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Allergo journal international 30(5), 155-168 (2021). doi:10.1007/s40629-021-00178-2, Published by Urban & Vogel, München

The main objective of this study is the evaluation of RPPW anaerobic digestion feasibility at laboratory scale under Mesophilic condition. The experiment is conducted using a two-stage biofilm digester of 5 L capacity with mobile support material. Anaerobic treatment of wastewater from recycled pulp and paper industry in Morocco was tested using a laboratory-scale anaerobic biofilm digester that operated under mesophilic conditions over a 70-day. Chemical oxygen demand (COD) efficiency, volatile and total solid (VS, TS) elimination of the substrate during the process were: 78%, 52% and 48% respectively. The system was stable throughout its operating cycle with an optimum pH (7.24), alkalinity (1750 mg CaCO3/L) and a volatile fatty acid value (760 mg/L). The experimental daily biogas production measured reaches a value of 5 L/day with a composition of 71% methane, 27.6% carbon dioxide, 0.2 oxygen and 7713 ppm of the H2S. The study results show that the anaerobic biofilm reactor is a suitable technique for recycled pulp and paper wastewater (RPPW) treatment. The reactor shows high performances in terms of process stability, removal efficiency (> 70%) and biogas production. Anaerobic digestion is an efficient waste treatment technology that uses natural anaerobic decomposition to reduce the volume of waste while producing biogas. However, research is needed to strengthen microbial metabolism, biochemistry and the functioning of the rector to improve biogas production. The RPPW AD experiment with biofilm digester technology was stable throughout the operation period. The digester knows an overloaded in the last phase of the experiment which leads to an inhibition of biogas production.

WOS: 000462022300057 PubMed: 30474775 A newly identified ligninolytic Rhodococcus strain (Rhodococcus sp. T1) was isolated from forestry wastes (Trabzon/Turkey). The DyP type peroxidase of Rhodococcus sp. T1 (DyPT1) was cloned, characterized and paper treated for industrial applications. Molecular weight of the protein was about 38kDa. The kinetic parameters were 0.94mM and 1417.53 mu mol/min/mg for Km and Vmax, respectively. The enzyme was active at the temperature range of 25-65 degrees C and optimum temperature was 35 degrees C, enzyme was stable up to 6 days at room temperature. Optimum pH of the DyPT1 was 4.0 and it was stable between pH 4.0-6.0 up to 8 days at room temperature. Effects of some metal ions, Hemin, and some chemical agents on DyPT1 were determined. Hemin has implemented protective effects on the stability and the activity of the enzyme in long time periods when added into growing medium. DyPT1 was applied to eucalyptus kraft pulp for analyzing the bleaching efficiency, physical and optical tests of the manufuctared paper were carried out. Application of lignin peroxidase to kraft pulp caused a decrease of 5.2 units for kappa number and an increase from 52.05 to 64.18% in the delignification rate. Karadeniz Technical University Research Foundation [FBA-2015-5182] This study was financially supported by Karadeniz Technical University Research Foundation (Project No: FBA-2015-5182).

Abstract Mechanical stimuli play important roles on the growth, development, and behavior of tissue. A simple and novel paper-based in vitro tissue chip was developed that can deliver two types of mechanical stimuli—local compression and shear flow—in a programmed manner. Rat vascular endothelial cells (RVECs) were patterned on collagen-coated nitrocellulose paper to create a tissue chip. Localized compression and shear flow were introduced by simply tapping and bending the paper chip in a programmed manner, utilizing an inexpensive servo motor controlled by an Arduino microcontroller and powered by batteries. All electrical compartments and a paper-based tissue chip were enclosed in a single 3D-printed enclosure, allowing the whole device to be independently placed within an incubator. This simple device effectively simulated in vivo conditions and induced successful RVEC migration in as early as 5 h. The developed device provides an inexpensive and flexible alternative for delivering mechanical stimuli to other in vitro tissue models. Graphical abstract

This study determined the effects of a static liquid culture system on shoot regeneration from citrus epicotyl explants. A mixture-amount experiment was used to determine the effects of zeatin riboside (ZR), 6-benzylaminopurine (BA), and indole-3-acetic acid (IAA) on two citrus types—citrange (Citrus sinensis ‘Washington’ L. Osbeck. × Poncirus trifoliata L. Raf var. Carrizo) and sweet orange (Citrus sinensis L. Osbeck var. ‘Ridge Pineapple’). A liquid culture system comprising a Petri dish, cellulose filter paper, and liquid culture medium was used. Shoot regeneration experiments were conducted over 6 wk that included 2 wk in the dark followed by 4 wk in the light. Three responses were measured: (1) number of explants forming buds and/or shoots, (2) number of explants with shoots > 2 mm, and (3) overall explant and shoot quality. The effects of paper disc number, liquid medium volume, and explant size on shoot regeneration were determined. High-quality shoots were produced from explants cultured in 5.25 to 12 mL medium volume and explant sizes ranging from 2 to 15 mm. The effects of the plant growth regulators were similar for the two citrus types and were as follows: (1) use of ZR or BA resulted in high-quality shoot production; (2) ZR and BA were not synergistic; (3) culture in 20 μM ZR resulted in the highest shoot production; (4) BA and IAA were strongly synergistic, with the greatest production with BA when IAA was included in the mixture; and (5) ZR and IAA were antagonistic, particularly with Ridge Pineapple.

The incidence of flavivirus infections has increased dramatically in recent decades in tropical and sub-tropical areas worldwide, affecting hundreds of millions of people each year. Dengue viruses are typically transmitted by mosquitoes and can cause a wide range of symptoms from flu-like fever to organ impairment and death. Although conventional diagnostic tests can provide early diagnosis of acute dengue infections, access to these tests is often limited in developing countries. Consequently, there is an urgent need to develop affordable, simple, rapid, and robust diagnostic tools that can be used at 'Point of Care' settings. Early diagnosis is crucial to improve patient management and reduce the risk of complications. In the present study, a novel laser-cut device made of glass-fiber paper was designed and tested for the detection of the dengue Non Structural 1 (NS1) viral protein and specific IgM in blood and plasma. The device, called PAD, was able to detect around 25 ng/mL of NS1 protein in various sample types in 8 minutes, following a few simple steps. The PAD was also able to detect specific IgM in human plasmas in less than 10 minutes. The PAD appears to have all the potential to assist health workers in early diagnosis of dengue fever or other tropical fevers caused by flaviviruses.

