109 results on '"Yinyan Xu"'
Search Results
2. Aromatic Carboxylic Acid Ligand Management for CsPbBr3 Quantum Dot Light-Emitting Solar Cells
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Qian Wang, Yinyan Xu, Lun Zhang, Pujun Niu, Ru Zhou, Mei Lyu, Hongbo Lu, and Jun Zhu
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General Materials Science - Published
- 2022
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3. VOC over 1.2 V for Cs2AgBiBr6 solar cells based on formamidinium acetate additive
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Akang Yang, Lun Zhang, Yinyan Xu, Qian Wang, Mei Lyu, Hongbo Lu, and Jun Zhu
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Electrical and Electronic Engineering ,Condensed Matter Physics ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials - Published
- 2022
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4. Multifunctional Cross‐Linked Polyurethane Polymer as Interface Layer for Efficient and Stable Perovskite Solar Cells
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Hengda Yao, Yinyan Xu, Guobing Zhang, Hongbo Lu, Jun Zhu, Mei Lyu, and Yunsheng Ding
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Biomaterials ,Electrochemistry ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials - Published
- 2023
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5. Guanidinium Thiocyanate Additive Engineering for High-Performance CsPbIBr2 Solar Cells with an Efficiency of 10.90%
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Qian Wang, Yinyan Xu, Lun Zhang, Akang Yang, Tianxin Bai, Feng Liu, Mei Lyu, and Jun Zhu
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Materials Chemistry ,Electrochemistry ,Energy Engineering and Power Technology ,Chemical Engineering (miscellaneous) ,Electrical and Electronic Engineering - Published
- 2022
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6. A nanofibrillar conjugated polymer film as an interface layer for high-performance CsPbIBr2 solar cells with efficiency exceeding 11%
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Qian Wang, Yinyan Xu, Lun Zhang, Pujun Niu, Ru Zhou, Mei Lyu, Guobing Zhang, Hongbo Lu, and Jun Zhu
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Fuel Technology ,Renewable Energy, Sustainability and the Environment ,Energy Engineering and Power Technology - Abstract
A self-assembled nanofibrillar conjugated polymer film is used to optimize the CsPbIBr2/hole-transporting layer interface. The obtained CsPbIBr2 solar cell demonstrates an efficiency of 11.05% with excellent long-term stability.
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- 2022
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7. Corrigendum: Reliable estimation of CD8 T cell inhibition of in vitro HIV-1 replication
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Yinyan Xu, Ann Marie Weideman, Maria Abad-Fernandez, Katie R. Mollan, Sallay Kallon, Shahryar Samir, Joanna A. Warren, Genevieve Clutton, Nadia R. Roan, Adaora A. Adimora, Nancie Archin, JoAnn Kuruc, Cynthia Gay, Michael G. Hudgens, and Nilu Goonetilleke
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Immunology ,Immunology and Allergy - Published
- 2023
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8. Tailoring multifunctional anions to inhibit methanol absorption on a CsPbBr3 quantum dot surface for highly efficient semi-transparent photovoltaics
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Yinyan Xu, Pujun Niu, Lun Zhang, Ziying Wen, Sheng Cheng, Mei Lyu, and Jun Zhu
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General Materials Science - Abstract
A simple anion modification strategy was developed to inhibit MeOH absorption in CsPbBr3 QDs. The CsPbBr3 QD solar cell yielded a PCE of 7.04%, which is the highest PCE reported for CsPbBr3 QD solar cells to date.
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- 2023
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9. Effects of the doping density of charge-transporting layers on regular and inverted perovskite solar cells: numerical simulations
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Jun Zhu, Bo He, Xingyuan Zhang, and Yinyan Xu
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Materials science ,Polymers and Plastics ,Computer simulation ,Field (physics) ,business.industry ,Materials Science (miscellaneous) ,Doping ,Charge (physics) ,Dielectric ,Condensed Matter::Materials Science ,Condensed Matter::Superconductivity ,Electric field ,Materials Chemistry ,Ceramics and Composites ,Quantitative Biology::Populations and Evolution ,Optoelectronics ,Condensed Matter::Strongly Correlated Electrons ,business ,Perovskite (structure) - Abstract
Organic–inorganic hybrid perovskite has achieved great success in the field of solar cells. The charge-transporting layers (CTLs) play an important role on the performance of perovskite solar cells (PSCs). In order to elucidate the influence of the doping density of CTLs on the current–voltage characteristics and power conversion efficiencies (PCEs) of PSCs, numerical simulation was performed for both n-i-p and p-i-n configurations. The simulated results suggest that the doping density of CTLs must maintain a certain value from the aspect of efficient built-in electric field. The reasonable value of the doping density of CTLs is mainly related to their dielectric constant. Effects of the doping density of charge-transporting layers on perovskite solar cells were elucidated by numerical simulations
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- 2021
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10. Human iPSC co-culture model to investigate the interaction between microglia and motor neurons
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Björn F. Vahsen, Elizabeth Gray, Ana Candalija, Kaitlyn M. L. Cramb, Jakub Scaber, Ruxandra Dafinca, Antigoni Katsikoudi, Yinyan Xu, Lucy Farrimond, Richard Wade-Martins, William S. James, Martin R. Turner, Sally A. Cowley, and Kevin Talbot
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Motor Neurons ,Multidisciplinary ,Amyotrophic Lateral Sclerosis ,Induced Pluripotent Stem Cells ,Humans ,Microglia ,Coculture Techniques - Abstract
Motor neuron diseases such as amyotrophic lateral sclerosis are primarily characterized by motor neuron degeneration with additional involvement of non-neuronal cells, in particular, microglia. In previous work, we have established protocols for the differentiation of iPSC-derived spinal motor neurons and microglia. Here, we combine both cell lineages and establish a novel co-culture of iPSC-derived spinal motor neurons and microglia, which is compatible with motor neuron identity and function. Co-cultured microglia express key identity markers and transcriptomically resemble primary human microglia, have highly dynamic ramifications, are phagocytically competent, release relevant cytokines and respond to stimulation. Further, they express key amyotrophic lateral sclerosis-associated genes and release disease-relevant biomarkers. This novel and authentic human model system facilitates the study of physiological motor neuron-microglia crosstalk and will allow the investigation of non-cell-autonomous phenotypes in motor neuron diseases such as amyotrophic lateral sclerosis.
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- 2022
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11. Regulating the Film Growth and Reducing the Defects for Efficient CsPbIBr2 Solar Cells
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Yinyan Xu, Jun Zhu, Lun Zhang, Mei Lyu, Linhua Hu, Zhu Chen, Qian Wang, Ru Zhou, and Yang Huang
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chemistry.chemical_classification ,Materials science ,Tandem ,Band gap ,Energy conversion efficiency ,Salt (chemistry) ,Halide ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,law.invention ,Formamidinium ,chemistry ,Chemical engineering ,law ,General Materials Science ,Crystallization ,0210 nano-technology ,Perovskite (structure) - Abstract
Inorganic lead halide perovskite CsPbIBr2 possesses good stability with a suitable band gap for tandem solar cells. Decreasing the defect concentration and improving the film quality is crucial to further increase the power conversion efficiency of CsPbIBr2 solar cells. Here, the crystallization dynamics of CsPbIBr2 films is regulated by introducing the volatile organic salt, formamidinium acetate (FAAc) into the precursor solution. It is found that FAAc slows the crystallization process of CsPbIBr2 films and pinhole-free films with large grains and smooth surfaces are obtained. The defect concentration of the films is decreased and the nonradiative recombination is significantly inhibited. By improving the film quality, the FAAc remarkably enhances the efficiency of CsPbIBr2 solar cells. The champion device delivers a power conversion efficiency of 9.44% and exhibits higher stability than the reference device. This finding provides an effective strategy for reducing defects, suppressing the recombination, and improving the performance of CsPbIBr2 solar cells.
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- 2021
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12. A histone deacetylase network regulates epigenetic reprogramming and viral silencing in HIV infected cells
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Jackson J Peterson, Catherine A Lewis, Samuel D Burgos, Ashokkumar Manickam, Yinyan Xu, Allison A Rowley, Genevieve Clutton, Brian Richardson, Fei Zou, Jeremy M Simon, David M Margolis, Nilu Goonetilleke, and Edward P Browne
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Approximately 70% of the HIV-1 latent reservoir originates from infections of CD4 T cells that occur in the months near the time of ART initiation, raising the possibility that interventions during this period might prevent reservoir seeding and reduce reservoir size. We identify class 1 histone deacetylase inhibitors (HDACi) as potent agents of latency prevention. Inhibiting HDACs in productively infected cells caused extended maintenance of HIV expression and this activity was associated with persistently elevated H3K9 acetylation and reduced H3K9 methylation at the viral LTR promoter region. HDAC inhibition in HIV-infected CD4 T cells during effector-to-memory transition led to striking changes in the memory phenotype of infected cells. Proviral silencing is accomplished through distinct activities of HDAC1/2 and HDAC3. Thus HDACs regulate a critical gateway process for HIV latency establishment and are required for the development of CD4 T-cell memory subsets that preferentially harbor long-lived, latent provirus.
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- 2022
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13. Diminished Rbfox1 increases vascular constriction by dynamically regulating alternative splicing of CaV1.2 calcium channel in hypertension
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Miaomiao Song, Wei Hou, Atta Ul Mustafa, Pengpeng Li, Jianzhen Lei, Yingying Zhou, Li Ji, Yu Sun, Hongmei Zhou, Yinyan Xu, and Juejin Wang
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Alternative Splicing ,Calcium Channels, L-Type ,Vasoconstriction ,Hypertension ,Myocytes, Smooth Muscle ,Animals ,Calcium ,General Medicine ,Constriction ,Rats, Inbred WKY ,Mesenteric Arteries ,Rats - Abstract
Calcium influx from depolarized CaV1.2 calcium channels triggers the contraction of vascular smooth muscle cells (VSMCs), which is important for maintaining vascular myogenic tone and blood pressure. The function of CaV1.2 channel can be subtly modulated by alternative splicing (AS), and its aberrant splicing involves in the pathogenesis of multiple cardiovascular diseases. The RNA-binding protein Rbfox1 is reported to regulate the AS events of CaV1.2 channel in the neuronal development, but its potential roles in vascular CaV1.2 channels and vasoconstriction remain undefined. Here, we detect Rbfox1 is expressed in rat vascular smooth muscles. Moreover, the protein level of Rbfox1 is dramatically decreased in the hypertensive small arteries from spontaneously hypertensive rats in comparison with normotensive ones from Wistar-Kyoto rats. In VSMCs, Rbfox1 could dynamically regulate the AS of CaV1.2 exons 9* and 33. By whole-cell patch clamp, we identify knockdown of Rbfox1 induces the hyperpolarization of CaV1.2 current–voltage relationship curve in VSMCs. Furthermore, siRNA-mediated knockdown of Rbfox1 increases the K+-induced constriction of rat mesenteric arteries. In summary, our results indicate Rbfox1 modulates vascular constriction by dynamically regulating CaV1.2 alternative exons 9* and 33. Therefore, our work elucidates the underlying mechanisms for CaV1.2 channels regulation and provides a potential therapeutic target for hypertension.
