87 results
Search Results
2. An Approach to Integrated Digital Requirements Engineering
- Author
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Duprez, Jean, primary, Paper, Pascal, additional, Fraj, Amine, additional, Royer, Laurent, additional, and Petteys, Becky, additional
- Published
- 2023
- Full Text
- View/download PDF
3. Effects of elevated <scp> CO 2 </scp> on feeding responses of biological control agents of Pontederia crassipes
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M. K. Paper, T. Righetti, S. L. Raubenheimer, J. A. Coetzee, A. J. Sosa, and M. P. Hill
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Insect Science ,Ecology, Evolution, Behavior and Systematics - Published
- 2023
4. Effects of elevatedCO 2on feeding responses of biological control agents of Pontederia crassipes
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Paper, M. K., primary, Righetti, T., additional, Raubenheimer, S. L., additional, Coetzee, J. A., additional, Sosa, A. J., additional, Ripley, B. S. R., additional, and Hill, M. P., additional
- Published
- 2023
- Full Text
- View/download PDF
5. Influences of pH and substrate supply on the ratio of iron to sulfate reduction
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Theodore M. Flynn, Kathleen M. Crank, Qusheng Jin, Kenneth M. Kemner, Matthew F. Kirk, AnneMarie Lower, Maxim I. Boyanov, Ben R. Haller, Janet M. Paper, and Theodore Flynn
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Goethite ,010504 meteorology & atmospheric sciences ,Iron ,Inorganic chemistry ,iron reduction ,anoxic environments ,010502 geochemistry & geophysics ,01 natural sciences ,chemistry.chemical_compound ,sulfate reduction ,Bioreactor ,goethite ,Sulfate ,Groundwater ,Ecology, Evolution, Behavior and Systematics ,0105 earth and related environmental sciences ,General Environmental Science ,biology ,Sulfates ,Substrate (chemistry) ,Hydrogen-Ion Concentration ,biology.organism_classification ,Anoxic waters ,Iron reduction ,chemistry ,visual_art ,visual_art.visual_art_medium ,General Earth and Planetary Sciences ,Water quality ,Geobacter ,Oxidation-Reduction - Abstract
Iron reduction and sulfate reduction often occur simultaneously in anoxic systems, and where that is the case, the molar ratio between the reactions (i.e., Fe/SO42- reduced) influences their impact on water quality and carbon storage. Previous research has shown that pH and the supply of electron donors and acceptors affect that ratio, but it is unclear how their influences compare and affect one another. This study examines impacts of pH and the supply of acetate, sulfate, and goethite on the ratio of iron to sulfate reduction in semi-continuous sediment bioreactors. We examined which parameter had the greatest impact on that ratio and whether the parameter influences depended on the state of each other. Results show that pH had a greater influence than acetate supply on the ratio of iron to sulfate reduction, and that the impact of acetate supply on the ratio depended on pH. In acidic reactors (pH 6.0 media), the ratio of iron to sulfate reduction decreased from 3:1 to 2:1 as acetate supply increased (0-1 mM). In alkaline reactors (pH 7.5 media), iron and sulfate were reduced in equal proportions, regardless of acetate supply. Secondly, a comparison of experiments with and without sulfate shows that the extent of iron reduction was greater if sulfate reduction was occurring and that the effect was larger in alkaline reactors than acidic reactors. Thus, the influence of sulfate supply on iron reduction extent also depended on pH and suggests that iron reduction grows more dependent on sulfate reduction as pH increases. Our results compare well to trends in groundwater geochemistry and provide further evidence that pH is a major control on iron and sulfate reduction in systems with crystalline (oxyhydr)oxides. pH not only affects the ratio between the reactions but also the influences of other parameters on that ratio.
- Published
- 2021
6. Influences of pH and substrate supply on the ratio of iron to sulfate reduction
- Author
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Paper, Janet M., primary, Flynn, Theodore M., additional, Boyanov, Maxim I., additional, Kemner, Kenneth M., additional, Haller, Ben R., additional, Crank, Kathleen, additional, Lower, AnneMarie, additional, Jin, Qusheng, additional, and Kirk, Matthew F., additional
- Published
- 2021
- Full Text
- View/download PDF
7. Influence of pH on the balance between methanogenesis and iron reduction
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Ben R. Haller, Qusheng Jin, Ganiyat Shodunke, Colleen M. Gura, Maxim I. Boyanov, Matthew F. Kirk, Theodore M. Flynn, Janet M. Paper, and Kyle A. Marquart
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Goethite ,010504 meteorology & atmospheric sciences ,Methanogenesis ,Iron ,010502 geochemistry & geophysics ,Ferric Compounds ,01 natural sciences ,Methane ,chemistry.chemical_compound ,Bioreactors ,medicine ,Groundwater ,Ecology, Evolution, Behavior and Systematics ,0105 earth and related environmental sciences ,General Environmental Science ,Minerals ,Oxide minerals ,Bacteria ,biology ,Hydrogen-Ion Concentration ,biology.organism_classification ,Anoxic waters ,chemistry ,Environmental chemistry ,visual_art ,visual_art.visual_art_medium ,General Earth and Planetary Sciences ,Ferric ,Clay minerals ,Oxidation-Reduction ,Iron Compounds ,medicine.drug ,Geobacter - Abstract
Methanogenesis and iron reduction play major roles in determining global fluxes of greenhouse gases. Despite their importance, environmental factors that influence their interactions are poorly known. Here, we present evidence that pH significantly influences the balance between each reaction in anoxic environments that contain ferric (oxyhydr)oxide minerals. In sediment bioreactors that contained goethite as a source of ferric iron, both iron reduction and methanogenesis occurred but the balance between them varied significantly with pH. Compared to bioreactors receiving acidic media (pH 6), electron donor oxidation was 85% lower for iron reduction and 61% higher for methanogenesis in bioreactors receiving alkaline media (pH 7.5). Thus, methanogenesis displaced iron reduction considerably at alkaline pH. Geochemistry data collected from U.S. aquifers demonstrate that a similar pattern also exists on a broad spatial scale in natural settings. In contrast, in bioreactors that were not augmented with goethite, clay minerals served as the source of ferric iron and the balance between each reaction did not vary significantly with pH. We therefore conclude that pH can regulate the relative contributions of microbial iron reduction and methanogenesis to carbon fluxes from terrestrial environments. We further propose that the availability of ferric (oxyhydr)oxide minerals influences the extent to which the balance between each reaction is sensitive to pH. The results of this study advance our understanding of environmental controls on microbial methane generation and provide a basis for using pH and the occurrence of ferric minerals to refine predictions of greenhouse gas fluxes.
- Published
- 2018
8. Glucosylceramides are critical for cell‐type differentiation and organogenesis, but not for cell viability in Arabidopsis
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Amanda M. Bradley, Joseph Msanne, Kathrin Schrick, Kyle D. Luttgeharm, Janet M. Paper, Rebecca E. Cahoon, Ming Chen, Edgar B. Cahoon, Daniel L. Boyle, and Elizabeth S. Mays
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Ceramide ,biology ,Cell Survival ,Cellular differentiation ,fungi ,Mutant ,Arabidopsis ,Cell Differentiation ,Organogenesis ,Cell Biology ,Plant Science ,Golgi apparatus ,Glucosylceramides ,biology.organism_classification ,Plant cell ,Article ,Cell biology ,symbols.namesake ,chemistry.chemical_compound ,Biochemistry ,chemistry ,Genetics ,symbols ,Endomembrane system - Abstract
Glucosylceramides (GlcCer), glucose-conjugated sphingolipids, are major components of the endomembrane system and plasma membrane in most eukaryotic cells. Yet the quantitative significance and cellular functions of GlcCer are not well characterized in plants and other multi-organ eukaryotes. To address this, we examined Arabidopsis lines that were lacking or deficient in GlcCer by insertional disruption or by RNA interference (RNAi) suppression of the single gene for GlcCer synthase (GCS, At2g19880), the enzyme that catalyzes GlcCer synthesis. Null mutants for GCS (designated 'gcs-1') were viable as seedlings, albeit strongly reduced in size, and failed to develop beyond the seedling stage. Heterozygous plants harboring the insertion allele exhibited reduced transmission through the male gametophyte. Undifferentiated calli generated from gcs-1 seedlings and lacking GlcCer proliferated in a manner similar to calli from wild-type plants. However, gcs-1 calli, in contrast to wild-type calli, were unable to develop organs on differentiation media. Consistent with a role for GlcCer in organ-specific cell differentiation, calli from gcs-1 mutants formed roots and leaves on media supplemented with the glucosylated sphingosine glucopsychosine, which was readily converted to GlcCer independent of GCS. Underlying these phenotypes, gcs-1 cells had altered Golgi morphology and fewer cisternae per Golgi apparatus relative to wild-type cells, indicative of protein trafficking defects. Despite seedling lethality in the null mutant, GCS RNAi suppression lines with ≤2% of wild-type GlcCer levels were viable and fertile. Collectively, these results indicate that GlcCer are essential for cell-type differentiation and organogenesis, and plant cells produce amounts of GlcCer in excess of that required for normal development.
- Published
- 2015
9. Influence of pH on the balance between methanogenesis and iron reduction
- Author
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Marquart, Kyle A., primary, Haller, Ben R., additional, Paper, Janet M., additional, Flynn, Theodore M., additional, Boyanov, Maxim I., additional, Shodunke, Ganiyat, additional, Gura, Colleen, additional, Jin, Qusheng, additional, and Kirk, Matthew F., additional
- Published
- 2018
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10. Property Model Methodology: A Landing Gear Operational Use Case
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Micouin, Patrice, primary, Fabre, Louis, additional, Becquet, Roland, additional, Paper, Pascal, additional, Razafimahefa, Thomas, additional, and Guérin, François, additional
- Published
- 2018
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11. Comparison of the antiinflammatory effects ofDrosera rotundifolia andDrosera madagascariensis in the HET-CAM assay
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Liselotte Krenn, Michaela Kremser, Elisabeth Karall, and D. H. Paper
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Drosera madagascariensis ,Drosera ,Flavonoid ,Chick Embryo ,Pharmacognosy ,law.invention ,chemistry.chemical_compound ,Allantois ,law ,Botany ,Animals ,Humans ,Inflammation ,Pharmacology ,chemistry.chemical_classification ,Dose-Response Relationship, Drug ,biology ,Traditional medicine ,Plant Extracts ,Anti-Inflammatory Agents, Non-Steroidal ,Plant Components, Aerial ,biology.organism_classification ,Drosera rotundifolia ,chemistry ,Polyphenol ,Biological Assay ,Phytotherapy ,Ellagic acid - Abstract
The antiinflammatory effects of ethanol and aqueous extracts from Drosera rotundifolia and from Drosera madagascariensis were compared in vivo in the HET-CAM assay. Both extracts from D. rotundifolia and the ethanol extract from D. madagascariensis showed remarkable efficacy at doses of 500 microg/pellet. The inhibition of the inflammation by the extracts was stronger than that by 50 microg hydrocortisone/pellet. In contrast, there was only a very weak effect observed at a dose of 500 microg/pellet of the water extract from D. madagascariensis. The chemical analyses of the extracts showed that the effect cannot be attributed to naphthoquinones, but might be due to flavonoids. Ellagic acid obviously plays an important role in the antiangiogenic effect of the Drosera extracts.