It is commonly hypothesized that scientists are more likely to engage in data falsification and fabrication when they are subject to pressures to publish, when they are not restrained by forms of social control, when they work in countries lacking policies to tackle scientific misconduct, and when they are male. Evidence to test these hypotheses, however, is inconclusive due to the difficulties of obtaining unbiased data. Here we report a pre-registered test of these four hypotheses, conducted on papers that were identified in a previous study as containing problematic image duplications through a systematic screening of the journal PLoS ONE. Image duplications were classified into three categories based on their complexity, with category 1 being most likely to reflect unintentional error and category 3 being most likely to reflect intentional fabrication. We tested multiple parameters connected to the hypotheses above with a matched-control paradigm, by collecting two controls for each paper containing duplications. Category 1 duplications were mostly not associated with any of the parameters tested, as was predicted based on the assumption that these duplications were mostly not due to misconduct. Categories 2 and 3, however, exhibited numerous statistically significant associations. Results of univariable and multivariable analyses support the hypotheses that academic culture, peer control, cash-based publication incentives and national misconduct policies might affect scientific integrity. No clear support was found for the “pressures to publish” hypothesis. Female authors were found to be equally likely to publish duplicated images compared to males. Country-level parameters generally exhibited stronger effects than individual-level parameters, because developing countries were significantly more likely to produce problematic image duplications. This suggests that promoting good research practices in all countries should be a priority for the international research integrity agenda. Electronic supplementary material The online version of this article (10.1007/s11948-018-0023-7) contains supplementary material, which is available to authorized users.

Scientific writing is an important skill in both academia and clinical practice. The skills for writing a strong scientific paper are necessary for researchers (comprising academic staff and health-care professionals). The process of a scientific research will be completed by reporting the obtained results in the form of a strong scholarly publication. Therefore, an insufficiency in scientific writing skills may lead to consequential rejections. This feature results in undesirable impact for their academic careers, promotions and credits. Although there are different types of papers, the original article is normally the outcome of experimental/epidemiological research. On the one hand, scientific writing is part of the curricula for many medical programs. On the other hand, not every physician may have adequate knowledge on formulating research results for publication adequately. Hence, the present review aimed to introduce the details of creating a strong original article for publication (especially for novice or early career researchers).

Point-of-care testing (POCT) for uropathogen detection and chemical screening has great benefits for the diagnosis of urinary tract infections (UTIs). The goal of this study was to develop a portable and inexpensive paper-based analytical device (PAD) for cultivating bacteria in situ and rapidly testing for nitrite on the same device. The PAD was fabricated using a wax printing technique to create a pattern on Whatman No. 1 filter paper, which was then combined with a cotton sheet to support bacterial growth. Nitrite detection was based on the principle of the Griess reaction, and a linear detection range of 0–1.6 mg/dL (R2 = 0.989) was obtained. Scanning electron microscopy (SEM) analysis demonstrated that the bacteria were able to grow and formed a cluster on the cellulose fibres within 2 hours. The enzyme β-glucuronidase, which is specifically produced by Escherichia coli, was able to convert the pre-immobilized 5-bromo-4-chloro-3-indolyl-β-D-glucuronide sodium salt (X-GlcA), a colourless substrate, generating a blue colour. Under optimum conditions, the proposed device allowed bacterial concentrations in the range of 104–107 colony forming units (CFU)/mL to be quantified within 6 hours. Moreover, the use of this device enables the identification of E. coli pathogens with selectivity in real urine samples. In conclusion, the PAD developed in this study for UTI screening provides a rapid, cost-effective diagnostic method for use in remote areas.

Some publishers say they are battling industrialized cheating. A Nature analysis examines the 'paper mill' problem — and how editors are trying to cope. Some publishers say they are battling industrialized cheating. A Nature analysis examines the 'paper mill' problem — and how editors are trying to cope.

In raising vegetable seedlings using cylindrical paper pots, the root substrates inside paper pots dry out fast mainly due to air spaces between paper pots created by chinks between the pot’s exterior and the holding tray. Frequent watering is necessary that contributes to the loss of nutrients by leaching during seedling production. This study was carried out to investigate the appropriate concentration of nitrogen required as a pre-planting fertilizer for growing fruit-bearing vegetable seedlings in cylindrical paper pots. For the experiment, the paper pots were made with the root substrate containing perlite (1–3 mm) and peat moss (10-mesh, 10–20% by volume) and they were placed into the 40-cell trays. The concentrations of all essential elements except nitrogen was equal in all treatments and the N concentration was adjusted to 0, 150, 250, 500, and 750 mg L−1 during the substrate formulation. Then, seedling grafts of cucumber, watermelon and tomato were transplanted and seeds of hot pepper were sown directly into the paper pots. The growth of cucumber, watermelon, and tomato plants were measured at 15, 18, and 21 days after transplanting and pepper at 5 weeks after seed sowing. The concentrations of macro-elements, pH, and EC of root substrates were analyzed every week. The pH of root substrates gradually increased during the seedling growth, but the differences in pH among N treatments is not significant. The EC in all treatments did not changed until one week after the transplanting of cucumber, watermelon, and tomato seedling grafts and 3 weeks after seed sowing of pepper. The concentration of Ca remained similar over time during the entire experimental period, but the concentration of Mg and K decreased 3 weeks after the seed sowing for the pepper growing root substrate. The concentrations of Ca, Mg, and K gradually decreased after one week of transplantation (cucumber, watermelon, and tomato). Based on the results, the optimal concentration of N required is 250 mg L−1 for tomato and 500 mg L−1 for cucumber, watermelon, and pepper respectively. In summary, the appropriate N concentration in the root substrate of paper pot is 250–500 mg L−1, and post-planting fertilization period is 1 week after transplanting for cucumber, watermelon and tomato and 3 weeks after seed sowing for hot pepper.

