereas, until now, they were considered as the principal food of oysters in coastal ponds. Ciliates were a small source of carbon, but their growth rate was high. We suggest, first, that nanoflagellates represented the primary resource available in the pond and could constitute an important food resource for higher trophic levels, such as oysters, farmed in this type of pond. Overall, the system appeared to be more autotrophic than hetero-trophic. Because inorganic nutrients are quickly exhausted in a semiclosed pond, pigmented flagellates dominated the carbon biomass, production and biomass of bacteria were high (thus, the microbial food web appeared to be active in this pond), and mixotrophy seemed to be an important trophic mode there.
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- 2007
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26. Nef-induced CD4 downregulation: a diacidic sequence in human immunodeficiency virus type 1 Nef does not function as a protein sorting motif through direct binding to beta-COP
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Heather M. Craig, S. Le Gall, Katy Janvier, Serge Benichou, Oliver Schwartz, Richard Benarous, John C. Guatelli, Institut Cochin (IC UM3 (UMR 8104 / U1016)), Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Rétrovirus et Transfert Génétique, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), This work was supported by grants from ANRS, SIDACTION, and the Pasteur Institute, the National Institutes of Health (AI38201), the university-wide AIDS Research Program of the University of California (RD98-SD-051), the UCSD Center for AIDS Research (NIH AI36214), and the Research Center for AIDS and HIV Infection of the San Diego Veterans Affairs Medical Center., Institut Cochin (UM3 (UMR 8104 / U1016)), Université Paris Descartes - Paris 5 (UPD5) - Institut National de la Santé et de la Recherche Médicale (INSERM) - Centre National de la Recherche Scientifique (CNRS), Institut Pasteur [Paris] - Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM), and Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS)
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Macromolecular Substances ,CD8 Antigens ,Recombinant Fusion Proteins ,viruses ,[SDV]Life Sciences [q-bio] ,Amino Acid Motifs ,Immunology ,Endocytic cycle ,Down-Regulation ,Glutamic Acid ,Plasma protein binding ,Biology ,Endocytosis ,Coatomer Protein ,Microbiology ,Gene Products, nef ,03 medical and health sciences ,Downregulation and upregulation ,Adaptor Protein Complex gamma Subunits ,Two-Hybrid System Techniques ,Virology ,Humans ,nef Gene Products, Human Immunodeficiency Virus ,030304 developmental biology ,0303 health sciences ,030302 biochemistry & molecular biology ,Membrane Proteins ,Reproducibility of Results ,virus diseases ,Biological Transport ,COPI ,Molecular biology ,Virus-Cell Interactions ,3. Good health ,[SDV] Life Sciences [q-bio] ,Amino Acid Substitution ,Membrane protein ,Cytoplasm ,Insect Science ,CD4 Antigens ,Mutation ,HIV-1 ,HeLa Cells ,Protein Binding - Abstract
The Nef protein from the human immunodeficiency virus (HIV) induces CD4 cell surface downregulation by interfering with the endocytic machinery. It has been recently proposed that binding of HIV type 1 Nef to the β subunit of COPI coatomers participated in the Nef-induced CD4 downregulation through recognition of a novel diacidic motif found in the C-terminal disordered loop of Nef (V. Piguet, F. Gu, M. Foti, N. Demaurex, J. Gruenberg, J. L. Carpentier, and D. Trono, Cell 97:63–73, 1999). We have mutated the glutamate residues which formed this motif in order to document this observation. Surprisingly, mutation of the diacidic sequence of Nef did not significantly affect its ability (i) to interact with β-COP, (ii) to downregulate CD4 cell surface expression, and (iii) to address an integral resident membrane protein containing Nef as the cytoplasmic domain to the endocytic pathway. Our results indicate that these acidic residues are not involved in the connection of Nef with the endocytic machinery through binding to β-COP. Additional studies are thus required to characterize the residues of Nef involved in the binding to β-COP and to evaluate the contribution of this interaction to the Nef-induced perturbations of membrane trafficking.
- Published
- 2001
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27. Alteration of HIV epitope processing and presentation by HIV protease inhibitors
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Mariko Shimada, Julie Boucau, Georgio Kourjian, S Le Gall, and Nicole Y. Lai
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lcsh:Immunologic diseases. Allergy ,Protease ,medicine.medical_treatment ,virus diseases ,Biology ,Major histocompatibility complex ,Virology ,Epitope ,Infectious Diseases ,Nelfinavir ,Indinavir ,Poster Presentation ,medicine ,biology.protein ,HIV Protease Inhibitor ,Ritonavir ,lcsh:RC581-607 ,Saquinavir ,medicine.drug - Abstract
Background Epitopes displayed by MHC-I come from the multistep degradation of proteins by intracellular peptidases such as proteasome and aminopeptidases or cathepsins in the exogenous pathway. We hypothesize that due to structural homologies HIV protease inhibitors (PIs) used in antiretroviral therapies may affect activities of cellular peptidases involved in epitope processing and may affect epitope presentation to immune cells. Methods Using a fluorogenic assay the effect of 5 HIV-1 PIs (Ritonavir, Saquinavir, Nelfinavir, Indinavir, Atazanavir) on proteasome, aminopeptidase and cathepsin activities was tested in PBMCs from at least 6 healthy donors. Using PBMC cytosol as a source of peptidases and HPLC and mass spectrometry to define and quantify the degradation products, the effect of HIV PIs on HIV peptide processing kinetics and HIV epitope half-life was assessed. Finally we assessed the impact of PIs on the endogenous processing and presentation of epitopes by infected cells to CD8 T cells using a fluorescence-based cytotoxicity assay. Results HIV PIs variably altered proteasome, post-proteasomal aminopeptidases and cathepsin activities. Depending on the PI, some activities were inhibited (from 1.1 to 5 folds, p
- Published
- 2012
28. [Renin-angiotensin system of the uterus and ovary in mammalian females]
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S, Le Gall, C, Féral, and P, Leymarie
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Mammals ,Ovulation ,Renin-Angiotensin System ,Ovarian Follicle ,Pregnancy ,Ovary ,Uterus ,Animals ,Female - Abstract
The circulating reninangiotensin system (RAS) participates in the regulation of blood pressure and electrolyte metabolism. Renin, a proteolytic enzyme, synthesized in the kidney from its biological precursor, prorenin, cleaves its substrate angiotensinogen in the blood to form the active octapeptide, angiotensin II (AII). All the RAS components are present in the reproductive system of mammals. During pregnancy, the level of prorenin increases in the plasma. The ovary is the source of this prorenin during early pregnancy and maternal decidua later on. During the menstrual cycle, the thecal of preovulatory follicles synthesize prorenin, renin and AII. Thecal renin synthesis is controlled by LH/hCG as demonstrated in vivo and in vitro in the rabbit. Ovarian renin seems to be identical to kidney renin. Prorenin appears to be the major secretory product rather than renin, which remains intracellular. AT2-type angiotensin II-receptors are expressed in the rat on follicular granulosa cells and could be down-regulated by FSH. The bovine thecal cells also express AT2-receptors, up-regulated by LH. These data are consistent with an autrocrine or paracrine role for ovarian RAS. It has been implicated in neovascularization of the follicle and regulation of steroidogenesis by increasing the androgen/estrogen ratio, an index of follicular atresia.
