407 results on '"Holton M"'
Search Results
2. Messy natures: The political aesthetics of nature recovery.
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Wartmann, Flurina M. and Lorimer, Jamie
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NATURE (Aesthetics) ,HUMAN ecology ,AESTHETIC experience ,ENVIRONMENTAL justice ,ENVIRONMENTAL degradation ,IDEOLOGY - Abstract
Current aspirations for nature recovery to address biodiversity loss and climate change will involve changing what landscapes look like, which can create challenging aesthetic experiences for members of the public.In this study, we interrogate the role of aesthetics in shaping visions of nature recovery, focussing on the construction and contestation of 'mess' and 'messiness' in nature recovery.We examine the political aesthetics of messy natures using a qualitative approach investigating visual and text materials across different sites of production in Britain, from newspapers to social media, paying particular attention to visual materialsOur results show how the mediated debate around 'rewilding' urban environments and a beaver‐themed garden winning a horticultural show are examples of a backlash against untidy environments through a politicised discourse, linking messy nature with left‐wing ideologies, in contrast to the perceived orderliness and conservative ideals of good citizenship associated with tidiness.In contrast, social media imagery of messy and wild gardens demonstrates how mess is consciously framed aesthetically as a desirable 'look' for restored nature, symbolising progressive and environmentalist ideals of good citizenship through activities such as nature‐friendly gardening and initiatives such as 'No Mow May', which celebrate the aesthetic of a more biodiverse messiness.And finally, we traced how environmental advocacy organisations are prefiguring the future of nature recovery in Britain through commissioned graphical representations that portray a 'tamed messiness' and the return of charismatic megafauna. Although these aesthetics may challenge prevailing pastoral aesthetics, they normalise continued inequality in the form of concentrated land ownership, especially in the Scottish Highlands.Policy implications. Our analysis shows that aesthetics play an important role in shaping views of what is 'natural', 'normal' and 'good' and therefore desirable in what a future (recovered) nature looks like. We suggest that nature recovery initiatives take aesthetics seriously, by interrogating how idealisations of 'how nature should look' may influence decision‐making alongside ecological and other considerations. Taking aesthetics seriously also opens avenues for engaging with social and environmental justice, where alternative aesthetics can help in imagining more socially and environmentally just futures. Read the free Plain Language Summary for this article on the Journal blog. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]
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- 2024
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3. Short QT intervals in African lions.
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Scharling, Frederik S., Sandgreen, Ditte‐Mari, Stagegaard, Julia, Elbrønd, Vibeke S., Vincenti, Stefano, Isaksen, Jonas L., Wang, Tobias, Wilson, Rory P., Gunner, Richard, Marks, Nikki, Bell, Stephen H., van Rooyen, Martin C., Bennett, Nigel C., Hart, Daniel W., Daly, Angela C., Bertelsen, Mads F., Scantlebury, D. Michael, Calloe, Kirstine, and Thomsen, Morten B.
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HEART conduction system ,LIONS ,VETERINARY medicine ,HEART beat ,ENDANGERED species - Abstract
The cardiac conduction system in large carnivores, such as the African lion (Panthera leo), represents a significant knowledge gap in both veterinary science and in cardiac electrophysiology. Short QT intervals have been reported from zoo‐kept, anaesthetized lions, and our goal was to record the first ECGs from wild, conscious lions roaming freely, and compare them to zoo‐kept lions under the hypothesis that short QT is unique to zoo‐kept lions. Macroscopic and histological examinations were performed on heart tissue removed from nine healthy zoo lions. ECGs were recorded from the nine anaesthetized zoo‐kept lions, and from 15 anaesthetized and conscious wild lions in Africa. Our histological and topographical description of the lion's heart matched what has previously been published. In conscious lions, the ECG recordings revealed a mean heart rate of 70 ± 4 beats/min, with faster heart rates during the night. PQ and QT intervals were heart rate dependent in the conscious lions. Interestingly, QT intervals recorded in wild lions were markedly longer than QT intervals from zoo lions (398 ± 40 vs. 297 ± 9 ms, respectively; P < 0.0001). Anaesthesia or heart rate did not account for this difference. We provide a comprehensive description of the cardiac anatomy and electrophysiology of wild and zoo‐kept lions. QT intervals were significantly shorter in zoo lions, suggesting functional disparities in cardiac electrophysiology between wild and zoo‐kept lions, potentially related to physical fitness. These findings underscore the plasticity of cardiac electrophysiology and may be of value when reintroducing endangered species into the wild and when managing lions in human care. What is the central question of this study?How do electrocardiograms from zoo lions and free‐roaming wild lions compare?What is the main finding and its importance?QT intervals in zoo lions are shorter compared to wild lions, which may be relevant for our understanding of animals in human care and may influence conservation strategies. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Plugging biologging into animal welfare: An opportunity for advancing wild animal welfare science.
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Beaulieu, Michaël and Masilkova, Michaela
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ANIMAL welfare ,DATA loggers ,CAPTIVE wild animals ,REMOTE sensing ,ANIMAL science - Abstract
Copyright of Methods in Ecology & Evolution is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2024
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5. Low‐cost animal tracking using Bluetooth low energy beacons on a crowd‐sourced network.
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Farine, Damien R., Penndorf, Julia, Bolcato, Sofia, Nyaguthii, Brendah, and Aplin, Lucy M.
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CELL phone tracking ,HOME range (Animal geography) ,URBAN ecology ,ANIMAL tracks ,SOCIAL ecology - Abstract
Animal tracking has opened the door to address many fundamental questions in ecology and conservation. Whilst historically animals have been tracked as a means to understand their large‐scale movements, such as migration, there is now a greater focus on using tracking to study movements over smaller scales, individual variation in movement or how movements shape social network structure. With this shift in focus also comes different tracking needs, including the need to track larger numbers of individuals.Tracking studies all face some technological limitations. For example, GPS and other active tracking solutions can collect fine‐scale movement data, but have a high cost per tag, limiting the number of individuals that can be followed. They also have high low‐energy costs of data acquisition and download, limiting time periods over which data can be collected. Low‐energy passive (e.g. PIT) or active (e.g. reverse GPS) tags can overcome these limitations, but instead require animals to remain within a bounded study area or to come into close proximity to detectors.Here we describe one solution that can overcome many current limitations by employing the massive global network of personal mobile phones as gateways for tracking animals using Bluetooth low‐energy (BLE) beacons. In areas with medium to high density of people, these simple‐to‐make beacons can provide regular updates of position over long time periods (battery life 1–3 years). We describe how to use off‐the‐shelf components to produce BLE beacons that weigh c. 5–6 g and cost <$7USD. Using field‐testing, we then show that beacons are capable of producing high‐frequency tracking data that can be used to build home ranges or to detect spatiotemporal co‐occurrences among individuals.BLE beacons are a low cost, low‐energy solution for studying organisms (e.g. birds, mammals and reptiles) living and moving in urban landscapes. Their low weight and small size makes them particularly well‐suited for tracking smaller species. When combined with fixed gateways, their use can also be extended to non‐urban habitats. Their high accessibility is likely to make them an attractive solution for many research projects. [ABSTRACT FROM AUTHOR]
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- 2024
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6. xCT as a Predictor for Survival in a Population‐Based Cohort of Head and Neck Squamous Cell Carcinoma.
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Nissi, Linda, Tuominen, Sanni, Routila, Johannes, Huusko, Teemu, Ketonen, Petra, Sundvall, Maria, Leivo, Ilmo, Irjala, Heikki, Minn, Heikki, Grönroos, Tove J., and Ventelä, Sami
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SQUAMOUS cell carcinoma ,OVERALL survival ,PROGNOSIS ,GLUTAMATE transporters ,SURVIVAL rate - Abstract
Background: xCT, also known as SLC7A11 (solute carrier Family 7 Member 11), is a cystine/glutamate antiporter protein that mediates regulated cell death and antioxidant defense. The aim of this study was to investigate the effect of xCT on the outcome of patients diagnosed with new head and neck squamous cell carcinoma (HNSCC). Methods: This retrospective cohort study utilized a population‐based dataset, comprising all patients (n = 1033) diagnosed with new HNSCC during 2005–2015 in a population of 697,000 people. All patients (n = 585) with a tumor tissue sample available for immunohistochemical (IHC) staining were included. The follow‐up rates were 97% and 81% at 3 and 5 years, respectively. Also, the specificity of the anti‐xCT antibody was validated. Results: The expression level and prognostic significance of xCT were strongly dependent on tumor location. In oropharyngeal squamous cell carcinoma (OPSCC) patients, xCT expression was a significant prognostic factor for 5‐year overall survival (OAS) (HR: 2.71; 95% CI 1.67–4.39; p < 0.001), disease‐specific survival (DSS) (HR: 2.58; 95% CI 1.47–4.54; p = 0.001), and disease‐free survival (DFS) (HR: 2.69; 95% CI 1.55–4.64; p < 0.001). Five‐year survival rates for OPSCC patients with high and low levels of xCT were OAS 34% versus 62%; DSS 51% versus 73%; DFS 43% versus 73%, respectively. According to a multivariate model adjusted for age, T‐class, nodal positivity, and tobacco consumption, xCT was an independent prognostic factor for 3‐year survival, in which it outperformed p16 IHC. Similar associations were not observed in squamous cell carcinomas of oral cavity or larynx. Regarding treatment modalities, xCT was most predictive in HNSCC patients who received radiotherapy. Conclusions: High xCT expression was associated with poor prognosis in OPSCC. Our findings suggest that joint analysis of xCT and p16 may add significant value in OPSCC treatment stratification. [ABSTRACT FROM AUTHOR]
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- 2024
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7. The Cost of Self‐Defense: Browsing Effects in the Rare Plant Species Salix arizonica.
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Lencioni, Shannon J., Massatti, Rob, Keefover‐Ring, Ken, and Holeski, Liza M.