- Published
- 2005
12. Creating Customer Focused Processes at Barnett Bank
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David Paper, Ganesh D. Bhatt, and James A. Rodger
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Process management ,Management of Technology and Innovation ,Strategy and Management ,Operations management ,Business - Published
- 1997
13. A Theoretical Framework Linking Creativity, Empowerment, and Organizational Memory
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David Paper and Jeffrey J. Johnson
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Knowledge management ,Delegation ,business.industry ,Strategy and Management ,media_common.quotation_subject ,Organizational memory ,Information technology ,Organizational commitment ,Creativity ,Management ,Human resource management ,Management of Technology and Innovation ,Customer satisfaction ,Quality (business) ,business ,Empowerment ,Construct (philosophy) ,Psychology ,ComputingMilieux_MISCELLANEOUS ,media_common - Abstract
Empowerment, creativity, and organizational memory are constructs that have been researched in MIS. While each construct has received individual attention, we have found relatively little research linking them. One of the major edicts of empowerment is delegation of decision making authority to lower-level employees. Increased authority allows employees more freedom to be creative. However, if creative thought is generated but not captured, innovative ideas may be lost. Organizational memory can capture creative ideas as they are generated so that empowered teams can draw upon positive creative experiences. We developed a theoretical model to illuminate the relationships between organizational memory, worker empowerment, and creativity. The model portrays the linkages between empowerment and creativity, creativity and organizational memory, and organizational memory and empowerment. The model was developed based on the literature in each respective area and an interview-based study concerning “empowered” systems development project teams and organizational memory. Analysis of the interview data revealed that empowered workers generate creative solutions to problems. However, creative solutions can only be used for future projects if they are somehow recorded into organizational memory. Organizations that empowered their workforce and embraced creativity reported increased customer satisfaction, waste reduction, and some quality gains. In contrast, those that did not empower reported little or no change. Organizations that recorded creative solutions to problems believe that retrieval of this information could be potentially useful for future projects. Potential challenges faced by organizations classified into each cell are also presented. This classification scheme should prove useful as a guide to organizations examining the potential benefits and pitfalls of worker empowerment and organizational memory.
- Published
- 1997
14. Becoming a partner in your healthcare
- Author
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R. Paper
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Receipt ,Service (business) ,medicine.medical_specialty ,business.industry ,media_common.quotation_subject ,Control (management) ,Hematology ,General Medicine ,Haemophilia ,medicine.disease ,Intimidation ,Quality of life (healthcare) ,Nursing ,Feeling ,Health care ,medicine ,business ,Psychiatry ,Genetics (clinical) ,media_common - Abstract
Chronic disorders such as haemophilia and von Willebrand disease can rob people of a feeling of control over their lives. Added to this is often a feeling of confusion or intimidation when dealing with the healthcare system. People may begin to feel like victims of their disorders and of the healthcare system. The healthcare system defines people who are in receipt of care as patients. The word patient comes from the Latin word patiens, which means to suffer, endure, allow, permit or undergo. Even the term implies a sense of victimization. People who become partners in their care and view the receipt and delivery of healthcare as a service wherein they are the consumer and the doctor or clinician is the provider, will feel more in control and will likely have better outcomes than people who assume the more traditional role of 'patient'.
- Published
- 2002
15. Glucosylceramides are critical for cell‐type differentiation and organogenesis, but not for cell viability in Arabidopsis
- Author
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Msanne, Joseph, primary, Chen, Ming, additional, Luttgeharm, Kyle D., additional, Bradley, Amanda M., additional, Mays, Elizabeth S., additional, Paper, Janet M., additional, Boyle, Daniel L., additional, Cahoon, Rebecca E., additional, Schrick, Kathrin, additional, and Cahoon, Edgar B., additional
- Published
- 2015
- Full Text
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16. Comparative proteomics of extracellular proteinsin vitro andin planta from the pathogenic fungusFusarium graminearum
- Author
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Paper, Janet M., primary, Scott-Craig, John S., additional, Adhikari, Neil D., additional, Cuomo, Christina A., additional, and Walton, Jonathan D., additional
- Published
- 2007
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17. Comparison of the antiinflammatory effects ofDrosera rotundifolia andDrosera madagascariensis in the HET-CAM assay
- Author
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Paper, Dietrich H., primary, Karall, Elisabeth, additional, Kremser, Michaela, additional, and Krenn, Liselotte, additional
- Published
- 2005
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18. Investigation of the antiinflammatory activity of liquid extracts of Plantago lanceolata L
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D. H. Paper, Gerhard Franz, S. Hose, and M. Marchesan
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Pharmacology ,animal structures ,Plantago ,biology ,Traditional medicine ,Sodium ,chemistry.chemical_element ,Biological activity ,Pharmacognosy ,biology.organism_classification ,medicine.disease_cause ,In vitro ,Chorioallantoic membrane ,Membrane ,chemistry ,medicine ,Irritation - Abstract
Plantago lanceolata L. extracts are used against inflammatory diseases. In this study we have demonstrated the ability of four liquid extracts of Plantago lanceolata L. to inhibit membrane irritation on the chick chorioallantoic membrane. We used a modified hen's egg chorioallantoic membrane test (HET-CAM), in which the membrane irritation was induced with sodium dodecyl sulphate. The antiinflammatory activity of the extracts was compared with the activity of some antiinflammatory active drugs. These extracts showed a potent activity in the inhibition of membrane irritation. © 1998 John Wiley & Sons, Ltd.
- Published
- 1998
19. Becoming a partner in your healthcare
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PAPER, R., primary
- Published
- 2002
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20. Business process reengineering and improvement: a comparison of US and Japanese firms
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Paper, David, primary
- Published
- 1998
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21. Investigation of the antiinflammatory activity of liquid extracts of Plantago lanceolata L.
- Author
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Marchesan, M., primary, Paper, D. H., additional, Hose, S., additional, and Franz, G., additional
- Published
- 1998
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22. Creating Customer Focused Processes at Barnett Bank
- Author
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Paper, David, primary, Bhatt, Ganesh, additional, and Rodger, James A., additional
- Published
- 1997
- Full Text
- View/download PDF
23. A Theoretical Framework Linking Creativity, Empowerment, and Organizational Memory
- Author
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Paper, David J., primary and Johnson, Jeffrey J., additional
- Published
- 1997
- Full Text
- View/download PDF
24. Defined carrageenan derivatives as angiogenesis inhibitors
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Paper, Dietrich H., primary, Vogl, Horst, additional, Franz, G., additional, and Hoffman, Richard, additional
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- 1995
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25. Age-dependent changes in tolerizability with rabbit gamma-globulin in the Biozzi high and low-responder lines of mice
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Katsuji Nakano, Short Papers, Brian H. Sabiston, and Bernhard Cinader
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Lipopolysaccharides ,Aging ,medicine.medical_specialty ,Lipopolysaccharide ,Immunology ,Age dependent ,Biology ,T-Lymphocytes, Regulatory ,law.invention ,Mice ,chemistry.chemical_compound ,Immune system ,law ,Internal medicine ,Immune Tolerance ,medicine ,Animals ,Immunology and Allergy ,B cell ,Gamma globulin ,Low responder ,Endocrinology ,medicine.anatomical_structure ,Immunization ,chemistry ,Suppressor ,Female ,gamma-Globulins - Abstract
The antibody response to rabbit gamma-globulin (RGG) of high-responder, but not of low-responder Biozzi mice decreased with age. Injection with aggregate-freed RGG reduced the response of high-responder but not of low-responder mice to subsequent injections with aggregated RGG. This reduction in the antibody response, formed by high-responder mice, decreased with increasing age; aggregate-freed RGG appeared to sensitize 6-month-old low-responder mice to a subsequent injection with aggregated RGG. When animals, not pretreated with aggregate-freed RGG, were immunized with RGG and lipopolysaccharide (LPS), the immune response was greatly enhanced. The response of both pretreated low and high responders was substantially smaller than that of corresponding animals which were not given aggregate-freed RGG, prior to immunization. LPS revealed an inhibitory effect on low-responder mice of aggregate-freed RGG, which was not detected upon immunization with heat-aggregated RGG alone. The involvement of nonspecific suppressor cells and of B cell tolerance in low-responder mice is discussed.
- Published
- 1979
26. Composition of the lymphoid cell populations from omental milky spots during the immune response in C57BL/Ka mice
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Robert V. Rouse, Bruno Kyewski, Short Paper, and Kazimir Dux
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B-Lymphocytes ,Stromal cell ,medicine.drug_class ,T-Lymphocytes ,Immunology ,Cell ,Mice, Inbred Strains ,T lymphocyte ,Biology ,Monoclonal antibody ,Mice ,medicine.anatomical_structure ,Lymphatic system ,Immune system ,Antigen ,medicine ,Animals ,Immunology and Allergy ,Cytotoxic T cell ,Female ,Lymphocytes ,Omentum - Abstract
The lymphoid cell composition of milky spots was analyzed in unprimed mice before and after i.p. immunization with sheep red blood cells. Milky spots contained surface immunoglobulin-positive B lymphocytes, and T cells of the helper and cytotoxic phenotype. After secondary antigen challenge (a) the number of lymphocytes increased up to 40-fold, (b) B and T cells were found to segregate into distinct areas in situ, and (c) lymphocytes were found to associate with I-A-negative stromal cells in vivo. These findings qualify milky spots as a peripheral lymphoid organ exhibiting a remarkable change in number and composition of lymphocytes in response to a local antigen stimulus.
- Published
- 1986
27. Requirement of H-2 heterozygosity for autoimmunity in (NZB × NZW)F1 hybrid mice
- Author
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Short Paper, Sachiko Hirose, Genjiro Ueda, Kazuo Noguchi, Takashi Okada, Iwao Sekigawa, Hidetoshi Sato, and Toshikazu Shirai
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Heterozygote ,Receptors, Antigen, T-Cell, alpha-beta ,Immunology ,Receptors, Antigen, T-Cell ,Congenic ,chemical and pharmacologic phenomena ,urologic and male genital diseases ,medicine.disease_cause ,Immunoglobulin G ,Autoimmune Diseases ,Autoimmunity ,Pathogenesis ,Loss of heterozygosity ,Mice ,Immune system ,immune system diseases ,medicine ,Animals ,Immunology and Allergy ,skin and connective tissue diseases ,Autoimmune disease ,Mice, Inbred NZB ,biology ,H-2 Antigens ,DNA ,medicine.disease ,Peptide Fragments ,biology.protein ,Hybridization, Genetic ,Antibody - Abstract
In the F1 hybrid of autoimmune New Zealand Black (NZB) and phenotypically normal New Zealand White (NZW) mice, there occurs a severe systemic lupus erythematosus (SLE)-like autoimmune disease more fulminant than that found in the parental NZB mice. To determine the role of the H-2 complex in the pathogenesis of autoimmune disease of the (NZB X NZW)F1 hybrid, we developed H-2-congenic NZB (NZB.H-2z) and NZW (NZW.H-2d) strains, and compared the degree of autoimmune features between congenic H-2d/H-2d and H-2z/H-2z homozygous F1 hybrids and the original H-2d/H-2z heterozygous (NZB X NZW)F1 hybrid. We found that autoimmune features such as productions of IgG class anti-DNA antibodies and retroviral gp70 immune complexes and the development of renal disease were to a great extent reduced in both H-2 homozygous F1 hybrids, as compared with the H-2 heterozygous (NZB X NZW)F1 hybrid. It would thus appear that the heterozygosity of H-2d haplotype derived from NZB and H-2z from NZW is essential for the autoimmune disease characteristic of the (NZB X NZW)F1 hybrid.