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- 2022
14. EM2D9, A monoclonal antibody against integrin α5β1, has potent antitumor activity on endometrial cancer in vitro and in vivo
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Yinyan Xu, Yi Li, Kang Xing, Guoqing Wang, Jinku Zhang, Zhang Xu, Shucheng Li, Jiahui Pan, Chong Li, Xinyi Feng, and Chengxi Li
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0301 basic medicine ,Integrins ,Cancer Research ,medicine.drug_class ,Mice, SCID ,Tetraspanin 24 ,Endometrium ,Monoclonal antibody ,03 medical and health sciences ,Antineoplastic Agents, Immunological ,0302 clinical medicine ,Cell Movement ,Mice, Inbred NOD ,In vivo ,Cell Line, Tumor ,medicine ,Carcinoma ,Animals ,Humans ,business.industry ,Integrin beta1 ,Endometrial cancer ,Antibodies, Monoclonal ,Cell migration ,medicine.disease ,Xenograft Model Antitumor Assays ,In vitro ,Endometrial Neoplasms ,030104 developmental biology ,Real-time polymerase chain reaction ,medicine.anatomical_structure ,Oncology ,Focal Adhesion Kinase 1 ,030220 oncology & carcinogenesis ,Cancer research ,Female ,business ,Integrin alpha5beta1 ,Signal Transduction - Abstract
Endometrial cancer, a type of primary epithelial malignant tumor in the endometrium, is one of the three most common malignant tumors of the female reproductive system. While the incidence of endometrial cancer has been recently rising, its etiology remains unclear. In this study we found that EM2D9, an independently developed monoclonal antibody, specifically recognized endometrial cancer cells; we further determined that EM2D9 target protein was α5β1. In vitro and in vivo experiments showed that EM2D9 inhibited the migration of endometrial cancer cells. Real-time quantitative PCR results showed that the expression of CD151 mRNA in endometrial carcinoma cells significantly decreased after EM2D9 treatment. We also found that EM2D9 affected the FAK signaling pathway. Collectively, these results shed light on a new mechanism for the development of endometrial carcinoma.
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- 2020
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15. CD8 T Cell Virus Inhibition Assay Protocol
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Yinyan, Xu, Ann Marie, Weideman, Maria, Abad-Fernandez, Katie R, Mollan, Sallay, Kallon, Shahryar, Samir, Joanna A, Warren, Genevieve, Clutton, Nadia, Roan, Adaora A, Adimora, Nancie, Archin, JoAnn, Kuruc, Cindy, Gay, Michael G, Hudgens, and Nilu, Goonetilleke
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Strategy and Management ,Mechanical Engineering ,Methods Article ,Metals and Alloys ,Industrial and Manufacturing Engineering - Abstract
The human immunodeficiency virus (HIV)-1 viral inhibition assay (VIA) measures CD8(+) T cell-mediated inhibition of HIV replication in CD4(+) T cells and is increasingly used for clinical testing of HIV vaccines and immunotherapies. Different VIAs that differ in length of CD8:CD4 T cell culture periods (6–13 days), purity of CD4 cultures [isolated CD4(+) T cells or CD8(+) depleted peripheral blood mononuclear cells (PBMCs)], HIV strains (laboratory strains, isolates, reporter viruses) and read-outs of virus inhibition (p24 ELISA, intracellular measurement of p24, luciferase reporter expression, and viral gag RNA) have been reported. Here, we describe multiple modifications to a 7-day VIA protocol, the most impactful being the introduction of independent replicate cultures for both HIV infected-CD4 (HIV-CD4) and HIV-CD4:CD8 T cell cultures. Virus inhibition was quantified using a ratio of weighted averages of p24(+) cells in replicate cultures and the corresponding 95% confidence intervals. We identify methodological and analysis changes that could be incorporated into other protocols to improve assay reproducibility. We found that in people living with HIV (PLWH) on antiretroviral therapy (ART), CD8 T cell virus inhibition was largely stable over time, supporting the use of this assay and/or analysis methods to examine therapeutic interventions. Graphic abstract: [Image: see text]
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- 2022
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16. V Oc Over 1.2 V for Cs2agbibr6 Solar Cells Based on Formamidinium Acetate Additive
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Akang Yang, Lun Zhang, Yinyan Xu, Qian Wang, Mei Lyu, Hongbo Lu, Mingkui Wang, and Jun Zhu
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- 2022
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17. Regulating film crystallization kinetics with thiourea additive in Cs2AgBiBr6 solar cells
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Lun Zhang, Yinyan Xu, Pujun Niu, Mei Lyu, Hongbo Lu, and Jun Zhu
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Acoustics and Ultrasonics ,Condensed Matter Physics ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Abstract
Cs2AgBiBr6 solar cells have the advantages of non-toxicity and high stability and are regarded as one of the most promising novel solar cells. The crystallization kinetics of the films play a crucial role on the film microstructure and the optoelectronic properties. Herein, thiourea is introduced into the Cs2AgBiBr6 precursor solution as an additive. Fourier transform infrared spectroscopy characterization confirms that thiourea acts as a Lewis base to form an adduct with Ag+, Bi3+. The modified Cs2AgBiBr6 film is used to fabricate solar cells. As a result, the power conversion efficiency and the open-circuit voltage of the optimized device are 1.65% and 1.07 V, significantly higher than the control device (1.04% and 0.89 V). Dark current–voltage, electrochemical impedance spectroscopy, etc, reveal that defects and recombination in the solar cells are inhibited. This work provides an effective method to regulate the crystallization kinetics of Cs2AgBiBr6 film and is helpful for further enhancement of the photovoltaic performance of Cs2AgBiBr6 solar cells.
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- 2023
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18. Prognostic significance of a novel indicator (PSApostd3/PSApre) for PSA recurrence in patients after radical prostatectomy
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Weigang Yan, Zhibo Zheng, Hanzhong Li, Yi Zhou, Qianyue Li, Zhigang Ji, Zhien Zhou, and Yinyan Xu
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0301 basic medicine ,medicine.medical_specialty ,Receiver operating characteristic ,business.industry ,Prostatectomy ,medicine.medical_treatment ,Urology ,Retrospective cohort study ,urologic and male genital diseases ,Logistic regression ,medicine.disease ,03 medical and health sciences ,Prostate-specific antigen ,Exact test ,Prostate cancer ,030104 developmental biology ,0302 clinical medicine ,Oncology ,030220 oncology & carcinogenesis ,medicine ,T-stage ,business - Abstract
Purpose Radical prostatectomy (RP) is a common treatment for prostate cancer, but a fraction of patients may experience PSA recurrence after surgery, manifesting as an elevation in prostate specific antigen (PSA). Vast literature has reported different prognostic factors for PSA recurrence without reaching a consensus. This retrospective study investigated the efficacy of a new indicator in predicting PSA recurrence in patients after RP. Patients and methods From October 2000 to December 2015, 102 PCa patients who underwent laparoscopic prostatectomy in the Urology Department of Peking Union Medical College Hospital were analyzed. We calculated PSApostd3/PSApre, defined as the ratio of the PSA on day 3 postop as the numerator and the pre-operative PSA as the denominator, in these patients to represent PSA decrement after surgery, and investigated its relationship with PSA recurrence during follow-up. Results The receiver operating characteristic (ROC) curve of PSApostd3/PSApre derived a cut-off at 0.453 (sensitivity=0.704, specificity=0.853, P
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- 2019
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19. Sb2S3 solar cells: functional layer preparation and device performance
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Qian Wang, Yinyan Xu, Hongbo Lu, Longzhen Qiu, Zhu Chen, Yunsheng Ding, Yuhan Wei, Wei Yaping, Jianyue Wang, and Jun Zhu
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Fabrication ,Materials science ,business.industry ,Energy conversion efficiency ,Heterojunction ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,law.invention ,Inorganic Chemistry ,Semiconductor ,Vacuum deposition ,law ,Solar cell ,Optoelectronics ,0210 nano-technology ,business ,Mesoporous material ,Layer (electronics) - Abstract
Photovoltaic power generation, as a rapidly growing new energy source, is a technology that uses a semiconductor to convert light energy into electrical energy. Sb2S3 solar cells possess the advantages of simple binary components, abundant resources, nontoxicity, and excellent stability; they have recently attracted extensive investigation interest. Various strategies, such as solution and vacuum deposition, have been used to fabricate functional layers, including Sb2S3 photoactive layers, electron transport layers and hole transport layers. Here, we briefly review the preparation methodologies, morphologies, structures, optoelectronic properties and the corresponding solar cell performance of functional layers for both planar heterojunction solar cells and mesoporous sensitized solar cells. Some viewpoints of further improvement of Sb2S3 solar cell conversion efficiency from the aspect of material fabrication and modification are given.
