30 results on '"Magnuson SR"'
Search Results
2. GNE-371, a Potent and Selective Chemical Probe for the Second Bromodomains of Human Transcription-Initiation-Factor TFIID Subunit 1 and Transcription-Initiation-Factor TFIID Subunit 1-like.
- Author
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Wang S, Tsui V, Crawford TD, Audia JE, Burdick DJ, Beresini MH, Côté A, Cummings R, Duplessis M, Flynn EM, Hewitt MC, Huang HR, Jayaram H, Jiang Y, Joshi S, Murray J, Nasveschuk CG, Pardo E, Poy F, Romero FA, Tang Y, Taylor AM, Wang J, Xu Z, Zawadzke LE, Zhu X, Albrecht BK, Magnuson SR, Bellon S, and Cochran AG
- Subjects
- Humans, Models, Molecular, Protein Conformation, Protein Domains, Benzimidazoles metabolism, Drug Design, Molecular Probes metabolism, Transcription Factor TFIID chemistry, Transcription Factor TFIID metabolism
- Abstract
The biological functions of the dual bromodomains of human transcription-initiation-factor TFIID subunit 1 (TAF1(1,2)) remain unknown, although TAF1 has been identified as a potential target for oncology research. Here, we describe the discovery of a potent and selective in vitro tool compound for TAF1(2), starting from a previously reported lead. A cocrystal structure of lead compound 2 bound to TAF1(2) enabled structure-based design and structure-activity-relationship studies that ultimately led to our in vitro tool compound, 27 (GNE-371). Compound 27 binds TAF1(2) with an IC
50 of 10 nM while maintaining excellent selectivity over other bromodomain-family members. Compound 27 is also active in a cellular-TAF1(2) target-engagement assay (IC50 = 38 nM) and exhibits antiproliferative synergy with the BET inhibitor JQ1, suggesting engagement of endogenous TAF1 by 27 and further supporting the use of 27 in mechanistic and target-validation studies.- Published
- 2018
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- View/download PDF
3. Inhibition of bromodomain-containing protein 9 for the prevention of epigenetically-defined drug resistance.
- Author
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Crawford TD, Vartanian S, Côté A, Bellon S, Duplessis M, Flynn EM, Hewitt M, Huang HR, Kiefer JR, Murray J, Nasveschuk CG, Pardo E, Romero FA, Sandy P, Tang Y, Taylor AM, Tsui V, Wang J, Wang S, Zawadzke L, Albrecht BK, Magnuson SR, Cochran AG, and Stokoe D
- Subjects
- Aldehyde Dehydrogenase genetics, Aldehyde Dehydrogenase 1 Family, Cell Line, Tumor, Drug Design, Drug Resistance, Neoplasm drug effects, Humans, Molecular Docking Simulation, Pyridones chemistry, Pyridones pharmacology, Retinal Dehydrogenase, Transcription Factors metabolism, Drug Resistance drug effects, Epigenesis, Genetic drug effects, Small Molecule Libraries chemistry, Small Molecule Libraries pharmacology, Transcription Factors antagonists & inhibitors
- Abstract
Bromodomain-containing protein 9 (BRD9), an epigenetic "reader" of acetylated lysines on post-translationally modified histone proteins, is upregulated in multiple cancer cell lines. To assess the functional role of BRD9 in cancer cell lines, we identified a small-molecule inhibitor of the BRD9 bromodomain. Starting from a pyrrolopyridone lead, we used structure-based drug design to identify a potent and highly selective in vitro tool compound 11, (GNE-375). While this compound showed minimal effects in cell viability or gene expression assays, it showed remarkable potency in preventing the emergence of a drug tolerant population in EGFR mutant PC9 cells treated with EGFR inhibitors. Such tolerance has been linked to an altered epigenetic state, and 11 decreased BRD9 binding to chromatin, and this was associated with decreased expression of ALDH1A1, a gene previously shown to be important in drug tolerance. BRD9 inhibitors may therefore show utility in preventing epigenetically-defined drug resistance., (Copyright © 2017 Elsevier Ltd. All rights reserved.)
- Published
- 2017
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4. GNE-886: A Potent and Selective Inhibitor of the Cat Eye Syndrome Chromosome Region Candidate 2 Bromodomain (CECR2).
- Author
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Crawford TD, Audia JE, Bellon S, Burdick DJ, Bommi-Reddy A, Côté A, Cummings RT, Duplessis M, Flynn EM, Hewitt M, Huang HR, Jayaram H, Jiang Y, Joshi S, Kiefer JR, Murray J, Nasveschuk CG, Neiss A, Pardo E, Romero FA, Sandy P, Sims RJ 3rd, Tang Y, Taylor AM, Tsui V, Wang J, Wang S, Wang Y, Xu Z, Zawadzke L, Zhu X, Albrecht BK, Magnuson SR, and Cochran AG
- Abstract
The biological function of bromodomains, epigenetic readers of acetylated lysine residues, remains largely unknown. Herein we report our efforts to discover a potent and selective inhibitor of the bromodomain of cat eye syndrome chromosome region candidate 2 (CECR2). Screening of our internal medicinal chemistry collection led to the identification of a pyrrolopyridone chemical lead, and subsequent structure-based drug design led to a potent and selective CECR2 bromodomain inhibitor (GNE-886) suitable for use as an in vitro tool compound.