- Published
- 1986
28. High‐quality genome of a novel Thermosynechococcaceae species from Namibia and characterization of its protein expression patterns at elevated temperatures
- Author
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Nathanael D. Arnold, Michael Paper, Tobias Fuchs, Nadim Ahmad, Patrick Jung, Michael Lakatos, Katia Rodewald, Bernhard Rieger, Farah Qoura, Martha Kandawa‐Schulz, Norbert Mehlmer, and Thomas B. Brück
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cyanobacteria ,genomics ,proteomics ,taxonomy ,thermophilic ,Thermosynechococcaceae ,Microbiology ,QR1-502 - Abstract
Abstract Thermophilic cyanobacteria thrive in extreme environments, making their thermoresistant enzymes valuable for industrial applications. Common habitats include hot springs, which act as evolutionary accelerators for speciation due to geographical isolation. The family Thermosynechococcaceae comprises thermophilic cyanobacteria known for their ability to thrive in high‐temperature environments. These bacteria are notable for their photosynthetic capabilities, significantly contributing to primary production in extreme habitats. Members of Thermosynechococcaceae exhibit unique adaptations that allow them to perform photosynthesis efficiently at elevated temperatures, making them subjects of interest for studies on microbial ecology, evolution, and potential biotechnological applications. In this study, the genome of a thermophilic cyanobacterium, isolated from a hot spring near Okahandja in Namibia, was sequenced using a PacBio Sequel IIe long‐read platform. Cultivations were performed at elevated temperatures of 40, 50, and 55°C, followed by proteome analyses based on the annotated genome. Phylogenetic investigations, informed by the 16S rRNA gene and aligned nucleotide identity (ANI), suggest that the novel cyanobacterium is a member of the family Thermosynechococcaceae. Furthermore, the new species was assigned to a separate branch, potentially representing a novel genus. Whole‐genome alignments supported this finding, revealing few conserved regions and multiple genetic rearrangement events. Additionally, 129 proteins were identified as differentially expressed in a temperature‐dependent manner. The results of this study broaden our understanding of cyanobacterial adaptation to extreme environments, providing a novel high‐quality genome of Thermosynechococcaceae cyanobacterium sp. Okahandja and several promising candidate proteins for expression and characterization studies.
- Published
- 2024
- Full Text
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29. Requirement of H-2 heterozygosity for autoimmunity in (NZB × NZW)F1 hybrid mice
- Author
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Paper, Short, primary, Hirose, Sachiko, additional, Ueda, Genjiro, additional, Noguchi, Kazuo, additional, Okada, Takashi, additional, Sekigawa, Iwao, additional, Sato, Hidetoshi, additional, and Shirai, Toshikazu, additional
- Published
- 1986
- Full Text
- View/download PDF
30. The migration of lymphocytes in the fetal lamb
- Author
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Paper, Short, primary, Cahill, Ross N. P., additional, Poskitt, David C., additional, Hay, John B., additional, Heron, Iver, additional, and Trnka, Zdenek, additional
- Published
- 1979
- Full Text
- View/download PDF
31. Age‐dependent changes in tolerizability with rabbit gamma‐globulin in the Biozzi high and low‐responder lines of mice
- Author
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Papers, Short, primary, Nakano, Katsuji, additional, Cinader, Bernhard, additional, and Sabiston, Brian H., additional
- Published
- 1979
- Full Text
- View/download PDF
32. Composition of the lymphoid cell populations from omental milky spots during the immune response in C57BL/Ka mice
- Author
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Paper, Short, primary, Dux, Kazimir, additional, Rouse, Robert V., additional, and Kyewski, Bruno, additional
- Published
- 1986
- Full Text
- View/download PDF
33. Hanging out at the club: Breeding status and territoriality affect individual space use, multi‐species overlap and pathogen transmission risk at a seabird colony
- Author
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Juliet Lamb, Jeremy Tornos, Romain Dedet, Hubert Gantelet, Nicolas Keck, Juliette Baron, Marine Bely, Augustin Clessin, Aline Flechet, Amandine Gamble, Thierry Boulinier, Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), Université Paul-Valéry - Montpellier 3 (UPVM)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Montpellier, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Université de Montpellier (UM), Laboratoire Départemental Vétérinaire de l'Hérault, Conseil Général de l'Hérault, CEVA- BIOVAC, University of California (UC), This work was funded by the French Polar Institute (IPEV ECOPATH-1151), ANR ECOPATHS (ANR-21-CE35-0016), Réserve Naturelle Nationale des Terres Australes Françaises, Zone Atelier Antarctique (ZATA) and OSU OREME ECOPOP. We also acknowledge funding support for REMOVE_DISEASE project selected as part of the BiodiveRestore joint call from Biodiversa and Water JPI (ANR-21-BIRE-0006). This paper is a contribution of the Plan National d'Action Albatros d'Amsterdam. Juliet Lamb was funded by a Marie Curie Individual Fellowship (H2020-MSCA-IF-2018 #843470), Amandine Gamble by a French Ministry of Research PhD fellowship, and Jeremy Tornos by Ceva Biovac and ANRT for a CIFRE PhD fellowship. Experimental design was approved by the Regional Animal Experimentation Ethical Committee (French Ministry of Research permit #10257-2018011712301381v6) and by the Comité de l'Environnement Polaire (A-2017-97, A-2017-111, A-2018-123, A 2018-139, A-2019-69, 2019-121, A-2019-132 and A-2019-135)., ANR-21-BIRE-0006,REMOVE_DISEASE,Conservation and restoration of degraded insular biodiversity: impacts of the removal of introduced mammals on the dynamics of infectious diseases in seabirds across islands of the Southern Ocean.(2021), and ANR-21-CE35-0016,ECOPATHS,Ecologie de la circulation des agents infectieux dans les populations de vertébrés coloniaux: surveillance, compréhension et implications pour la conservation de la biodiversité dans les îles sub-antarctiques(2021)
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[SDV.BA.ZV]Life Sciences [q-bio]/Animal biology/Vertebrate Zoology ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Ecology, Evolution, Behavior and Systematics - Abstract
International audience; Wildlife movement ecology often focuses on breeders, whose territorial attachments facilitate trapping and following individuals over time. This leads to incomplete understanding of movements of individuals not actively breeding due to age, breeding failure, subordinance, and other factors. These individuals are often present in breeding populations and contribute to processes such as competition and pathogen spread. Therefore, excluding them from movement ecology studies could bias or mask important spatial dynamics. Loafing areas offer an alternative to breeding sites for capturing and tracking individuals. Such sites may allow for sampling individuals regardless of breeding status, while also avoiding disturbance of sensitive breeding areas. However, little is known about the breeding status of individuals attending loafing sites, or how their movements compare to those of breeders captured at nests. We captured a seabird, the brown skua, attending either nests or loafing areas (‘clubs’) at a multi-species seabird breeding site on Amsterdam Island (southern Indian Ocean). We outfitted skuas with GPS-UHF transmitters and inferred breeding statuses of individuals captured at clubs using movement patterns of breeders captured at nests. We then compared space use and activity patterns between breeders and nonbreeders. Both breeding and nonbreeding skuas attended clubs. Nonbreeders ranged more widely, were more active, and overlapped more with other seabirds and marine mammals than did breeders. Moreover, some nonbreeders occupied fixed territories and displayed more restricted movements than those without territories. Nonbreeders became less active over the breeding season, while activity of breeders remained stable. Nonbreeding skuas were exposed to the agent of avian cholera at similar rates to breeders but were more likely to forage in breeding areas of the endangered endemic Amsterdam albatross, increasing opportunities for interspecific pathogen transmission. Our results show that inference based only on breeders fails to capture important aspects of population-wide movement patterns. Capturing nonbreeders as well as breeders would help to improve population-level representation of movement patterns, elucidate and predict effects of external changes and conservation interventions (e.g. rat eradication) on movement patterns and pathogen spread, and develop strategies to manage outbreaks of diseases such as highly pathogenic avian influenza.; Les recherches sur l'écologie du déplacement de la faune sauvage au niveau individuel ciblent souvent des individus reproducteurs, car leur attachement territorial aux sites de reproduction facilite la capture, la recapture, et le suivi des individus à travers le temps. Au contraire, les individus qui ne reproduisent pas (à cause de leur âge, échec de reproduction, manque de dominance et autres facteurs) sont souvent exclus. Ces individus sont souvent présents aux sites de reproduction et contribuent aux processus de compétition, et de transmission des pathogènes. Par conséquence, leur exclusion des études de mouvements risque d'introduire des biais dans notre connaissance des dynamiques spatiales des populations. Les sites de repos présentent une alternative aux sites de reproduction pour la capture et suivi des individus. Ces sites présentent l'opportunité de capturer des oiseaux reproducteurs ainsi que non-reproducteurs, tout en évitant de déranger des sites sensibles de nidification. Néanmoins, les sites de repos sont peu connus, et il est difficile de déterminer si les oiseaux qui les utilisent sont reproducteurs ou non-reproducteurs, ou de savoir comment leurs mouvements se comparent à ceux d'oiseaux attrapés au nid. Nous avons capturé des oiseaux marins prédateurs, les labbes antarctiques, sur leurs nids ou sur des sites de repos partagés (« clubs »). Nous avons attaché des balises GPS-UHF aux oiseaux et avons déterminé le statut reproductif des oiseaux de statut inconnu en comparant leurs mouvements à ceux de labbes capturés au nid (et donc clairement reproducteurs). Nous avons ensuite comparé l'utilization de l'espace et les niveaux d'activité entre labbes reproducteurs et non-reproducteurs. Les labbes reproducteurs et non-reproducteurs étaient présents aux « clubs ». Comparés aux reproducteurs, les labbes non-reproducteurs utilisaient des surfaces plus grandes, étaient plus actifs, et exploitaient plus souvent des zones utilisées par d'autres espèces d'oiseaux et de mammifères marins. Par ailleurs, quelques labbes non-reproducteurs occupaient des territoires fixes et présentaient des mouvements plus limités que ceux qui n'occupaient pas de territoire. Les labbes non-reproducteurs étaient autant exposés à l'agent du choléra aviaire que les reproducteurs, mais ils se nourrissaient plus souvent dans l'habitat de l'albatros d'Amsterdam (une espèce en danger), augmentant leur probabilité de transmettre des pathogènes à cette espèce. Nos résultats montrent que les études de déplacement ne ciblant que les oiseaux reproducteurs ne représentent les déplacements de la population générale que de manière imparfaite. Capturer des oiseaux sur des sites de repos peut ainsi améliorer le taux de représentation. Le suivi des individus non-reproducteurs, de labbes ou d'autres espèces, peut aider à prédire les effets de changements des conditions externes (comme l'éradication des rats sur l'Amsterdam ou l'apparition et transmission de la grippe aviaire) qui peuvent altérer les dynamiques éco-épidemiologiques et les interactions entre espèces.