Switching between metabolically active and dormant states provides bacteria with protection from environmental stresses and allows rapid growth under favorable conditions. This rapid growth can be detrimental to the environment, e.g., pathogens in recreational lakes, or to industrial processes, e.g., fermentation, making it useful to quickly determine when the ratio of dormant to metabolically active bacteria changes. While a rapid increase in metabolically active bacteria can cause complications, a high number of dormant bacteria can also be problematic, since they can be more virulent and antibiotic-resistant. To determine the metabolic state of Escherichia coli and Salmonella Typhimurium, we developed two paper-based colorimetric assays. The color changes were based on oxidoreductases reducing tetrazolium salts to formazans, and alkaline phosphatases cleaving phosphates from nitrophenyl phosphate salt. Specifically, we added iodophenyl-nitrophenyl-phenyl tetrazolium salt (INT) and methylphenazinium methyl sulfate to metabolically active bacteria on paper and INT and para-nitrophenyl phosphate salt to dormant bacteria on paper. The color changed in less than 60 min and was generally visible at 103 CFU and quantifiable at 106 CFU. The color changes occurred in both bacteria, since oxidoreductases and alkaline phosphatases are common bacterial enzymes. On one hand, this feature makes the assays suitable to a wide range of applications, on the other, it requires specific capture, if only one type of bacterium is of interest. We captured Salmonella or E. coli with immobilized P22 or T4 bacteriophages on the paper, before detecting them at levels of 102 or 104 CFU, respectively. Determining the ratio of the metabolic state of bacteria or a specific bacterium at low cost and in a short time, makes this methodology useful in environmental, industrial and health care settings.

A simple, low cost and safe method using homemade filter paper-based 96-well spin plates and homemade solutions was developed for high throughput plant DNA extraction to use in molecular marker analysis. A low cost and safe method was developed for high throughput extraction of plant DNA for molecular marker analysis. In this method, we describe a simple way to prepare 96-well spin plate using filter paper, a plant material product for DNA binding. Such filter paper-based spin plate can combine with homemade non-toxic buffers for high throughput extraction of plant DNA. We confirmed that filter paper is an efficient solid-phase DNA binding material and comparable to silicon-based glass fiber filters adopted in commercial DNA extraction kits, and that plant DNA extracted by this method can be readily used as template for PCR. The efficacy of this method was also fully demonstrated by molecular marker analysis in segregating populations of tomato. Due to greatly reduced expense compared to commercial kits, this method is of great value for small labs with limited resources.

Recycled paper mill effluent (RPME) contains high levels of organic and solid compounds, causing operational problems for anaerobic biological treatment. In this study, a unique modified anaerobic inclining-baffled reactor (MAI-BR) has been developed to treat RPME at various initial chemical oxygen demand (COD) concentrations (1000–4000 mg/L) and hydraulic retention times (HRTs) (3 and 1 day). The COD removal efficiency was decreased from 96 to 83% when the organic loading rate (OLR) was increased from 0.33 to 4 g/L day. Throughout the study, a maximum methane yield of 0.25 L CH4/g COD was obtained, while the pH fluctuated in the range of 5.8 to 7.8. The reactor performance was influenced by the development and distribution of the microbial communities. Based on the next-generation sequencing (NGS) analysis, the microbial community represented a variety of bacterial phyla with significant homology to Euryarchaeota (43.06%), Planctomycetes (24.68%), Proteobacteria (21.58%), Acidobacteria (4.12%), Chloroflexi (3.14%), Firmicutes (1.12%), Bacteroidetes (1.02%), and others (1.28%). The NGS analysis showed that the microbial community was dominated by Methanosaeta concilii and Candidatus Kuenenia stuttgartiensis. This can be supported by the presence of filamentous and spherical microbes of different sizes. Additionally, methanogenic and anaerobic ammonium oxidation (ANAMMOX) microorganisms coexisted in all compartments, and these contributed to the overall degradation of substances in the RPME.

A recent study published in Human Reproduction claimed that uterine lavage offers a non-surgical, minimally invasive strategy for the recovery of human embryos from fertile women who do not want or need IVF for medical reasons but who desire preimplantation genetic testing (PGT) for embryos. To prove this hypothesis, the researchers recruited dozens of young Mexican women. The prospective oocyte donors underwent ovarian stimulation to induce the production of multiple mature oocytes. Subsequently, these women were inseminated by donor semen. A few days later, the developing embryos were collected by uterine lavage (uterine flushing) and subjected to genetic testing for aneuploidies (PGT-A). Oocyte donors with persistently elevated hCG levels, indicating the implantation of one or more embryos after uterine lavage, had to undergo uterine curettage and/or treatment with methotrexate. A critical opinion paper discussing the aforementioned study was published by De Santis and colleagues and has raised critical issues that are largely technical in nature. However, this opinion paper neglects—from our point of view—critical issues of the Mexican study regarding ethical principles and moral standards in human research. These aspects are summarized below. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10815-020-01954-9) contains supplementary material, which is available to authorized users.

Media components were optimized using two-step statistical design of experiments for enhancing endoglucanase/carboxymethyl cellulase (CMCase) production by Trichoderma reesei RUT C30. A Placket-Burman design identified cellulose concentration and pH as the most significant variables, which influenced the CMCase activity. Central composite design was employed to optimize these selected parameters. The optimal activity was obtained at cellulose concentration 19.7 g/L and pH of 7.2. Under the optimized conditions, CMCase activity was 83.63 ± 1.86 IU/mL and filter paper activity was 2.58 ± 0.2 filter paper units per mL. Enzyme productivity was higher compared to previous reports. The enzyme produced from T. reesei was concentrated and was evaluated for deinking of printed paper, which demonstrated the suitability of the enzyme for this application.