- Published
- 2017
- Full Text
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5. Regulatory T Cell Modulation by CBP/EP300 Bromodomain Inhibition.
- Author
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Ghosh S, Taylor A, Chin M, Huang HR, Conery AR, Mertz JA, Salmeron A, Dakle PJ, Mele D, Cote A, Jayaram H, Setser JW, Poy F, Hatzivassiliou G, DeAlmeida-Nagata D, Sandy P, Hatton C, Romero FA, Chiang E, Reimer T, Crawford T, Pardo E, Watson VG, Tsui V, Cochran AG, Zawadzke L, Harmange JC, Audia JE, Bryant BM, Cummings RT, Magnuson SR, Grogan JL, Bellon SF, Albrecht BK, Sims RJ 3rd, and Lora JM
- Subjects
- Acetylation drug effects, CREB-Binding Protein chemistry, CREB-Binding Protein metabolism, Cell Differentiation drug effects, Cell Line, Cells, Cultured, E1A-Associated p300 Protein chemistry, E1A-Associated p300 Protein metabolism, Forkhead Transcription Factors metabolism, Histones metabolism, Humans, Molecular Docking Simulation, Protein Structure, Tertiary drug effects, T-Lymphocytes, Regulatory cytology, T-Lymphocytes, Regulatory metabolism, Transcriptome drug effects, CREB-Binding Protein antagonists & inhibitors, E1A-Associated p300 Protein antagonists & inhibitors, Small Molecule Libraries chemistry, Small Molecule Libraries pharmacology, T-Lymphocytes, Regulatory drug effects
- Abstract
Covalent modification of histones is a fundamental mechanism of regulated gene expression in eukaryotes, and interpretation of histone modifications is an essential feature of epigenetic control. Bromodomains are specialized binding modules that interact with acetylated histones, linking chromatin recognition to gene transcription. Because of their ability to function in a domain-specific fashion, selective disruption of bromodomain:acetylated histone interactions with chemical probes serves as a powerful means for understanding biological processes regulated by these chromatin adaptors. Here we describe the discovery and characterization of potent and selective small molecule inhibitors for the bromodomains of CREBBP/EP300 that engage their target in cellular assays. We use these tools to demonstrate a critical role for CREBBP/EP300 bromodomains in regulatory T cell biology. Because regulatory T cell recruitment to tumors is a major mechanism of immune evasion by cancer cells, our data highlight the importance of CREBBP/EP300 bromodomain inhibition as a novel, small molecule-based approach for cancer immunotherapy., (© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.)
- Published
- 2016
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6. Diving into the Water: Inducible Binding Conformations for BRD4, TAF1(2), BRD9, and CECR2 Bromodomains.
- Author
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Crawford TD, Tsui V, Flynn EM, Wang S, Taylor AM, Côté A, Audia JE, Beresini MH, Burdick DJ, Cummings R, Dakin LA, Duplessis M, Good AC, Hewitt MC, Huang HR, Jayaram H, Kiefer JR, Jiang Y, Murray J, Nasveschuk CG, Pardo E, Poy F, Romero FA, Tang Y, Wang J, Xu Z, Zawadzke LE, Zhu X, Albrecht BK, Magnuson SR, Bellon S, and Cochran AG
- Subjects
- Binding Sites drug effects, Cell Cycle Proteins, Dose-Response Relationship, Drug, Fluorescence Resonance Energy Transfer, Fluorometry, Histone Acetyltransferases metabolism, Humans, Ligands, Models, Molecular, Molecular Conformation, Nuclear Proteins metabolism, Pyridones chemical synthesis, Pyridones chemistry, Pyrroles chemical synthesis, Pyrroles chemistry, Structure-Activity Relationship, TATA-Binding Protein Associated Factors metabolism, Transcription Factor TFIID metabolism, Transcription Factors metabolism, Histone Acetyltransferases antagonists & inhibitors, Nuclear Proteins antagonists & inhibitors, Pyridones pharmacology, Pyrroles pharmacology, TATA-Binding Protein Associated Factors antagonists & inhibitors, Transcription Factor TFIID antagonists & inhibitors, Transcription Factors antagonists & inhibitors, Water chemistry
- Abstract
The biological role played by non-BET bromodomains remains poorly understood, and it is therefore imperative to identify potent and highly selective inhibitors to effectively explore the biology of individual bromodomain proteins. A ligand-efficient nonselective bromodomain inhibitor was identified from a 6-methyl pyrrolopyridone fragment. Small hydrophobic substituents replacing the N-methyl group were designed directing toward the conserved bromodomain water pocket, and two distinct binding conformations were then observed. The substituents either directly displaced and rearranged the conserved solvent network, as in BRD4(1) and TAF1(2), or induced a narrow hydrophobic channel adjacent to the lipophilic shelf, as in BRD9 and CECR2. The preference of distinct substituents for individual bromodomains provided selectivity handles useful for future lead optimization efforts for selective BRD9, CECR2, and TAF1(2) inhibitors.