- Published
- 1993
29. P09-10. Impact of CTL escape mutations in HIV-1 Nef on viral replication
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Michael Kemper, Hendrik Streeck, Zabrina L. Brumme, Marcus Altfeld, Cesar Oniangue-Ndza, Arne Schneidewind, S Le Gall, Karen A. Power, Chanson J. Brumme, Adrianne D. Gladden, Bruce D. Walker, Mark A. Brockman, David Heckerman, Todd M. Allen, Galit Alter, Christian L. Boutwell, and Ye Wang
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lcsh:Immunologic diseases. Allergy ,biology ,business.industry ,viruses ,T cell ,Human immunodeficiency virus (HIV) ,virus diseases ,Immune control ,medicine.disease_cause ,Virology ,CTL ,Infectious Diseases ,medicine.anatomical_structure ,Viral replication ,Poster Presentation ,biology.protein ,Viral fitness ,Medicine ,Antibody ,business ,lcsh:RC581-607 ,CD8 - Abstract
Background HIV-1 Nef is a multifunctional protein frequently targeted by host CD8+ T cell responses in early and chronic phases of HIV-1 infection. In vivo reversions of CTL escape mutations within Nef have been reported, suggesting a possible impact of immune-selected mutations in Nef on viral fitness. The goal of this work was to determine whether CD8+ T cell selected mutations in regions outside of Gag, such as in Nef, also impair viral replication and may thus contribute to early immune control of HIV-1.
- Published
- 2009
30. Macrophage colony-stimulating factor: serum levels and cDNA structure in malignant osteopetrosis [letter]
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K. Motoyoshi, Olivier Danos, S. Le Gall, E. Vilmer, G. Cournot, Jean Michel Heard, and Nadia Naffakh
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Macrophage colony-stimulating factor ,Immunology ,RNA ,Osteopetrosis ,Cell Biology ,Hematology ,Transfection ,Biology ,medicine.disease ,Biochemistry ,Molecular biology ,Serine ,Exon ,Complementary DNA ,medicine ,Peptide sequence - Published
- 1993
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31. Stratégies d'échappement au système immunitaire du VIH
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S Le Gall and Philippe Benaroch
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Human immunodeficiency virus (HIV) ,medicine ,General Medicine ,Biology ,medicine.disease_cause ,Molecular biology ,General Biochemistry, Genetics and Molecular Biology ,Virus - Abstract
Les virus sont des ennemis des systemes immunitaires dans une guerre tres ancienne faite d'adaptations constantes aux armes et aux strategies de l'adversaire. Pour echapper a la detection et a la destruction par leur hote, les virus ont mis en place des mecanismes varies. Leur comprehension accroit nos connaissances sur les fonctionnements des systemes immunitaires et des virus. Les strategies mises en oeuvre par le virus de l'immunodeficience humaine (VIH) concernent notamment un processus-cle de la reponse immunitaire qui est la presentation antigenique par les molecules du complexe majeur d'histocompatibilite (CMH) aux lymphocytes T. Les cellules dendritiques sont des cellules specialisees dans la presentation antigenique possedant la propriete de mettre en route des reponses immunitaires. Dans l'infection par le VIH, les cellules dendritiques sont essentielles au virus pour sa penetration dans l'organisme, pour sa production et sa dissemination et, probablement, dans la pathogenie du SIDA.
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- 1999
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32. Detection of Cancer Stem Cells from Patient Samples.
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Hakala, Sofia, Hämäläinen, Anna, Sandelin, Sanne, Giannareas, Nikolaos, and Närvä, Elisa
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CELL populations ,RNA sequencing ,DISEASE progression ,TRANSCRIPTOMES ,UNITS of measurement ,CANCER stem cells - Abstract
The existence of cancer stem cells (CSCs) in various tumors has become increasingly clear in addition to their prominent role in therapy resistance, metastasis, and recurrence. For early diagnosis, disease progression monitoring, and targeting, there is a high demand for clinical-grade methods for quantitative measurement of CSCs from patient samples. Despite years of active research, standard measurement of CSCs has not yet reached clinical settings, especially in the case of solid tumors. This is because detecting this plastic heterogeneous population of cells is not straightforward. This review summarizes various techniques, highlighting their benefits and limitations in detecting CSCs from patient samples. In addition, methods designed to detect CSCs based on secreted and niche-associated signaling factors are reviewed. Spatial and single-cell methods for analyzing patient tumor tissues and noninvasive techniques such as liquid biopsy and in vivo imaging are discussed. Additionally, methods recently established in laboratories, preclinical studies, and clinical assays are covered. Finally, we discuss the characteristics of an ideal method as we look toward the future. [ABSTRACT FROM AUTHOR]
- Published
- 2025
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33. Effect of DLPFC rTMS on anhedonia and alpha asymmetry in depressed patients.