Sixty fungal cultures were isolated from agricultural soil, industrial soil, forest canopy soil having decomposed leaf litter and compost samples collected from different regions of India. Fifteen fungal cultures were selected qualitatively for the production of xylanase and cellulases and were identified employing ITS, NS and MNS primers. The enzyme cocktail consisting of 3811 IU g(-1) of xylanase and 9.9 IU g(-1) of cellulase from Trichoderma longibrachiatum MDU-6 was selected quantitatively for the deinking of diverse paper wastes. The enzyme production increased two fold when produced at tray level in comparison with flasks. The enzyme cocktail was effective in the deinking of old newspaper samples with significant removal of chromophores, phenolics and hydrophobic compounds and less sugar loss. While in case of examination papers and laser printed papers, ink removal was not very significant. Moreover, the sugar loss was significantly high in case of examination papers. The deinking results were further confirmed with FTIR analysis. Deinked newspaper pulp sample shows brightness of 52%, which was 9.6% high than its control sample. The ERIC value for deinked newspaper pulp was found to be 655.9 ppm. Thereafter, the deinked newspaper pulp was examined under light microscope after differential staining with safranin and malachite green and also examined under scanning and transmission electron microscope, which revealed fibrillation and perforation.

This study aimed to estimate the seedling performance of cylindrical paper pot (CPP) seedlings and to determine the optimal transplanting age of CPP seedlings based on seedling vigor. The studied vegetables were cucumber, tomato, paprika, and two varieties of cabbage, and the younger seedlings were obtained by shortening their raising period by 10 and 20 days with CPP. At the same transplanting age, the size of CPP seedlings was smaller pre-transplant but increased to a similar level to the plug seedlings soon after transplanting. The growth curves of leaf area and dry weight of younger CPP seedlings exhibited a steeper rise trend. The seedling vigor indicators, relative growth rate (RGR), net assimilation rate (NAR), were significantly increased in younger CPP seedlings of all vegetables, which were 10 or 20 days younger than plug seedlings. The compactness (CP) and seedling health index (SHI) of cucumber, and the leaf area ratio (LAR) and specific leaf area (SLA) of cabbage were significantly increased when shortened by 10 and 20 days, while the CP and SHI of paprika were significantly decreased when shortened by 20 days. Our results suggest that CPP may prevent the seedlings from overstretching and can provide a wild range of transplanting age choices to produce vigorous seedlings. Further, the seedling vigor indicators were successfully used to determine the transplanting age of CPP seedlings. The optimal transplanting age of CPP seedlings of tomato, paprika, and cabbage was 10 days younger than plug seedlings, whereas cucumber transplanting age could be decreased by either 10 or 20 days.

Waste disposal from paper and pulp industry is of great environmental concern. Sludge from recycled paper mills favors colonization with different microbial species due to its chemical composition. In this environment, the microbiota can express enzymes that hydrolyze celluloses and hemicelluloses, such as cellulases, β-glucosidases, and xylanases. Understanding microbiota living in such disposal may give directions to what kind of enzymes or bioproducts may be possible to obtain from this microorganism and how to deal with the waste during the process. We have accessed microbial community associated with two steps in the recycled paper sludge generation by high-throughput DNA sequencing: fibrous residue, and wastewater sludge. Bacteroidetes, Proteobacteria and Firmicutes phyla represented more than 96% of the total. From the eukaryote perspective, Vorticella was the most frequent in fibrous residue samples while Acanthamoeba was the most common on wastewater sludge samples. Among the isolates cellulase activity was detectable only from fungi isolates. Half of the bacterial isolates presented xylanase activity, and most of them in high level of activity. Both a metabarcoding and culturing approaches are valuable tools for enzymatic screening in industrial waste disposal.

Different types of pulp and paper sludge were used as raw materials for the production of a cocktail of lignocellulolytic enzymes of Trichoderma reesei RUT C-30 (T. reesei RUT C-30). The fungus were grown in pellets to produce cellulases (carbomethylcellulase, β-glucosidase) and hemicellulases (xylanase, β-xylosidase) in three types of sludge: primary (PS), secondary (SS) and mixed sludge (MS). The highest carbomethylcellulase activities obtained after 7 days of fermentation were 7.3, 4.8, and 1.5 IU/ml in MS, SS, and PS, respectively. Sludge modification such as the mixing SS and PS at 1:1 (v/v) ratio, the addition of ammonium sulfate as an inorganic nitrogen source, and the increase of the solids content were shown to improve enzyme production. The crude enzyme mixture obtained from the sludge samples showed a synergistic effect to hydrolyze various biomasses into monosugars. The tested biomasses included highly purified CMC, xylan from birch wood and lignocellulosic materials (corn stover and primary pulp and paper sludge). The addition of a surfactant (polysorbate 20) to the enzyme cocktail enhanced the saccharification efficiency of the sludge, in particular the hydrolysis of the corn stover which contains lignin. The obtained results contribute to the assessment of the feasibility of on-site low cost enzyme production at paper mills generating the sludge, or for neighboring or local biorefineries.

A process has previously been optimized for production of lactic acid from recycled paper sludge (RPS), the ultimate solid waste obtained in the wastewater treatment plant of a local paper recycling mill. In this work, both separate hydrolysis and fermentation (SHF) and simultaneous saccharification and fermentation (SSF) processes were improved under batch mode in bench-scale bioreactor. The use of bioreactor was advantageous, providing higher conversion rates, together with increased yield. By running SSF in bioreactor, 73.2 g L−1 of lactic acid has been produced by Lactobacillus rhamnosus ATCC 7469 from 179 g L−1 RPS, corresponding to 76 % of maximum theoretical yield. Further process intensification, with improved kinetics and final product concentration, was achieved by applying a pulsed fed-batch strategy. With six pulsed additions of RPS (40 g at each 5 h), 108.2 g L−1 of lactic acid was produced (after 120 h, corresponding to 62 % yield). This achievement contributes to make more realistic the large-scale upgrading of RPS, a waste raw material exhibiting negative cost.