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- 2022
34. Partial migration in roe deer: migratory and resident tactics are end points of a behavioural gradient determined by ecological factors
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Petter Kjellander, Atle Mysterud, Federico Ossi, Markus Neteler, Anja Stache, Luca Delucchi, John D. C. Linnell, Stefano Focardi, Marco Heurich, A. J. Mark Hewison, Francesca Cagnacci, Nicolas Morellet, Ferdinando Urbano, Fondazione Edmund Mach - Edmund Mach Foundation [Italie] (FEM), Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS), Istituto Superiore per la Protezione e la Ricerca Ambientale (ISPRA), Department of Research and Documentation, Bavarian Forest National Park, Unité de recherche Comportement et Ecologie de la Faune Sauvage (CEFS), Institut National de la Recherche Agronomique (INRA), Grimsö Wildlife Research Station, Department of Ecology, Swedish University of Agricultural Sciences (SLU)-Swedish University of Agricultural Sciences (SLU), Norwegian Institute for Nature Research (NINA), University of Oslo (UiO), Independent, and This paper was conceived and written within the collaborative EURODEER project (paper no. 001 of the EURODEER series
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Capriolo ,0106 biological sciences ,Ungulate ,Range (biology) ,[SDV]Life Sciences [q-bio] ,partialL migration ,population ,Distribution (economics) ,010603 evolutionary biology ,01 natural sciences ,Ungulati ,Capreolus ,Settore BIO/07 - ECOLOGIA ,biology.animal ,Ecosystem ,GPS location data ,EURODEER ,Ecology, Evolution, Behavior and Systematics ,general phenomenon of migration ,biology ,Ecology ,business.industry ,Residence time ,010604 marine biology & hydrobiology ,Facultative migration ,15. Life on land ,biology.organism_classification ,Habitat selection ,Roe deer ,Geography ,Habitat ,environmental sciences and ecology ,ecological factors ,Capreolus capreolus ,Residence ,ecology ,business ,Migrazione parziale - Abstract
International audience; Ungulate populations exhibiting partial migration present a unique opportunity to explore the causes of the general phenomenon of migration. The European roe deer Capreolus capreolus is particularly suited for such studies due to a wide distribution range and a high level of ecological plasticity. In this study we undertook a comparative analysis of roe deer GPS location data from a representative set of European ecosystems available within the EURODEER collaborative project. We aimed at evaluating the ecological factors affecting migration tactic (i.e. occurrence) and pattern (i.e. timing, residence time, number of migratory trips). Migration occurrence varied between and within populations and depended on winter severity and topographic variability. Spring migrations were highly synchronous, while the timing of autumn migrations varied widely between regions, individuals and sexes. Overall, roe deer were faithful to their summer ranges, especially males. In the absence of extreme and predictable winter conditions, roe deer seemed to migrate opportunistically, in response to a tradeoff between the costs of residence in spatially separated ranges and the costs of migratory movements. Animals performed numerous trips between winter and summer ranges which depended on factors influencing the costs of movement such as between-range distance, slope and habitat openness. Our results support the idea that migration encompasses a behavioural continuum, with one-trip migration and residence as its end points, while commuting and multi-trip migration with short residence times in seasonal ranges are intermediate tactics. We believe that a full understanding of the variation in tactics of temporal separation in habitat use will provide important insights on migration and the factors that influence its prevalence.
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- 2011
35. Statin Use and Incidence of Parkinson's Disease in Women from the French <scp>E3N</scp> Cohort Study
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Thi Thu Ha Nguyen, Agnès Fournier, Émeline Courtois, Fanny Artaud, Sylvie Escolano, Pascale Tubert‐Bitter, Marie‐Christine Boutron‐Ruault, Isabelle Degaey, Emmanuel Roze, Marianne Canonico, Ismaïl Ahmed, Anne C.M. Thiébaut, Alexis Elbaz, HAL UVSQ, Équipe, APPEL À PROJETS GÉNÉRIQUE 2018 - Facteurs de risque de la Maladie de Parkinson chez les femmes de la cohorte E3N - - PARKIN-WOMEN2018 - ANR-18-CE36-0006 - AAPG2018 - VALID, Centre de recherche en épidémiologie et santé des populations (CESP), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Hôpital Paul Brousse-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris-Saclay, Sorbonne Université (SU), CHU Pitié-Salpêtrière [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU), Institut du Cerveau = Paris Brain Institute (ICM), Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-CHU Pitié-Salpêtrière [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU)-Sorbonne Université (SU)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), T.T.H.N. was supported by post‐doctoral grants from the Michael J Fox foundation and the France Parkinson association. E.C. was supported by post‐doctoral grants from the Michael J Fox foundation. F.A. reports no disclosures. S.E. reports no disclosures. P.T.‐B. reports no disclosures. M.‐C.B.‐R. received speaker fees in 2020 from MAYOLI‐SPINDLER and GILEAD outside the field of the present paper. I.D. reports no disclosures. E.R. received honorarium for speech from Orkyn Aguettant, Elivie and for participating in an advisory board from Allergan and has received research support from Merz‐Pharma, Orkyn, Aguettant, Elivie, Ipsen, Allergan, Everpharma, Fondation Desmarest, AMADYS, ADCY5.org , ANR, Societé Française de Médecine Esthétique, and Dystonia Medical Research Foundation. M.C. has obtained research grant from French National Research Agency (ANR). I.A. reports no disclosures. A.C.M.T. reports no disclosures. A.E. has obtained research grants from Plan Ecophyto (French ministry of agriculture) and France Parkinson., T.T.H.N. was supported by postdoctoral grants from The Michael J. Fox Foundation and the France Parkinson Association. E.C. was supported by postdoctoral grants from The Michael J. Fox foundation. F.A., S.E., P.T.‐B., I.A., and A.C.M.T. report no disclosures. M.‐C.B.‐R. received speaker fees in 2020 from Mayoli‐Spindler and Gilead outside the field of the present article. I.D. reports no disclosures. E.R. received honorarium for speeches from Orkyn Aguettant and Elivie and for participating in an advisory board from Allergan and has received research support from Merz‐Pharma, Orkyn, Aguettant, Elivie, Ipsen, Allergan, Everpharma, Fondation Desmarest, AMADYS, ADCY5.org , French National Research Agency (ANR), Societé Française de Médecine Esthétique, and the Dystonia Medical Research Foundation. M.C. obtained a research grant from the ANR. A.E. has obtained research grants from Plan Ecophyto (French Ministry of Agriculture) and France Parkinson Association. The work reported in this article was performed during A.F.'s term as a visiting scientist at the International Agency for Research on Cancer. The authors declare no other relationships or activities that could appear to have influenced the submitted work. Relevant conflicts of interest/financial disclosures, This work was realized with data of the E3N cohort (INSERM) and supported by the Mutuelle Générale de l'Education Nationale (MGEN), Gustave Roussy Institute, and French League against Cancer for the constitution and maintenance of the cohort. This work has benefited from State aid managed by the National Research Agency (ANR) under the program 'Investment in the future' bearing the reference ANR‐10‐COHO‐0006 and under the program 'Young researcher' bearing the reference ANR‐18‐CE36‐0006‐01, as well as a subsidy from the Ministry of Higher Education, Research and Innovation for public service charges bearing the reference N°2102918823, 2103236497, and 2103586016, and from IRESP (Institut de Recherche En Santé Publique). The authors acknowledge all women enrolled in the E3N cohort for their continued participation. They are also grateful to all members of the E3N study group., This project was funded by the Michael J. Fox Foundation for Parkinson's Research and the France Parkinson Association. Funding agencies., and ANR-18-CE36-0006,PARKIN-WOMEN,Facteurs de risque de la Maladie de Parkinson chez les femmes de la cohorte E3N(2018)
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[SDV] Life Sciences [q-bio] ,pharmacoepidemiology ,cohort studies ,drug repurposing ,Neurology ,Parkinson's disease ,[SDV]Life Sciences [q-bio] ,Neurology (clinical) ,statins - Abstract
International audience; Background: Statins represent candidates for drug repurposing in Parkinson's disease (PD). Few studies examined the role of reverse causation, statin subgroups, and dose–response relations based on time-varying exposures. Objectives: We examined whether statin use is associated with PD incidence while attempting to overcome the limitations described previously, especially reverse causation. Method: We used data from the E3N cohort study of French women (follow-up, 2004–2018). Incident PD was ascertained using multiple sources and validated by experts. New statin users were identified through linked drug claims. We set up a nested case-control study to describe trajectories of statin prescriptions and medical consultations before diagnosis. We used time-varying multivariable Cox proportional hazards regression models to examine the statins–PD association. Exposure indexes included ever use, cumulative duration/dose, and mean daily dose and were lagged by 5 years to address reverse causation. Results: The case-control study (693 cases, 13,784 controls) showed differences in case-control trajectories, with changes in the 5 years before diagnosis in cases. Of 73,925 women (aged 54–79 years), 524 developed PD and 11,552 started using statins in lagged analyses. Ever use of any statin was not associated with PD (hazard ratio [HR] = 0.87, 95% confidence interval [CI] = 0.67–1.11). Alternatively, ever use of lipophilic statins was significantly associated with lower PD incidence (HR = 0.70, 95% CI = 0.51–0.98), with a dose–response relation for the mean daily dose (P-linear trend = 0.02). There was no association for hydrophilic statins. Conclusion: Use of lipophilic statins at least 5 years earlier was associated with reduced PD incidence in women, with a dose–response relation for the mean daily dose. © 2023 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society. © 2023 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society
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- 2023
36. Anthropometric deficits and the associated risk of death by age and sex in children aged 6–59 months: A meta‐analysis
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Susan Thurstans, Stephanie V. Wrottesley, Bridget Fenn, Tanya Khara, Paluku Bahwere, James A. Berkley, Robert E. Black, Erin Boyd, Michel Garenne, Sheila Isanaka, Natasha Lelijveld, Christine M. McDonald, Andrew Mertens, Martha Mwangome, Kieran S. O'Brien, Heather Stobaugh, Sunita Taneja, Keith P. West, Saul Guerrero, Marko Kerac, André Briend, Mark Myatt, London School of Hygiene and Tropical Medicine (LSHTM), SOUtenabilité et RésilienCE (SOURCE), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Institut de Recherche pour le Développement (IRD [France-Nord]), Epidémiologie des Maladies Emergentes - Emerging Diseases Epidemiology, Université Paris Cité (UPCité)-Pasteur-Cnam Risques infectieux et émergents (PACRI), Institut Pasteur [Paris] (IP)-Conservatoire National des Arts et Métiers [CNAM] (CNAM), HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM)-HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM)-Université Paris Cité (UPCité)-Institut Pasteur [Paris] (IP)-Conservatoire National des Arts et Métiers [CNAM] (CNAM), HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM)-HESAM Université - Communauté d'universités et d'établissements Hautes écoles Sorbonne Arts et métiers université (HESAM), Epicentre [Paris] [Médecins Sans Frontières], United States Agency for International Development, USAID, Irish Aid: HQPU/2021/ENN, This paper is made possible by the generous support of the American people through the United States Agency for International Development (USAID), and by funding from Irish Aid (grant number (HQPU/2021/ENN). The contents are entirely the responsibility of its authors and do not necessarily reflect the views of USAID or the United States Government or represent or reflect Irish Aid policy., Tampere University, and Clinical Medicine
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Male ,Adolescent ,wasting ,Thinness ,underweight ,3123 Gynaecology and paediatrics ,Clinical Research ,Prevalence ,Humans ,sex ,Child ,Growth Disorders ,Pediatric ,Nutrition and Dietetics ,Anthropometry ,Nutrition & Dietetics ,Wasting Syndrome ,Prevention ,Malnutrition ,stunting ,Public Health, Environmental and Occupational Health ,Infant ,Obstetrics and Gynecology ,mortality ,Good Health and Well Being ,age ,Pediatrics, Perinatology and Child Health ,Female ,Zero Hunger ,[SDV.AEN]Life Sciences [q-bio]/Food and Nutrition - Abstract
Risk of death from undernutrition is thought to be higher in younger than in older children, but evidence is mixed. Research also demonstrates sex differences whereby boys have a higher prevalence of undernutrition than girls. This analysis described mortality risk associated with anthropometric deficits (wasting, underweight and stunting) in children 6–59 months by age and sex. We categorised children into younger (6–23 months) and older (24–59 months) age groups. Age and sex variations in near-term (within 6 months) mortality risk, associated with individual anthropometric deficits were assessed in a secondary analysis of multi-country cohort data. A random effects meta-analysis was performed. Data from seven low-or-middle-income-countries collected between 1977 and 2013 were analysed. One thousand twenty deaths were recorded for children with anthropometric deficits. Pooled meta-analysis estimates showed no differences by age in absolute mortality risk for wasting (RR 1.08, p = 0.826 for MUAC < 125 mm; RR 1.35, p = 0.272 for WHZ < −2). For underweight and stunting, absolute risk of death was higher in younger (RR 2.57, p < 0.001) compared with older children (RR 2.83, p < 0.001). For all deficits, there were no differences in mortality risk for girls compared with boys. There were no differences in the risk of mortality between younger and older wasted children, supporting continued inclusion of all children under-five in wasting treatment programmes. The risk of mortality associated with underweight and stunting was higher among younger children, suggesting that prevention programmes might be justified in focusing on younger children where resources are limited. There were no sex differences by age in mortality risk for all deficits.