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Kazemi, Reza, Rostami, Reza, Hadipour, Abed L., Zandbagleh, Ahmad, Khomami, Sanaz, Kiaee, Nasim, Coetzee, John P., Philips, Angela, and Mausoof Adamson, Maheen
- Abstract
Anhedonia, a core symptom of depression, has been defined as the loss of pleasure or lack of reactivity to pleasurable stimuli. Considering the relevance of alpha asymmetry to MDD and anhedonia, we explored the effect of dorsolateral prefrontal cortex (DLPFC) stimulation on frontal and posterior EEG alpha asymmetry (FAA and PAA, respectively), in this exploratory investigation. 61 participants randomly received sham (n = 11), bilateral (BS; n = 25), or unilateral stimulation (US; n = 25) of the DLPFC. The Snaith-Hamilton Pleasure Scale (SHAPS) was administered. FAA and PAA were calculated by subtracting the natural log-transformed alpha power of the right (F8 or T6) from that of the left (F7 or T5) EEG channel. Furthermore, alpha peak was defined as the frequency where alpha power was at its maximum. BS and US both reduced anhedonia symptoms in the active compared to the sham group. Even non-responders in the BS group showed a decreased anhedonia. Interestingly in the BS group, only the patients who showed a right-lateralized FAA or PAA at baseline showed a reduction in anhedonia. However, in the US group, only patients with left-lateralized FAA or right-lateralized PAA showed a decrease in anhedonia. PAA at baseline predicted symptoms post treatment. Furthermore, a significant positive correlation between baseline alpha peak values and SHAPS scores post treatment were found in the BS group. PAA was a better predictor of anhedonia and reduction of depressive symptoms in both groups. BS may produce larger effects with regard to anhedonia. [ABSTRACT FROM AUTHOR]
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- 2025
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34. Single chain fragment variable, a new theranostic approach for cardiovascular diseases.
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Zahid, Rukhshan, Wang, Juncheng, Cai, Zecheng, Ishtiaq, Ayesha, Liu, Meng, Ma, Dan, Liang, Yan, and Xu, Yuekang
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IMMUNOTECHNOLOGY ,MOLECULAR biology ,CARDIOVASCULAR diseases ,IMMUNE response ,WORLD health - Abstract
Cardiovascular diseases (CVDs) remain a significant global health challenge, leading to substantial morbidity and mortality. Despite recent advancements in CVD management, pharmaceutical treatments often suffer from poor pharmacokinetics and high toxicity. With the rapid progress of modern molecular biology and immunology, however, single-chain fragment variable (scFv) molecule engineering has emerged as a promising theranostic tool to offer specificity and versatility in targeting CVD-related antigens. To represent the latest development on the potential of scFv in the context of CVDs, this review summarized the new mechanism of action and applications as therapeutic, as well as diagnostic agents. Furthermore, the advantages of scFv, including its small size, ease of modification, and ability to be engineered for enhanced affinity and specificity, are also described. Finally, such challenges as immunogenicity, stability, and scalability, alongside strategies to overcome these hurdles, are deeply scrutinized to provide safer and more effective strategies for the diagnosis and treatment of the incurable CVDs. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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35. Culture-Based Standard Methods for the Isolation of Campylobacter spp. in Food and Water.
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Neyaz, Leena A., Arafa, Sara H., Alsulami, Fatimah S., Ashi, Hayat, Elbanna, Khaled, and Abulreesh, Hussein H.
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INTESTINAL infections ,POULTRY products ,FOOD poisoning ,ANIMAL handling ,FOOD chemistry - Abstract
Campylobacter spp. is a major source of global gastrointestinal infections. Their enteric infections are linked to the consumption of undercooked poultry products, contaminated milk and water, and the handling of wild animals and birds. The detection of Campylobacter spp. in water and food samples mainly depends on culture-based techniques. Public Health England (PHE), the U.S. Food and Drug Administration (FDA), and the International Standard Organization (ISO) have standardized Campylobacter spp. isolation and enumeration procedures for food and water samples, which involve the usage of selective agar media and enrichment broth. Different types of selective plating and enrichment media have been prepared for Campylobacter spp. detection and assessment during regular food surveillance and food poisoning. To date, culture media remains the standard option for microbiological food analysis and has been approved by the U.S. Environmental Protection Agency (US EPA), Food and Agriculture Organization (FAO), and World Health Organization (WHO). This review discusses the standard microbiological protocols for Campylobacter spp. isolation and enumeration in food and water and evaluates detection media (pre-enrichment, selective enrichment, and selective plating) for their rational applications. Moreover, it also elaborates on the advantages and disadvantages of recent chromogenic culture media in Campylobacter spp.-oriented food surveillance. This review also highlights the challenges of culture-based techniques, future developments, and alternative methods for Campylobacter spp. detection in food and water samples. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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36. Geography, Antimicrobial Resistance, and Genomics of Salmonella enterica (Serotypes Newport and Anatum) from Meat in Mexico (2021–2023).