Every day, pulp and paper mills in the USA discharge millions of liters of wastewater. Primary and secondary treatment of this wastewater often enriches it with phosphorus, resulting in uncontrolled eutrophication of receiving water bodies. A new method of tertiary wastewater treatment uses controlled growth of algae in a photobioreactor to sequester phosphorus into algal biomass, which is then harvested. This typically requires addition of a nitrogen fertilizer (nitrate, ammonium, or urea) to the water. We show on the laboratory scale that chitin can be used as an alternative source of nitrogen for the tertiary treatment of pulp mill wastewater using algae. We demonstrate that phosphorus can be efficiently removed from pulp wastewater using algae and chitin. Furthermore, phosphorus removal with chitin did not result in an increase in dissolved nitrogen in the wastewater because it is insoluble, unlike conventional nitrogen fertilizers. Despite its insolubility, it has recently been found that many diverse algae and cyanobacteria can use it as a source of nitrogen. Chitin has many advantages over conventional nitrogen fertilizers for use in wastewater treatment technologies. It is the second-most abundant natural polymer and is a waste product of the shellfish industry. Chitin is sustainable, inexpensive, and carbon neutral. Thus, chitin improves the sustainability and carbon footprints associated with water treatment, while the production of commercially attractive algal biomass helps to offset costs associated with the water treatment system itself.

There is a need for large-scale, longitudinal studies to determine the mechanisms by which the gut microbiome and its interactions with the host affect human health and disease. Current methods for profiling the microbiome typically utilize next-generation sequencing applications that are expensive, slow, and complex. Here, we present a synthetic biology platform for affordable, on-demand, and simple analysis of microbiome samples using RNA toehold switch sensors in paper-based, cell-free reactions. We demonstrate species-specific detection of mRNAs from 10 different bacteria that affect human health and four clinically relevant host biomarkers. We develop a method to quantify mRNA using our toehold sensors and validate our platform on clinical stool samples by comparison to RT-qPCR. We further highlight the potential clinical utility of the platform by showing that it can be used to rapidly and inexpensively detect toxin mRNA in the diagnosis of Clostridium difficile infections., National Institutes of Health (U.S.) (Grant T32-DK007191)

Temperature is a critical extrinsic physical parameter that determines cell fate. Hyperthermia therapy has become an efficient treatment for tumor ablation. To understand the response of tumor cells under thermal shocks, we present a paper-based photothermal array that can be conveniently coupled with commercial 96-well cell culture plates. This paper chip device was fabricated in one step using Parafilm® and Kimwipers® based on a heat lamination strategy. Liquid was completely adsorbed and confined within the cellulose fibres of hydrophilic regions. Then, Prussian blue nanoparticles (PB NPs) as the photothermal initiator were introduced into the loading wells, and thermal energy was generated via near infrared (NIR) laser irradiation. After assembling the paper device with a 96-well plate, the temperature of each well could be individually controlled by varying the loading amount of PB NPs and laser irradiation time. As a proof-of-concept study, the effects of local thermal shocks on HeLa cells were investigated using MTT cell viability assay and Live/Dead cell staining. The variation of cell viability could be monitored in situ with controllable temperature elevation. The proposed paper photothermal array loaded with thermal initiators represents an enabling tool for investigating the hyperthermia responses of biological cells. Moreover, the facile fabrication technique for paper patterning is advantageous for customizing high-throughput microfluidic paper-based analytical devices (μPADs) with extremely low cost.

Division of labor in social groups can be influenced by differential nutrition. Consumption of more food or higher-quality food often affects individuals’ capacities for reproduction. In social insects, nutrients consumed during immature (e.g., larval) stages often affect adult reproductive capacity, but adult nutrition may also impact reproductive status. This study tested whether ovary development, an indicator of reproductive status, corresponded to higher trophic-level feeding for adults in the primitively eusocial paper wasp Mischocyttarus mastigophorus. Our main prediction was that females’ ovary development would correlate positively with evidence of feeding at higher trophic levels, as indicated by stable isotope ratios of nitrogen (δ15N) and carbon (δ13C). We first asked whether isotope ratios of mature females co-varied with ovary development. δ15N values were higher for mature females with better-developed ovaries, as expected if they fed on a diet richer in animal tissue. There was a negative relationship of δ13C with ovary development in mature females, as would be expected if females with developed ovaries had higher body lipid stores. To test for evidence of nutritional biasing of caste during immature development, we measured changes in isotope ratios across pupal development leading up to early adulthood (i.e., immediately before and after adult eclosion). The δ15N and δ13C values for mature pupae were similar to those of newly emerged adults and to those of mature adults lacking developed ovaries. In contrast, mature females with developed ovaries showed N-isotope signatures of a more prey-based diet and C-isotope signatures of elevated lipid content. We conclude the N and C isotopic signatures of ovary-developed mature females diverged from their levels at the end of immature development. The findings suggest reproductive caste status was associated with differences in nutrient acquisition and reflects differences in consumption of animal-derived versus plant-based foods during adulthood. Pre-adult nutrition is known to affect caste development, and thereby influence division of labor, in diverse insect societies. In temperate independent-founding (IF) paper wasps, the effects of larval nutrition on adult caste may reflect adaptations for overwintering and diapause by reproductive females. We asked whether adult nutritional content showed caste-related trophic differences in the Neotropical IF paper wasp Mischocyttarus mastigophorus. Previous studies suggested interactions among adult nest-mates affected food sharing and caused biased nutrient flow within colonies. Our data suggest adult nutrition affected reproductive physiology. We propose this pattern may be widespread in tropical IF paper wasps, where opportunities for adult reproductive plasticity are favored by long colony cycles and relatively aseasonal nest founding.