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NATURAL selection ,ENDANGERED species ,RARE plants ,PLANT protection ,COST allocation - Abstract
Coevolution between plants and their animal predators has led to diverse defensive adaptations. Multiple theories of defense propose that there are resource allocation costs associated with producing chemical defenses. One leading hypothesis, optimal defense theory (ODT), suggests that natural selection will result in the allocation of resources to defenses that optimize the cost‐to‐benefit ratio between defense and other functional processes. The population decline of the rare subalpine wetland species, Arizona willow (Salix arizonica), has been attributed to various biotic and abiotic factors, with browsing from wild and domestic ungulates as a significant concern for at least three decades. In a field experiment using natural populations, we compare the relationship between phytochemical defense and height in Arizona willows with and without long‐term protection from browsing via browse exclosures. Consistent with the predictions of ODT, individuals with physical protection from ungulate browsing for multiple years had significantly lower phenolic glycoside (PG) concentrations and increased plant height compared to unprotected individuals. A similar pattern was found across all individuals, whereby total PG concentration and height were negatively correlated. In a short‐term experiment in natural populations, changes in levels of defense were not observed when plants received protection for only one growing season. The contrasting pattern of defense plasticity in response to long‐term versus short‐term physical protection suggests a differential plastic response in this long‐lived species. Delayed reduction in PG concentration may serve as a benefit to avoid mismatches between environmental cues and responses. Our research sheds light on the intricate dynamics between plant‐defense strategies, environmental pressures, and evolutionary adaptations in shaping plant–browser interactions. [ABSTRACT FROM AUTHOR]
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- 2024
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8. Introducing a unique animal ID and digital life history museum for wildlife metadata.
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Wikelski, Martin, Quetting, Michael, Bates, John, Berger‐Wolf, Tanya, Bohrer, Gil, Börger, Luca, Chapple, Taylor, Crofoot, Margaret C., Davidson, Sarah C., Dechmann, Dina K. N., Ellis‐Soto, Diego, Ellwood, Elizabeth R., Fiedler, Wolfgang, Flack, Andrea, Fruth, Barbara, Franconi, Novella, Havmøller, Rasmus Worsøe, Hirt, Julian, Hussey, Nigel E., and Iannarilli, Fabiola
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TEMPORARY stores ,DIGITAL certificates ,MEDICAL screening ,LIFE history theory ,DATABASES - Abstract
Over the past five decades, a large number of wild animals have been individually identified by various observation systems and/or temporary tracking methods, providing unparalleled insights into their lives over both time and space. However, so far there is no comprehensive record of uniquely individually identified animals nor where their data and metadata are stored, for example photos, physiological and genetic samples, disease screens, information on social relationships.Databases currently do not offer unique identifiers for living, individual wild animals, similar to the permanent ID labelling for deceased museum specimens.To address this problem, we introduce two new concepts: (1) a globally unique animal ID (UAID) available to define uniquely and individually identified animals archived in any database, including metadata archived at the time of publication; and (2) the digital 'home' for UAIDs, the Movebank Life History Museum (MoMu), storing and linking metadata, media, communications and other files associated with animals individually identified in the wild. MoMu will ensure that metadata are available for future generations, allowing permanent linkages to information in other databases.MoMu allows researchers to collect and store photos, behavioural records, genome data and/or resightings of UAIDed animals, encompassing information not easily included in structured datasets supported by existing databases. Metadata is uploaded through the Animal Tracker app, the MoMu website, by email from registered users or through an Application Programming Interface (API) from any database. Initially, records can be stored in a temporary folder similar to a field drawer, as naturalists routinely do. Later, researchers and specialists can curate these materials for individual animals, manage the secure sharing of sensitive information and, where appropriate, publish individual life histories with DOIs. The storage of such synthesized lifetime stories of wild animals under a UAID (unique identifier or 'animal passport') will support basic science, conservation efforts and public participation. [ABSTRACT FROM AUTHOR]
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- 2024
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9. A heuristic method to evaluate consequences for flight control and stability induced by attachment of biologging devices to birds and bats.
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Katzner, Todd E. and Young, George S.
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ANIMAL flight ,BODY size ,AEROSPACE engineers ,AEROSPACE engineering ,HEURISTIC - Abstract
Biologging is central to the study of wildlife, but questions remain about the minimization of effects of biologging devices. Rarely considered are changes biologging devices induce on an animal's centre of mass (COM) and resulting losses of flight control and stability.We applied established aeronautical principles to estimate how the COM of a flying bird or bat may be affected by the typical positioning of a biologging device on the neck, back, hips or tail. We then adopted modified thresholds from aerospace engineering to estimate limits beyond which changes to COM result in fitness‐relevant alterations to flight control and stability.Generic models illustrate a trade‐off between the placement and mass of a biologging device that influences flight control and stability. Seven species‐specific examples show the substantial differences in consequences of changes to COM for animals of different sizes and body types. Placement of a device on the tail always resulted in the greatest shift in COM and placement in the centre of the back resulted in the smallest shift. The 5% weight threshold some use for a biologging device provides little room for error in terms of stability and can easily cause dangerous changes to COM. The 3% weight threshold others use causes considerably smaller changes in the COM, but when placed away from the natural COM, still can affect flight control and stability.Researchers interested in minimizing the effects to fitness of wildlife should consider weight, balance and COM when affixing biologging devices. The farther a device is from the natural COM, the smaller it should be relative to the mass of the animal. [ABSTRACT FROM AUTHOR]
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- 2024
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10. Development of a multisensor biologging collar and analytical techniques to describe high‐resolution spatial behavior in free‐ranging terrestrial mammals.
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Painter, Michael S., Silovský, Václav, Blanco, Justin, Holton, Mark, Faltusová, Monika, Wilson, Rory, Börger, Luca, Psotta, Liza, Ramos‐Almodovar, Fabian, Estrada, Luis, Landler, Lukas, Malkemper, Pascal, Hart, Vlastimil, and Ježek, Miloš
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MAGNETIC recording heads ,COMPASS (Orienteering & navigation) ,SPATIAL behavior ,MAGNETIC fields ,MAGNETIC measurements - Abstract
Biologging has proven to be a powerful approach to investigate diverse questions related to movement ecology across a range of spatiotemporal scales and increasingly relies on multidisciplinary expertise. However, the variety of animal‐borne equipment, coupled with little consensus regarding analytical approaches to interpret large, complex data sets presents challenges and makes comparison between studies and study species difficult. Here, we present a combined hardware and analytical approach for standardizing the collection, analysis, and interpretation of multisensor biologging data. Here, we present (i) a custom‐designed integrated multisensor collar (IMSC), which was field tested on 71 free‐ranging wild boar (Sus scrofa) over 2 years; (ii) a machine learning behavioral classifier capable of identifying six behaviors in free‐roaming boar, validated across individuals equipped with differing collar designs; and (iii) laboratory and field‐based calibration and accuracy assessments of animal magnetic heading measurements derived from raw magnetometer data. The IMSC capacity and durability exceeded expectations, with a 94% collar recovery rate and a 75% cumulative data recording success rate, with a maximum logging duration of 421 days. The behavioral classifier had an overall accuracy of 85% in identifying the six behavioral classes when tested on multiple collar designs and improved to 90% when tested on data exclusively from the IMSC. Both laboratory and field tests of magnetic compass headings were in precise agreement with expectations, with overall median magnetic headings deviating from ground truth observations by 1.7° and 0°, respectively. Although multisensor equipment and sophisticated analyses are now commonplace in biologging studies, the IMSC hardware and analytical framework presented here provide a valuable tool for biologging researchers and will facilitate standardization of biologging data across studies. In addition, we highlight the potential of additional analyses available using this framework that can be adapted for use in future studies on terrestrial mammals. [ABSTRACT FROM AUTHOR]
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- 2024
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11. Toward a comparative framework for studies of altitudinal migration.
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Vander Pluym, David and Mason, Nicholas A.
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ANIMAL mechanics ,COMPARATIVE biology ,ANIMAL migration ,RESEARCH personnel ,ZOOLOGISTS - Abstract
The study and importance of altitudinal migration has attracted increasing interest among zoologists. Altitudinal migrants are taxonomically widespread and move across altitudinal gradients as partial or complete migrants, subjecting them to a wide array of environments and ecological interactions. Here, we present a brief synthesis of recent developments in the field and suggest future directions toward a more taxonomically inclusive comparative framework for the study of altitudinal migration. Our framework centers on a working definition of altitudinal migration that hinges on its biological relevance, which is scale‐dependent and related to fitness outcomes. We discuss linguistic nuances of altitudinal movements and provide concrete steps to compare altitudinal migration phenomena across traditionally disparate study systems. Together, our comparative framework outlines a "phenotypic space" that contextualizes the biotic and abiotic interactions encountered by altitudinal migrants from divergent lineages and biomes. We also summarize new opportunities, methods, and challenges for the ongoing study of altitudinal migration. A persistent, primary challenge is characterizing the taxonomic extent of altitudinal migration within and among species. Fortunately, a host of new methods have been developed to help researchers assess the taxonomic prevalence of altitudinal migration—each with their own advantages and disadvantages. An improved comparative framework will allow researchers that study disparate disciplines and taxonomic groups to better communicate and to test hypotheses regarding the evolutionary and ecological drivers underlying variation in altitudinal migration among populations and species. [ABSTRACT FROM AUTHOR]
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- 2024
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12. Both movements and breeding performance are affected by individual experience in the Bonelli's eagle Aquila fasciata.
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Viollat, Lise, Millon, Alexandre, Ponchon, Cécile, Ravayrol, Alain, Couturier, Thibaut, and Besnard, Aurélien
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ANIMAL sexual behavior ,WEATHER ,BIRDS of prey ,FRENCH people ,ENERGY industries - Abstract
Movement is a key behaviour to better understand how individuals respond to their environment. Movement behaviours are affected by both extrinsic factors that individuals face, such as weather conditions, and intrinsic factors, such as sex and experience. Because of the energy costs it entails, movement behaviours can have direct consequences on an individual's demographic parameters—and ultimately on population dynamics. However, the relationship between extrinsic factors, intrinsic factors, daily movement behaviour and demographic parameters such as breeding performance is poorly known, in particular for central place forager territorial species. We investigated here the link between movement behaviours and breeding performance of the French population of Bonelli's eagle (Aquila fasciata), a territorial and sedentary long‐lived raptor, and how this link may depend on extrinsic and intrinsic factors. By using data from annual monitoring of breeding performance for the population and GPS tracking of 48 individuals (26 males and 22 females), we found that the breeding performance of this population was mainly driven by whether a new individual was recruited into the territory, and only slightly by weather conditions. Movement behaviours (proportion of time in flight, range of movement and straightness of trajectories) showed large between‐individual variation. Those behaviours were related with weather conditions (wind and rainfall) at a daily scale, as well as with individual's experience. We found only one significant correlation between movements and breeding performance: male Bonelli's eagles spending more time flying during chick‐rearing phase had lower productivity. Movement behaviours and breeding performance were also indirectly linked through individual's experience, with more experienced birds having better breeding success and a shorter range of movement and spent less time in flight. This suggests that experienced individuals progressively acquire knowledge of their breeding territory, are more efficient in finding prey, and adapt their foraging strategies to weather conditions to minimise energy costs, allowing them higher breeding performance. [ABSTRACT FROM AUTHOR]
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- 2024
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13. African dryland antelope trade‐off behaviours in response to heat extremes.