- Author
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Reynoso, Eduardo Canek, Delgado-Suárez, Enrique Jesús, Hernández-Pérez, Cindy Fabiola, Chavarin-Pineda, Yaselda, Godoy-Lozano, Elizabeth Ernestina, Fierros-Zárate, Geny, Aguilar-Vera, Omar Alejandro, Castillo-Ramírez, Santiago, Gómez-Pedroso, Luz del Carmen Sierra, and Sánchez-Zamorano, Luisa María
- Subjects
SALMONELLA enterica ,FOODBORNE diseases ,DRUG resistance in microorganisms ,PAN-genome ,WATCHFUL waiting ,COMPARATIVE genomics - Abstract
Salmonella enterica non-typhoidal is a major contributor to diarrheal diseases, with over 2600 serovars identified across diverse environments. In Mexico, serovars Newport and Anatum have shown a marked increase, especially in foodborne disease, posing a public health problem. We conducted a cross-sectional study from 2021 to 2023 using active epidemiological surveillance to assess contamination in ground beef and pork at butcher shops nationwide. It involved isolation, phenotypic antimicrobial resistance, comparative genomics, spatial distribution, antimicrobial-resistance genes, and pangenome analysis. A total of 402 non-typhoidal S. enterica strains were isolated, including 59 Newport and 50 Anatum. After curating for redundancy, 45 Newport and 32 Anatum strains remained. We found that 75% of Newport strains exhibited multidrug resistance (MDR), compared to 25% of Anatum strains. Salmonella Newport also showed a broader distribution and stronger antibiotic-resistance capacity, particularly due to genes such as mphA and ramA. Our pangenome analysis showed a predominance of cell maintenance and survival-process genes in the accessory genome of both serotypes. Considering unique genes, Salmonella Anatum and Newport showed a notorious abundance of genes with functions related to replication, recombination, and repair. The substantial rise of Anatum and Newport strains in meat samples for human consumption presents an epidemiological alert, highlighting the critical need for stringent surveillance programs to mitigate human and ecosystem health risks. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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37. Coinfection and nonrandom recombination drive the evolution of swine enteric coronaviruses.
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Jiahui Guo, Yinan Lai, Zhixiang Yang, Wenbo Song, Junwei Zhou, Zhuang Li, Wen Su, Shaobo Xiao, and Liurong Fang
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- 2024
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38. Revolutionizing Epithelial Differentiability Analysis in Small Airway-on-a-Chip Models Using Label-Free Imaging and Computational Techniques.
- Author
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Chen, Shiue-Luen, Xie, Ren-Hao, Chen, Chong-You, Yang, Jia-Wei, Hsieh, Kuan-Yu, Liu, Xin-Yi, Xin, Jia-Yi, Kung, Ching-Kai, Chung, Johnson H. Y., and Chen, Guan-Yu
- Subjects
ORGANS (Anatomy) ,MUCOCILIARY system ,IMAGE recognition (Computer vision) ,CELL imaging ,IMAGE analysis ,DEEP learning - Abstract
Organ-on-a-chip (OOC) devices mimic human organs, which can be used for many different applications, including drug development, environmental toxicology, disease models, and physiological assessment. Image data acquisition and analysis from these chips are crucial for advancing research in the field. In this study, we propose a label-free morphology imaging platform compatible with the small airway-on-a-chip system. By integrating deep learning and image recognition techniques, we aim to analyze the differentiability of human small airway epithelial cells (HSAECs). Utilizing cell imaging on day 3 of culture, our approach accurately predicts the differentiability of HSAECs after 4 weeks of incubation. This breakthrough significantly enhances the efficiency and stability of establishing small airway-on-a-chip models. To further enhance our analysis capabilities, we have developed a customized MATLAB program capable of automatically processing ciliated cell beating images and calculating the beating frequency. This program enables continuous monitoring of ciliary beating activity. Additionally, we have introduced an automated fluorescent particle tracking system to evaluate the integrity of mucociliary clearance and validate the accuracy of our deep learning predictions. The integration of deep learning, label-free imaging, and advanced image analysis techniques represents a significant advancement in the fields of drug testing and physiological assessment. This innovative approach offers unprecedented insights into the functioning of the small airway epithelium, empowering researchers with a powerful tool to study respiratory physiology and develop targeted interventions. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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39. Can Sustainable Food from Edible Insects Become the Food of the Future? Exploring Poland's Generation Z.
- Author
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Mikulec, Anna, Platta, Anna, Radzymińska, Monika, Garbowska, Bożena, Suwała, Grzegorz, Ruszkowska, Millena, Kowalczewski, Przemysław Łukasz, and Kowalski, Stanisław
- Abstract
This study addresses a research gap by examining the attitudes and interest of young Polish consumers in new foods containing insects. The results of the survey, which are presented in this article, were obtained as part of an inter-university project conducted at five Polish higher education institutions (N = 1063). The survey was conducted using the indirect interview method via an online platform (CAWI). This study aimed to assess attitudes, behaviours and intentions to purchasing insect foods, as well as factors influencing the selection of new foods containing insects and product preferences for such foods. The analysis revealed no statistically significant differentiation in consumer behaviour and declared intentions towards insect foods based on gender or place of residence (p > 0.001). Our results revealed correlations between the level of neophobia and negative attitudes among young consumers towards insect products, albeit weak in nature. The exploratory factor analysis suggested that the assessment of factors influencing the purchase of insect products may be based on a small number of dimensions, which were not found to be correlated, as follows: "Health and Environmental Concern", "Organoleptic Attributes" and "Circumstantial Influences". [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
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40. Effect of Mussel Meal Feed Supplement on Growth, Health Status, Proximate Composition and Fatty Acid Profile of Gilthead Seabream (Sparus aurata).