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- 2019
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20. Regulating the Film Growth and Reducing the Defects for Efficient CsPbIBr
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Zhu, Chen, Qian, Wang, Yinyan, Xu, Ru, Zhou, Lun, Zhang, Yang, Huang, Linhua, Hu, Mei, Lyu, and Jun, Zhu
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Inorganic lead halide perovskite CsPbIBr
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- 2021
21. Reliable Estimation of CD8 T Cell Inhibition of
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Yinyan, Xu, Ann Marie, Weideman, Maria, Abad-Fernandez, Katie R, Mollan, Sallay, Kallon, Shahryar, Samir, Joanna A, Warren, Genevieve, Clutton, Nadia, Roan, Adaora A, Adimora, Nancie, Archin, JoAnn, Kuruc, Cindy, Gay, Michael G, Hudgens, and Nilu, Goonetilleke
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CD4-Positive T-Lymphocytes ,VIA ,JRCSF ,Host Microbial Interactions ,Immunology ,HIV Core Protein p24 ,virus diseases ,HIV ,CD8 ,CD8-Positive T-Lymphocytes ,Virus Replication ,p24 ,Antiviral Agents ,Coculture Techniques ,CD4 ,Cross-Sectional Studies ,Treatment Outcome ,T-cell ,Case-Control Studies ,HIV Seropositivity ,HIV-1 ,Methods ,Humans ,ROC ,Cells, Cultured - Abstract
The HIV-1 viral inhibition assay (VIA) measures CD8 T cell-mediated inhibition of HIV replication in CD4 T cells and is increasingly used for clinical testing of HIV vaccines and immunotherapies. The VIA has multiple sources of variability arising from in vitro HIV infection and co-culture of two T cell populations. Here, we describe multiple modifications to a 7-day VIA protocol, the most impactful being the introduction of independent replicate cultures for both HIV infected-CD4 (HIV-CD4) and HIV-CD4:CD8 T cell cultures. Virus inhibition was quantified using a ratio of weighted averages of p24+ cells in replicate cultures and the corresponding 95% confidence interval. An Excel template is provided to facilitate calculations. Virus inhibition was higher in people living with HIV suppressed on antiretroviral therapy (n=14, mean: 40.0%, median: 43.8%, range: 8.2 to 73.3%; p < 0.0001, two-tailed, exact Mann-Whitney test) compared to HIV-seronegative donors (n = 21, mean: -13.7%, median: -14.4%, range: -49.9 to 20.9%) and was stable over time (n = 6, mean %COV 9.4%, range 0.9 to 17.3%). Cross-sectional data were used to define 8% inhibition as the threshold to confidently detect specific CD8 T cell activity and determine the minimum number of culture replicates and p24+ cells needed to have 90% statistical power to detect this threshold. Last, we note that, in HIV seronegative donors, the addition of CD8 T cells to HIV infected CD4 T cells consistently increased HIV replication, though the level of increase varied markedly between donors. This co-culture effect may contribute to the weak correlations observed between CD8 T cell VIA and other measures of HIV-specific CD8 T cell function.
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- 2021
22. Identification of CPAF as the immunoprevalent antigen of Chlamydia trachomatis
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Yanli Li, Joanna Warren, Taylor Poston, Fiona Shaw, Shayla Conrad, Yinyan Xu, Xiaojing Zheng, Catherine M O’Connell, Sharon L Hillier, Harold C Wiesenfeld, Toni Darville, and Nilu Goonetilleke
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Immunology ,Immunology and Allergy - Abstract
Chlamydia trachomatis (CT) is a common sexually transmitted bacterial infection, that in women can cause pelvic inflammatory disease and infertility. No preventative vaccine has been developed against CT. Immunity to CT is primarily mediated by Th1 CD4+ T cells. We are defining immunoprevalent CT proteins in a well-defined cohort of CT seropositive women with the goal of defining novel vaccine immunogens. We screened 30 women one month after a CT-positive test by cultured IFN-γ ELISpot. Ten-day short-term cell lines (STCL) were generated against overlapping peptides spanning 21 CT antigens. The threshold for a positive CT-specific T cell response (≥ 300 spot-forming cells, SFU, per 106 cells) was defined following a screening of 12 CT seronegative donors. CT− specific T cell responses were detected in 27/30 CT-seropositive women. On average, women harbored T cell responses to two CT proteins (range 0–6). Strikingly, CT858 (CPAF) elicited a T cell response in 16/30 women with an average of 966 IFN-g SFU/106 cells (range 300–3,633 SFU/106 cells). Data to date suggest CPAF-specific T cell responses are predominantly CD4-restricted. In preliminary studies, we have also detected CT-specific T cell responses in men with documented CT infection, including a T cell response to CPAF. We are currently mapping CPAF T cell epitopes and expanding our screen to other CT secreted proteins. In summary, CT858 (CPAF) is an immunoprevalent antigen in women and a promising vaccine immunogen. Supported by UNC Chlamydia Vaccine Initiative (U19AI144181)
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- 2022
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23. Conserved-region MVA vaccines can shift HIV T cell immunodominance in PWH on ART - the M&M Study
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Yinyan Xu, shahryat Samir, Ann Marie K. Weideman, Sallay Kallon, Shayla Conrad, Fiona Shaw, Joanna Warren, Maria Abad Fernandez, Lawrence Fox, David M. Margolis, Michael G. Hudgens, Tomas Hanke, JoAnn Kuruc, Cindy Gay, and Nilu Goonetilleke
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Immunology ,Immunology and Allergy - Abstract
CD8+ T cell immunity is essential to the control of HIV viremia. We examined the safety and immunogenicity of MVA-vectored vaccines expressing highly conserved HIV regions in a first-in-man Phase I study in people living with HIV on ART. Participants received a single intramuscular dose of MVA.tHIVconsv3 (M3), MVA.tHIVconsv4 (M4), combined M3+M4 or saline in a 7:7:7:3 ratio. M3 and M4 span the same 6 HIV regions but differ by approximately 10% of amino acids; a design to increase vaccine coverage of circulating HIV variants. We employed ex vivo IFN-g ELISpot assays to measure changes in HIV-specific T cell magnitude and breadth to M3 and/or M4 immunogens following vaccination. We also examined whether M3, M4 or M3+M4 vaccination increased the ability of CD8+ T cells inhibit HIV in vitro replication. The M&M study is fully enrolled but presently is blinded. Analysis of blinded data show that vaccination was safe and well tolerated. Vaccination induced strong increases in the T cell response to M3, M4 vaccine immunogens producing a 2- to 18-fold increase in magnitude in 16/20 participants tested to date. M3/M4-specific T cell breadth also increased across participants. Vaccine-associated T cell responses mostly remained elevated (>2-fold increase) for at least 70 days post-vaccination visit. Vaccination was also associated with clear and sustained increases in in vitro virus inhibition. The percentage of the total HIV T cell response targeting conserved HIV regions in participants increased on average from 40 to 60% post-vaccination, suggesting M3/M4/M3+4 vaccination successfully produced a sustained shift in T cell immunodominance. Unblinded data will be presented at this meeting. Supported by U01AI131310
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- 2022
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24. Mulberroside A from Cortex Mori Enhanced Gut Integrity in Diabetes
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Tingting Zhao, Hengli Guo, Yinyan Xu, Jing Fu, and Youhua Xu
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Mulberroside A ,medicine.medical_specialty ,Article Subject ,Other systems of medicine ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,In vivo ,Internal medicine ,Diabetes mellitus ,Medicine ,In vitro study ,030304 developmental biology ,Epithelial barrier ,0303 health sciences ,business.industry ,Type 2 Diabetes Mellitus ,medicine.disease ,Cortex (botany) ,Endocrinology ,Complementary and alternative medicine ,chemistry ,030220 oncology & carcinogenesis ,Immunohistochemistry ,business ,RZ201-999 ,Research Article - Abstract
Background. Diabetic endotoxemia has been recognized as one of the hallmarks of type 2 diabetes mellitus (T2DM). Recent findings suggest that gut leak plays a pivotal role in diabetic endotoxemia. Cortex Mori (CM) has been widely applied in China to ameliorate development of T2DM, but its effect on endotoxemia is unknown. Methods. The study was constructed with two parts: (1) in vivo study of CM on diabetic endotoxemia in db/db mice. Eight C57BL/6 mice were set as normal control; (2) in vitro study of mulberroside A (MBA) from CM on diabetic endotoxemia. Potential mechanism of MBA on ameliorating diabetic endotoxemia was also explored. Results. The present study found that CM water extract decreased levels of blood glucose, ameliorated liver and renal damage in db/db mice, and ameliorated diabetic endotoxemia ( p < 0.01 ). We also found that the water extract enhanced gut integrity and decreased gut inflammatory protein ICAM-1 expression in db/db mice as detected by H&E staining and immunohistochemistry methods. In the in vitro study, MBA decreased levels of MDA and ROS induced by LPS ( p < 0.01 ) and enhanced the integrity of gut epithelial barrier ( p < 0.01 ). Conclusions. We found that Cortex Mori and its active component mulberroside A could ameliorate diabetic endotoxemia by preserving gut integrity.
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- 2020
25. Immune escape mechanisms and immunotherapy of urothelial bladder cancer
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Zhao, Yang, Yinyan, Xu, Ying, Bi, Nan, Zhang, Haifeng, Wang, Tianying, Xing, Suhang, Bai, Zongyi, Shen, Faiza, Naz, Zichen, Zhang, Liqi, Yin, Mengran, Shi, Luyao, Wang, Lei, Wang, Shihui, Wang, Lida, Xu, Xin, Su, Song, Wu, and Changyuan, Yu
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immune cells ,fungi ,immune escape ,urothelial bladder cancer ,Review Article ,immunotherapy ,immune checkpoints - Abstract
Background and aim: Urothelial bladder cancer (UBC) is a common malignant tumor of the urogenital system with a high rate of recurrence. Due to the sophisticated and largely unexplored mechanisms of tumorigenesis of UBC, the classical therapeutic approaches including transurethral resection and radical cystectomy combined with chemotherapy have remained unchanged for decades. However, with increasingly in-depth understanding of the microenvironment and the composition of tumor-infiltrating lymphocytes of UBC, novel immunotherapeutic strategies have been developed. Bacillus Calmette-Guerin (BCG) therapy, immune checkpoint blockades, adoptive T cell immunotherapy, dendritic cell (DC) vaccines, etc., have all been intensively investigated as immunotherapies for UBC. This review will discuss the recent progress in immune escape mechanisms and immunotherapy of UBC. Methods: Based on a comprehensive search of the PubMed and ClinicalTrials.gov database, this review included the literature reporting the immune escape mechanisms of UBC and clinical trials assessing the effect of immunotherapeutic strategies on tumor or immune cells in UBC patients published in English between 1999 and 2020. Results: Immune surveillance, immune balance, and immune escape are the three major processes that occur during UBC tumorigenesis. First, the role of immunosuppressive cells, immunosuppressive molecules, immunosuppressive signaling molecules, and DCs in tumor microenvironment is introduced elaborately in the immune escape mechanisms of UBC section. In addition, recent progress of immunotherapies including BCG, checkpoint inhibitors, cytokines, adoptive T cell immunotherapy, DCs, and macrophages on UBC patients are summarized in detail. Finally, the need to explore the mechanisms, molecular characteristics and immune landscape during UBC tumorigenesis and development of novel and robust immunotherapies for UBC are also proposed and discussed. Conclusion: At present, BCG and immune checkpoint blockades have been approved by the US Food and Drug Administration for the treatment of UBC patients and have achieved encouraging therapeutic results, expanding the traditional chemotherapy and surgery-based treatment for UBC. Relevance for patients: Immunotherapy has achieved desirable results in the treatment of UBC, which not only improve the overall survival but also reduce the recurrence rate and the occurrence of treatment-related adverse events of UBC patients. In addition, the indicators to predict the effectiveness and novel therapy strategies, such as combination regimen of checkpoint inhibitor with checkpoint inhibitor or chemotherapy, should be further studied.