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Berry, Paul, Dammhahn, Melanie, Hauptfleisch, Morgan, Hering, Robert, Jansen, Jakob, Kraus, Anna, and Blaum, Niels
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ANTELOPES ,BEHAVIOR modification ,SUPERVISED learning ,TIME management ,SAVANNAS ,NUTRIENT uptake - Abstract
Climate change is predicted to narrow the prescriptive zone of dryland species, potentially leading to behavioural modifications with fitness consequences. This study explores the behavioural responses of three widespread African antelope species—springbok, kudu and eland—to extreme heat in a dryland savanna. We classified the behaviour of 29 individuals during the hot, dry season on the basis of accelerometer data using supervised machine learning and analysed the impact of afternoon heat on behaviour‐specific time allocation and overall dynamic body acceleration (ODBA), a proxy for energy expenditure, along with compensatory changes over the 24‐hour cycle. Extreme afternoon heat reduced feeding time in all three antelope species, increased ruminating and resting time, while only minimally affecting walking time. With rising heat, all three species reduced ODBA on feeding, while eland reduced and kudu increased ODBA on walking. Diel responses in behaviour differed between species, but were generally characterised by daytime reductions in feeding and increases in ruminating or resting on hot days compared to cool days. While antelope compensated for heat‐driven behavioural change over the 24‐hour cycle in some cases, significant differences persisted in others, including reduced feeding and increased rumination and resting. The impact of heat on antelope behaviour reveals trade‐offs between feeding and thermoregulation, as well as between feeding and rumination, the latter suggesting a strategy to enhance nutrient uptake through increased digestive efficiency, while the walking response suggests narrow constraints between cost and necessity. Our findings suggest that heat influences both behaviour‐specific time allocation and energy expenditure. Altered diel behaviour patterns and incomplete compensation over the 24‐hour cycle point to fitness consequences. The need to prioritise thermoregulation over feeding is likely to narrow the prescriptive zone of these dryland antelope. [ABSTRACT FROM AUTHOR]
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- 2024
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14. In pursuit of high‐fidelity waveguide imaging restoration using deep learning algorithms: A review.
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Zhou, Ruiqi, Yang, Yang, Xiao, Jiong, Liu, Zihang, Hao, Feifei, Zeng, Jinwei, and Wang, Jian
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MACHINE learning ,IMAGE reconstruction ,DEEP learning ,OPTICAL apertures ,IMAGE transmission ,OPTICAL waveguides - Abstract
Waveguide imaging is considered as one of the most important and widely used techniques in biomedical endoscopic applications. Recently, many attempts have been made to develop ever miniaturised in vivo imaging devices for minimally invasive clinical inspections. However, miniaturisation implies using a smaller optical aperture waveguide, which may introduce pixilation artefacts and pixel‐to‐pixel distortion to deteriorate overall imaging quality. To overcome the constraints imposed by miniaturised waveguides, the deep learning algorithms can be an effective tool to cure the imaging distortion via post‐processing, which already had encouraging results in many scenes of automatic machine‐learnt imaging restoration. The authors introduce the waveguide imaging transmission and the restoration algorithms, and then discuss their possible combinations. The results show that the integration of advanced waveguides and optimised algorithms can achieve unprecedented imaging restoration than before. In the future, in order to fill the need for high‐quality reconstructed images, we should not only improve ability of software to optimise restoration algorithms but also correspondingly concern hardware progress in waveguides. The practical sense of it is to help researchers better master and take advantage of these combinations to make next generation high‐fidelity endoscopes. [ABSTRACT FROM AUTHOR]
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- 2024
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15. Identification of a risk score model based on tertiary lymphoid structure‐related genes for predicting immunotherapy efficacy in non‐small cell lung cancer.
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Mei, Shi‐Qi, Liu, Jia‐Qi, Huang, Zi‐Jian, Luo, Wei‐Chi, Peng, Ying‐Long, Chen, Zhi‐Hong, Deng, Yu, Xu, Chong‐Rui, and Zhou, Qing
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RISK assessment ,GENOMICS ,PREDICTION models ,RECEIVER operating characteristic curves ,RESEARCH funding ,IMMUNOTHERAPY ,TREATMENT effectiveness ,CELLULAR signal transduction ,MULTIVARIATE analysis ,DESCRIPTIVE statistics ,DECISION making in clinical medicine ,GENE expression profiling ,LUNG cancer ,LYMPHOID tissue ,PROGRESSION-free survival ,OVERALL survival - Abstract
Background: Tertiary lymphoid structures (TLSs) affect the prognosis and efficacy of immunotherapy in patients with non‐small cell lung cancer (NSCLC), but the underlying mechanisms are not well understood. Methods: TLSs were identified and categorized online from the Cancer Digital Slide Archive (CDSA). Overall survival (OS) and disease‐free survival (DFS) were analyzed. GSE111414 and GSE136961 datasets were downloaded from the GEO database. GSVA, GO and KEGG were used to explore the signaling pathways. Immune cell infiltration was analyzed by xCell, ssGSEA and MCP‐counter. The analysis of WGCNA, Lasso and multivariate cox regression were conducted to develop a gene risk score model based on the SU2C‐MARK cohort. Results: TLS‐positive was a protective factor for OS according to multivariate cox regression analysis (p = 0.029). Both the TLS‐positive and TLS‐mature groups exhibited genes enrichment in immune activation pathways. The TLS‐mature group showed more activated dendritic cell infiltration than the TLS‐immature group. We screened TLS‐related genes using WGCNA. Lasso and multivariate cox regression analysis were used to construct a five‐genes (RGS8, RUF4, HLA‐DQB2, THEMIS, and TRBV12‐5) risk score model, the progression free survival (PFS) and OS of patients in the low‐risk group were markedly superior to those in the high‐risk group (p < 0.0001; p = 0.0015, respectively). Calibration and ROC curves indicated that the combined model with gene risk score and clinical features could predict the PFS of patients who have received immunotherapy more accurately than a single clinical factor. Conclusions: Our data suggested a pivotal role of TLSs formation in survival outcome and immunotherapy response of NSCLC patients. Tumors with mature TLS formation showed more activated immune microenvironment. In addition, the model constructed by TLS‐related genes could predict the response to immunotherapy and is meaningful for clinical decision‐making. [ABSTRACT FROM AUTHOR]
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- 2024
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16. Identifying animal behaviours from accelerometers: Improving predictive accuracy of machine learning by refining the variables selected, data frequency, and sample duration.
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Dunford, Carolyn E., Marks, Nikki J., Wilson, Rory P., and Scantlebury, D. Michael
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ANIMAL behavior ,CATS ,ACCELEROMETERS ,RANDOM forest algorithms ,ELECTRONIC data processing ,MACHINE learning ,IDENTIFICATION - Abstract
Observing animals in the wild often poses extreme challenges, but animal‐borne accelerometers are increasingly revealing unobservable behaviours. Automated machine learning streamlines behaviour identification from the substantial datasets generated during multi‐animal, long‐term studies; however, the accuracy of such models depends on the qualities of the training data. We examined how data processing influenced the predictive accuracy of random forest (RF) models, leveraging the easily observed domestic cat (Felis catus) as a model organism for terrestrial mammalian behaviours. Nine indoor domestic cats were equipped with collar‐mounted tri‐axial accelerometers, and behaviours were recorded alongside video footage. From this calibrated data, eight datasets were derived with (i) additional descriptive variables, (ii) altered frequencies of acceleration data (40 Hz vs. a mean over 1 s) and (iii) standardised durations of different behaviours. These training datasets were used to generate RF models that were validated against calibrated cat behaviours before identifying the behaviours of five free‐ranging tag‐equipped cats. These predictions were compared to those identified manually to validate the accuracy of the RF models for free‐ranging animal behaviours. RF models accurately predicted the behaviours of indoor domestic cats (F‐measure up to 0.96) with discernible improvements observed with post‐data‐collection processing. Additional variables, standardised durations of behaviours and higher recording frequencies improved model accuracy. However, prediction accuracy varied with different behaviours, where high‐frequency models excelled in identifying fast‐paced behaviours (e.g. locomotion), whereas lower‐frequency models (1 Hz) more accurately identified slower, aperiodic behaviours such as grooming and feeding, particularly when examining free‐ranging cat behaviours. While RF modelling offered a robust means of behaviour identification from accelerometer data, field validations were important to validate model accuracy for free‐ranging individuals. Future studies may benefit from employing similar data processing methods that enhance RF behaviour identification accuracy, with extensive advantages for investigations into ecology, welfare and management of wild animals. [ABSTRACT FROM AUTHOR]
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- 2024
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17. Spatial relationship of tertiary lymphoid structures and tumor‐associated neutrophils in bladder cancer and prognostic potential for anti‐PD‐L1 immunotherapy.
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Wang, Xuechun, Juncker‐Jensen, Anna, Huang, Gang, Nagy, Mate Levente, Lu, Xuemin, Cheng, Liang, and Lu, Xin
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- 2024
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18. Exploring deep learning techniques for wild animal behaviour classification using animal‐borne accelerometers.