- Author
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Privileggio, Luca, Grozić, Kristina, Maurić Maljković, Maja, Pavičić-Hamer, Dijana, Janči, Tibor, Relić, Marko, Barić, Renata, and Hamer, Bojan
- Subjects
SPARUS aurata ,MONOUNSATURATED fatty acids ,UNSATURATED fatty acids ,SUNFLOWER seed oil ,BINDING agents - Abstract
To evaluate the effects of mussel meal, as a sustainable ingredient for fish feed, on the growth, health status, proximate composition, and fatty acid profile of gilthead seabream, mussel meal was included in commercial feed formulations. Sunflower oil (2%) was used as a binding agent. Four groups of gilthead seabream were fed either with control feed (commercial feed, commercial feed and sunflower oil) or mussel-meal-supplemented formulations (commercial feed, sunflower oil, and 2.5 or 5% mussel meal) for six weeks. In this experiment, a total of 180 specimens of gilthead seabream juveniles were included. The initial weight and length of the gilthead seabream specimens were, on average, 13.04 g and 9.57 cm, respectively. The average temperature of the seawater ranged between 25 and 26 °C during the experiment. The results of this study indicated a higher relative weight gain and a slightly lower feed conversion ratio in the control group fed with commercial feed, probably because of macronutrient imbalances introduced by the addition of mussel meal and sunflower oil. The groups fed with mussel-supplemented diets had a slightly lower crude protein content compared to the group fed with a commercial diet. The addition of sunflower oil and mussel meal decreased the saturated fatty acid content while increasing the monounsaturated and polyunsaturated fatty acid content compared to the control group. However, the high content of DHA and EPA in the mussel meal resulted in a proportional increase of these fatty acids in the muscle tissue of gilthead seabream, although the overall effect was not statistically significant. The findings of this study suggest that mussel meal is a promising source of protein and lipids for sustainable fish feed production, but under the experimental setup, mussel meal did not act as an attractant for increasing fish feed intake during the summer conditions. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
41. Early-life antibiotic exposure aggravate the metabolic dysfunction-associated steatotic liver disease associated hepatocellular carcinoma.
- Author
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Tian, Panpan, Tian, Xinyu, Gao, Lifen, Ma, Chunhong, and Liang, Xiaohong
- Subjects
LIQUID chromatography-mass spectrometry ,KILLER cells ,GUT microbiome ,ALANINE aminotransferase ,LIVER cells - Abstract
Background: Metabolic dysfunction-associated steatotic liver disease (MASLD) asscociated hepatocellular carcinoma (HCC) is becoming a growing concern in global healthcare. The early-life gut microbiota plays a crucial role in maintaining healthy. However, the impact of early-life gut microbiota dysbiosis on the advancement of MASLD-HCC remains inadequately understood. Methods: In the present study, we investigated the role of early-life gut microbiota in the development of MASLD-HCC in streptozotocin and high-fat diet (STZ-HFD) induced mouse model. We recorded the body weight and lifespan, and dynamically monitored the level of alanine aminotransferase (ALT), aspartate aminotransferase (AST), triglyceride (TG), total cholesterol (T-CHO) and blood glucose in the serum monthly. In addition, we examined various immune cells present in the liver, such as T cells, B cells, NK cells, NKT cells, αβT cells, γδT cells, macrophage and MDSC cells by flow cytometry and conducted liquid chromatography mass spectrometry (LC–MS) based analysis on liver tissue from control and early-life antibiotic exposure mice (early-Abx) MASLD-HCC mice. Results: We found that early-Abx mice suffered from more severe tumor burden and further confirmed that hepatocytes and immune cells were all disturbed. Importantly, early-life antibiotic exposure alters the liver metabolic profiling especially glycerophospholipids and lipid accumulation. Furthermore, mice exposed to antibiotics in early-life showed disturbances in glucose metabolism and developed insulin resistance. Conclusions: Collectively, our findings revealed that early-life antibiotic exposure accelerated the progression of MASLD-HCC by impairing the hepatocytes, immune homeostasis and metabolites persistently, highlighting the importance of the early-life microbiota in the development of MASLD-HCC. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
42. Seaweed Nutritional Value and Bioactive Properties: Insights from Ascophyllum nodosum , Palmaria palmata , and Chondrus crispus.
- Author
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Čmiková, Natália, Kowalczewski, Przemysław Łukasz, Kmiecik, Dominik, Tomczak, Aneta, Drożdżyńska, Agnieszka, Ślachciński, Mariusz, Szala, Łukasz, Matić, Sanja, Marković, Tijana, Popović, Suzana, Baskic, Dejan, and Kačániová, Miroslava
- Subjects
AMINO acid analysis ,UNSATURATED fatty acids ,ASCOPHYLLUM nodosum ,ESSENTIAL amino acids ,GLUTAMIC acid - Abstract
This study investigates the nutritional composition and bioactive properties of Palmaria palmata (dulse), Ascophyllum nodosum (knotted wrack), and Chondrus crispus (Irish moss). Understanding the nutritional values of these seaweeds is very important due to their potential health benefits, especially their antioxidant properties and cytotoxic activities, which point to their ability to inhibit cancer cell proliferation. Comprehensive analyses were conducted to assess protein content, amino acid composition, mineral profile, fatty acids, polyphenols, total carotenoids, antioxidant activity, and cytotoxicity against cervical (HeLa), and colon (HCT-116) cell lines. P. palmata exhibited the highest protein content, while C. crispus was richest in calcium, iron, manganese, and zinc. Amino acid analysis revealed C. crispus as being particularly high in essential and non-essential amino acids, including alanine, glutamic acid, and glycine. A. nodosum and C. crispus were rich in polyunsaturated fatty acids (PUFAs), notably eicosapentaenoic acid (EPA), and docosahexaenoic acid (DHA). A. nodosum showed the highest total carotenoid content. Polyphenol analysis highlighted the presence of compounds such as p-coumaric acid, gallic acid, and p-hydroxybenzoic acid across the species. Both the ethanolic and hexane A. nodosum extracts demonstrated the strongest antioxidant potential in DPPH
• and ABTS+ assays. The cytotoxicity evaluation revealed high anticancer activity of A. nodosum and C. crispus hexane extract against HeLa and HCT-116, though it employed cell cycle arrest and apoptosis. A. nodosum hexane extract exhibited moderate selective anticancer activity against HCT-116. These findings underscore the nutritional diversity and potential health benefits of these macroalgae (seaweed) species, suggesting their suitability as functional foods or supplements, offering diverse nutritional and therapeutic benefits. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
43. Integrating Molecular Perspectives: Strategies for Comprehensive Multi-Omics Integrative Data Analysis and Machine Learning Applications in Transcriptomics, Proteomics, and Metabolomics.