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- 2020
26. The HIV-1 latent reservoir is largely sensitive to circulating T cells
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Joanna A Warren, Shuntai Zhou, Yinyan Xu, Matthew J Moeser, Daniel R MacMillan, Olivia Council, Jennifer Kirchherr, Julia M Sung, Nadia R Roan, Adaora A Adimora, Sarah Joseph, JoAnn D Kuruc, Cynthia L Gay, David M Margolis, Nancie Archin, Zabrina L Brumme, Ronald Swanstrom, and Nilu Goonetilleke
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0301 basic medicine ,CD4-Positive T-Lymphocytes ,Male ,Human immunodeficiency virus (HIV) ,HIV Infections ,medicine.disease_cause ,Virus Replication ,Cohort Studies ,immunology ,T-Cell Epitopes ,Epitopes ,0302 clinical medicine ,Immunology and Inflammation ,Biology (General) ,Phylogeny ,Pediatric ,General Neuroscience ,General Medicine ,Viral Load ,Middle Aged ,3. Good health ,Virus Latency ,medicine.anatomical_structure ,Infectious Diseases ,030220 oncology & carcinogenesis ,Proteome ,HIV/AIDS ,Medicine ,Female ,medicine.symptom ,Infection ,hiv cure ,Research Article ,Human ,Adult ,Anti-HIV Agents ,QH301-705.5 ,T cell ,Science ,Inflammation ,Biology ,T cell response ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Clinical Research ,medicine ,Humans ,human ,Aged ,General Immunology and Microbiology ,HIV ,CD8 ,Virology ,Antiretroviral therapy ,030104 developmental biology ,Good Health and Well Being ,inflammation ,Mutation ,HIV-1 ,hiv reservoir ,Biochemistry and Cell Biology - Abstract
HIV-1-specific CD8+ T cells are an important component of HIV-1 curative strategies. Viral variants in the HIV-1 reservoir may limit the capacity of T cells to detect and clear virus-infected cells. We investigated the patterns of T cell escape variants in the replication-competent reservoir of 25 persons living with HIV-1 (PLWH) durably suppressed on antiretroviral therapy (ART). We identified all reactive T cell epitopes in the HIV-1 proteome for each participant and sequenced HIV-1 outgrowth viruses from resting CD4+ T cells. All non-synonymous mutations in reactive T cell epitopes were tested for their effect on the size of the T cell response, with a≥50% loss defined as an escape mutation. The majority (68%) of T cell epitopes harbored no detectable escape mutations. These findings suggest that circulating T cells in PLWH on ART could contribute to control of rebound and could be targeted for boosting in curative strategies.
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- 2020
27. Author response: The HIV-1 latent reservoir is largely sensitive to circulating T cells
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Joanna A Warren, Shuntai Zhou, Yinyan Xu, Matthew J Moeser, Daniel R MacMillan, Olivia Council, Jennifer Kirchherr, Julia M Sung, Nadia R Roan, Adaora A Adimora, Sarah Joseph, JoAnn D Kuruc, Cynthia L Gay, David M Margolis, Nancie Archin, Zabrina L Brumme, Ronald Swanstrom, and Nilu Goonetilleke
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business.industry ,Human immunodeficiency virus (HIV) ,Medicine ,business ,medicine.disease_cause ,Virology - Published
- 2020
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28. CsPbBr
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Yaping, Wei, Yinyan, Xu, Qian, Wang, Jianyue, Wang, Hongbo, Lu, and Jun, Zhu
- Abstract
Anisotropic films composed of aligned CsPbBr
- Published
- 2020
29. Enhancing the performance of CsPbIBr2 solar cells through zinc halides doping
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Lun Zhang, Jun Zhu, Yinyan Xu, Akang Yang, Mei Lyu, Zhu Chen, Qian Wang, Ru Zhou, and Hongbo Lu
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Photoluminescence ,Materials science ,Mechanical Engineering ,Doping ,Metals and Alloys ,chemistry.chemical_element ,Halide ,One-Step ,Zinc ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials ,Crystallinity ,chemistry ,Chemical engineering ,Mechanics of Materials ,Materials Chemistry ,Perovskite (structure) - Abstract
B-site doping is an effective strategy to improve the performance of inorganic perovskite solar cells. Zinc halides (ZnX2, X I, Br, Cl) doped CsPbIBr2 solar cells were prepared by simply introducing ZnX2 salts into the precursor solution for one step spin-coating process. The doped inorganic perovskite films exhibit enhanced crystallinity and improved surface morphology. More over, the photoluminescence and single-carrier device characterizations confirm that the internal defect density of CsPbIBr2 films decreases remarkably after ZnX2 doping and the non-radiative recombination is suppressed. The CsPbIBr2 solar cells based on the ZnI2 doped films achieve a champion efficiency of 8.15%, outperforming that (6.93%) of the pristine counterpart.
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- 2021
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30. Strontium‐Doped CsPbI 3 Quantum Dots as an Interfacial Layer for Efficient Inorganic Perovskite Solar Cells
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Feng Liu, Mingkui Wang, Lun Zhang, Qian Wang, Jun Zhu, Mei Lyu, Tianxin Bai, Yinyan Xu, and Hongbo Lu
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Strontium ,Materials science ,business.industry ,Doping ,Energy Engineering and Power Technology ,chemistry.chemical_element ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,law.invention ,chemistry ,Quantum dot ,law ,Solar cell ,Optoelectronics ,Electrical and Electronic Engineering ,business ,Layer (electronics) ,Perovskite (structure) - Published
- 2021
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31. Neurocan, an extracellular chondroitin sulfate proteoglycan, stimulates neuroblastoma cells to promote malignant phenotypes
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Atsushi Narita, Shinichi Kiyonari, Takehiko Kamijo, Zhendong Su, Kenji Kadomatsu, Yoshiyuki Takahashi, Dongliang Cao, Satoshi Kishida, Shoma Tsubota, Miki Ohira, Kazuma Sakamoto, and Yinyan Xu
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0301 basic medicine ,CSPG ,Cell division ,biology ,tumor sphere ,medicine.disease ,Cell biology ,neuroblastoma ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Oncology ,chemistry ,Chondroitin sulfate proteoglycan ,Neurocan ,Neuroblastoma ,Cancer cell ,biology.protein ,medicine ,Versican ,Chondroitin sulfate ,NCAN ,Aggrecan ,Research Paper - Abstract
Neurocan (NCAN), a secreted chondroitin sulfate proteoglycan, is one of the major inhibitory molecules for axon regeneration in nervous injury. However, its role in cancer is not clear. Here we observed that high NCAN expression was closely associated with the unfavorable outcome of neuroblastoma (NB). NCAN was also highly and ubiquitously expressed in the early lesions and terminal tumor of TH-MYCN mice, a NB model. Interestingly, exogenous NCAN (i.e., overexpression, recombinant protein and conditioned medium) transformed adherent NB cells into spheres whose malignancies in vitro (anchorage-independent growth and chemoresistance) and in vivo (xenograft tumor growth) were potentiated. Both chondroitin sulfate sugar chains and NCAN's core protein were essential for the sphere formation. The CSG3 domain was essential in the moiety of NCAN. Our comprehensive microarray analysis and RT-qPCR of mRNA expression suggested that NCAN treatment promoted cell division, and urged cells to undifferentiated state. The knockdown of NCAN in tumor sphere cells cultured from TH-MYCN mice resulted in growth suppression in vitro and in vivo. Our findings suggest that NCAN, which stimulates NB cells to promote malignant phenotypes, is an extracellular molecule providing a growth advantage to cancer cells.
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- 2017
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32. Interval dosing with the HDAC inhibitor vorinostat effectively reverses HIV latency
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Nancie M. Archin, Jennifer L. Kirchherr, Julia A.M. Sung, Genevieve Clutton, Katherine Sholtis, Yinyan Xu, Brigitte Allard, Erin Stuelke, Angela D. Kashuba, Joann D. Kuruc, Joseph Eron, Cynthia L. Gay, Nilu Goonetilleke, and David M. Margolis
- Subjects
Adult ,CD4-Positive T-Lymphocytes ,Male ,0301 basic medicine ,Time Factors ,genetic structures ,Anti-HIV Agents ,HIV Infections ,Pharmacology ,Hydroxamic Acids ,Drug Administration Schedule ,03 medical and health sciences ,Immune system ,In vivo ,Humans ,Medicine ,Dosing ,Latency (engineering) ,Vorinostat ,Aged ,business.industry ,RNA ,General Medicine ,Middle Aged ,Virus Latency ,Histone Deacetylase Inhibitors ,Treatment Outcome ,030104 developmental biology ,HIV-1 ,RNA, Viral ,Female ,Virus Activation ,sense organs ,Histone deacetylase ,Clinical Medicine ,business ,Ex vivo ,medicine.drug - Abstract
Background The histone deacetylase (HDAC) inhibitor vorinostat (VOR) can increase HIV RNA expression in vivo within resting CD4+ T cells of aviremic HIV+ individuals. However, while studies of VOR or other HDAC inhibitors have reported reversal of latency, none has demonstrated clearance of latent infection. We sought to identify the optimal dosing of VOR for effective serial reversal of HIV latency. Methods In a study of 16 HIV-infected, aviremic individuals, we measured resting CD4+ T cell-associated HIV RNA ex vivo and in vivo following a single exposure to VOR, and then in vivo after a pair of doses separated by 48 or 72 hours, and finally following a series of 10 doses given at 72-hour intervals. Results Serial VOR exposures separated by 72 hours most often resulted in an increase in cell-associated HIV RNA within circulating resting CD4+ T cells. VOR was well tolerated by all participants. However, despite serial reversal of latency over 1 month of VOR dosing, we did not observe a measurable decrease (>0.3 log10) in the frequency of latent infection within resting CD4+ T cells. Conclusions These findings outline parameters for the experimental use of VOR to clear latent infection. Latency reversal can be achieved by VOR safely and repeatedly, but effective depletion of persistent HIV infection will require additional advances. In addition to improvements in latency reversal, these advances may include the sustained induction of potent antiviral immune responses capable of recognizing and clearing the rare cells in which HIV latency has been reversed. Trial registration Clinicaltrials.gov NCT01319383. Funding NIH grants U01 AI095052, AI50410, and P30 CA016086 and National Center for Advancing Translational Sciences grant KL2 TR001109.