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- 2022
37. The use of genetic tests to diagnose and manage patients with myeloproliferative and myeloproliferative/myelodysplastic neoplasms, and related disorders
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Catherine Cargo, Mamta Garg, Adam J. Mead, Anna L. Godfrey, Nicholas C.P. Cross, and Paper, A British Society for Haematology Good Practice
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medicine.medical_specialty ,Receptor, Platelet-Derived Growth Factor alpha ,Oncogene Proteins, Fusion ,Mutation, Missense ,Severity of Illness Index ,Receptors, Colony-Stimulating Factor ,Humans ,Point Mutation ,Medicine ,Eosinophilia ,Genetic Testing ,mRNA Cleavage and Polyadenylation Factors ,Biological Products ,Myeloproliferative Disorders ,business.industry ,Disease Management ,Bone Marrow Examination ,Exons ,Hematology ,Janus Kinase 2 ,Prognosis ,Dermatology ,Clone Cells ,Proto-Oncogene Proteins c-kit ,Molecular Diagnostic Techniques ,Myelodysplastic Syndromes ,medicine.symptom ,Calreticulin ,business ,Receptors, Thrombopoietin ,Forecasting - Published
- 2021
38. Strategic Withholding and Imprecision in Asset Measurement
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Jeremy Bertomeu, Davide Cianciaruso, Edwige Cheynel, Ecole des Hautes Etudes Commerciales (HEC Paris), and HEC Paris Research Paper Series
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Economics and Econometrics ,Persuasion ,Endowment ,media_common.quotation_subject ,Collateralized debt obligation ,Enterprise value ,Discretion ,voluntary disclosure ,imprecision ,JEL: G - Financial Economics/G.G3 - Corporate Finance and Governance ,Microeconomics ,Voluntary disclosure ,accounting standards ,Accounting ,JEL: M - Business Administration and Business Economics • Marketing • Accounting • Personnel Economics/M.M4 - Accounting and Auditing ,Economics ,real effects ,[SHS.GESTION]Humanities and Social Sciences/Business administration ,Production (economics) ,Asset (economics) ,Enforcement ,Finance ,media_common - Abstract
How precise should accounting measurements be, if management has discretion to strategically withhold? We examine this question by nesting an optimal persuasion mechanism, which controls what measurements are conducted, within a voluntary disclosure framework a la Dye (85) and Jung and Kwon (1988). In our setting, information has real effects because the firm uses it to make a continuous operating decision, increasing in the market's belief. Absent frictions other than uncertainty about information endowment, we show that imprecision can reduce strategic withholding but always decreases firm value. We then examine plausible environments under which, by contrast, there is an optimal level of imprecision featuring coarseness at the marginal discloser. We offer additional implications in the contexts of enforcement against strategic withholding and financing with collateralized assets.
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- 2021
39. Deciding feasibility of a booking in the European gas market on a cycle is in P for the case of passive networks
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Johannes Thürauf, Fränk Plein, Martine Labbé, Martin Schmidt, Integrated Optimization with Complex Structure (INOCS), Inria Lille - Nord Europe, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Université libre de Bruxelles (ULB)-Centre de Recherche en Informatique, Signal et Automatique de Lille - UMR 9189 (CRIStAL), Centrale Lille-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Centrale Lille-Université de Lille-Centre National de la Recherche Scientifique (CNRS), Département d'Informatique [Bruxelles] (ULB), Faculté des Sciences [Bruxelles] (ULB), Université libre de Bruxelles (ULB)-Université libre de Bruxelles (ULB), Trier University, Friedrich-Alexander Universität Erlangen-Nürnberg (FAU), and Martine Labbé has been partially supported by the Fonds de la Recherche Scientifique - FNRS under Grant no PDR T0098.18. Fränk Plein thanks the Fonds de la Recherche Scientifique - FNRS for his Aspirant fellowship supporting the research for this publication. He also thanks the Deutsche Forschungsgemeinschaft for their support within the project Z01 in CRC TRR 154. This research has been performed as part of the Energie Campus Nürnberg and is supported by funding of the Bavarian State Government. The third and fourth author also thank the DFG for their support within projects A05, B07, and B08 in CRC TRR 154. Finally, we want to thank Lars Schewe for many fruitful discussions on the topic of this paper.
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[INFO.INFO-CC]Computer Science [cs]/Computational Complexity [cs.CC] ,Gas networks ,Mathematical optimization ,Computational complexity theory ,Computer Networks and Communications ,Computer science ,Dimension (graph theory) ,0211 other engineering and technologies ,System of polynomial equations ,Modèles mathématiques d'aide à la décision ,02 engineering and technology ,Cycle ,Optimisation de réseaux ,Informatique mathématique ,0502 economics and business ,Real algebraic geometry ,Time complexity ,European entry-exit market ,050210 logistics & transportation ,computational complexity ,021103 operations research ,cycle ,05 social sciences ,[INFO.INFO-RO]Computer Science [cs]/Operations Research [cs.RO] ,Maximization ,potential-based flows ,Potential-based flows ,Computational complexity ,Nonlinear system ,Bookings ,Flow (mathematics) ,bookings ,Hardware and Architecture ,90B10, 90C30, 90C35, 90C90 ,[MATH.MATH-OC]Mathematics [math]/Optimization and Control [math.OC] ,gas networks ,Software ,Information Systems - Abstract
We show that the feasibility of a booking in the European entry-exit gas market can be decided in polynomial time on single-cycle networks that are passive, i.e. do not contain controllable elements. The feasibility of a booking can be characterized by solving polynomially many nonlinear potential-based flow models for computing so-called potential-difference maximizing load flow scenarios. We thus analyze the structure of these models and exploit both the cyclic graph structure as well as specific properties of potential-based flows. This enables us to solve the decision variant of the nonlinear potential-difference maximization by reducing it to a system of polynomials of constant dimension that is independent of the cycle's size. This system of fixed dimension can be handled with tools from real algebraic geometry to derive a polynomial-time algorithm. The characterization in terms of potential-difference maximizing load flow scenarios then leads to a polynomial-time algorithm for deciding the feasibility of a booking. Our theoretical results extend the existing knowledge about the complexity of deciding the feasibility of bookings from trees to single-cycle networks., SCOPUS: ar.j, info:eu-repo/semantics/published
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- 2021
40. Metabolic perturbations prior to hepatocellular carcinoma diagnosis: Findings from a prospective observational cohort study
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Eva Ardanaz, Agnetha Linn Rostgaard-Hansen, Alessio Naccarati, Elisabete Weiderpass, Pekka Keski-Rahkonen, Rudolf Kaaks, Tilman Kühn, Anna Winkvist, Jośe Mariá Huerta, H. B. Bueno-De-Mesquita, Guri Skeie, Pietro Ferrari, Krasimira Aleksandrova, Gabriel Perlemuter, Augustin Scalbert, Olatz Mokoroa, Giovanna Tagliabue, Marc J. Gunter, Kim Overvad, José Ramón Quirós, Agneta Kiss, Marie-Christine Boutron-Ruault, Yahya Mahamat-Saleh, Talita Duarte-Salles, Nivonirina Robinot, Anne Tjønneland, Antonia Trichopoulou, Julie A. Schmidt, Christina C. Dahm, Roel Vermeulen, Rosario Tumino, Núria Sala, Joseph A. Rothwell, Sophia Harlid, Magdalena Stepien, Klas Sjöberg, Vivian Viallon, Neil Murphy, Anna Karakatsani, Salvatore Panico, Nicholas J. Wareham, María José Sánchez, Francesca Mancini, Domenico Palli, Mazda Jenab, Elio Riboli, Bodil Ohlsson, Kay-Tee Khaw, Centre de recherche en épidémiologie et santé des populations (CESP), Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Université Paris-Sud - Paris 11 (UP11)-Hôpital Paul Brousse-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ), Institut National Du Cancer, INCa: 2014-1-RT-02-CIRC-1 Ministerie van Volksgezondheid, Welzijn en Sport, VWS Cancer Research UK, CRUK: C570/A16491 Ministerie van Volksgezondheid, Welzijn en Sport, VWS Ligue Contre le Cancer German Cancer Research Center, DKFZ Bundesministerium für Bildung und Forschung, BMBF Institut National de la Santé et de la Recherche Médicale, Inserm Kræftens Bekæmpelse, DCS National Research Council, NRC 6236 Hellenic Health Foundation, HHF Fondation Gustave Roussy European Commission, EC Centre International de Recherche sur le Cancer, CIRC Associazione Italiana per la Ricerca sul Cancro, AIRC RD06/0020 Deutsche Krebshilfe World Cancer Research Fund, WCRF Cancerfonden Medical Research Council, MRC: MR/M012190/1, This work was supported by the French National Cancer Institute (L'Institut National du Cancer, INCA) (grant number 2014-1-RT-02-CIRC-1, PI: M. Jenab). The coordination of EPIC is financially supported by the European Commission (DG-SANCO), and the International Agency for Research on Cancer. The national cohorts are supported by Danish Cancer Society (Denmark), Ligue Contre le Cancer, Institut Gustave Roussy, Mutuelle G?n?rale de l'Education Nationale, and Institut National de la Sant? et de la Recherche M?dicale (INSERM) (France), Deutsche Krebshilfe, Deutsches Krebsforschungszentrum (DKFZ), and Federal Ministry of Education and Research (Germany), Hellenic Health Foundation (Greece), Italian Association for Research on Cancer (AIRC), National Research Council, and AIRE-ONLUS Ragusa, AVIS Ragusa, Sicilian Government (Italy), Dutch Ministry of Public Health, Welfare and Sports (VWS), Netherlands Cancer Registry (NKR), LK Research Funds, Dutch Prevention Funds, Dutch ZON (Zorg Onderzoek Nederland), World Cancer Research Fund (WCRF), and Statistics Netherlands (the Netherlands), and Nordic Center of Excellence Programme on Food, Nutrition and Health (Norway), Health Research Fund (FIS), Regional Governments of Andaluc?a, Asturias, Basque Country, Murcia (No. 6236) and Navarra, and ISCIII RETIC (RD06/0020) and the Catalan Institute of Oncology (Spain), Swedish Cancer Society, Swedish Scientific Council, and Regional Government of Sk?ne and V?sterbotten (Sweden), Cancer Research UK (14136 for EPIC-Norfolk and C570/A16491 for EPIC-Oxford) and the Medical Research Council (1000143 for EPIC-Norfolk and MR/M012190/1 for EPIC-Oxford) (UK). The funding sources had no influence on the design of the study, the collection, analysis, and interpretation of data, the writing of the report, and or the decision to submit the paper for publication. Disclaimer: Where authors are identified as personnel of the International Agency for Research on Cancer/World Health Organization, the authors alone are responsible for the views expressed in this article and they do not necessarily represent the decisions, policy or views of the International Agency for Research on Cancer/World Health Organization.