- Author
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Sanches, Pedro H. Godoy, de Melo, Nicolly Clemente, Porcari, Andreia M., and de Carvalho, Lucas Miguel
- Subjects
BIOLOGICAL systems ,MULTIOMICS ,TRANSCRIPTOMES ,RESEARCH personnel ,PROTEOMICS ,METABOLOMICS ,MACHINE learning - Abstract
Simple Summary: Recent high-throughput technologies such as transcriptomics, proteomics, and metabolomics have allowed progress in understanding biological systems at different levels of detail. Even so, it is necessary to integrate multiple omics data sets to achieve a comprehensive understanding of the subject under study. In this article, we review the methods used for integrating transcriptomics, proteomics, and metabolomics data and summarize them in three approaches: combined omics integration, correlation-based integration strategies, and machine learning integrative approaches. Our goal is to showcase the uses and limitations of each approach, allowing researchers to choose the more appropriate tool for each scenario to extract a comprehensive view of a biological system. With the advent of high-throughput technologies, the field of omics has made significant strides in characterizing biological systems at various levels of complexity. Transcriptomics, proteomics, and metabolomics are the three most widely used omics technologies, each providing unique insights into different layers of a biological system. However, analyzing each omics data set separately may not provide a comprehensive understanding of the subject under study. Therefore, integrating multi-omics data has become increasingly important in bioinformatics research. In this article, we review strategies for integrating transcriptomics, proteomics, and metabolomics data, including co-expression analysis, metabolite–gene networks, constraint-based models, pathway enrichment analysis, and interactome analysis. We discuss combined omics integration approaches, correlation-based strategies, and machine learning techniques that utilize one or more types of omics data. By presenting these methods, we aim to provide researchers with a better understanding of how to integrate omics data to gain a more comprehensive view of a biological system, facilitating the identification of complex patterns and interactions that might be missed by single-omics analyses. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
44. Active Full‐Color Generation Based on a Liquid Crystal‐Integrated Plasmonic Metasurface.
- Author
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Huo, Dewang and Li, Guoqiang
- Subjects
STRUCTURAL colors ,BREWSTER'S angle ,LIQUID crystals ,REFRACTIVE index ,OPTICS - Abstract
Structural colors based on metasurfaces outperform traditional pigments and dyes in terms of nonfading, high spatial resolution, and high stability, usually incorporating active materials for tunability. Liquid crystals (LCs) are suitable for tunable structural color design due to their large birefringence and fast modulation by external stimuli. However, most LC‐integrated structural colors focus on tailoring the polarization angle of incident light to generate two colors and their mixing. Herein, a scheme of full‐color generation based on a plasmonic metasurface integrated with LCs utilizing the combination of the polarization angle rotation effect of the twisted‐nematic LCs and the refractive index modulation through the realignment of the LCs near the metasurface is demonstrated. Based on the proposed structural color method, full‐color generation of a record color gamut of 60.7% standard Red Green Blue region, equivalent to 43% National Television Standards Committee area, in the LC‐integrated metasurface, has been numerically realized by tuning the bias voltage of the LCs in reflection. The achieved color gamut is nearly 4 times wider than the previously reported result. The proposed active full‐color generation metasurface shows great potential in applications for low‐power reflective color display, anticounterfeiting, and optical encoding. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
45. Edible Insects: Consumption, Perceptions, Culture and Tradition Among Adult Citizens from 14 Countries.
- Author
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Guiné, Raquel P. F., Florença, Sofia G., Costa, Cristina A., Correia, Paula M. R., Cruz-Lopes, Luísa, Esteves, Bruno, Ferreira, Manuela, Fragata, Anabela, Cardoso, Ana P., Campos, Sofia, Anjos, Ofélia, Boustani, Nada M., Bartkiene, Elena, Chuck-Hernández, Cristina, Djekic, Ilija, Tarcea, Monica, Sarić, Marijana Matek, Kruma, Zanda, Korzeniowska, Malgorzata, and Papageorgiou, Maria
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EDIBLE insects ,FOOD shortages ,INSECT food ,FACTOR analysis ,CHI-squared test - Abstract
Although edible insects (EIs) are encouraged as a sustainable source of protein, their consumption is not as generalised as other types of food that are internationally accepted. While in some regions of the world, EIs are part of the gastronomic and cultural traditions, in other regions, people are not so receptive to this type of food, and some people even express some disgust towards it. Hence, this research focused on the habits of the participants regarding the consumption of insects as well as their perceptions about EIs being or not a part of the local culture or gastronomic patrimony. A questionnaire survey was implemented in fourteen countries (Brazil, Croatia, Greece, Latvia, Lebanon, Lithuania, Mexico, Poland, Portugal, Romania, Serbia, Slovenia, Spain, and Turkey), and globally, 7222 adult participants responded to the questionnaire. SPSS software (version 28) was used to process the data and carry out chi-square tests and Factor Analyses (FA). The obtained results showed significant differences between countries for all the questions included in the survey, either those regarding the habits of the participants or their opinions about the facts linked with EI tradition or cultural aspects. It was found that participants from Mexico consume EIs more than in all other countries and that strong motivations that would lead to consumption among those who do not consume include curiosity and food shortage. The solution obtained with FA considering the ten statements of the scale consisted of two factors: F1—Culture and Tradition of EIs (α = 0.675) and F2—Acceptance of EIs (α = 0.614). In conclusion, the consumption of EIs and the perceptions of people are highly variable according to geographic location and cultural environment. [ABSTRACT FROM AUTHOR]
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- 2024
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46. Comparative Analysis of Quantitative Methods for Campylobacter spp. Quantification: ISO 10272-2:2017, Tempo ® and Real-Time PCR in Refrigerated and Frozen Turkey Cuts.