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- 2017
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33. Let-7i-Induced Atg4B Suppression Is Essential for Autophagy of Placental Trophoblast in Preeclampsia
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Yanni Chen, Juan Xie, Yinyan Xu, Xinyan Huang, Li Wang, and Jing Fu
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0301 basic medicine ,Regulation of gene expression ,medicine.medical_specialty ,Physiology ,Clinical Biochemistry ,Cell ,Autophagy ,Trophoblast ,Cell Biology ,Biology ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,Endocrinology ,Cell culture ,030220 oncology & carcinogenesis ,Placenta ,Internal medicine ,embryonic structures ,medicine ,Gene silencing ,Signal transduction - Abstract
Autophagy, identified as type II programmed cell death, has already been known to be involved in the pathophysiology of preeclampsia (PE), which is a gestational disease with high morbidity. The present study aims to investigate the functional role of let-7i, a miRNA, in trophoblastic autophagy. Placental tissue used in this study was collected from patients with severe preeclampsia (SPE) or normal pregnant women. A decreased level of let-7i was found in placenta of SPE. In addition, autophagic vacuoles were observed in SPE and the expression of microtubule associated protein 1 light chain 3 (LC3) II/I was elevated. In vitro, let-7i mimics suppressed the autophagic activities in human HTR-8/SVneo trophoblast cell line (HTR-8) and human placental choriocarcinoma cell line JEG-3, whereas let-7i inhibitor enhanced the activities. As a potential target of let-7i, autophagy-related 4B cysteine peptidase (Atg4B) had an increased expression level in SPE. As expected, the increased expression of Atg4B was negatively regulated by let-7i using dual luciferase reporter assay. Furthermore, these trophoblast-like cells transfected with the let-7i mimic or inhibitors resulted in a significant change of Atg4B in both mRNA and protein level. More importantly, Atg4B overexpression could partly reverse let-7i mimic-reduced LC3II/I levels; whereas Atg4B silencing partly attenuated let-7i inhibitor-induced the level of LC3II/I expression. Taken together, these findings suggest that let-7i is able to regulate autophagic activity via regulating Atg4B expression, which might contribute to the pathogenesis of PE. J. Cell. Physiol. 232: 2581-2589, 2017. © 2016 Wiley Periodicals, Inc.
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- 2017
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34. Selective Excitation of CdSe/CdS Dot‐in‐Rod Nanocrystals and Distinct Roles of Electrons and Holes in Photophysical and Photochemical Interactions with Ambient Air
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Jun Zhu, Rongxin Wang, Xiaotian Ge, Yinyan Xu, Jiamin Wang, Shijie Xu, Changcheng Zheng, Jiqiang Ning, and Qing Peng
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Photoluminescence ,Materials science ,Nanocrystal ,Electron ,Selective excitation ,Condensed Matter Physics ,Photochemistry ,Electronic, Optical and Magnetic Materials ,Ambient air - Published
- 2021
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35. CD8 co-receptor links T cell avidity and metabolism
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Genevieve Tyndale Clutton, Ann Marie Weideman, Sallay Kallon, Yinyan Xu, Joanna Warren, Erik Lenarcic, Lin Lin, Olivia Council, Michael Muehlbauer, Adam Mincey, Demitrius Hill, Nathaniel Moorman, null RolTisch, Christopher Newgard, James Bain, Paul Armistead, Michael Hudgens, and Nilu Goonetilleke
- Subjects
Immunology ,Immunology and Allergy - Abstract
This study investigated the mechanistic basis behind the reported superior efficacy of high-avidity CD8 T cells. CMV and HIV are both chronic viral infections, but while CMV-specific CD8 T cells can mediate lifelong viral control, in untreated HIV infection HIV-specific CD8 T cells progressively lose function. Using in vitro studies of human cells, we show that avidity-dependent downregulation of the CD8 co-receptor directly programs metabolism, due to a novel association between CD8 and the glucose transporter GLUT1. We used flow cytometry to profile ex vivo and virus-specific CD8 T cells from HIV-infected individuals on antiretroviral therapy. Ex vivo, cells expressing low levels of CD8 (CD8dim) expressed more CD69 but less cell surface GLUT1, and took up less glucose (2-NBDG) than CD8bright T cells. Following antigen stimulation, CD3, CD8, and GLUT1 were downregulated from the cell surface in an avidity-dependent manner. CMV-specific CD8 T cells, which were of higher avidity, downregulated these proteins to a greater extent than lower-avidity HIV-specific CD8 T cells. GLUT1 downregulation strongly correlated with CD8 but not CD3 downregulation. Antibody-mediated downregulation of CD8 from the cell surface resulted in reduced glucose uptake and increased fatty acid (Bodipy) uptake, independent of CD3. Finally, CD3, CD8, and GLUT1 downregulation by HIV-specific CD8 T cells was impaired following viral escape mutations that reduced CD8 T cell avidity. We confirmed this finding in a transduction setting with a single clonal TCR. Our data reveal a novel function of the CD8 co-receptor, linking the avidity and metabolism of CD8 T cells.
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- 2021
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36. Photoluminescence and electroluminescence properties of aligned CsPbBr3 nanowire films prepared by off-center spin-coating
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Yinyan Xu, Qian Wang, Hongbo Lu, Jun Zhu, Wei Yaping, Longzhen Qiu, and Jianyue Wang
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Materials science ,Photoluminescence ,Nanowire ,Physics::Optics ,02 engineering and technology ,Electroluminescence ,010402 general chemistry ,01 natural sciences ,Nanomaterials ,law.invention ,Condensed Matter::Materials Science ,law ,Materials Chemistry ,Diode ,Spin coating ,Liquid-crystal display ,business.industry ,Mechanical Engineering ,Metals and Alloys ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Polarization (waves) ,0104 chemical sciences ,Electronic, Optical and Magnetic Materials ,Mechanics of Materials ,Optoelectronics ,0210 nano-technology ,business - Abstract
The researches on polarized electroluminescence have attracted attention in recent years because of their potential applications in the field of liquid crystal display polarized backlights. The key to producing polarized light is the ordered orientation of anisotropic emission materials. Perovskite nanowires are an anisotropic one-dimensional nanomaterial with excellent optical properties. We used the off-center spin-coating method to fabricate the aligned CsPbBr3 nanowire films and obtained a photoluminescence polarization ratio of 0.46. The light-emitting diodes using the aligned nanowire film as the emission layer was fabricated and the device performance investigated.
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- 2020
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37. CD3 and CD8 coreceptor down-modulation are inversely associated with CD8 T cell functional avidity in humans
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Genevieve Tyndale Clutton, Sallay Kallon, Ann Weideman, Yinyan Xu, Joanna Warren, Olivia Council, Damir Alzhanov, Hannah Thaxton, Michael Hudgens, Joann Kuruc, and Nilu Goonetilleke
- Subjects
Immunology ,Immunology and Allergy - Abstract
This study investigated the function of memory CD8 T cells in HIV-infected people durably suppressed on antiretroviral therapy (HIV+ cART). We assessed bulk and virus-specific memory CD8 T cells in HIV+ cART and HIV-seronegative individuals (HIV−) by flow cytometry. We observed a population of CD3+ CD8dim CD14− CD16− (CD8dim) T cells that was expanded as a percentage of total CD8 T cells in both HIV− and CMV-seropositive individuals. Bulk memory CD8dim T cells expressed significantly higher CD69 and less MHC Class I and CD127 ex vivo than CD8bright T cells, suggesting recent activation. CD8dim T cells expressed less GLUT1 and PGC-1α and took up less glucose (2-NBDG) and lipid (Bodipy) than CD8bright T cells, indicating relatively lower metabolic activity. Multimer reactivity was used to examine CMV-, EBV- and HIV-specific CD8 T cells ex vivo. Virus-specific populations were consistently CD8high. However, after peptide stimulation, antigen-specific CD8 T cells down-regulated CD3 and CD8. CMV-specific CD8 T cells down-regulated CD3 and CD8 more than HIV-specific cells. CD3 and CD8 downregulation were strongly correlated with the functional avidity of the response. A strong correlation between GLUT1 down-regulation and CD8 down-regulation was also observed, suggesting an association between CD8 expression and metabolic activity. These results suggest that the expanded CD8dim population in HIV+ cART individuals, who are >90% CMV-seropositive, may be driven by ongoing activation of high-avidity CMV-specific CD8 T cells. They also suggest that different virus-specific CD8 T cell populations differentially downregulate components of the TCR complex and metabolism after antigen stimulation, possibly to avoid excessive activation.