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Otsuka, Ryoma, Yoshimura, Naoya, Tanigaki, Kei, Koyama, Shiho, Mizutani, Yuichi, Yoda, Ken, and Maekawa, Takuya
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DEEP learning ,ANIMAL classification ,ANIMAL behavior ,HUMAN activity recognition ,DATA augmentation ,CONVOLUTIONAL neural networks - Abstract
Machine learning‐based behaviour classification using acceleration data is a powerful tool in bio‐logging research. Deep learning architectures such as convolutional neural networks (CNN), long short‐term memory (LSTM) and self‐attention mechanism as well as related training techniques have been extensively studied in human activity recognition. However, they have rarely been used in wild animal studies. The main challenges of acceleration‐based wild animal behaviour classification include data shortages, class imbalance problems, various types of noise in data due to differences in individual behaviour and where the loggers were attached and complexity in data due to complex animal‐specific behaviours, which may have limited the application of deep learning techniques in this area.To overcome these challenges, we explored the effectiveness of techniques for efficient model training: data augmentation, manifold mixup and pre‐training of deep learning models with unlabelled data, using datasets from two species of wild seabirds and state‐of‐the‐art deep learning model architectures.Data augmentation improved the overall model performance when one of the various techniques (none, scaling, jittering, permutation, time‐warping and rotation) was randomly applied to each data during mini‐batch training. Manifold mixup also improved model performance, but not as much as random data augmentation. Pre‐training with unlabelled data did not improve model performance. The state‐of‐the‐art deep learning models, including a model consisting of four CNN layers, an LSTM layer and a multi‐head attention layer, as well as its modified version with shortcut connection, showed better performance among other comparative models. Using only raw acceleration data as inputs, these models outperformed classic machine learning approaches that used 119 handcrafted features.Our experiments showed that deep learning techniques are promising for acceleration‐based behaviour classification of wild animals and highlighted some challenges (e.g. effective use of unlabelled data). There is scope for greater exploration of deep learning techniques in wild animal studies (e.g. advanced data augmentation, multimodal sensor data use, transfer learning and self‐supervised learning). We hope that this study will stimulate the development of deep learning techniques for wild animal behaviour classification using time‐series sensor data. [ABSTRACT FROM AUTHOR]
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- 2024
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19. Adoption by olive baboons (Papio anubis) of newly constructed electricity pylons as sleeping sites in Laikipia, Kenya.
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Lenguya, Laiyon, Ewaton, Lolimo, and Pilfold, Nicholas W.
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UTILITY poles ,BABOONS ,SLEEP ,OLIVE ,LANDSCAPE changes ,BODY temperature regulation - Abstract
Olive baboons (Papio anubis) use fixed, secure, and naturally occurring sleeping sites such as tall trees and rocky cliffs, as protection from predators and often show a selection preference for particular trees or rocky cliff faces. We documented olive baboons' adoption of recently constructed high‐tension electrical transmission towers (pylons) as a novel type of sleeping site in Laikipia, Kenya. The use of pylons suggests that the greatest potential benefits may include reduced parasite exposure and predation avoidance. Thermoregulation and feeding efficiency are not supported as benefits because pylons increase baboons' exposure to wind and cool nighttime temperatures and the pylons were constructed in locations independent of established feeding sites. These observations advance our understanding of olive baboon sleeping site selection in a changing landscape. [ABSTRACT FROM AUTHOR]
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- 2024
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20. Frontotemporal lobar degeneration and ubiquitin immunohistochemistry.
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Josephs, K. A., Holton, J. L., Rossor, M. N., Godbolt, A. K., Ozawa, T., Strand, K., Khan, N., AI-Sarraj, S., and Revesz, T.
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TEMPORAL lobe ,UBIQUITIN ,PROTEINS ,DEGENERATION (Pathology) ,IMMUNOHISTOCHEMISTRY ,NEUROLOGICAL disorders - Abstract
K. A. Josephs, J. L. Holton, M. N. Rossor, A. K. Godbolt, T. Ozawa, K. Strand, N. Khan, S. Al-Sarraj and T. Revesz (2004) Neuropathology and Applied Neurobiology, doi: 10.1111/j.1365-2990.2004.00545.x Frontotemporal lobar degeneration and ubiquitin immunohistochemistry We set out to determine the frequency of the different pathologies underlying frontotemporal degeneration (FTD) in our brain bank series, by reviewing all cases of pathologically diagnosed FTD over the last 12 years. We identified and reviewed 29 cases of FTD and classified them using the most recent consensus criteria with further histological analysis of 6 initially unclassifiable cases. Detailed histological analysis of these 6 cases revealed variable numbers of ubiquitin-positive (tau and α-synuclein-negative) inclusions in 5 cases, consistent with the diagnosis of frontotemporal lobar degeneration with ubiquitin-only-immunoreactive neuronal changes (FTLD-U). As a consequence of the current re-evaluation, 18 (62%) of the 29 cases with FTD have underlying pathology consistent with FTLD-U. Therefore in our brain bank series of frontotemporal degeneration, most cases were non-tauopathies with FTLD-U accounting for 62% of all the diagnoses. [ABSTRACT FROM AUTHOR]
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- 2004
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21. Dynamic energy landscapes of predators and the implications for modifying prey risk.
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Papastamatiou, Yannis P., Binder, Benjamin M., Boswell, Kevin M., Malone, Margaret A., Heithaus, Michael R., Huveneers, Charlie, Mourier, Johann, and Harborne, Alastair R.
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PREDATION ,LANDSCAPES ,SNOW accumulation ,PREDATORY animals ,MARINE ecology ,WIND speed ,SNOW cover - Abstract
Landscapes of fear describe a spatial representation of an animal's perceived risk of predation and the associated foraging costs, while energy landscapes describe the spatial representation of their energetic cost of moving and foraging. Fear landscapes are often dynamic and change based on predator presence and behaviour, and variation in abiotic conditions that modify risk. Energy landscapes are also dynamic and can change across diel, seasonal, and climatic timescales based on variability in temperature, snowfall, wind/current speeds, etc.Recently, it was suggested that fear and energy landscapes should be integrated. In this paradigm, the interaction between landscapes relates to prey being forced to use areas of the energy landscape they would avoid if risk were not a factor. However, dynamic energy landscapes experienced by predators must also be considered since they can affect their ability to forage, irrespective of variation in prey behaviour. We propose an additional component to the fear and dynamic energy landscape paradigm that integrates landscapes of both prey and predators, where predator foraging behaviour is modulated by changes in their energyscape.Specifically, we integrate the predator's energy landscape into foraging theory that predicts prey patch‐leaving decisions under the threat of predation. We predict that as a predator's energetic cost of foraging increases in a habitat, then the prey's foraging cost of predation and patch quitting harvest rate, will decrease. Prey may also decrease their vigilance in response to increased energetic foraging costs for predators, which will lower giving‐up densities of prey.We then provide examples in terrestrial, aerial, and marine ecosystems where we might expect to see these effects. These include birds and sharks which use updrafts that vary based on wind and current speeds, tidal state, or temperature, and terrestrial predators (e.g. wolves) whose landscapes vary seasonally with snow depth or ice cover which may influence their foraging success and even diet selection.A predator perspective is critical to considering the combination of these landscapes and their ecological consequences. Dynamic predator energy landscapes could add an additional spatiotemporal component to risk effects, which may cascade through food webs. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]
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- 2024
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22. Factors influencing nursing and allied health recent graduates' rural versus urban preferred principal place of practice: A cross‐sectional data linkage study.
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Fisher, Karin, Depczynski, Julie, Mitchell, Eleanor, and Smith, Anthony
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PROFESSIONAL practice ,LIFESTYLES ,VOCATIONAL guidance ,RURAL health services ,CONFIDENCE intervals ,MEDICAL students ,CROSS-sectional method ,COST of living ,COMMUNITY health services ,MEDICAL personnel ,HOSPITAL nursing staff ,CHI-squared test ,DESCRIPTIVE statistics ,URBAN health ,LOGISTIC regression analysis ,ODDS ratio ,ALLIED health personnel - Abstract
Introduction: Disparities between metropolitan and non‐metropolitan health workforce must be addressed to reduce inequities in health care access. Understanding factors affecting early career practitioners' choice of practice location can inform workforce planning. Objective: To investigate influences on rural practice location preferences of recent graduates. Design: Cross‐sectional analysis linked university enrolment, Graduate Outcomes Survey (GOS) and Australian Health Professional Regulation Agency (Ahpra) principal place of practice (PPP) for 2018 and 2019 nursing and allied health graduates from two Australian universities. Chi‐squared tests and logistic regression compared rural versus urban PPP and locational preference. Findings: Of 2979 graduates, 1295 (43.5%) completed the GOS, with 63.7% (n = 825) working in their profession and 84.0% of those (n = 693) in their preferred location. Ahpra PPP data were extracted for 669 (81.1%) of those working in their profession. Most reported influences were 'proximity to family/friends' (48.5%), 'lifestyle of the area' (41.7%) and 'opportunity for career advancement' (40.7%). Factors most influential for rural PPP were 'cost of accommodation/housing' (OR = 2.26, 95% CI = 1.23–4.17) and 'being approached by an employer' (OR = 2.10, 95% CI = 1.12–3.92). Having an urban PPP was most influenced by 'spouse/partners employment/career' (OR = 0.53, 95% CI = 0.30–0.93) and 'proximity to family/friends' (OR = 0.41, 95% CI = 0.24–0.72). Discussion: While the findings add strength to the understanding that graduates who originated from a rural area are most likely to take up rural practice in their preferred location, varied social and professional factors are influential on decision‐making. Conclusions: It is imperative to recruit students from non‐metropolitan regions into health professional degrees, as well as addressing other influences on choice of practice location. [ABSTRACT FROM AUTHOR]
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- 2024
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23. Emergent time‐spaces of working from home: Lessons from pandemic geographies.
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Orman, Emily, M c̲ Guirk, Pauline, and Warren, Andrew
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TELECOMMUTING ,FLEXIBLE work arrangements ,PANDEMICS ,ECONOMIC geography ,COVID-19 pandemic - Abstract
The COVID‐19 pandemic and consequent health regulations compelled office‐based knowledge workers to work from home (WFH) en masse. Government and employer directives to WFH disrupted common norms of commuting to city office spaces and reshaped the geographies of office‐based knowledge work, with potentially lasting implications. Pandemic‐induced cohabitation of work‐space and home‐space saw more workers navigating the performance of paid labour in the home to produce new relational geographies of home, work, and worker. This paper provides a window on the lived experiences of the sizeable cohort of office‐based knowledge workers displaced from Sydney's CBD to undertake WFH in the Illawarra region during the pandemic. We explore the unfolding pandemic geographies of work and home by drawing together feminist economic geography and geographies of home literatures. Our analysis reveals the emergent and variegated time‐spaces of WFH that emerged as the rhythms and routines of WFH shaped the home and vice versa. The analysis also reveals the differentiated agency of embodied workers to orchestrate emergent configurations of WFH, shaped by gender and by the socio‐materialities of home shaped by size, tenure, and life‐cycle stage. We conclude by drawing out important lines of analysis for further research as "hybrid work" evidently becomes entrenched post‐COVID. [ABSTRACT FROM AUTHOR]
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- 2024
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24. Badger Ecology, Bovine Tuberculosis, and Population Management: Lessons from the Island of Ireland.