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Male ,Oncology ,Cancer Research ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,prospective observational cohort ,Glycocholic acid ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,Mass Spectrometry ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Dehydroepiandrosterone sulfate ,Internal medicine ,Biomarkers, Tumor ,medicine ,Humans ,Metabolomics ,Prospective Studies ,Aged ,Hepatitis ,business.industry ,Liver Neoplasms ,Cancer ,Feeding Behavior ,hepatocellular carcinoma ,Middle Aged ,medicine.disease ,3. Good health ,European Prospective Investigation into Cancer and Nutrition ,untargeted metabolomics ,chemistry ,Case-Control Studies ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,Cohort ,Female ,business ,Metabolic Networks and Pathways ,Chromatography, Liquid ,Cohort study - Abstract
International audience; Hepatocellular carcinoma (HCC) development entails changes in liver metabolism. Current knowledge on metabolic perturbations in HCC is derived mostly from case-control designs, with sparse information from prospective cohorts. Our objective was to apply comprehensive metabolite profiling to detect metabolites whose serum concentrations are associated with HCC development, using biological samples from within the prospective European Prospective Investigation into Cancer and Nutrition (EPIC) cohort (>520 000 participants), where we identified 129 HCC cases matched 1:1 to controls. We conducted high-resolution untargeted liquid chromatography-mass spectrometry-based metabolomics on serum samples collected at recruitment prior to cancer diagnosis. Multivariable conditional logistic regression was applied controlling for dietary habits, alcohol consumption, smoking, body size, hepatitis infection and liver dysfunction. Corrections for multiple comparisons were applied. Of 9206 molecular features detected, 220 discriminated HCC cases from controls. Detailed feature annotation revealed 92 metabolites associated with HCC risk, of which 14 were unambiguously identified using pure reference standards. Positive HCC-risk associations were observed for N1-acetylspermidine, isatin, p-hydroxyphenyllactic acid, tyrosine, sphingosine, l,l-cyclo(leucylprolyl), glycochenodeoxycholic acid, glycocholic acid and 7-methylguanine. Inverse risk associations were observed for retinol, dehydroepiandrosterone sulfate, glycerophosphocholine, γ-carboxyethyl hydroxychroman and creatine. Discernible differences for these metabolites were observed between cases and controls up to 10 years prior to diagnosis. Our observations highlight the diversity of metabolic perturbations involved in HCC development and replicate previous observations (metabolism of bile acids, amino acids and phospholipids) made in Asian and Scandinavian populations. These findings emphasize the role of metabolic pathways associated with steroid metabolism and immunity and specific dietary and environmental exposures in HCC development.
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- 2020
41. Projecting Exposure to Extreme Climate Impact Events Across Six Event Categories and Three Spatial Scales
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Yoshihide Wada, Fang Zhao, Yasushi Honda, Thomas Hickler, Jörg Steinkamp, Nikolay Khabarov, Tobias Stacke, Lila Warszawski, David N. Bresch, Tobias Geiger, Wim Thiery, Kazuya Nishina, Jonas Jägermeyr, Sebastian Ostberg, Hannes Müller Schmied, Manolis Grillakis, Iliusi Vega, Kerry Emanuel, Akihiko Ito, Philippe Ciais, Sonia I. Seneviratne, Stefan Lange, Naota Hanasaki, Jinfeng Chang, Jan Volkholz, Aristeidis Koutroulis, Christian Folberth, Matthias Büchner, Christopher P. O. Reyer, Minoru Yoshikawa, Sven Willner, Christoph Müller, Katja Frieler, Hong Yang, Jacob Schewe, Simon N. Gosling, Alexandra Henrot, Dieter Gerten, Marie Dury, Veronika Huber, Chao Yue, Wenfeng Liu, Ted Veldkamp, Hydrology and Hydraulic Engineering, Laboratoire des Sciences du Climat et de l'Environnement [Gif-sur-Yvette] (LSCE), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Environmental Restoration and Conservation Agency, ERCA 821010 641816 SAW‐2016‐PIK‐1, 603864 Bundesministerium für Bildung und Forschung, BMBF: 01LA1829A, 01LS1201A2, 01LS1711F Ministry of Economy, Trade and Industry, METI Eidgenössische Technische Hochschule Zürich, ETH: Fel‐45 15‐1 Ministerio de Economía y Competitividad, MINECO: PCIN‐2017‐046, We thank the editor and two anonymous reviewers for constructive feedback. We thank three other anonymous reviewers for helpful comments on an earlier version of this paper submitted to a different journal. This research was supported in part by the German Federal Ministry of Education and Research (BMBF, grant numbers 01LS1201A2, 01LS1711F, and 01LA1829A) and the EU FP7 HELIX project (grant number 603864). Some authors acknowledge support from the Leibniz Competition projects SAW‐2013‐PIK‐5 (EXPACT) and SAW‐2016‐PIK‐1 (ENGAGE). Some authors acknowledge funding from the European Union's Horizon 2020 research and innovation program under grant agreement number 821010 (CASCADES). N. H., K. N., and Y. H. acknowledge support from the ERTD Funds 2RF‐1802 and S‐14 of the Environmental Restoration and Conservation Agency of Japan. W. T. was supported by an ETH Zurich postdoctoral fellowship (Fel‐45 15‐1). V. H. was supported by the Spanish Ministry of Economy, Industry and Competitiveness (MINECO, grant number PCIN‐2017‐046). P. C. acknowledges support from the CLAND ANR Convergence Institute. S. L. acknowledges funding from the European Union's Horizon 2020 research and innovation program under grant agreement number 641816 (CRESCENDO). Open access funding enabled and organized by Projekt DEAL., Institut national des sciences de l'Univers (INSU - CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université de Versailles Saint-Quentin-en-Yvelines (UVSQ), and Water and Climate Risk
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010504 meteorology & atmospheric sciences ,HYDROLOGICAL MODELS ,Population ,0207 environmental engineering ,FLOOD RISK ,Environmental Sciences & Ecology ,02 engineering and technology ,Subtropics ,[SDU.STU.ME]Sciences of the Universe [physics]/Earth Sciences/Meteorology ,01 natural sciences ,Population density ,Latitude ,Climate-related extreme events ,Earth and Planetary Sciences (miscellaneous) ,SDG 13 - Climate Action ,Meteorology & Atmospheric Sciences ,BURNED AREA ,GLOBAL CROP PRODUCTION ,Geosciences, Multidisciplinary ,020701 environmental engineering ,education ,0105 earth and related environmental sciences ,General Environmental Science ,Event (probability theory) ,education.field_of_study ,Science & Technology ,Land use ,Global warming ,VEGETATION MODEL ORCHIDEE ,Geology ,15. Life on land ,TERRESTRIAL CARBON BALANCE ,13. Climate action ,Climatology ,Physical Sciences ,TROPICAL CYCLONE ACTIVITY ,HURRICANE INTENSITY ,Environmental science ,Tropical cyclone ,INTERANNUAL VARIABILITY ,Life Sciences & Biomedicine ,Environmental Sciences ,INCORPORATING SPITFIRE - Abstract
Summarization: The extent and impact of climate‐related extreme events depend on the underlying meteorological, hydrological, or climatological drivers as well as on human factors such as land use or population density. Here we quantify the pure effect of historical and future climate change on the exposure of land and population to extreme climate impact events using an unprecedentedly large ensemble of harmonized climate impact simulations from the Inter‐Sectoral Impact Model Intercomparison Project phase 2b. Our results indicate that global warming has already more than doubled both the global land area and the global population annually exposed to all six categories of extreme events considered: river floods, tropical cyclones, crop failure, wildfires, droughts, and heatwaves. Global warming of 2°C relative to preindustrial conditions is projected to lead to a more than fivefold increase in cross‐category aggregate exposure globally. Changes in exposure are unevenly distributed, with tropical and subtropical regions facing larger increases than higher latitudes. The largest increases in overall exposure are projected for the population of South Asia. Presented on: Earth's Future
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- 2020
42. Clinical and epidemiological characteristics of 1420 European patients with mild‐to‐moderate coronavirus disease 2019
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Lechien, Jerome R., Chiesa‐Estomba, Carlos M., Place, Sammy, Van Laethem, Yves, Cabaraux, Pierre, Mat, Quentin, Huet, Kathy, Plzak, Jan, Horoi, Mihaela, Hans, Stéphane, Rosaria Barillari, Maria, Cammaroto, Giovanni, Fakhry, Nicolas, Martiny, Delphine, Ayad, Tareck, Jouffe, Lionel, Hopkins, Claire, Saussez, Sven, Blecic, Serge, De Siati, Daniele R., Leich, Pierre, Souchay, Christel, Rossi, Camelia, Journe, Fabrice, Hsieh, Julien, Ris, Laurence, El Afia, Fahd, Harmegnies, Bernard, Distinguin, Lea, Chekkoury‐Idrissi, Younes, Circiu, Marta, Lavigne, Philippe, Lopez Delgado, Irene, Calvo‐Henriquez, Christian, Falanga, Chiara, Coppee, Frederique, Le Bon, Serge Daniel, Rodriguez, Alexandra, Dequanter, Didier, Cornelis, Jean‐Philippe, Vergez, Sebastien, Koenen, Lukas, Giuditta, Mannelli, Molteni, Gabriele, Tucciarone, Manuel, Radulesco, Thomas, Khalife, Mohamad, Fourneau, Anne‐Francoise, Cherifi, Soraya, Manto, Mario, Michel, Justin, Mannelli, Giuditta, Cantarella, Giovanna, Université de Versailles Saint-Quentin-en-Yvelines - UFR Sciences de la santé Simone Veil (UVSQ Santé), Université de Versailles Saint-Quentin-en-Yvelines (UVSQ), Assistance Publique - Hôpitaux de Marseille (APHM), Laboratoire Parole et Langage (LPL), Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), We would like to thank Bayesia (BayesiaLab?, Chang?, France) for the Network Analysis, Jean-Louis Vincent and Michel Van Haeverbeek for the review of the paper or their useful comments, the heads of the Hospitals, which have been involved in the study, for their help in the rapid conduction of the study and the agreement of ethics committees, the European Press/Media (i.e. Le Monde, La Libre, Le Soir, MediQuality, MedScape, and Le Specialiste) for their help in the spread of the information about the study, and FRMH & UMONS for the grant and the support., Lechien, J. R., Chiesa-Estomba, C. M., Place, S., Van Laethem, Y., Cabaraux, P., Mat, Q., Huet, K., Plzak, J., Horoi, M., Hans, S., Barillari, M. R., Cammaroto, G., Fakhry, N., Martiny, D., Ayad, T., Jouffe, L., Hopkins, C., Saussez, S., Blecic, S., De Siati, D. R., Leich, P., Souchay, C., Rossi, C., Journe, F., Hsieh, J., Ris, L., El Afia, F., Harmegnies, B., Distinguin, L., Chekkoury-Idrissi, Y., Circiu, M., Lavigne, P., Lopez Delgado, I., Calvo-Henriquez, C., Falanga, C., Coppee, F., Le Bon, S. D., Rodriguez, A., Dequanter, D., Cornelis, J. -P., Vergez, S., Koenen, L., Giuditta, M., Molteni, G., Tucciarone, M., Radulesco, T., Khalife, M., Fourneau, A. -F., Cherifi, S., Manto, M., Michel, J., Mannelli, G., and Cantarella, G.