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- 2020
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38. Inferring tumor subclonality
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Wes Sanders, Ralph S. Baric, Heather A. Vincent, Angela Wahl, Nathaniel J. Moorman, J. Victor Garcia, Erik M. Lenarcic, Allison Boone, Miriam Braunstein, Christian R. Aguilera-Sandoval, Yinyan Xu, Nilu Goonetilleke, Paul A. Dayton, William H. Hildebrand, Maria Abad Fernandez, Chandrav De, Adam S. Cockrell, Claire Johnson, Raymond J. Pickles, Nathaniel J. Schramm, Laura Rank, Isabel G. Newsome, and Rachel A. Cleary
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Male ,Cytomegalovirus ,Mice, SCID ,Antibodies, Viral ,Virus Replication ,Applied Microbiology and Biotechnology ,Biochemistry ,Mice ,0302 clinical medicine ,Neoplasms ,Lung ,Genetics ,0303 health sciences ,Zika Virus Infection ,Immunohistochemistry ,3. Good health ,Haematopoiesis ,medicine.anatomical_structure ,Mutation (genetic algorithm) ,Middle East Respiratory Syndrome Coronavirus ,Cytokines ,Molecular Medicine ,Female ,Coronavirus Infections ,Biotechnology ,Biomedical Engineering ,Antigen-Presenting Cells ,Bioengineering ,Biology ,Tropism ,Article ,Virus ,03 medical and health sciences ,In vivo ,medicine ,Animals ,Humans ,Antigen-presenting cell ,Molecular Biology ,030304 developmental biology ,Mesenchymal stem cell ,Zika Virus ,Cell Biology ,Virology ,Disease Models, Animal ,Gene Expression Regulation ,Mutation ,Humanized mouse ,Bone marrow ,030217 neurology & neurosurgery - Abstract
A major limitation of current humanized mouse models is that they primarily enable the analysis of human-specific pathogens that infect hematopoietic cells. However, most human pathogens target other cell types, including epithelial, endothelial and mesenchymal cells. Here, we show that implantation of human lung tissue, which contains up to 40 cell types, including nonhematopoietic cells, into immunodeficient mice (lung-only mice) resulted in the development of a highly vascularized lung implant. We demonstrate that emerging and clinically relevant human pathogens such as Middle East respiratory syndrome coronavirus, Zika virus, respiratory syncytial virus and cytomegalovirus replicate in vivo in these lung implants. When incorporated into bone marrow/liver/thymus humanized mice, lung implants are repopulated with autologous human hematopoietic cells. We show robust antigen-specific humoral and T-cell responses following cytomegalovirus infection that control virus replication. Lung-only mice and bone marrow/liver/thymus-lung humanized mice substantially increase the number of human pathogens that can be studied in vivo, facilitating the in vivo testing of therapeutics.
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- 2020
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39. Prognostic significance of a novel indicator (PSA
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Zhien, Zhou, Yinyan, Xu, Qianyue, Li, Weigang, Yan, Yi, Zhou, Zhibo, Zheng, Hanzhong, Li, and Zhigang, Ji
- Subjects
prostate-specific antigen ,prognosis ,urologic and male genital diseases ,prostate cancer ,Original Research - Abstract
Purpose Radical prostatectomy (RP) is a common treatment for prostate cancer, but a fraction of patients may experience PSA recurrence after surgery, manifesting as an elevation in prostate specific antigen (PSA). Vast literature has reported different prognostic factors for PSA recurrence without reaching a consensus. This retrospective study investigated the efficacy of a new indicator in predicting PSA recurrence in patients after RP. Patients and methods From October 2000 to December 2015, 102 PCa patients who underwent laparoscopic prostatectomy in the Urology Department of Peking Union Medical College Hospital were analyzed. We calculated PSApostd3/PSApre, defined as the ratio of the PSA on day 3 postop as the numerator and the pre-operative PSA as the denominator, in these patients to represent PSA decrement after surgery, and investigated its relationship with PSA recurrence during follow-up. Results The receiver operating characteristic (ROC) curve of PSApostd3/PSApre derived a cut-off at 0.453 (sensitivity=0.704, specificity=0.853, P
- Published
- 2018
40. Markedly High Plasma Thrombopoietin (TPO) Level is a Predictor of Poor Response to Immunosuppressive Therapy in Children With Acquired Severe Aplastic Anemia
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Shaimaa Elmahdi, N Nishio, Atsushi Narita, Yinyan Xu, Yusuke Okuno, Hideki Muramatsu, Olfat Ismael, Yoshiyuki Takahashi, Xinan Wang, Seiji Kojima, and Asahito Hama
- Subjects
Response rate (survey) ,medicine.medical_specialty ,Multivariate analysis ,Globulin ,biology ,business.industry ,Proportional hazards model ,Hematology ,Odds ratio ,medicine.disease ,Gastroenterology ,Confidence interval ,03 medical and health sciences ,0302 clinical medicine ,Oncology ,030220 oncology & carcinogenesis ,Internal medicine ,Pediatrics, Perinatology and Child Health ,Immunology ,medicine ,biology.protein ,Aplastic anemia ,business ,Thrombopoietin ,030215 immunology - Abstract
Background Immunosuppressive therapy (IST) is commonly used for patients with acquired severe aplastic anemia (SAA). Because the clinical response rate and therapeutic outcome for individual patients to IST varies, an in vitro test that identifies potential responders would be desirable. Methods We evaluated the relationship between thrombopoietin (TPO) levels at the time of diagnosis and the response to IST at 6 months in 85 children (median age, 9.0 years; range, 1.0–15.5 years) with acquired SAA using enzyme-linked immunosorbent assay. Thirty-one age-matched healthy individuals were used as controls. All patients received antithymocyte globulin and cyclosporine. Results Overall, 39 patients (45.9%) responded to IST at 6 months. TPO plasma levels were significantly higher in nonresponders than in responders (1,555.8 vs. 1,284.7 pg/ml, respectively; P = 0.031). Multivariate analysis identified the TPO levels of >1,796.7 pg/ml (TPO-high group, 20 patients; odds ratio (OR), 8.285; 95% confidence interval (CI), 2.114–32.904; P = 0.002) as independent poor predictors of IST response at 6 months. Moreover, the TPO-high group was associated with lower 5-year failure-free survival rates (30% vs. 68%, P = 0.012) compared with the TPO-low group. Conclusion The measurement of TPO levels at diagnosis is useful for predicting the response to IST in children with SAA and may help in decision making.
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- 2015
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41. A Cytokine-Based Diagnostic Program in Pediatric Aplastic Anemia and Hypocellular Refractory Cytopenia of Childhood
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Xinan Wang, Seiji Kojima, N Nishio, Masafumi Ito, Yusuke Okuno, Daisuke Hasegawa, Yoshiyuki Takahashi, Olfat Ismael, Hideki Muramatsu, Shaimaa Elmahdi, Asahito Hama, Nozomu Kawashima, Yinyan Xu, Atsushi Manabe, and Atsushi Narita
- Subjects
medicine.medical_specialty ,Cytopenia ,business.industry ,Myelodysplastic syndromes ,Hematology ,Odds ratio ,medicine.disease ,Gastroenterology ,03 medical and health sciences ,0302 clinical medicine ,Oncology ,Refractory ,hemic and lymphatic diseases ,030220 oncology & carcinogenesis ,Internal medicine ,Pediatrics, Perinatology and Child Health ,Immunology ,medicine ,Aplastic anemia ,Differential diagnosis ,Prospective cohort study ,business ,Thrombopoietin ,030215 immunology - Abstract
Background Distinguishing hypocellular refractory cytopenia of childhood (RCC) from aplastic anemia (AA) is challenging. Thus far, no studies have compared the cytokine profiles in patients with AA to those with hypocellular RCC. In the present study, we addressed whether thrombopoietin (TPO) and interleukin 17 (IL-17) plasma levels are useful for differentiating between the two diseases. Methods We measured the endogenous plasma concentrations of TPO and IL-17 in 29 patients with AA, 34 patients with hypocellular RCC, and 31 healthy controls using sensitive enzyme-linked immunosorbent assays. Results The TPO and IL-17 plasma levels were significantly lower in patients with hypocellular RCC than in patients with AA (P < 0.001 and P = 0.007, respectively). The multivariate logistic regression analysis identified moderate disease severity, TPO levels of
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- 2015
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42. Integrated molecular profiling of juvenile myelomonocytic leukemia
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Xinan Wang, Asahito Hama, Nozomu Kawashima, Kyogo Suzuki, Masashi Sanada, Atsushi Narita, Hiroyuki Aburatani, Yuichi Shiraishi, Arata Watanabe, Hideki Muramatsu, Seishi Ogawa, Genta Nagae, Seiji Kojima, Kenichi Yoshida, Masashi Hirayama, Hiroko Tanaka, Toshihide Ueno, Yoshiyuki Takahashi, Satoru Miyano, Hirotoshi Sakaguchi, Yusuke Okuno, Hiroyuki Mano, Norihiro Murakami, Masafumi Ito, Kenichi Chiba, and Yinyan Xu
- Subjects
0301 basic medicine ,Neuroblastoma RAS viral oncogene homolog ,Male ,Adolescent ,Oncogene Proteins, Fusion ,Immunology ,Gene mutation ,Biochemistry ,03 medical and health sciences ,0302 clinical medicine ,Crizotinib ,hemic and lymphatic diseases ,ROS1 ,Medicine ,Humans ,Child ,Protein Kinase Inhibitors ,Myeloproliferative neoplasm ,Cell Proliferation ,Juvenile myelomonocytic leukemia ,business.industry ,Gene Expression Profiling ,Myeloid leukemia ,Infant ,Cell Biology ,Hematology ,DNA, Neoplasm ,DNA Methylation ,medicine.disease ,Leukemia ,030104 developmental biology ,Leukemia, Myelomonocytic, Juvenile ,030220 oncology & carcinogenesis ,Child, Preschool ,Mutation ,Cancer research ,Female ,business ,medicine.drug ,Genome-Wide Association Study - Abstract
Juvenile myelomonocytic leukemia (JMML), a rare and aggressive myelodysplastic/myeloproliferative neoplasm that occurs in infants and during early childhood, is characterized by excessive myelomonocytic cell proliferation. More than 80% of patients harbor germ line and somatic mutations in RAS pathway genes (eg, PTPN11, NF1, NRAS, KRAS, and CBL), and previous studies have identified several biomarkers associated with poor prognosis. However, the molecular pathogenesis of 10% to 20% of patients and the relationships among these biomarkers have not been well defined. To address these issues, we performed an integrated molecular analysis of samples from 150 JMML patients. RNA-sequencing identified ALK/ROS1 tyrosine kinase fusions (DCTN1-ALK, RANBP2-ALK, and TBL1XR1-ROS1) in 3 of 16 patients (18%) who lacked canonical RAS pathway mutations. Crizotinib, an ALK/ROS1 inhibitor, markedly suppressed ALK/ROS1 fusion-positive JMML cell proliferation in vitro. Therefore, we administered crizotinib to a chemotherapy-resistant patient with the RANBP2-ALK fusion who subsequently achieved complete molecular remission. In addition, crizotinib also suppressed proliferation of JMML cells with canonical RAS pathway mutations. Genome-wide methylation analysis identified a hypermethylation profile resembling that of acute myeloid leukemia (AML), which correlated significantly with genetic markers with poor outcomes such as PTPN11/NF1 gene mutations, 2 or more genetic mutations, an AML-type expression profile, and LIN28B expression. In summary, we identified recurrent activated ALK/ROS1 fusions in JMML patients without canonical RAS pathway gene mutations and revealed the relationships among biomarkers for JMML. Crizotinib is a promising candidate drug for the treatment of JMML, particularly in patients with ALK/ROS1 fusions.