This Position Paper was prepared by members of the Task Force on Global Food Security of the International Society for Plant Pathology. An objective approach is proposed to the assessment of the potential of genetic modification (GM) to reduce the impact of crop diseases. \ud \ud The addition of GM to the plant breeder’s conventional toolbox facilitates gene-by-gene introduction into breeding programmes of well defined characters, while also allowing access to genes from a greatly extended range of organisms. The current status of GM crops is outlined. GM could make an additional contribution to food security but its potential has been controversial, sometimes because of fixed views that GM is unnatural and risky. These have no factual basis: GM technology, where adopted, is widely regulated and no evidence has been reported of adverse consequences for human health. \ud \ud The potential benefits of GM could be particularly valuable for the developing world but there are numerous constraints. These include cost, inadequate seed supply systems, reluctance to adopt unfamiliar technology, concern about markets, inadequacy of local regulatory systems, mismatch between research and growers’ needs, and limited technical resources. The lower cost of new gene-editing methods should open the practice of GM beyond multinational corporations. As yet there are few examples of utilization of GM-based resistance to plant diseases.\ud \ud Two cases, papaya ringspot virus and banana xanthomonas wilt, are outlined. In the developing world there are many more potential cases whose progress is prevented by the absence of adequate biosafety regulation. \ud \ud It is concluded that there is untapped potential for using GM to introduce disease resistance. An objective approach to mobilizing this potential is recommended, to address the severe impact of plant disease on food security.

paper-based analytical device (μPAD) for in situ rapid colorimetric detection of microorganisms in environmental water samples. We fabricated the μPAD with the wax printing method at curing conditions of 100°C for 7 seconds. For quick bacterial detection, we modified the catalase test with Fenton’s reaction as a colorimetric biochemical reaction. This modified catalase test provided a color indicator according to the concentration of Escherichia coli (E. coli, XL-1 Blue strain). All of the image data from the detection chamber of the μPAD was analyzed at the precision of 300 pixels for each color space component (i.e., hue, saturation, and value in HSV color). In addition, environmental samples were tested with our μPAD, and the data were fitted in the range of colorimetric reference chart for E. coli sample testing.

The high cost, complexity and reliance on electricity, specialized equipment and supplies associated with conventional diagnostic methods limit the scope and sustainability of newborn screening for sickle cell disease (SCD) in sub-Saharan Africa and other resource-limited areas worldwide. Here we describe the development of a simple, low-cost, rapid, equipment- and electricity-free paper-based test capable of detecting sickle hemoglobin (HbS) in newborn blood samples with a limit of detection of 2% HbS. We validated this newborn paper-based test in a cohort of 159 newborns at an obstetric hospital in Cabinda, Angola. Newborn screening results using the paper-based test were compared to conventional isoelectric focusing (IEF). The test detected the presence of HbS with 81.8% sensitivity and 83.3% specificity, and identified SCD newborns with 100.0% sensitivity and 70.7% specificity. The use of the paper-based test in a two-stage newborn screening process could have excluded about 70% of all newborns from expensive confirmatory testing by IEF, without missing any of the SCD newborns in the studied cohort. This study demonstrates the potential utility of the newborn paper-based test for reducing the overall cost of screening newborns for SCD and thus increasing the practicality of universal newborn SCD screening programs in resource-limited settings.

Inter-specific variation in the occurrence of individual recognition (IR) has mostly been examined in species that differ with respect to two critical conditions necessary for such ability: presence of complex social behaviours and sender’s distinctiveness. However, variation in IR when species share such conditions is lesser known. We tested for IR in the paper wasp Polistes versicolor and compared the results with published information on IR in Polistes fuscatus. Both species have a flexible nest-founding behaviour and form dominance hierarchies. Additionally, both have individually distinctive facial patterns. P. versicolor faces are highly variable, and they do not appear to be associated with individual quality, consistent with the role as cues in IR. However, the wasps did not discriminate between nestmates with familiar and unfamiliar faces. Besides, wasps did not discriminate between familiar and unfamiliar social partners. Familiar discrimination (discrimination of individuals based on prior social interactions) is considered the first stage toward IR; therefore, P. versicolor wasps, unlike P. fuscatus, lack the ability for IR. Our results suggest that the high variation in colour pattern may not be a good proxy for the occurrence of IR in paper wasps and that neutral variation may be an underestimated factor promoting phenotypic variability. High inter-individual phenotypic variability in primitively eusocial paper wasps has sometimes been considered to be a result of selection for efficient individual identity signalling, especially because senders may benefit from being individually recognised. P. versicolor paper wasp females have highly variable inter-individual facial patterns. However, we demonstrated that they lack individual recognition. After excluding some potentially confounding hypothesis, we conclude that selection for efficient individual identity signalling is not the only factor promoting phenotypic variability in paper wasps and that at least in some species, neutral variation may play a role.

This study is aimed at assessing the biobleaching activity of fungal xylanase on paper pulp isolated from Tirumala forest, Eastern Ghats of India. Of the 98 fungal isolates obtained after initial screening, eight isolates were selected and one potential strain was further cultivated under submerged fermentation for production of xylanase. The biobleaching efficiency on waste paper pulp and paper industry effluent was tested with crude enzyme. Xylanolytic activity by the chosen organism in submerged fermentation reached the maximum (981.1 U ml−1) on the 5th day of incubation. Molecular characterisation of the isolate led to its identification as Trichoderma asperellum which exhibited the production of enzyme even at alkaline pH of the culture medium. Xylanase pretreatment of paper pulp had shown reduction in the Kappa number by 4.2 points and increased brightness by 4.0 points. FTIR and SEM studies revealed loosening of pulp fibres after enzyme treatment. In conclusion, xylanase of Trichoderma asperellum was effective as a pulp biobleaching agent and the process is economical as well as eco-friendly.

Xylanases are hydrolytic enzymes which cleave the β-1, 4 backbone of the complex plant cell wall polysaccharide xylan. Xylan is the major hemicellulosic constituent found in soft and hard food. It is the next most abundant renewable polysaccharide after cellulose. Xylanases and associated debranching enzymes produced by a variety of microorganisms including bacteria, actinomycetes, yeast and fungi bring hydrolysis of hemicelluloses. Despite thorough knowledge of microbial xylanolytic systems, further studies are required to achieve a complete understanding of the mechanism of xylan degradation by xylanases produced by microorganisms and their promising use in pulp biobleaching. Cellulase-free xylanases are important in pulp biobleaching as alternatives to the use of toxic chlorinated compounds because of the environmental hazards and diseases caused by the release of the adsorbable organic halogens. In this review, we have focused on the studies of structural composition of xylan in plants, their classification, sources of xylanases, extremophilic xylanases, modes of fermentation for the production of xylanases, factors affecting xylanase production, statistical approaches such as Plackett Burman, Response Surface Methodology to enhance xylanase production, purification, characterization, molecular cloning and expression. Besides this, review has focused on the microbial enzyme complex involved in the complete breakdown of xylan and the studies on xylanase regulation and their potential industrial applications with special reference to pulp biobleaching, which is directly related to increasing pulp brightness and reduction in environmental pollution.