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Führ, Carlos Alberto, Giombelli, Audecir, Cerutti, Marisete Fochesatto, Bergmann, Guiomar Pedro, and Kindlein, Liris
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MICROBIOLOGICAL assay ,CAMPYLOBACTER ,QUANTITATIVE research ,FOOD industry ,COMPARATIVE studies - Abstract
New technologies for more effective microbiological assays are being adopted by the food industry to intervene more rapidly in its production chain. The aim of this study was to evaluate the alternative methods of TEMPO
® CAM and real-time PCR (rtPCR) Biotecon® in comparison with the ISO 10272-2:2017 reference method for Campylobacter spp. quantification in turkey meat, aiming to validate a quick and easily replicable method in these meat matrices. A total of 416 samples were analyzed over a one-year period. The TEMPO® methodology showed inadequate performance with a significant difference (p < 0.05) compared with the reference methodology; therefore, its use was not recommended for turkey meat matrices. However, the performance of the rtPCR Biotecon® methodology showed adequate performance with no significant difference (p > 0.05), and its use was recommended in turkey meat matrices. The study was limited to exclusive research in turkey meat matrices, and expansion of the research into other matrices is recommended to verify whether the behavior of alternative methodologies is similar. The findings of this study illustrate the necessity for a thorough and comprehensive evaluation during the implementation of alternative methodologies that may potentially supplant conventional approaches. [ABSTRACT FROM AUTHOR]- Published
- 2024
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47. HIV-related perceived stigma and internalized stigma among people living with HIV/AIDS in Africa: A systematic review and meta-analysis.
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Tadesse, Gebresilassie, Rtbey, Gidey, Andualem, Fantahun, Takelle, Girmaw Medfu, Melkam, Mamaru, Tadesse Abate, Asnake, Wassie, Yilkal Abebaw, Tekleslassie Alemayehu, Tekletsadik, Geremew, Gebremariam Wulie, Dires, Eshetie Andargie, Tinsae, Techilo, Fentahun, Setegn, and Nakie, Girum
- Subjects
HIV-positive persons ,RURAL women ,QUALITY of life ,CINAHL database ,PSYCHOLOGICAL distress ,ELECTRONIC spreadsheets - Abstract
Background: HIV-related stigma has significant adverse impacts on people living with HIV/AIDS, such as psychological distress, decreased quality of life, a reluctance to get screened and treated, and a reluctance to disclose their status due to fear of stereotypes or rejection. Objectives: To determine the pooled prevalence and factors associated with HIV-related perceived stigma and internalized stigma among people living with HIV/AIDS in Africa. Methods: Articles that assessed the prevalence and associated factors of HIV-related perceived stigma and internalized stigma were reviewed. PubMed, EMBASE, Google Scholar, African Journal Online, CINAHL, and Science Direct were the databases used to search the primary studies. The data was extracted through a Microsoft Excel spreadsheet and exported to STATA version 14 for further analysis. The I
2 test was applied to test heterogeneity, whereas Egger's test and funnel plot were used to check publication bias. Results: In this study, the total sample size was 28,355 (for perceived stigma) and 22,732 (for internalized stigma). The overall pooled prevalence of HIV-related perceived stigma and internalized stigma was determined to be 41.23% and 35.68%, respectively. Based on the subgroup analysis results, the highest pooled prevalence of perceived stigma was observed in Nigeria (50.04%), followed by Ethiopia (41.72%), while the highest prevalence of internalized stigma was observed in Ethiopia (56.13%), followed by Cameroon (44.66%). Females (OR = 1.63: 1.31, 2.02) and rural dwellers (OR = 1.93: 1.36, 2.74) had more odds of experiencing HIV-related perceived stigma. Conclusion and recommendation: This study concluded that four in ten and more than one-third of people living with HIV/AIDS suffered from perceived and internalized stigma. Thus, special considerations must be given to women and rural dwellers. It is recommended to implement multi-level interventions and foster empowerment and support for individuals living with HIV. [ABSTRACT FROM AUTHOR]- Published
- 2024
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48. Differential Selection for Survival and for Growth in Adaptive Laboratory Evolution Experiments With Benzalkonium Chloride.