- Published
- 2017
43. Berberine-induced apoptosis in human breast cancer cells is mediated by reactive oxygen species generation and mitochondrial-related apoptotic pathway
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Juan Xie, Yanni Chen, Yinyan Xu, Jing Fu, Mingming Xi, Xinyan Huang, and Li Wang
- Subjects
Berberine ,Cell Survival ,Estrogen receptor ,Apoptosis ,Breast Neoplasms ,Biology ,medicine.disease_cause ,chemistry.chemical_compound ,Downregulation and upregulation ,medicine ,Humans ,Membrane Potential, Mitochondrial ,chemistry.chemical_classification ,Reactive oxygen species ,Caspase 3 ,General Medicine ,Cell biology ,Proto-Oncogene Proteins c-bcl-2 ,chemistry ,Cancer cell ,MCF-7 Cells ,Female ,Signal transduction ,Reactive Oxygen Species ,Oxidative stress ,Signal Transduction - Abstract
Berberine has drawn extensive attention toward their wide range of biochemical and pharmacological effects, including antineoplastic effect in recent years, but the precise mechanisms remain unclear. Treatment of human breast cancer cells (MCF-7 and MDA-MB-231 cells) with berberine induced inhibition of cell viability in concentration- and time-dependent manner irrespective of their estrogen receptor (ER) expression. Hoechst33342 staining confirmed berberine induced breast cancer cell apoptosis in time-dependent manner. Because apoptosis induction is considered to be a crucial strategy for cancer prevention and therapy, berberine may be an effective chemotherapeutic agent against breast cancer. To explore the precise mechanism, berberine-induced oxidative stress and mitochondrial-related apoptotic pathway in human breast cancer cells were investigated in this study. In both MCF-7 and MDA-MB-231 cells, berberine increased the production of reactive oxygen species (ROS), which activated the pro-apoptotic JNK signaling. Phosphorylated JNK triggered mitochondria membrane potential (ΔΨm) depolarization and downregulation expression of anti-apoptotic protein Bcl-2 concomitant with the upregulation expression of pro-apoptotic protein Bax. Downregulation of anti-apoptotic Bcl-2 family protein in parallel with loss of ΔΨm, leading to increased the release of cytochrome c and apoptosis-inducing factor (AIF) from mitochondria, and eventually triggered the caspase-dependent and caspase-independent apoptosis. Taken together, our study reveled that berberine exerted an antitumor activity in breast cancer cells by reactive oxygen species generation and mitochondrial-related apoptotic pathway. These finding provide an insight into the potential of berberine for breast cancer therapy.
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- 2014
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44. Aldehyde dehydrogenase-2 polymorphism contributes to the progression of bone marrow failure in children with idiopathic aplastic anaemia
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Xinan Wang, Hideki Muramatsu, Seiji Kojima, Atsushi Narita, Koji Nakanishi, Asahito Hama, Nozomu Kawashima, Yoshiyuki Takahashi, Yinyan Xu, Sayoko Doisaki, and Hirotoshi Sakaguchi
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Male ,Idiopathic aplastic anaemia ,Adolescent ,Pancytopenia ,Aldehyde dehydrogenase ,Bone Marrow ,medicine ,Humans ,Child ,ALDH2 ,Polymorphism, Genetic ,biology ,business.industry ,Aldehyde Dehydrogenase, Mitochondrial ,Bone marrow failure ,Anemia, Aplastic ,Infant ,Hematology ,Aldehyde Dehydrogenase ,medicine.disease ,Child, Preschool ,Immunology ,Disease Progression ,biology.protein ,Female ,business - Published
- 2014
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45. High Natural Killer Cell Count at Diagnosis Predicts a Good Response to Immunosuppressive Therapy in Aplastic Anemia
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Yusuke Okuno, Seiji Kojima, Eri Nishikawa, Nobuhiro Nishio, Hirohito Yamazaki, Shinji Nakao, Yinyan Xu, Hideki Muramatsu, Atsushi Narita, Motoharu Hamada, Nozomu Kawashima, Daisuke Ichikawa, and Yoshiyuki Takahashi
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biology ,business.industry ,Immunology ,Cell Biology ,Hematology ,Pharmacology ,medicine.disease ,Acquired immune system ,Biochemistry ,CD19 ,Transplantation ,Immune system ,medicine ,biology.protein ,IL-2 receptor ,Aplastic anemia ,business ,Interleukin-7 receptor ,CD8 - Abstract
Introduction: Aplastic anemia (AA) is an autoimmune-mediated disease with a complex mechanism. Innate as well as acquired immune system have been considered to participate in its pathogenesis. Although several studies have demonstrated the role of T and B cells in AA, there is limited research focusing on natural killer (NK) cells, which are important in innate and adaptive immune system. NK cells interact with T cells and alter their immune responses in a variety of diseases. Recent investigation suggests that NK cells serve immunoregulatory roles by attenuating autologous CD8+ T-cell response in AA (Chen et al. Cell Immunol 335:6-14, 2019). Here we assessed the kinetics of NK cells before and after immunosuppressive therapy (IST) in patients with AA to determine the association between NK cells and clinical courses. Methods: Patients with severe AA, in Japan, who required IST as first-line therapy were prospectively enrolled between May 2012 and October 2017. The IST regimen comprised rabbit anti-thymocyte globulin (ATG, thymoglobulin®, 2.5 or 3.5 mg/kg/day for 5 days), cyclosporine A (6 mg/kg/day for minimum 6 months), and methylprednisolone (2 mg/kg/day for 5 days) with subsequent tapering of the dose for 28 days. Flow cytometry was used to assess lymphocyte subsets, consisting of CD3+, CD4+, and CD8+ T cells, CD19+ B cells, CD56+ NK cells, and CD4+CD25+CD127+ regulatory T cells (Tregs), before and after ATG administration on days 0, 14, 28, 60, 90, 120, and 180. Plasma rabbit ATG levels were measured using a rabbit IgG ELISA kit on days 14 and 28 (Bethyl Laboratories, Montgomery, TX, USA). Receiver-operator characteristic (ROC) curves were generated to differentiate between response and no response to IST. Results: A total of 81 patients (aged 1.7-67.9 years) were randomized; 43 and 38 patients received 2.5 and 3.5 mg/kg of r-ATG, respectively. Median follow-up duration was 445 days (range; 183-2165 days) from first ATG infusion. After 6 months, 50 patients (58%) responded to the therapy, including 4 (5%) who achieved a complete response and 45 (56%) a partial response. The response rates did not differ significantly between the two dosages in ATG groups at 6 months (2.5 mg/kg, 63% vs. 3.5 mg/kg, 58%, P = 0.820). The median absolute number of NK cells before IST was 92/µL (0-1,085/µL). To judge patients' responses to IST, we defined 138/µL as the absolute number of NK cells count before IST as the cut-off value using ROC curves. The response rate of patients with higher NK cells (≥ 138 /mL) to IST at 6 months was significantly higher than those with lower NK cells (Figure 1, < 138 /mL, 78% vs. 52%, P = 0.031). Multivariate logistic regression analysis identified the absolute number of NK cells before IST and reticulocyte at diagnosis (odds ratio [OR] = 0.16; 95% confidence interval [CI], 0.04-0.62; P = 0.008 and OR = 0.20; 95% CI, 0.06-0.67; P = 0.009, respectively) and the r-ATG plasma concentration on day 28 (OR = 0.11; 95% CI, 0.03-0.39; P = 0.001) as independent predictors of response to IST. The median absolute number of NK cells on days 90, 120, and 180 after IST was higher in the responders (113/mL, 118/mL, and 159/mL, respectively) than in the non-responders (57/mL, 53/mL, and 64/mL, P = 0.001, P Conclusions: The current study indicates that NK cells play a role in the pathogenesis of AA and may be the predictors of response to IST. Recovery of NK cell count correlated with hematopoietic recovery following IST, indicating that they may be used as markers to assess disease activity, treatment response and relapse. Disclosures Yamazaki: Novartis Pharma K.K.: Honoraria; Sanofi K.K.: Honoraria; Nippon Shinyaku Co., Ltd.: Honoraria. Nakao:Ono Pharmaceutical: Honoraria; Kyowa Kirin: Honoraria; Alaxion Pharmaceuticals: Honoraria; Ohtsuka Pharmaceutical: Honoraria; Celgene: Honoraria; Daiichi-Sankyo Company, Limited: Honoraria; Janssen Pharmaceutical K.K.: Honoraria; SynBio Pharmaceuticals: Consultancy; Novartis Pharma K.K: Honoraria; Bristol-Myers Squibb: Honoraria; Takeda Pharmaceutical Company Limited: Honoraria; Chugai Pharmaceutical Co.,Ltd: Honoraria.
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- 2019
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46. Quantifying Virus Escape from T Cells in the Latent HIV Reservoir
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Joanna A Warren, Shuntai Zhou, Yinyan Xu, Matthew Moeser, Jenn Kirchherr, Julia Sung, Nadia Roan, Adaora Adimora, JoAnn Kuruc, Cindy Gay, David Margolis, Nancie Archin, Ronald Swanstrom, and Nilu Goonetilleke
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Immunology ,Immunology and Allergy - Abstract
There is no cure for HIV, largely because HIV establishes a small but sustained pool of latently infected cells that are not cleared by antiretroviral therapy (ART). Current strategies include firstly reactivating the latent HIV reservoir and then using T cell immunotherapy to clear reactivated cells. However, pre-ART CD8 T cell escape variants have been reported in the HIV reservoir, which may limit CD8 T cell recognition and clearance of HIV-infected cells. The extent of virus escape from T cells in the latent reservoir is unclear. HIV-specific T cell responses were comprehensively mapped across the Clade B HIV proteome by IFN-g ELISpot in 25 ART-suppressed participants. In parallel, replication competent viruses derived from supernatants of autologous resting CD4 T cells following mitogenic reactivation were sequenced. Peptides spanning virus variants within reactive T cell epitopes were synthesized and examined by ELISpot for evidence of escape, defined as ≥50% difference in T cell magnitude between peptide variants. No correlations were observed between the size of the latent HIV reservoir and either HIV-specific T cell breadth (1–19 epitopes) or magnitude (156–2855 SFU/M PBMCs). T cell escape was assessed in 17 participants. 39% of reactive T cell epitopes (48/124) harbored ≥1 amino acid variants in the sequenced latent reservoir. Of those 48, 20 afforded T cell escape, providing an overall escape frequency in the reservoir of 16% (20/124). These data show that the majority of replication competent latent HIV viruses do not harbor CD8 T cell escape mutants, suggesting that immunotherapy approaches that boost CD8 T cell responses can successfully target the latent reservoir in HIV curative and or remission strategies.