Some researchers have their manuscripts screened for errors before they go to journals. Some researchers have their manuscripts screened for errors before they go to journals.

Ant queen pheromones (QPs) have long been known to affect colony functioning. In many species, QPs affect important reproductive functions such as diploid larvae sexualization and egg-laying by workers, unmated queens (gynes), or other queens. Until the 1990s, these effects were generally viewed to be the result of queen manipulation through the use of coercive or dishonest signals. However, in their seminal 1993 paper, Keller and Nonacs challenged this idea, suggesting that QPs had evolved as honest signals that informed workers and other colony members of the queen's presence and reproductive state. This paper has greatly influenced the study of ant QPs and inspired numerous attempts to identify fertility-related compounds and test their physiological and behavioral effects. In the present article, we review the literature on ant QPs in various contexts and pay special attention to the role of cuticular hydrocarbons (CHCs). Although the controversy generated by Keller and Nonacs' (Anim Behav 45:787-794, 1993) paper is currently less intensively debated, there is still no clear evidence which allows the rejection of the queen control hypothesis in favor of the queen signal hypothesis. We argue that important questions remain regarding the mode of action of QPs, and their targets which may help understanding their evolution.

Paper-based cell culture platforms have emerged as a promising approach for a myriad of biomedical applications, such as tissue engineering, disease models, cancer research, biotechnology, high-throughput testing, biosensing, and diagnostics. Paper enables the generation of highly flexible, biocompatible, inexpensive, porous, and three-dimensional (3D) constructs and devices. These systems have been used to culture mammalian cells, bacteria, algae, and fungi. Studies have shown that paper is an exceptional material for applications in life sciences, materials sciences, engineering, and medicine. Paper has been employed for creating biomimetic cell culture environments by folding or stacking it into the desired 3D shapes and structures. This review discusses the use of paper-based platforms for cellular applications and provides a diverse range of examples.

This study is the first comprehensive investigation of enzyme-producing bacteria isolated from four sludge samples (primary, secondary, press and machine) collected in a Kraft paper mill. Overall, 41 strains encompassing 11 different genera were identified by 16S rRNA gene analysis and biochemical testing. Both biodiversity and enzymatic activities were correlated with sludge composition. Press sludge hosted the largest variety of bacterial strains and enzymatic activities, which included hydrolytic enzymes and ligninolytic enzymes. In contrast, strains isolated from secondary sludge were devoid of several enzymatic activities. Most strains were found to metabolize Kraft liquor at its alkaline pH and to decolorize industrial lignin-mimicking dyes. Resistance to lignin or the ability to metabolize this substrate is a prerequisite to survival in any paper mill sludge type. We demonstrate here that the bacterial strains found in a typical Kraft paper mill represent a source of potential novel enzymes for both industrial applications and bioremediation. Electronic supplementary material The online version of this article (doi:10.1186/s40064-016-3147-8) contains supplementary material, which is available to authorized users.

Analyzing electrolytes in urine, such as sodium, potassium, calcium, chloride, and nitrite, has significant diagnostic value in detecting various conditions, such as kidney disorder, urinary stone disease, urinary tract infection, and cystic fibrosis. Ideally, by regularly monitoring these ions with the convenience of dipsticks and portable tools, such as cellphones, informed decision making is possible to control the consumption of these ions. Here, we report a paper-based sensor for measuring the concentration of sodium, potassium, calcium, chloride, and nitrite in urine, accurately quantified using a smartphone-enabled platform. By testing the device with both Tris buffer and artificial urine containing a wide range of electrolyte concentrations, we demonstrate that the proposed device can be used for detecting potassium, calcium, chloride, and nitrite within the whole physiological range of concentrations, and for binary quantification of sodium concentration.

A novel strategy for the direct analysis of non-conjugated steroids in water using paper spray mass spectrometry (PS-MS) has been developed. PS-MS was used in the identification and quantification of non-conjugated (free) steroids in fish tank water samples. Data shown herein indicates that individual amounts of free steroids can be detected in aqua as low as; 0.17 ng/µL, 0.039 ng/µL, 0.43 ng/µL, 0.0076 ng/µL for aldosterone, corticosterone, cortisol, and β-estrone, respectively, and with an average relative standard deviation of ca. in aqua.

Patients with multiple myeloma (MM) seem to be at increased risk for more severe COVID-19 infection and associated complications due to their immunocompromised state, the older age and comorbidities. The European Myeloma Network has provided an expert consensus statement in order to guide therapeutic decisions in the era of the COVID-19 pandemic. Patient education for personal hygiene and social distancing measures, along with treatment individualization, telemedicine and continuous surveillance for early diagnosis of COVID-19 are essential. In countries or local communities where COVID-19 infection is widely spread, MM patients should have a PCR test of nasopharyngeal swab for SARS-CoV-2 before hospital admission, starting a new treatment line, cell apheresis or ASCT in order to avoid ward or community spread and infections. Oral agent-based regimens should be considered, especially for the elderly and frail patients with standard risk disease, whereas de-intensified regimens for dexamethasone, bortezomib, carfilzomib and daratumumab should be used based on patient risk and response. Treatment initiation should not be postponed for patients with end organ damage, myeloma emergencies and aggressive relapses. Autologous (and especially allogeneic) transplantation should be delayed and extended induction should be administered, especially in standard risk patients and those with adequate MM response to induction. Watchful waiting should be considered for standard risk relapsed patients with low tumor burden, and slow biochemical relapses. The conduction of clinical trials should continue with appropriate adaptations to the current circumstances. Patients with MM and symptomatic COVID-19 disease should interrupt anti-myeloma treatment until recovery. For patients with positive PCR test for SARS-CoV-2, but with no symptoms for COVID-19, a 14-day quarantine should be considered if myeloma-related events allow the delay of treatment. The need for surveillance for drug interactions due to polypharmacy is highlighted. The participation in international COVID-19 cancer registries is greatly encouraged.