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0301 basic medicine ,myalgia ,Male ,medicine ,Original ,[SDV]Life Sciences [q-bio] ,coronavirus ,symptoms ,Disease ,epidemiological ,030204 cardiovascular system & hematology ,patients ,clinical ,Olfaction Disorders ,Taste Disorders ,0302 clinical medicine ,Epidemiology ,Sore throat ,Prevalence ,Nose ,Age Factors ,Headache ,Middle Aged ,3. Good health ,Europe ,medicine.anatomical_structure ,COVID-19 ,Female ,patient ,medicine.symptom ,Symptom Assessment ,Coronavirus Infections ,Sex characteristics ,Adult ,medicine.medical_specialty ,Pneumonia, Viral ,03 medical and health sciences ,Betacoronavirus ,Sex Factors ,Throat ,Internal medicine ,Internal Medicine ,Humans ,Pandemics ,covid‐19 ,rhinorrhea ,business.industry ,SARS-CoV-2 ,Bayes Theorem ,Myalgia ,coronaviru ,030104 developmental biology ,business - Abstract
International audience; Background: The clinical presentation of European patients with mild-to-moderate COVID-19 infection is still unknown. Objective: To study the clinical presentation of COVID-19 in Europe. Methods: Patients with positive diagnosis of COVID-19 were recruited from 18 European hospitals. Epidemiological and clinical data were obtained through a standardized questionnaire. Bayesian analysis was used for analysing the relationship between outcomes. Results: A total of 1,420 patients completed the study (962 females, 30.7% of healthcare workers). The mean age of patients was 39.17 ± 12.09 years. The most common symptoms were headache (70.3%), loss of smell (70.2%), nasal obstruction (67.8%), cough (63.2%), asthenia (63.3%), myalgia (62.5%), rhinorrhea (60.1%), gustatory dysfunction (54.2%) and sore throat (52.9%). Fever was reported by 45.4%. The mean duration of COVID-19 symptoms of mild-to-moderate cured patients was 11.5 ± 5.7 days. The prevalence of symptoms significantly varied according to age and sex. Young patients more frequently had ear, nose and throat complaints, whereas elderly individuals often presented fever, fatigue and loss of appetite. Loss of smell, headache, nasal obstruction and fatigue were more prevalent in female patients. The loss of smell was a key symptom of mild-to-moderate COVID-19 patients and was not associated with nasal obstruction and rhinorrhea. Loss of smell persisted at least 7 days after the disease in 37.5% of cured patients. Conclusion: The clinical presentation of mild-to-moderate COVID-19 substantially varies according to the age and the sex characteristics of patients. Olfactory dysfunction seems to be an important underestimated symptom of mild-to-moderate COVID-19 that needs to be recognized as such by the WHO.
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- 2020
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43. Independent and Joint‐<scp>GWAS</scp>for growth traits inEucalyptusby assembling genome‐wide data for 3373 individuals across four breeding populations
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Bárbara S. F. Müller, Janeo Eustáquio de Almeida Filho, Aurélio Mendes Aguiar, Alexandre Alves Missiaggia, Orzenil B. Silva-Junior, Dario Grattapaglia, Leandro G. Neves, Elizabete Keiko Takahashi, Bruno Marco de Lima, Carla Garcia, Matias Kirst, Salvador A. Gezan, BÁRBARA S. F. MULLER, UNB, ORZENIL BONFIM DA SILVA JUNIOR, Cenargen, LEANDRO G. NEVES, RAPID GENOMICS LLC, USA, DARIO GRATTAPAGLIA, Cenargen., JANEO E. DE ALMEIDA FILHO, UENF, BRUNO M. LIMA, FIBRIA S.A. TECHNOLOGY CENTER, CARLA C. GARCIA, INTERNATIONAL PAPER OF BRAZIL, ALEXANDRE MISSIAGGIA, FIBRIA S.A. TECHNOLOGY CENTER, AURELIO M. AGUIAR, FIBRIA S.A. TECHNOLOGY CENTER, ELIZABETE TAKAHASHI, CELULOSE NIPO-BRASILEIRA (CENIBRA) S.A., MATIAS KIRST, UNIVERSITY OF FLORIDA, USA, and SALVADOR A. GEZAN, UNIVERSITY OF FLORIDA, USA
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musculoskeletal diseases ,0106 biological sciences ,0301 basic medicine ,Physiology ,Population ,Inheritance Patterns ,Single-nucleotide polymorphism ,Genome-wide association study ,Plant Science ,Biology ,Polymorphism, Single Nucleotide ,01 natural sciences ,Genome ,Linkage Disequilibrium ,03 medical and health sciences ,Quantitative Trait, Heritable ,High-throughput SNP genotyping ,Joint-GWAS ,Regional heritability mapping (RHM) ,SNP ,education ,Genetic association ,Principal Component Analysis ,Eucalyptus ,education.field_of_study ,Genome-wide association study (GWAS) ,Heritability ,Plant Breeding ,Meta-analysis ,030104 developmental biology ,Evolutionary biology ,Tree breeding ,Relatedness ,Genome, Plant ,Genome-Wide Association Study ,010606 plant biology & botany - Abstract
Genome-wide association studies (GWAS) in plants typically suffer from limited statistical power. An alternative to the logistical and cost challenge of increasing sample sizes is to gain power by meta-analysis using information from independent studies. We carried out GWAS for growth traits with six single-marker models and regional heritability mapping (RHM) in four Eucalyptus breeding populations independently and by Joint-GWAS, using gene and segment-based models, with data for 3373 individuals genotyped with a communal EUChip60KSNP platform. While single-single nucleotide polymorphism (SNP) GWAS hardly detected significant associations at high-stringency in each population, gene-based Joint-GWAS revealed nine genes significantly associated with tree height. Associations detected using single-SNP GWAS, RHM and Joint-GWAS set-based models explained on average 3-20% of the phenotypic variance. Whole-genome regression, conversely, captured 64-89% of the pedigree-based heritability in all populations. Several associations independently detected for the same SNPs in different populations provided unprecedented GWAS validation results in forest trees. Rare and common associations were discovered in eight genes involved in cell wall biosynthesis and lignification. With the increasing adoption of genomic prediction of complex phenotypes using shared SNPs and much larger tree breeding populations, Joint-GWAS approaches should provide increasing power to pinpoint discrete associations potentially useful toward tree breeding and molecular applications.
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- 2018
44. Who Are the Value and Growth Investors?
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Paolo Sodini, Laurent E. Calvet, Sebastien Betermier, Groupement de Recherche et d'Etudes en Gestion à HEC (GREGH), Ecole des Hautes Etudes Commerciales (HEC Paris)-Centre National de la Recherche Scientifique (CNRS), Department of Finance, Stockholm School of Economics (SSE), and HEC Paris Research Paper Series
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Economics and Econometrics ,Leverage (finance) ,Financial economics ,asset pricing,value premium,household finance,portfolio allocation,human capital,G-SIFIs ,value premium ,Real estate ,Growth investing ,Human capital ,household finance ,Market value added ,Accounting ,0502 economics and business ,factor-based investing ,JEL: G - Financial Economics/G.G1 - General Financial Markets/G.G1.G11 - Portfolio Choice • Investment Decisions ,Value premium ,Economics ,Capital asset pricing model ,human capital ,Balance sheet ,050207 economics ,050208 finance ,05 social sciences ,portfolio allocation ,Asset pricing ,jel:G12 ,jel:G11 ,Value (economics) ,[SHS.GESTION]Humanities and Social Sciences/Business administration ,Portfolio ,Demographic economics ,Value (mathematics) ,JEL: G - Financial Economics/G.G1 - General Financial Markets/G.G1.G12 - Asset Pricing • Trading Volume • Bond Interest Rates ,Finance - Abstract
This paper investigates the determinants of value and growth investing in a large administrative panel of Swedish residents over the 1999-2007 period. We document strong relationships between a household's portfolio tilt and the household's financial and demographic characteristics. Value investors have higher financial and real estate wealth, lower leverage, lower income risk, lower human capital, and are more likely to be female than the average growth investor. Households actively migrate to value stocks over the life-cycle and, at higher frequencies, dynamically offset the passive variations in the value tilt induced by market movements. We verify that these results are not driven by cohort effects, financial sophistication, biases toward popular or professionally close stocks, or unobserved heterogeneity in preferences. We relate these household-level results to some of the leading explanations of the value premium.
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- 2017
45. <scp>B</scp>acillus subtilisserine/threonine protein kinase<scp>YabT</scp>is involved in spore development via phosphorylation of a bacterial recombinase
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Céline Henry, Ivan Mijakovic, Alain Trubuil, Lei Shi, Magali Ventroux, Marie-Françoise Noirot-Gros, Ahasanul Kobir, Vladimir Bidnenko, Nathalie Pigeonneau, MICrobiologie de l'ALImentation au Service de la Santé (MICALIS), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Unité de recherche Mathématiques et Informatique Appliquées (MIA), Institut National de la Recherche Agronomique (INRA), and This research was supported by the grant from the Institut National de la Recherche Agronomique to I. M. We are grateful to Stephanie Marsin (CEA, France) for the anti-RecA antiserum. We would like to dedicate the paper to the memory of Mirjana Petranovic, for her contribution to the field of bacterial DNA recombination.
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Spores ,[SDV.SA]Life Sciences [q-bio]/Agricultural sciences ,[SDV]Life Sciences [q-bio] ,Serine threonine protein kinase ,Bacillus subtilis ,Protein Serine-Threonine Kinases ,Biology ,Microbiology ,AKT3 ,Serine ,03 medical and health sciences ,YabT ,Nucleoid ,Phosphorylation ,Molecular Biology ,Research Articles ,030304 developmental biology ,Serine/threonine-specific protein kinase ,0303 health sciences ,Protein-Serine-Threonine Kinases ,030306 microbiology ,biology.organism_classification ,Rec A Recombinases ,Biochemistry ,bacteria ,Protein Processing, Post-Translational ,Gene Deletion - Abstract
International audience; We characterized YabT, a serine/threonine kinase of the Hanks family, from Bacillus subtilis. YabT is a putative transmembrane kinase that lacks the canonical extracellular signal receptor domain. We demonstrate that YabT possesses a DNA-binding motif essential for its activation. In vivoYabT is expressed during sporulation and localizes to the asymmetric septum. Cells devoid of YabT sporulate more slowly and exhibit reduced resistance to DNA damage during sporulation. We established that YabT phosphorylates DNA-recombinase RecA at the residue serine 2. A non-phosphorylatable mutant of RecA exhibits the same phenotype as the yabT mutant, and a phosphomimetic mutant of RecA complements yabT, suggesting that YabT acts via RecA phosphorylation in vivo. During spore development, phosphorylation facilitates the formation of transient and mobile RecA foci that exhibit a scanning-like movement associated to the nucleoid in the mother cell. In some cells these foci persist at the end of spore development. We show that persistent RecA foci, which presumably coincide with irreparable lesions, are mutually exclusive with the completion of spore morphogenesis. Our results highlight similarities between the bacterial serine/threonine kinase YabT and eukaryal kinases C-Abl and Mec1, which are also activated by DNA, and phosphorylate proteins involved in DNA damage repair.