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- 2019
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47. Exome sequencing identifies secondary mutations of SETBP1 and JAK3 in juvenile myelomonocytic leukemia
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Hideki Makishima, Kenichi Yoshida, Seiji Kojima, Xinan Wang, Hiroko Tanaka, Koji Nakanishi, Satoru Miyano, Sayoko Doisaki, Kenichi Chiba, Hideki Muramatsu, Ayana Kon, Seishi Ogawa, Nao Yoshida, Mariko Takahashi, Yoshiyuki Takahashi, Asahito Hama, Yuichi Shiraishi, Jaroslaw P. Maciejewski, Masashi Sanada, Hirotoshi Sakaguchi, Yusuke Okuno, and Yinyan Xu
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Male ,Neuroblastoma RAS viral oncogene homolog ,Biology ,Gene mutation ,medicine.disease_cause ,Article ,Proto-Oncogene Proteins p21(ras) ,Germline mutation ,hemic and lymphatic diseases ,Genetics ,medicine ,Humans ,Exome ,Child ,Germ-Line Mutation ,Exome sequencing ,Mutation ,Juvenile myelomonocytic leukemia ,Infant, Newborn ,High-Throughput Nucleotide Sequencing ,Infant ,Janus Kinase 3 ,Nuclear Proteins ,medicine.disease ,PTPN11 ,Leukemia, Myelomonocytic, Juvenile ,Child, Preschool ,Disease Progression ,Cancer research ,Female ,Carrier Proteins ,Signal Transduction - Abstract
Juvenile myelomonocytic leukemia (JMML) is an intractable pediatric leukemia with poor prognosis whose molecular pathogenesis is poorly understood, except for somatic or germline mutations of RAS pathway genes, including PTPN11, NF1, NRAS, KRAS and CBL, in the majority of cases. To obtain a complete registry of gene mutations in JMML, whole-exome sequencing was performed for paired tumor-normal DNA from 13 individuals with JMML (cases), which was followed by deep sequencing of 8 target genes in 92 tumor samples. JMML was characterized by a paucity of gene mutations (0.85 non-silent mutations per sample) with somatic or germline RAS pathway involvement in 82 cases (89%). The SETBP1 and JAK3 genes were among common targets for secondary mutations. Mutations in the latter were often subclonal and may be involved in the progression rather than the initiation of leukemia, and these mutations associated with poor clinical outcome. Our findings provide new insights into the pathogenesis and progression of JMML.
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- 2013
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48. Clinical utility of next-generation sequencing for inherited bone marrow failure syndromes
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Xinan Wang, Kenichi Chiba, Hiroki Yamaguchi, Sayoko Doisaki, Masao Kobayashi, Eiichi Ishii, Etsuro Ito, Yinyan Xu, Hideki Muramatsu, Seiji Kojima, Masashi Sanada, Yuichi Shiraishi, Seishi Ogawa, Satoru Miyano, Shinji Kunishima, Minoru Takata, Kenichi Koike, Hiroko Tanaka, Shouichi Ohga, Atsushi Narita, Yoshiyuki Takahashi, Kenichiro Watanabe, Hitoshi Kanno, Miharu Yabe, Kenichi Yoshida, Asahito Hama, Nozomu Kawashima, Hideo Harigae, Hirotoshi Sakaguchi, Yusuke Okuno, and Atsushi Manabe
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0301 basic medicine ,Male ,Hemoglobinuria, Paroxysmal ,Bioinformatics ,DNA sequencing ,03 medical and health sciences ,Fanconi anemia ,Exome Sequencing ,medicine ,Humans ,Exome ,Genetic Testing ,Medical diagnosis ,Bone Marrow Diseases ,Genetics (clinical) ,Exome sequencing ,Massive parallel sequencing ,Heterogeneous group ,business.industry ,Anemia, Aplastic ,High-Throughput Nucleotide Sequencing ,Sequence Analysis, DNA ,Bone Marrow Failure Disorders ,medicine.disease ,030104 developmental biology ,Bone Marrow failure syndromes ,Mutation ,Female ,Genetic diagnosis ,business - Abstract
Precise genetic diagnosis of inherited bone marrow failure syndromes (IBMFS), a heterogeneous group of genetic disorders, is challenging but essential for precise clinical decision making. We analyzed 121 IBMFS patients using a targeted sequencing covering 184 associated genes and 250 IBMFS patients using whole-exome sequencing (WES). We achieved successful genetic diagnoses for 53 of 121 patients (44%) using targeted sequencing and for 68 of 250 patients (27%) using WES. In the majority of cases (targeted sequencing: 45/53, 85%; WES: 63/68, 93%), the detected variants were concordant with, and therefore supported, the clinical diagnoses. However, in the remaining 13 cases (8 patients by target sequencing and 5 patients by WES), the clinical diagnoses were incompatible with the detected variants. Our approach utilizing targeted sequencing and WES achieved satisfactory diagnostic rates and supported the efficacy of massive parallel sequencing as a diagnostic tool for IBMFS. Genet Med advance online publication 19 January 2017
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- 2016
49. Let-7i-Induced Atg4B Suppression Is Essential for Autophagy of Placental Trophoblast in Preeclampsia
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Yinyan, Xu, Xinyan, Huang, Juan, Xie, Yanni, Chen, Jing, Fu, and Li, Wang
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Adult ,Autophagy-Related Proteins ,Down-Regulation ,Gene Expression Regulation, Developmental ,Transfection ,Trophoblasts ,Cysteine Endopeptidases ,MicroRNAs ,Pre-Eclampsia ,Pregnancy ,Case-Control Studies ,Cell Line, Tumor ,Autophagy ,Humans ,Female ,RNA Interference ,Microtubule-Associated Proteins ,Signal Transduction - Abstract
Autophagy, identified as type II programmed cell death, has already been known to be involved in the pathophysiology of preeclampsia (PE), which is a gestational disease with high morbidity. The present study aims to investigate the functional role of let-7i, a miRNA, in trophoblastic autophagy. Placental tissue used in this study was collected from patients with severe preeclampsia (SPE) or normal pregnant women. A decreased level of let-7i was found in placenta of SPE. In addition, autophagic vacuoles were observed in SPE and the expression of microtubule associated protein 1 light chain 3 (LC3) II/I was elevated. In vitro, let-7i mimics suppressed the autophagic activities in human HTR-8/SVneo trophoblast cell line (HTR-8) and human placental choriocarcinoma cell line JEG-3, whereas let-7i inhibitor enhanced the activities. As a potential target of let-7i, autophagy-related 4B cysteine peptidase (Atg4B) had an increased expression level in SPE. As expected, the increased expression of Atg4B was negatively regulated by let-7i using dual luciferase reporter assay. Furthermore, these trophoblast-like cells transfected with the let-7i mimic or inhibitors resulted in a significant change of Atg4B in both mRNA and protein level. More importantly, Atg4B overexpression could partly reverse let-7i mimic-reduced LC3II/I levels; whereas Atg4B silencing partly attenuated let-7i inhibitor-induced the level of LC3II/I expression. Taken together, these findings suggest that let-7i is able to regulate autophagic activity via regulating Atg4B expression, which might contribute to the pathogenesis of PE. J. Cell. Physiol. 232: 2581-2589, 2017. © 2016 Wiley Periodicals, Inc.
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- 2016
50. Clinical utility of next-generation sequencing-based minimal residual disease in paediatric B-cell acute lymphoblastic leukaemia
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Xinan Wang, Yuko Sekiya, Atsushi Narita, Nao Yoshida, Yoshiyuki Takahashi, Koji Kato, Hideki Muramatsu, Seiji Kojima, Yinyan Xu, Asahito Hama, Nozomu Kawashima, Kyogo Suzuki, Hirotoshi Sakaguchi, and Yusuke Okuno
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Male ,medicine.medical_specialty ,Pediatrics ,Neoplasm, Residual ,Time Factors ,Adolescent ,Gastroenterology ,Disease-Free Survival ,03 medical and health sciences ,0302 clinical medicine ,Maintenance therapy ,hemic and lymphatic diseases ,Internal medicine ,Medicine ,Humans ,Child ,Retrospective Studies ,Univariate analysis ,B-Lymphocytes ,business.industry ,Proportional hazards model ,Infant ,Bone Marrow Examination ,Hematology ,DNA, Neoplasm ,Sequence Analysis, DNA ,Precursor Cell Lymphoblastic Leukemia-Lymphoma ,Minimal residual disease ,Confidence interval ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Relative risk ,Child, Preschool ,Cohort ,Female ,Bone marrow ,business ,030215 immunology - Abstract
Summary We assessed the clinical utility of next-generation sequencing (NGS)-based monitoring of minimal residual disease (MRD) in a uniformly treated cohort of 79 patients with paediatric B-cell acute lymphoblastic leukaemia. Bone marrow samples were collected at the time of diagnosis, days 33 and 80, pre- (4–5 months) and post- (24 months) maintenance therapy time points, and at relapse. We identified leukaemia-specific CDR3 sequences in 72 of 79 patients (91%) and detected MRD in 59 of 232 samples. Although MRD was detected in 28 of 55 samples (51%) on day 33, the frequencies of MRD detection decreased to 25% (16/65) at day 80, 19% (11/58) at 4–5 months and 7·4% (4/54) at 24 months. In a univariate analysis, positive MRD results on day 80 [relative risk (RR) 95% confidence interval (CI) = 7·438 (2·561–21·6), P
- Published
- 2016
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