Research papers and preprints are appearing every day as researchers worldwide respond to the outbreak. Research papers and preprints are appearing every day as researchers worldwide respond to the outbreak.

Free-falling paper shapes exhibit rich, complex and varied behaviours that are extremely challenging to model analytically. Physical experimentation aids in system understanding, but is time-consuming, sensitive to initial conditions and reliant on subjective visual behavioural classification. In this study, robotics, computer vision and machine learning are used to autonomously fabricate, drop, analyse and classify the behaviours of hundreds of shapes. The system is validated by reproducing results for falling discs, which exhibit four falling styles: tumbling, chaotic, steady and periodic. A previously determined mapping from a non-dimensional parameter space to behaviour groups is shown to be consistent with these new experiments for tumbling and chaotic behaviours. However, steady or periodic behaviours are observed in previously unseen areas of the parameter space. More complex hexagon, square and cross shapes are investigated, showing that the non-dimensional parameter space generalizes to these shapes. The system highlights the potential of robotics for the investigation of complex physical systems, of which falling paper is one example, and provides a template for future investigation of such systems. The dynamics of paper shapes in free fall are still not fully understood, despite being discussed for more than 150 years. Collecting large amounts of data has the potential to give us new insights and a robotics system could generate and analyse data in large quantities.

Microfluidic paper-based analytical devices (µPADs) have provided a breakthrough in portable and low-cost point-of-care diagnostics. Despite their significant scope, the complexity of fabrication and reliance on expensive and sophisticated tools, have limited their outreach and possibility of commercialization. Herein, we report for the first time, a facile method to fabricate µPADs using a commonly available laser printer which drastically reduces the cost and complexity of fabrication. Toner ink is used to pattern the µPADs by printing, without modifying any factory configuration of the laser printer. Hydrophobic barriers are created by heating the patterned paper which melts the toner ink, facilitating its wicking into the cross-section of the substrate. Further, we demonstrate the utilization of the fabricated device by performing two assays. The proposed technique provides a versatile platform for rapid prototyping of µPADs with significant prospect in both developed and resource constrained region.

In this paper we report a cheap, paper electronics based solid state gas sensor to detect NH3 gas selectively with a detection capability of better than 1 ppm. The sensor uses perovskite halide CH3NH3PbI3 (MAPI) as the active sensor material grown on a paper. This paper based sensor works at room temperature. The current through the paper sensor increases by one order on exposure to only 10 ppm NH3 gas. The calibrated sensitivity is ~55% for 1 ppm of NH3 gas in Nitrogen or Air. The current noise limited resolution estimated to be ~10 ppb. This work establishes perovskite halide as a new solid state gas sensing material that can reach sub ppm sensitivity using simple paper electronics. Use of paper and also solution method used to grow the active material makes the sensor cost effective and easy to manufacture. This type of disposable high sensitive paper sensor can be used for detection of NH3 as a marker in exhaled breathes for non-invasive diagnosis. The sensor formed on the paper, since it supports unheated operation, needs less than few nanowatt power for its operation.

This is an invited discussion of review paper “Nonparametric Bayesian Inference in Applications” by Peter Muller, Fernando A. Quintana and Garritt L. Page.

Iron deficiency that is induced by high soil pH is a major factor affecting plant growth in calcareous soils and in some areas that have been reclaimed following industrial activities. Since the effects of high soil pH commonly involve Fe deficiency, in this study, we examined whether Fe provided to part of the root system exposed to low pH would alleviate high pH stress in paper birch (Betula papyrifera), trembling aspen (Populus tremuloides) and red-osier dogwood (Cornus stolonifera) seedlings. The plants were grown in a controlled environment growth room in mineral nutrient solution at pH 5 and 9 and provided with either 0 or 40 µM Fe in a split-root system for 8 weeks. At the end of the treatments, plant dry weights, net photosynthesis, transpiration rates, root ferric-chelate reductase activity, and leaf chlorophyll concentrations were measured, and elemental analyses were carried out in young leaves. The results demonstrated high root zone pH affected Fe, P and Zn concentrations in young leaves. In the three considered species, plants with part of their root system exposed to pH 5 had higher dry weights, net photosynthesis, and transpiration rates compared with the plants with the whole root system immersed in pH 9 solution. High root zone pH reduced photosynthesis, transpiration rates, leaf chlorophyll concentrations and the uptake of Fe, P, and Zn in plants. Partial exposure of the root system to low pH and Fe supply reduced leaf chlorosis and partly alleviated the high pH stress in the studied plants by improving Fe uptake, but did not alleviate root growth reductions.

We examine the number of citations in 10 highly cited retracted papers, and compare their current pre- and post-citation values. We offer some possible explanations for the continued citation of these retracted papers, and point out some of the risks that may be involved for the communities that continue to cite them. In general, retracted papers should not be cited, but often there is fault with unclear publisher web-sites, the existence of pirate web-sites or sites that display copies of the unretracted version of the paper, or even the insistent citation of a retracted paper because the results remain valid, or because the authors (most likely) refuse to accept the retracted status of that paper, or continue to believe that the core findings of the study remain valid.

The article by Muller, Quintana, and Page reviews a variety of Bayesian nonparametric models and demonstrates them in a few applications. They emphasize applications in spatial data on which our discussion focuses as well. In particular, we consider two types of mixture models based on species sampling models (SSM) for spatial clustering and apply them to the Chilean mathematics testing score data analyzed by the authors. We conclude that only the mixture model of SSM with spatial locations as part of observations renders spatially non-overlapping clusters.

The Oxford–AstraZeneca partnership is the first major developer to publish detailed data from phase III trials. The Oxford–AstraZeneca partnership is the first major developer to publish detailed data from phase III trials.