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Byrne, Andrew W., Allen, Adrian, Ciuti, Simone, Gormley, Eamonn, Kelly, David J., Marks, Nikki J., Marples, Nicola M., Menzies, Fraser, Montgomery, Ian, Newman, Chris, O'Hagan, Maria, Reid, Neil, Scantlebury, David M., Stuart, Peter, and Tsai, Ming-shan
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TUBERCULOSIS in cattle ,WILDLIFE conservation ,BADGERS ,OLD World badger ,DISEASE management ,COEXISTENCE of species ,CATTLE herding - Abstract
The European badger, Meles meles, is an important wildlife host for Mycobacterium bovis and contributes to the epidemiology of bovine tuberculosis (bTB) in cattle in several countries. The control of zoonotic diseases, such as bTB, is a central component of global One-Health strategies. Such strategies are complicated by human–wildlife conflicts, particularly where wildlife reservoirs are legally protected. The contrasting objectives of disease management and wildlife conservation, therefore, can require significant investment in research to support evidence-based policies. In Britain and Ireland, for example, badgers are a legally protected species but are also subject to lethal control and vaccination for disease management. In this paper, we review recent (2012–2022) advances in research on this wildlife host on the island of Ireland, which is used to underpin national policies and identify research gaps. In recent years, significant advances in estimating key parameters related to badger management and population dynamics have been made, including estimating population abundance at varying scales (local, landscape, and national). Advances in tracking technology, integrated with mark-recapture and modelling tools, have provided significant insights into the movement ecology of badgers and their interactions with cattle. The adaptation of genetic technologies has improved our understanding of the transmission dynamics of M. bovis among different hosts. As a disease management strategy, the culling of badgers to control bTB has reduced badger densities significantly, although this is not considered a sustainable sole long-term solution to the problem of spillback infection. The recent development of vaccination strategies presents an additional approach to control the disease in wild populations. These types of interventions will require significant applied research to ensure they are sustainable and to maximise benefits. It is also expected that focused research efforts will improve human–wildlife coexistence in the context of the broader One-Health strategy. [ABSTRACT FROM AUTHOR]
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- 2024
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25. Resting metabolic rate and lung function in fasted and fed rough‐toothed dolphins, Steno bredanensis.
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Fahlman, Andreas, Rhieu, Kaylee, Alessi, Brie, Marquardt, Shelly, Schisa, Michelle B., Sanchez‐Contreras, Guillermo J., and Larsson, Josefin
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AQUATIC mammals ,DOLPHINS ,LUNG volume measurements ,MANAGED care programs ,PULMONARY function tests - Abstract
We measured resting metabolic rate (RMR), tidal volume (VT), breathing frequency (fR), respiratory flow, and end‐expired gases in rough‐toothed dolphins (Steno bredanensis) housed in managed care after an overnight fast and 1–2 hr following a meal. The measured average (± standard deviation) VT (4.0 ± 1.3 L) and fR (1.9 ± 1.0 breaths/min) were higher and lower, respectively, as compared with estimated values from both terrestrial and aquatic mammals, and the average VT was 43% of the estimated total lung capacity. The end‐expired gas levels suggested that this species keep alveolar O2 (10.6% or 80 mmHg) and CO2 (7.6% or 57 mmHg), and likely arterial gas tensions, low and high, respectively, to maximize efficiency of gas exchange. We show that following an overnight fast, the RMR (566 ± 158 ml O2/min) was 1.8 times the estimated value predicted by Kleiber for terrestrial mammals of the same size. We also show that between 1 and 2 hr after ingestion of a meal, the metabolic rate increases an average of 29% (709 ± 126 ml O2/min). Both body mass (Mb) and fR significantly altered the measured RMR and we propose that both these variables should be measured when estimating energy use in cetaceans. [ABSTRACT FROM AUTHOR]
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- 2024
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26. Thinking night studies through a southern European perspective.
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Tomasella, Giuseppe
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ROMANCE languages ,INTERDISCIPLINARY research ,ENGLISH language - Abstract
To emphasise the contribution of situated perspectives to the advancement of the field, this review provides a genealogy of night studies across southwestern Europe. This interdisciplinary field of research has significantly developed in English‐speaking scholarly communities, and it has only more recently been growing in importance on southwestern European scholars' research agendas. Usually, they produce research outputs in both English and a Romance language. As a result, intertwined lines of scholarly literature emerge and contribute to the advancement of night studies to different degrees, depending on international readers' proficiency in the employed (Romance) language and (inter)disciplinary interests. To help handle this accessibility issue, this review focuses on what brings night studies together, despite their heterogeneity. That is, the geographical understanding of local night space–times as situated phenomena frequently referred to as nightscape. Accordingly, the review suggests reframing the geographical nightscape as a connective concept to bridge the gaps between multilingual and multidisciplinary research, fostering the interpretation and assemblage of hybrid theoretical frameworks for situated investigations that delve into the diverse and interdependent relations co‐producing local night space–times. [ABSTRACT FROM AUTHOR]
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- 2024
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27. Bioacoustic monitoring to determine addiction levels of primates to the human sphere: A feasibility study on Japanese macaques.
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Enari, Hiroto and Enari, Haruka S.
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JAPANESE macaque ,MACAQUES ,PRIMATES ,ADDICTIONS ,FEASIBILITY studies ,HUMAN settlements ,ARCHIPELAGOES - Abstract
Some nonhuman primate species, whose original habitats have been reclaimed by artificial activities, have acquired boldness toward humans which is evident based on the diminished frequency of escape behaviors. Eventually, such species have become regular users of human settlements, and are referred to as "urban primates." Considering this, we developed a noninvasive technique based on bioacoustics to provide a transparent assessment of troop addiction levels in anthropogenic environments, which are determined by the dependence on agricultural crops and human living sphere for their diets and daily ranging, respectively. We attempted to quantify the addiction levels based on the boldness of troops when raiding settlements, characterized by a "landscape of fear" because of the presence of humans as predators. We hypothesized that the boldness of troops could be measured using two indices: the frequency of raiding events on settlements and the amount of time spent there. For hypothesis testing, we devised an efficient method to measure these two indices using sound cues (i.e., spontaneous calls) for tracing troop movements that are obtainable throughout the day from most primate species (e.g., contact calls). We conducted a feasibility study of this assessment procedure, targeting troops of Japanese macaques (Macaca fuscata). For this study, we collected 346 recording weeks of data using autonomous recorders from 24 troops with different addiction levels during the nonsnowy seasons. The results demonstrated that troops that reached the threshold level, at which radical interventions including mass culling of troop members is officially permitted, could be readily identified based on the following behavioral characteristics: troop members raiding settlements two or three times per week and mean time spent in settlements per raiding event exceeding 0.4 h. Thus, bioacoustic monitoring could become a valid option to ensure the objectivity of policy judgment in urban primate management. Research highlights: To cope with urban primate issues, we developed a transparent procedure to determine the addiction levels of troops to the human sphere using a bioacoustic approach, which has several advantages.We conducted a feasibility study of the present procedure by collecting 346 recording weeks of data targeting different addiction levels of Japanese macaque troops (n = 24) in eastern Japan.The frequency and duration of settlement raiding events by troops could readily be measured using the present procedure and serve as effective indices to identify problem troops, which may need to be approved for mass culling as a practical option. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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28. Genetically Engineered Membrane‐Coated Nanoparticles as Versatile Platforms with Reduced Protein Corona for Targeted siRNA Delivery.
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Zhang, Pengfei, Zhao, Lei, Liu, Heng, Chen, Hu, Wu, Yaming, Wang, Xiaoyong, Liu, Gang, and Zeng, Yun
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- 2023
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29. Chased from Heaven or Escaping Tourist Hell? Venice's Graduate Students in Focus.
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Russo, Antonio Paolo and Salerno, Giacomo‐Maria
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GRADUATE students ,CITIES & towns ,ADULT education ,LIFE history theory ,YOUNG adults ,PAVILIONS - Abstract
This work addresses a key question for the construction and evolution of university cities: their retentiveness of the student population once they complete their studies. It so does with a focus on a distinctively tourist city like Venice, highly attractive for young adults in education, yet at the same time subject to strong pressures for displacement of stable residents. The balance between these two forcefields seems to be on the losing side in recent years. In our research we trace this evolution, through the life histories of a sample of graduates at local universities that resided in Venice in different periods over the last 30 years. We therefore tackle the experiences, motivations and perceptions that have either favoured their integration in this 'dream place', or triggered an eventual decision to leave, framed by the irresistible expansion of the city's tourist dimension. [ABSTRACT FROM AUTHOR]
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- 2023
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30. Financializing Through Crisis? Student Housing and Studentification During the Covid‐19 Pandemic and Beyond.
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Revington, Nick and Benhocine, Celia
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COVID-19 pandemic ,STUDENT housing ,CITIES & towns ,CORPORATION reports ,FINANCIALIZATION - Abstract
The emergence of purpose‐built student accommodation (PBSA) as a 'global' asset class has physically and socially transformed university cities through 'new‐build studentification' implicated in the financialization of urban space. Yet, the COVID‐19 pandemic has exposed the risk inherent in this asset's reliance on a narrow submarket, as students' domestic and international mobilities were temporarily disrupted. We interrogate PBSA providers' response to the pandemic through the analysis of real estate consultancy reports, firms' annual reports and other investor‐facing documents, in Africa, Australia, Europe and North America, demonstrating how the financialization of this niche sector is sustained through crisis. Tactics include building goodwill to expand market share, temporarily reorienting towards domestic students and operational strategies to cut costs and increase revenues. Despite the sector's optimism, these approaches amplify existing trends of finance‐driven new‐build studentification in university cities, characterized by uneven development, the privatization of student housing and deepening class and age segregation. [ABSTRACT FROM AUTHOR]
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- 2023
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31. Direct measurement of cruising and burst swimming speeds of the shortfin mako shark (Isurus oxyrinchus) with estimates of field metabolic rate.
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Waller, Matt J., Queiroz, Nuno, da Costa, Ivo, Cidade, Tiago, Loureiro, Bruno, Womersley, Freya C., Fontes, Jorge, Afonso, Pedro, Macena, Bruno C. L., Loveridge, Alexandra, Humphries, Nicolas E., Southall, Emily J., and Sims, David W.