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- 2013
46. Historical summer distribution of the endangered North Atlantic right whale (Eubalaena glacialis): a hypothesis based on environmental preferences of a congeneric species
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Tim D. Smith, Maria Grazia Pennino, David M. Kaplan, Sophie Monsarrat, Ana S. L. Rodrigues, Randall R. Reeves, Christine N. Meynard, Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), Institut de Recherche pour le Développement (IRD [France-Sud])-Centre National de la Recherche Scientifique (CNRS)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université Paul-Valéry - Montpellier 3 (UPVM), UMR 212 EME 'écosystèmes marins exploités' (EME), Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD), World Whaling History, Okapi Wildlife Associates, Centre de Biologie pour la Gestion des Populations (UMR CBGP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Virginia Institute of Marine Science (VIMS), College of William and Mary [Williamsburg] (WM), The MORSE project funded this project (Agence Nationale de la Recherche, CEP&S 2011 – Project ANR-11-CEPL-006). This paper benefited from discussions with members of the CESAB (Center for Synthesis and Analysis of Biodiversity) PELAGIC project, financed by the 'Fondation pour la diversité' (FRB) and the Fondation TOTAL., ANR-11-CEPL-0006,MORSE,Gestion de ressources marines sous des attendus changeants : amener la perspective historique dans la conservation de mammifères marins(2011), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut National de la Recherche Agronomique (INRA)-Université Paul-Valéry - Montpellier 3 (UPVM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), and Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut de Recherche pour le Développement (IRD [France-Sud])
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Range (biology) ,[SDV]Life Sciences [q-bio] ,Species distribution ,Population ,Endangered species ,Distribution (economics) ,historical distribution ,Latitude ,Whaling ,Boosted regression trees ,14. Life underwater ,education ,species distribution models ,Ecology, Evolution, Behavior and Systematics ,education.field_of_study ,biology ,Ecology ,business.industry ,whaling ,right whale ,biology.organism_classification ,Geography ,13. Climate action ,Right whale ,business ,Eubalaena - Abstract
International audience; Aim To obtain a plausible hypothesis for the historical distribution of North Atlantic right whales (NARWs) (Eubalaena glacialis) in their summer feeding grounds. Previously widespread in the North Atlantic, after centuries of hunting, these whales survive as a small population off eastern North America. Because their exploitation began before formal records started, information about their historical distribution is fragmentary. Location North Atlantic and North Pacific oceans. Methods We linked historical records of North Pacific right whales (E.japonica; from 19th-century American whaling logbooks) with oceanographic data to generate a species distribution model. Assuming that the two species have similar environmental preferences, the model was projected into the North Atlantic to predict environmental suitability for NARWs. The reliability of these predictions was assessed by comparing the model results with historical and recent records in the North Atlantic. Results The model predicts suitable environmental conditions over a wide, mostly offshore band across the North Atlantic. Predictions are well supported by historical and recent records, but discrepancies in some areas indicate lower discriminative ability in coastal, shallow-depth areas, suggesting that this model mainly describes the summer offshore distribution of right whales. Main conclusions Our results suggest that the summer range of the NARW consisted of a relatively narrow band (width c.10 degrees in latitude), extending from the eastern coast of North America to northern Norway, over the Grand Banks of Newfoundland, south of Greenland and Iceland, north of the British Isles and in the Norwegian Sea. These results highlight possibilities for additional research both on the history of exploitation and on the current summer distribution of this species. In particular, better survey coverage of historical whaling grounds could help inform conservation efforts for this endangered species. More generally, this study illustrates the challenges and opportunities in using historical data to understand the original distribution of highly depleted species.
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- 2015
47. Pharmacological and behavioural effects of tryptamines present in psilocybin-containing mushrooms.
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Rakoczy RJ, Runge GN, Sen AK, Sandoval O, Wells HG, Nguyen Q, Roberts BR, Sciortino JH, Gibbons WJ Jr, Friedberg LM, Jones JA, and McMurray MS
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- Animals, Male, Rats, Rats, Sprague-Dawley, Behavior, Animal drug effects, Humans, Mice, Blood-Brain Barrier metabolism, Blood-Brain Barrier drug effects, Receptor, Serotonin, 5-HT2A metabolism, Receptor, Serotonin, 5-HT2A drug effects, Psilocybin pharmacology, Psilocybin analogs & derivatives, Tryptamines pharmacology, Agaricales, Hallucinogens pharmacology
- Abstract
Background and Purpose: Demand for new antidepressants has resulted in a re-evaluation of the therapeutic potential of psychedelic drugs. Several tryptamines found in psilocybin-containing "magic" mushrooms share chemical similarities with psilocybin. Early work suggests they may share biological targets. However, few studies have explored their pharmacological and behavioural effects., Experimental Approach: We compared baeocystin, norbaeocystin and aeruginascin with psilocybin to determine if they are metabolized by the same enzymes, similarly penetrate the blood-brain barrier, serve as ligands for similar receptors and modulate behaviour in rodents similarly. We also assessed the stability and optimal storage and handling conditions for each compound., Key Results: In vitro enzyme kinetics assays found that all compounds had nearly identical rates of dephosphorylation via alkaline phosphatase and metabolism by monoamine oxidase. Further, we found that only the dephosphorylated products of baeocystin and norbaeocystin crossed a blood-brain barrier mimetic to a similar degree as the dephosphorylated form of psilocybin, psilocin. The dephosphorylated form of norbaeocystin was found to activate the 5-HT
2A receptor with similar efficacy to psilocin and norpsilocin in in vitro cell imaging assays. Behaviourally, only psilocybin induced head twitch responses in rats, a marker of 5-HT2A -mediated psychedelic effects and hallucinogenic potential. However, like psilocybin, norbaeocystin improved outcomes in the forced swim test. All compounds caused minimal changes to metrics of renal and hepatic health, suggesting innocuous safety profiles., Conclusions and Implications: Collectively, this work suggests that other naturally occurring tryptamines, especially norbaeocystin, may share overlapping therapeutic potential with psilocybin, but without causing hallucinations., (© 2024 The Author(s). British Journal of Pharmacology published by John Wiley & Sons Ltd on behalf of British Pharmacological Society.)- Published
- 2024
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48. Analytical rheology as a tool for the structural investigation of citrus pectin.
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Asimakopoulou E, Goudoulas T, Andreadis II, Fatouros DG, Ahmad M, Vasiliadou C, Theocharidou A, and Ritzoulis C
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- Cold Temperature, Rheology, Pectins, Citrus
- Abstract
Rheological analysis of citrus pectin at pH 3 and 7 elucidates its structural dynamics, revealing distinct behaviors influenced by pH. At pH 3, pectin exhibits shear-thinning, with solvent-independent unified rheological profiles identifying three concentration regimes: 0.5%-1.5%, 2%-3%, and 3.5%-4%. These regimes, alongside Cox-Merz superpositions, outline the semi-dilute (c*) and concentrated (c**) transitions at 1.5%-2% and 3%-3.5%, respectively. Moreover, a Morris equation exponent of 0.65 indicates flexible, mobility-restricted macromolecules. Conversely, at pH 7, increased viscosities and Morris plot linearity for p = .1 suggest rigid chain behavior due to electrostatic repulsion among ionized acidic groups. This rigidity leads to concentration-dependent self-assembly structures that diverge from expected unified rheological profiles, a deviation amplified by heating-cooling cycles. This study clarifies the impact of pH on citrus pectin's rheology and emphasizes the intricate relationship between polymeric chain rigidity, self-assembly, and viscosity. By providing a refined understanding of these mechanisms, our findings contribute to the broader field of polysaccharide research, offering insights critical for developing and optimizing pectin-based applications in various industries., (© 2024 The Authors. Journal of Texture Studies published by Wiley Periodicals LLC.)
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- 2024
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49. Combination of hydrophobicity and codon usage bias determines sorting of model K + channel protein to either mitochondria or endoplasmic reticulum.
- Author
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Engel AJ, Paech S, Langhans M, van Etten JL, Moroni A, Thiel G, and Rauh O
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- Animals, Mitochondria metabolism, Protein Transport, Endoplasmic Reticulum metabolism, Codon metabolism, Hydrophobic and Hydrophilic Interactions, Mammals genetics, Mammals metabolism, Codon Usage, Proteins metabolism
- Abstract
When the K
+ channel-like protein Kesv from Ectocarpus siliculosus virus 1 is heterologously expressed in mammalian cells, it is sorted to the mitochondria. This targeting can be redirected to the endoplasmic reticulum (ER) by altering the codon usage in distinct regions of the gene or by inserting a triplet of hydrophobic amino acids (AAs) into the protein's C-terminal transmembrane domain (ct-TMD). Systematic variations in the flavor of the inserted AAs and/or its codon usage show that a positive charge in the inserted AA triplet alone serves as strong signal for mitochondria sorting. In cases of neutral AA triplets, mitochondria sorting are favored by a combination of hydrophilic AAs and rarely used codons; sorting to the ER exhibits the inverse dependency. This propensity for ER sorting is particularly high when a common codon follows a rarer one in the AA triplet; mitochondria sorting in contrast is supported by codon uniformity. Since parameters like positive charge, hydrophobic AAs, and common codons are known to facilitate elongation of nascent proteins in the ribosome the data suggest a mechanism in which local changes in elongation velocity and co-translational folding in the ct-TMD influence intracellular protein sorting., (© 2023 The Authors. Traffic published by John Wiley & Sons Ltd.)- Published
- 2023
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50. "Biosynthesis of psilocybin and its nonnatural derivatives by a promiscuous psilocybin synthesis pathway in Escherichia coli".
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Flower JE, Gibbons WJ Jr, Adams AM, Wang X, Broude CN, and Jones JA
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- Humans, Cytochrome P-450 Enzyme System, Pharmaceutical Preparations, Psilocybin, Escherichia coli genetics
- Abstract
Traditional psychedelics are undergoing a transformation from recreational drugs, to promising pharmaceutical drug candidates with the potential to provide an alternative treatment option for individuals struggling with mental illness. Sustainable and economic production methods are thus needed to facilitate enhanced study of these drug candidates to support future clinical efforts. Here, we expand upon current bacterial psilocybin biosynthesis by incorporating the cytochrome P450 monooxygenase, PsiH, to enable the de novo production of psilocybin as well as the biosynthesis of 13 psilocybin derivatives. The substrate promiscuity of the psilocybin biosynthesis pathway was comprehensively probed by using a library of 49 single-substituted indole derivatives, providing biophysical insights to this understudied metabolic pathway and opening the door to the in vivo biological synthesis of a library of previously unstudied pharmaceutical drug candidates., (© 2023 The Authors. Biotechnology and Bioengineering published by Wiley Periodicals LLC.)
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- 2023
- Full Text
- View/download PDF
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