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Schmidt, Selina B. I., Täschner, Tom, Nordholt, Niclas, and Schreiber, Frank
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BIOLOGICAL evolution ,ESCHERICHIA coli ,WHOLE genome sequencing ,BENZALKONIUM chloride ,POLLUTION - Abstract
Biocides are used to control microorganisms across different applications, but emerging resistance may pose risks for those applications. Resistance to biocides has commonly been studied using adaptive laboratory evolution (ALE) experiments with growth at subinhibitory concentrations linked to serial subculturing. It has been shown recently that Escherichia coli adapts to repeated lethal stress imposed by the biocide benzalkonium chloride (BAC) by increased survival (i.e., tolerance) and not by evolving the ability to grow at increased concentrations (i.e., resistance). Here, we investigate the contributions of evolution for tolerance as opposed to resistance for the outcome of ALE experiments with E. coli exposed to BAC. We find that BAC concentrations close to the half maximal effective concentration (EC50, 4.36 μg mL−1) show initial killing (~40%) before the population resumes growth. This indicates that cells face a two‐fold selection pressure: for increased survival and for increased growth. To disentangle the effects of both selection pressures, we conducted two ALE experiments: (i) one with initial killing and continued stress close to the EC50 during growth and (ii) another with initial killing and no stress during growth. Phenotypic characterization of adapted populations showed that growth at higher BAC concentrations was only selected for when BAC was present during growth. Whole genome sequencing revealed distinct differences in mutated genes across treatments. Treatments selecting for survival‐only led to mutations in genes for metabolic regulation (cyaA) and cellular structure (flagella fliJ), while treatments selecting for growth and survival led to mutations in genes related to stress response (hslO and tufA). Our results demonstrate that serial subculture ALE experiments with an antimicrobial at subinhibitory concentrations can select for increased growth and survival. This finding has implications for the design of ALE experiments to assess resistance risks of antimicrobials in different scenarios such as disinfection, preservation, and environmental pollution. [ABSTRACT FROM AUTHOR]
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- 2024
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49. Managing a Salmonella Bredeney Outbreak on an Italian Dairy Farm.
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Torreggiani, Camilla, Paladini, Cosimo, Cannistrà, Marcello, Botti, Benedetta, Prosperi, Alice, Chiapponi, Chiara, Soliani, Laura, Mescoli, Ada, and Luppi, Andrea
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HEALTH of cattle ,ANIMAL herds ,SALMONELLA enterica ,DAIRY cattle ,DAIRY farms ,DAIRY farm management - Abstract
Simple Summary: Salmonella enterica subsp. enterica infections critically affect cattle health, producing high rates of morbidity and mortality in calves and reducing the performance of adult cows. Some European countries implemented surveillance and control programs decades ago, but in Italy, there is no national control program for dairy cows. This study describes an outbreak of Salmonella Bredeney in a dairy herd and the consequent control strategies applied. Control strategies included sample collection visits to the farm in order to identify the prevalence of Salmonella spp. and assess biosecurity levels. In this outbreak, there was a higher prevalence in calves and this condition was associated with poor biosecurity practices. Subsequently, the practitioner and farmer were provided with a health management plan to reduce the prevalence and control the outbreak. During the follow-up period, monitoring and testing revealed repeated negative results, indicating adequate control over the outbreak. The procedures undertaken in this project made it possible to collect useful data for the definition of measures for the management of outbreaks of salmonellosis in dairy cows. Salmonellosis in dairy cattle represents an increasing problem for both animal and public health. Nevertheless, in Italy, there is no control plan in place on dairy farms. The aim of this study was to describe a Salmonella Bredeney outbreak that occurred on a dairy farm and the measures that were adopted to control the outbreak. Management consisted in identifying the spread of infection and assessing the environmental contamination of Salmonella spp. and the associated risk factors. After the farm visit, laboratory investigations showed that 48% of rectal swabs collected from calves and 33% of environmental samples were positive for S. Bredeney, and a poor biosecurity level was detected. The farmer and practitioner were provided with a health management plan to control the spread of Salmonella spp., followed by a monitoring period and a follow-up visit in which all samples resulted negative. The results demonstrated the efficacy of indirect prophylaxis measures in reducing the circulation of Salmonella spp., leading to the extinction of the outbreak. Collaboration with farmers, practitioners, and public health veterinarians and the introduction of measures reported in the health management plan constitute a possible model for the management of Salmonella spp. outbreaks in dairy herds, even in complex farm situations. [ABSTRACT FROM AUTHOR]
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- 2024
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50. Detecting stochasticity in population time series using a non‐parametric test of intrinsic predictability.
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Şen, Bilgecan, Che‐Castaldo, Christian, Lynch, Heather J., Ventura, Francesco, LaRue, Michelle A., and Jenouvrier, Stéphanie
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WHITE noise theory ,TIME series analysis ,ENTROPY (Information theory) ,TIME complexity ,PREDICTION theory - Abstract
Many ecological systems dominated by stochastic dynamics can produce complex time series that inherently limit forecast accuracy. The 'intrinsic predictability' of these systems can be approximated by a time series complexity metric called weighted permutation entropy (WPE). While WPE is a useful metric to gauge forecast performance prior to model building, it is sensitive to noise and may be biased depending on the length of the time series. Here, we introduce a simple randomized permutation test (rWPE) to assess whether a time series is intrinsically more predictable than white noise.We apply rWPE to both simulated and empirical data to assess its performance and usefulness. To do this, we simulate population dynamics under various scenarios, including a linear trend, chaotic, periodic and equilibrium dynamics. We further test this approach with observed abundance time series for 932 species across four orders of animals from the Global Population Dynamics Database. Finally, using Adélie (Pygoscelis adeliae) and emperor penguin (Aptenodytes forsteri) time series as case studies, we demonstrate the application of rWPE to multiple populations for a single species.We show that rWPE can determine whether a system is significantly more predictable than white noise, even with time series as short as 10 years that show an apparent trend under biologically realistic stochasticity levels. Additionally, rWPE has statistical power close to 100% when time series are at least 30 time steps long and show chaotic or periodic dynamics. Power decreases to ~10% under equilibrium dynamics, irrespective of time series length. Among four classes of animal taxa, mammals have the highest relative frequency (28%) of time series that are both longer than 30 time steps and indistinguishable from white noise in terms of complexity, followed by insects (16%), birds (16%) and bony fishes (11%).rWPE is a straightforward and useful method widely applicable to any time series, including short ones. By informing forecasters of the inherent limitations to a system's predictability, it can guide a modeller's expectations for forecast performance. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
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