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SHARKS ,FISH locomotion ,SWIMMING ,MARINE fishes ,SPEED measurements ,SPEED - Abstract
The shortfin mako shark is a large‐bodied pursuit predator thought to be capable of the highest swimming speeds of any elasmobranch and potentially one of the highest energetic demands of any marine fish. Nonetheless, few direct speed measurements have been reported for this species. Here, animal‐borne bio‐loggers attached to two mako sharks were used to provide direct measurements of swimming speeds, kinematics and thermal physiology. Mean sustained (cruising) speed was 0.90 m s−1 (±0.07 s.d.) with a mean tail‐beat frequency (TBF) of 0.51 Hz (±0.16 s.d.). The maximum burst speed recorded was 5.02 m s−1 (TBFmax = 3.65 Hz) from a 2 m long female. Burst swimming was sustained for 14 s (mean speed = 2.38 m s−1), leading to a 0.24°C increase in white muscle temperature in the 12.5 min after the burst. Routine field metabolic rate was estimated at 185.2 mg O2 kg−1 h−1 (at 18°C ambient temperature). Gliding behaviour (zero TBF) was more frequently observed after periods of high activity, especially after capture when internal (white muscle) temperature approached 21°C (ambient temperature: 18.3°C), indicating gliding probably functions as an energy recovery mechanism and limits further metabolic heat production. The results show shortfin mako sharks generally cruise at speeds similar to other endothermic fish – but faster than ectothermic sharks – with the maximum recorded burst speed being among the highest so far directly measured among sharks, tunas and billfishes. This newly recorded high‐oxygen‐demand performance of mako sharks suggests it may be particularly vulnerable to habitat loss due to climate‐driven ocean deoxygenation. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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32. A global systematic review of frugivorous animal tracking studies and the estimation of seed dispersal distances.
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Fell, Adam, Silva, Thiago, Duthie, A. Bradley, and Dent, Daisy
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SEED dispersal ,ANIMAL tracks ,FRUGIVORES ,FOREST succession ,REGENERATION (Botany) - Abstract
Seed dispersal is one of the most important ecosystem functions globally. It shapes plant populations, enhances forest succession, and has multiple, indirect benefits for humans, yet it is one of the most threatened processes in plant regeneration, worldwide. Seed dispersal distances are determined by the diets, seed retention times and movements of frugivorous animals. Hence, understanding how we can most effectively describe frugivore movement and behaviour with rapidly developing animal tracking technology is key to quantifying seed dispersal. To assess the current use of animal tracking in frugivory studies and to provide a baseline for future studies, we provide a comprehensive review and synthesis on the existing primary literature of global tracking studies that monitor movement of frugivorous animals. Specifically, we identify studies that estimate dispersal distances and how they vary with body mass and environmental traits. We show that over the last two decades there has been a large increase in frugivore tracking studies that determine seed dispersal distances. However, some taxa (e.g. reptiles) and geographic locations (e.g. Africa and Central Asia) are poorly studied. Furthermore, we found that certain morphological and environmental traits can be used to predict seed dispersal distances. We demonstrate that flight ability and increased body mass both significantly increase estimated seed dispersal mean and maximum distances. Our results also suggest that protected areas have a positive effect on mean seed dispersal distances when compared to unprotected areas. We anticipate that this review will act as a reference for future frugivore tracking studies, specifically to target current taxonomic and geographic data gaps, and to further explore how seed dispersal relates to key frugivore and fruit traits. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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33. Mechanisms of group‐hunting in vertebrates.
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Hansen, Matthew J., Domenici, Paolo, Bartashevich, Palina, Burns, Alicia, and Krause, Jens
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TOP predators ,PREDATION ,VERTEBRATES ,COMPUTER simulation - Abstract
Group‐hunting is ubiquitous across animal taxa and has received considerable attention in the context of its functions. By contrast much less is known about the mechanisms by which grouping predators hunt their prey. This is primarily due to a lack of experimental manipulation alongside logistical difficulties quantifying the behaviour of multiple predators at high spatiotemporal resolution as they search, select, and capture wild prey. However, the use of new remote‐sensing technologies and a broadening of the focal taxa beyond apex predators provides researchers with a great opportunity to discern accurately how multiple predators hunt together and not just whether doing so provides hunters with a per capita benefit. We incorporate many ideas from collective behaviour and locomotion throughout this review to make testable predictions for future researchers and pay particular attention to the role that computer simulation can play in a feedback loop with empirical data collection. Our review of the literature showed that the breadth of predator:prey size ratios among the taxa that can be considered to hunt as a group is very large (<100 to >102). We therefore synthesised the literature with respect to these predator:prey ratios and found that they promoted different hunting mechanisms. Additionally, these different hunting mechanisms are also related to particular stages of the hunt (search, selection, capture) and thus we structure our review in accordance with these two factors (stage of the hunt and predator:prey size ratio). We identify several novel group‐hunting mechanisms which are largely untested, particularly under field conditions, and we also highlight a range of potential study organisms that are amenable to experimental testing of these mechanisms in connection with tracking technology. We believe that a combination of new hypotheses, study systems and methodological approaches should help push the field of group‐hunting in new directions. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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34. Combined threats of climate change and contaminant exposure through the lens of bioenergetics.
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Grunst, Melissa L., Grunst, Andrea S., Grémillet, David, and Fort, Jérôme
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BIOENERGETICS ,ENERGY consumption ,POWER resources ,ENERGY storage ,CLIMATE change - Abstract
Organisms face energetic challenges of climate change in combination with suites of natural and anthropogenic stressors. In particular, chemical contaminant exposure has neurotoxic, endocrine‐disrupting, and behavioral effects which may additively or interactively combine with challenges associated with climate change. We used a literature review across animal taxa and contaminant classes, but focused on Arctic endotherms and contaminants important in Arctic ecosystems, to demonstrate potential for interactive effects across five bioenergetic domains: (1) energy supply, (2) energy demand, (3) energy storage, (4) energy allocation tradeoffs, and (5) energy management strategies; and involving four climate change‐sensitive environmental stressors: changes in resource availability, temperature, predation risk, and parasitism. Identified examples included relatively equal numbers of synergistic and antagonistic interactions. Synergies are often suggested to be particularly problematic, since they magnify biological effects. However, we emphasize that antagonistic effects on bioenergetic traits can be equally problematic, since they can reflect dampening of beneficial responses and result in negative synergistic effects on fitness. Our review also highlights that empirical demonstrations remain limited, especially in endotherms. Elucidating the nature of climate change‐by‐contaminant interactive effects on bioenergetic traits will build toward determining overall outcomes for energy balance and fitness. Progressing to determine critical species, life stages, and target areas in which transformative effects arise will aid in forecasting broad‐scale bioenergetic outcomes under global change scenarios. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
35. Behaviour‐specific spatiotemporal patterns of habitat use by sea turtles revealed using biologging and supervised machine learning.
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Hounslow, Jenna L., Fossette, Sabrina, Chong, Wei, Bali, Randa, Tucker, Anton D., Whiting, Scott D., and Gleiss, Adrian C.
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SEA turtles ,REGRESSION trees ,CAMCORDERS ,POSTURE ,WILDLIFE conservation ,HABITAT selection - Abstract
Conservation of threatened species and anthropogenic threat mitigation commonly rely on spatially managed areas selected according to habitat preference. Since the impact of threats can be behaviour‐specific, such information could be incorporated into spatial management to improve conservation outcomes. However, collecting spatially explicit behavioural data is challenging.Using multi‐sensor biologging tags containing high‐resolution movement sensors (e.g. accelerometer, magnetometer, GPS) and animal‐borne video cameras, combined with supervised machine learning, we developed a method to automatically detect and geolocate typically ambiguous behaviours for the poorly understood flatback turtle Natator depressus. Subsequently, we evaluated behaviour‐specific spatiotemporal patterns of habitat use.Boosted regression trees successfully identified the presence of foraging and resting in 7074 dives (AUC > 0.9), using dive features representing characteristics of locomotory activity, body posture, and three‐dimensional dive paths validated by ancillary video data. Foraging was characterised by dives with longer duration, variable depth, tortuous bottom phases; resting was characterised by dives with decreased locomotory activity and longer duration bottom phases.Foraging and resting showed minimal spatial segregation based on 50% and 95% utilisation distributions. Expected diel patterns of behaviour‐specific habitat use were superseded by the extreme tides at the near‐shore study site. Turtles rested in areas close to the subtidal and intertidal boundary within larger overlapping foraging areas, allowing efficient access to intertidal food resources upon inundation at high tides when foraging was ~25% more likely.Synthesis and applications. Using supervised machine learning and biologging tools, we show the potential for dynamic spatial management of flatback turtles to mitigate behaviour‐specific threats by prioritising protection of important locations at pertinent times. Although results are a species‐specific response to a super‐tidal environment, our approach can be generalised to a broad range of taxa and study systems, facilitating a conceptual advance in spatial management. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
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36. Back to the wild: movements of a juvenile tiger shark released from a public aquarium.
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Jewell, Oliver J. D., D'Antonio, Ben, Blane, Stacy, Gosden, Emily, Taylor, Michael D., Calich, Hannah J., Fraser, Matthew W., and Sequeira, Ana M. M.
- Subjects
SHARKS ,AQUARIUMS ,CAPTIVITY ,OSCILLATIONS ,SPECIES - Abstract
Sharks are an important attraction for aquaria; however, larger species can rarely be kept indefinitely. To date, there has been little work tracking shark movements post‐release to the wild. The authors used high‐resolution biologgers to monitor a sub‐adult tiger shark's pre‐ and post‐release fine‐scale movements following 2 years of captivity in an aquarium. They also compared its movement with that of a wild shark tagged nearby. Despite the differences in movement between the two sharks, with vertical oscillations notably absent and greater levels of turning seen from the released shark, the captive shark survived the release. These biologgers improve insight into post‐release movements of captive sharks. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
37. Patrolling the border: Billfish exploit the hypoxic boundary created by the world's largest oxygen minimum zone.
- Author
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Logan, Ryan K., Vaudo, Jeremy J., Wetherbee, Bradley M., and Shivji, Mahmood S.
- Subjects
BORDER patrols ,PREDATION ,SATELLITE telemetry ,TOP predators ,FORAGE fishes ,REMOTE-sensing images - Abstract
Pelagic predators must contend with low prey densities that are irregularly distributed and dynamic in space and time. Based on satellite imagery and telemetry data, many pelagic predators will concentrate horizontal movements on ephemeral surface fronts—gradients between water masses—because of enhanced local productivity and increased forage fish densities.Vertical fronts (e.g. thermoclines, oxyclines) can be spatially and temporally persistent, and aggregate lower trophic level and diel vertically migrating organisms due to sharp changes in temperature, water density or available oxygen. Thus, vertical fronts represent a stable and potentially energy rich habitat feature for diving pelagic predators but remain little explored in their capacity to enhance foraging opportunities.Here, we use a novel suite of high‐resolution biologging data, including in situ derived oxygen saturation and video, to document how two top predators in the pelagic ecosystem exploit the vertical fronts created by the oxygen minimum zone of the eastern tropical Pacific.Prey search behaviour was dependent on dive shape, and significantly increased near the thermocline and hypoxic boundary for blue marlin Makaira nigricans and sailfish Istiophorus platypterus, respectively. Further, we identify a behaviour not yet reported for pelagic predators, whereby the predator repeatedly dives below the thermocline and hypoxic boundary (and by extension, below the prey). We hypothesize this behaviour is used to ambush prey concentrated at the boundaries from below.We describe how habitat fronts created by low oxygen environments can influence pelagic ecosystems, which will become increasingly important to understand in the context of global change and expanding oxygen minimum zones. We anticipate that our findings are shared among many pelagic predators where strong vertical fronts occur, and additional high‐resolution tagging is warranted to confirm this. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
38. A guide to sampling design for GPS‐based studies of animal societies.
- Author
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He, Peng, Klarevas‐Irby, James A., Papageorgiou, Danai, Christensen, Charlotte, Strauss, Eli D., and Farine, Damien R.
- Subjects
ANIMAL societies ,ANIMAL social behavior ,GPS receivers ,ANIMAL tracks ,SOCIAL groups ,SAMPLING errors ,SOCIAL dynamics ,LEVY processes - Abstract
GPS‐based tracking is widely used for studying wild social animals. Much like traditional observational methods, using GPS devices requires making a number of decisions about sampling that can affect the robustness of a study's conclusions. For example, sampling fewer individuals per group across more distinct social groups may not be sufficient to infer group‐ or subgroup‐level behaviours, while sampling more individuals per group across fewer groups limits the ability to draw conclusions about populations.Here, we provide quantitative recommendations when designing GPS‐based tracking studies of animal societies. We focus on the trade‐offs between three fundamental axes of sampling effort: (1) sampling coverage—the number and allocation of GPS devices among individuals in one or more social groups; (2) sampling duration—the total amount of time over which devices collect data and (3) sampling frequency—the temporal resolution at which GPS devices record data.We first test GPS tags under field conditions to quantify how these aspects of sampling design can affect both GPS accuracy (error in absolute positional estimates) and GPS precision (error in the estimate relative position of two individuals), demonstrating that GPS error can have profound effects when inferring distances between individuals. We then use data from whole‐group tracked vulturine guineafowl Acryllium vulturinum to demonstrate how the trade‐off between sampling frequency and sampling duration can impact inferences of social interactions and to quantify how sampling coverage can affect common measures of social behaviour in animal groups, identifying which types of measures are more or less robust to lower coverage of individuals. Finally, we use data‐informed simulations to extend insights across groups of different sizes and cohesiveness.Based on our results, we are able to offer a range of recommendations on GPS sampling strategies to address research questions across social organizational scales and social systems—from group movement to social network structure and collective decision‐making.Our study provides practical advice for empiricists to navigate their decision‐making processes when designing GPS‐based field studies of animal social behaviours, and highlights the importance of identifying the optimal deployment decisions for drawing informative and robust conclusions. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
39. Signalling in groups: New tools for the integration of animal communication and collective movement.
- Author
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Demartsev, Vlad, Gersick, Andrew S., Jensen, Frants H., Thomas, Mara, Roch, Marie A., Manser, Marta B., and Strandburg‐Peshkin, Ariana
- Subjects
HUMAN-animal communication ,ANIMAL mechanics ,COMPARATIVE method ,SOCIAL groups ,ACQUISITION of data - Abstract
Investigations of collective movement and animal communication have often followed distinct, though complementary, trajectories. Both subfields are deeply concerned with how information flows between individuals and shapes subsequent behaviour. Collective movement has largely focused on the dynamics of passive, cue‐mediated group coordination, while animal communication has primarily examined the content and function of active dyadic signal exchanges in sender–receiver frameworks. However, in many social groups, network‐wide signalling and collective movement decisions are tightly linked.Here we discuss opportunities afforded by using multi‐sensor tracking tags to simultaneously monitor the fine‐scale movements and vocalisations of entire social groups. We highlight how such data can elucidate the role of vocal signals in individual and collective movement while illuminating the structures of entire vocal‐interaction sequences at previously unexamined timescales and across entire communication networks.We identify practical and analytical challenges associated with these new tools and datasets, and present avenues for addressing them. We specifically address issues associated with the deployment and synchronisation of multiple tags, the processing and interpretation of resulting multidimensional datasets, and the benefits of combining tag‐based data collection with experimental approaches.Finally, we argue that a comparative approach employing consistent methodologies across a range of environments, populations and systems is needed to shed light on the evolutionary ecology of communication and collective behaviour. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
40. Using behavioral studies to adapt management decisions and reduce negative interactions between humans and baboons in Cape Town, South Africa.
- Author
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Fehlmann, Gaelle, O'Riain, M. Justin, Kerr‐Smith, Catherine, Hailes, Stephen, Holton, Mark, Hopkins, Phil, and King, Andrew J.
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BABOONS ,ANIMAL ecology ,SOCIAL interaction ,WILDLIFE management ,FARMS ,ROADKILL - Abstract
Understanding the behavioral ecology of wildlife that experiences negative interactions with humans and the outcome of any wildlife management intervention is essential. In the Cape Peninsula, South Africa, chacma baboons (Papio ursinus) search for anthropogenic food sources in both urban and agricultural areas. In response, the city of Cape Town and private farmers employ "rangers" to keep baboons within the Table Mountain National Park. In this study, we investigated the success of rangers' intervention in keeping baboons in their natural habitat. Based on our findings in year one, we recommended adjustments to the rangers' management strategy in year two. We recommended improved consensus of actions toward baboons (that is, when/where to herd them), and the construction of a baboon‐proof fence around one of the farms that provided a corridor to urban areas. During the 2 months following recommendations, these interventions combined resulted in a significant reduction in the time baboons spent in both urban and agricultural land. Our case study illustrates the importance of integrating research findings into ongoing management actions to improve both human livelihoods and baboon conservation through an adaptive management framework. We expect similar approaches to be beneficial in a wide range of species and contexts. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
41. Identifying social behaviours related to disease transmission in banded mongoose from accelerometer data.
- Author
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Van de Vuurst, Paige and Alexander, Kathleen A.
- Published
- 2023
- Full Text
- View/download PDF
42. An Overview of Nanomaterial Applications in Pharmacology.
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Roy, Madhura, Roy, Arpita, Rustagi, Sarvesh, and Pandey, Neha
- Subjects
DRUG delivery systems ,DRUG efficacy ,PHARMACOLOGY ,BIOMEDICAL engineering ,NANOSTRUCTURES ,MEDICAL practice ,NANOPARTICLES - Abstract
Nanotechnology has become one of the most extensive fields of research. Nanoparticles (NPs) form the base for nanotechnology. Recently, nanomaterials (NMs) are widely used due to flexible chemical, biological, and physical characteristics with improved efficacy in comparison to bulk counterparts. The significance of each class of NMs is enhanced by identifying their properties. Day by day, there is an emergence of various applications of NMs, but the toxic effects associated with them cannot be avoided. NMs demonstrate therapeutic abilities by enhancing the drug delivery system, diagnosis, and therapeutic effects of numerous agents, but determining the benefits of NMs over other clinical applications (disease-specific) or substances is an ongoing investigation. This review is aimed at defining NMs and NPs and their types, synthesis, and pharmaceutical, biomedical, and clinical applications. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
43. Working with the spoken word: A candid conference conversation and some original ideas.
- Author
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Hitchings, Russell and Latham, Alan
- Subjects
HUMAN geography ,CONVERSATION ,CONFERENCES & conventions - Abstract
This paper introduces the collection of nine short articles that make up the inaugural special section of the journal on 'thinking with methods'. It begins by outlining why a fuller conversation about different ways of handling talk in human geography might be worthwhile. Then it describes a series of conference sessions in which a small group of researchers in this field came together to consider some of the most intriguing excerpts of talk generated by their studies. It ends with an overview of how the following articles that came out of these sessions might productively shake up some of our current working conventions. This paper introduces the collection of nine short articles that make up the first special section of the journal on 'thinking with methods'. It begins by outlining why a fuller conversation about different ways of handling talk in human geography might be worthwhile. Then it describes a series of conference sessions in which a small group of researchers in this field came together to consider some of the most intriguing excerpts of talk generated by their studies. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
44. Trauma und Ressourcen/Trauma and Empowerment.
- Author
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Holton, M. Jan
- Published
- 2002
- Full Text
- View/download PDF
45. Effect of CeO2 NPs on stability of regenerated silk fibroin against UV‐aging.
- Author
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Jiang, Lei, Wu, Chengkun, Yao, Lu, Dong, Qiuxia, and Wu, Guohua
- Subjects
POLYACRYLAMIDE gel electrophoresis ,SILK fibroin ,FOURIER transform infrared spectroscopy ,SODIUM dodecyl sulfate ,CERIUM oxides - Abstract
Regenerated silk fibroin (RSF) fibers have great application prospects in medicine, textiles, optoelectronics, and other fields. However, under the synergistic action of ultraviolet, oxygen, and water, RSF will inevitably become brittle, which will greatly shorten the service life of RSF. Therefore, it is urgent to find some methods to protect RSF from aging damage. Cerium dioxide nanoparticles have a strong ultraviolet absorption and antioxidant capacity and have been used as an anti‐aging component for other biomaterials. Thus, the RSF/CeO2 NPs hybrid fibers were successfully prepared, and a series of artificial aging tests were carried out. Mechanical property is an important index to measure the aging degree. After aging, compared with RSF, the stress of RSF/CeO2 NPs hybrid fibers was increased by 130.47 ± 4.78 MPa, and the strain of RSF/CeO2 NPs hybrid fibers was increased by 69.89% ± 1.37%. The results of Fourier transform infrared spectroscopy, UV–Vis, sodium dodecyl sulfate polyacrylamide gel electrophoresis discussed the protective mechanism of CeO2 NPs, which prevent the transition from β‐sheet to α‐helix/random coil and the disorder of structure. Furthermore, RSF/CeO2 NPs hybrid fibers have an excellent antibacterial activity against Escherichia coli and Staphylococcus aureus bacteria; the antioxidant activity of RSF/CeO2 NPs hybrid fibers is gradually enhanced in the presence of UV‐light. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
46. Postpartum cessation of urban space use by a female baboon living at the edge of the City of Cape Town.
- Author
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Bracken, Anna M., Christensen, Charlotte, O'Riain, M. Justin, Fürtbauer, Ines, and King, Andrew J.
- Subjects
PUBLIC spaces ,LIFE history theory ,BABOONS ,PUERPERIUM - Abstract
Species with slow life history strategies that invest in few offspring with extended parental care need to adapt their behavior to cope with anthropogenic changes that occur within their lifetime. Here we show that a female chacma baboon (Papio ursinus) that commonly ranges within urban space in the City of Cape Town, South Africa, stops using urban space after giving birth. This change of space use occurs without any significant change in daily distance traveled or social interactions that would be expected with general risk‐sensitive behavior after birth. Instead, we suggest this change occurs because of the specific and greater risks the baboons experience within the urban space compared to natural space, and because leaving the troop (to enter urban space) may increase infanticide risk. This case study can inform methods used to manage the baboons' urban space use in Cape Town and provides insight into how life history events alter individuals' use of anthropogenic environments. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
47. Supervised versus unsupervised approaches to classification of accelerometry data.
- Author
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Sur, Maitreyi, Hall, Jonathan C., Brandt, Joseph, Astell, Molly, Poessel, Sharon A., and Katzner, Todd E.
- Subjects
MACHINE learning ,CONDORS ,SUPERVISED learning ,ACCELEROMETRY ,K-nearest neighbor classification ,EXPECTATION-maximization algorithms ,RANDOM forest algorithms - Abstract
Sophisticated animal‐borne sensor systems are increasingly providing novel insight into how animals behave and move. Despite their widespread use in ecology, the diversity and expanding quality and quantity of data they produce have created a need for robust analytical methods for biological interpretation. Machine learning tools are often used to meet this need. However, their relative effectiveness is not well known and, in the case of unsupervised tools, given that they do not use validation data, their accuracy can be difficult to assess. We evaluated the effectiveness of supervised (n = 6), semi‐supervised (n = 1), and unsupervised (n = 2) approaches to analyzing accelerometry data collected from critically endangered California condors (Gymnogyps californianus). Unsupervised K‐means and EM (expectation–maximization) clustering approaches performed poorly, with adequate classification accuracies of <0.8 but very low values for kappa statistics (range: −0.02 to 0.06). The semi‐supervised nearest mean classifier was moderately effective at classification, with an overall classification accuracy of 0.61 but effective classification only of two of the four behavioral classes. Supervised random forest (RF) and k‐nearest neighbor (kNN) machine learning models were most effective at classification across all behavior types, with overall accuracies >0.81. Kappa statistics were also highest for RF and kNN, in most cases substantially greater than for other modeling approaches. Unsupervised modeling, which is commonly used for the classification of a priori‐defined behaviors in telemetry data, can provide useful information but likely is instead better suited to post hoc definition of generalized behavioral states. This work also shows the potential for substantial variation in classification accuracy among different machine learning approaches and among different metrics of accuracy. As such, when analyzing biotelemetry data, best practices appear to call for the evaluation of several machine learning techniques and several measures of accuracy for each dataset under consideration. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
48. Using quantile regression and relative entropy to assess the period of anomalous behavior of marine mammals following tagging.
- Author
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Nielsen, Lars Reiter, Tervo, Outi M., Blackwell, Susanna B., Heide‐Jørgensen, Mads Peter, and Ditlevsen, Susanne
- Subjects
MARINE mammals ,QUANTILE regression ,MAMMAL behavior ,NARWHAL ,TAGS (Metadata) ,MARINE animals - Abstract
Tagging of animals induces a variable stress response which following release will obscure natural behavior. It is of scientific relevance to establish methods that assess recovery from such behavioral perturbation and generalize well to a broad range of animals, while maintaining model transparency. We propose two methods that allow for subdivision of animals based on covariates, and illustrate their use on N=20$$ N=20 $$ narwhals (Monodon monoceros) and N=4$$ N=4 $$ bowhead whales (Balaena mysticetus), captured and instrumented with Acousonde™ behavioral tags, but with a framework that easily generalizes to other marine animals and sampling units. The narwhals were divided into two groups based on handling time, short (t<58$$ t<58 $$ min) and long (t≥58$$ t\ge 58 $$ min), to measure the effect on recovery. Proxies for energy expenditure (VeDBA) and rapid movement (jerk) were derived from accelerometer data. Diving profiles were characterized using two metrics (target depth and dive duration) derived from depth data. For accelerometer data, recovery was estimated using quantile regression (QR) on the log‐transformed response, whereas depth data were addressed using relative entropy (RE) between hourly distributions of dive duration (partitioned into three target depth ranges) and the long‐term average distribution. Quantile regression was used to address location‐based behavior to accommodate distributional shifts anticipated in aquatic locomotion. For all narwhals, we found fast recovery in the tail of the distribution (<3 h) compared with a variable recovery at the median (∼1–10 h) and with a significant difference between groups separated by handling time. Estimates of bowhead whale recovery times showed fast median recovery (<3 h) and slow recovery at the tail (>6 h), but were affected by substantial uncertainty. For the diving profiles, as characterized by the component pair (target depth, dive duration), the recovery was slower (narwhals‐long: t<16$$ t<16 $$ h; narwhals‐short: t<10$$ t<10 $$ h; bowhead whales: <9 h) and with a difference between narwhals with short vs long handling times. Using simple statistical concepts, we have presented two transparent and general methods for analyzing high‐resolution time series data from marine animals, addressing energy expenditure, activity, and diving behavior, and which allows for comparison between groups of animals based on well‐defined covariates. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
49. Contextualising the bizarre: The integrated functioning of rib puncture as an antipredator defence in the Iberian ribbed newt (Pleurodeles waltl).
- Author
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Zamora‐Camacho, Francisco Javier
- Subjects
NEWTS ,BODY size ,WARTS ,BODIES of water ,POISONS ,FEMALES - Abstract
Numerous prey traits are the result of the pervasive evolutionary pressure imposed by predators. Mirroring their fundamental role in the fitness of prey, some antipredator defences can evolve into elaborate strategies. Such is the case of the Iberian ribbed newt (Pleurodeles waltl), a semiaquatic urodele that inhabits multiple types of inland waterbodies in central and southern Iberian Peninsula and north‐western Africa. It possesses sharp, protractile ribs, which can thwart predators by emerging through skin 'warts' they pierce, becoming impregnated with the toxicants these warts produce, and making the newts difficult to swallow. Plus, the orange colour of these warts contrasts with the predominantly dull dorsum.In this work, I studied the interactions between the number of these warts, the saliency of wart colour against dorsum colour of each individual (i.e., the difference in colour between the warts and the dorsum), rib response time (i.e., the time needed for the ribs to emerge in response to a standardised stimulus), body size, and locomotor performance in males and females in either their aquatic or terrestrial stage. I also conducted a field experiment to determine whether predators more frequently attacked plasticine models with conspicuous or inconspicuous warts.I found that wart colour saliency functions as a decoy, attracting predator attacks towards this well‐protected body part. Plus, many of the antipredator defences studied, namely the number of warts, their colour saliency, rib response time, body size, and locomotor performance, were interrelated.Accordingly, more salient warts indicated a faster rib response, suggesting that these defences are coordinated with each other. Plus, locomotion was considerably slower in the terrestrial than in the aquatic stage. Moreover, warts were more salient, and thus more efficient attracting predator attacks, in newts in the slower terrestrial stage. However, rib response was faster in the aquatic stage, which coincides with the newt's activity peak, and therefore with the height of its conspicuousness to predators. Remarkably, faster newts display less salient warts and a slower rib response, which suggests a trade‐off between both defences. Nonetheless, some of these trends are reversed in females, among which faster individuals also display a faster rib response. This could be a likely consequence of reduced predation pressure.These results further the understanding of how prey integrate and tune multiple antipredator defences according to factors that influence predation pressure, such as sex and life stage. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
50. Deriving spatially explicit direct and indirect interaction networks from animal movement data.
- Author
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Yang, Anni, Wilber, Mark Q., Manlove, Kezia R., Miller, Ryan S., Boughton, Raoul, Beasley, James, Northrup, Joseph, VerCauteren, Kurt C., Wittemyer, George, and Pepin, Kim
- Subjects
AFRICAN swine fever ,ANIMAL mechanics ,CHRONIC wasting disease ,GLOBAL Positioning System ,MULE deer ,WILD boar ,ANIMAL tracks ,SWINE farms - Abstract
Quantifying spatiotemporally explicit interactions within animal populations facilitates the understanding of social structure and its relationship with ecological processes. Data from animal tracking technologies (Global Positioning Systems ["GPS"]) can circumvent longstanding challenges in the estimation of spatiotemporally explicit interactions, but the discrete nature and coarse temporal resolution of data mean that ephemeral interactions that occur between consecutive GPS locations go undetected. Here, we developed a method to quantify individual and spatial patterns of interaction using continuous‐time movement models (CTMMs) fit to GPS tracking data. We first applied CTMMs to infer the full movement trajectories at an arbitrarily fine temporal scale before estimating interactions, thus allowing inference of interactions occurring between observed GPS locations. Our framework then infers indirect interactions—individuals occurring at the same location, but at different times—while allowing the identification of indirect interactions to vary with ecological context based on CTMM outputs. We assessed the performance of our new method using simulations and illustrated its implementation by deriving disease‐relevant interaction networks for two behaviorally differentiated species, wild pigs (Sus scrofa) that can host African Swine Fever and mule deer (Odocoileus hemionus) that can host chronic wasting disease. Simulations showed that interactions derived from observed GPS data can be substantially underestimated when temporal resolution of movement data exceeds 30‐min intervals. Empirical application suggested that underestimation occurred in both interaction rates and their spatial distributions. CTMM‐Interaction method, which can introduce uncertainties, recovered majority of true interactions. Our method leverages advances in movement ecology to quantify fine‐scale spatiotemporal interactions between individuals from lower temporal resolution GPS data. It can be leveraged to infer dynamic social networks, transmission potential in disease systems, consumer–resource interactions, information sharing, and beyond. The method also sets the stage for future predictive models linking observed spatiotemporal interaction patterns to environmental drivers. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
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