- Published
- 2016
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7. Fragment-based identification and optimization of a class of potent pyrrolo[2,1-f][1,2,4]triazine MAP4K4 inhibitors.
- Author
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Wang L, Stanley M, Boggs JW, Crawford TD, Bravo BJ, Giannetti AM, Harris SF, Magnuson SR, Nonomiya J, Schmidt S, Wu P, Ye W, Gould SE, Murray LJ, Ndubaku CO, and Chen H
- Subjects
- Animals, Crystallography, X-Ray, Dose-Response Relationship, Drug, Humans, Intracellular Signaling Peptides and Proteins metabolism, Ligands, Mice, Models, Molecular, Molecular Structure, Protein Kinase Inhibitors chemical synthesis, Protein Kinase Inhibitors chemistry, Protein Serine-Threonine Kinases metabolism, Structure-Activity Relationship, Triazines chemical synthesis, Triazines chemistry, NF-kappaB-Inducing Kinase, Intracellular Signaling Peptides and Proteins antagonists & inhibitors, Protein Kinase Inhibitors pharmacology, Protein Serine-Threonine Kinases antagonists & inhibitors, Triazines pharmacology
- Abstract
MAP4K4 has been shown to regulate key cellular processes that are tied to disease pathogenesis. In an effort to generate small molecule MAP4K4 inhibitors, a fragment-based screen was carried out and a pyrrolotriazine fragment with excellent ligand efficiency was identified. Further modification of this fragment guided by X-ray crystal structures and molecular modeling led to the discovery of a series of promising compounds with good structural diversity and physicochemical properties. These compounds exhibited single digit nanomolar potency and compounds 35 and 44 achieved good in vivo exposure., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2014
- Full Text
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8. Differential expression of stress and immune response pathway transcripts and miRNAs in normal human endothelial cells subjected to fractionated or single-dose radiation.
- Author
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Palayoor ST, John-Aryankalayil M, Makinde AY, Falduto MT, Magnuson SR, and Coleman CN
- Subjects
- Apoptosis, Dose Fractionation, Radiation, Dose-Response Relationship, Radiation, Gene Expression Profiling, Humans, MicroRNAs genetics, MicroRNAs metabolism, Microarray Analysis, Stress, Physiological immunology, Endothelial Cells metabolism, Endothelial Cells radiation effects, MicroRNAs biosynthesis
- Abstract
Unlabelled: Although modern radiotherapy technologies can precisely deliver higher doses of radiation to tumors, thus, reducing overall radiation exposure to normal tissues, moderate dose, and normal tissue toxicity still remains a significant limitation. The present study profiled the global effects on transcript and miR expression in human coronary artery endothelial cells using single-dose irradiation (SD, 10 Gy) or multifractionated irradiation (MF, 2 Gy × 5) regimens. Longitudinal time points were collected after an SD or final dose of MF irradiation for analysis using Agilent Human Gene Expression and miRNA microarray platforms. Compared with SD, the exposure to MF resulted in robust transcript and miR expression changes in terms of the number and magnitude. For data analysis, statistically significant mRNAs (2-fold) and miRs (1.5-fold) were processed by Ingenuity Pathway Analysis to uncover miRs associated with target transcripts from several cellular pathways after irradiation. Interestingly, MF radiation induced a cohort of mRNAs and miRs that coordinate the induction of immune response pathway under tight regulation. In addition, mRNAs and miRs associated with DNA replication, recombination and repair, apoptosis, cardiovascular events, and angiogenesis were revealed., Implications: Radiation-induced alterations in stress and immune response genes in endothelial cells contribute to changes in normal tissue and tumor microenvironment, and affect the outcome of radiotherapy., (©2014 American Association for Cancer Research.)
- Published
- 2014
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9. Discovery of selective 4-Amino-pyridopyrimidine inhibitors of MAP4K4 using fragment-based lead identification and optimization.
- Author
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Crawford TD, Ndubaku CO, Chen H, Boggs JW, Bravo BJ, Delatorre K, Giannetti AM, Gould SE, Harris SF, Magnuson SR, McNamara E, Murray LJ, Nonomiya J, Sambrone A, Schmidt S, Smyczek T, Stanley M, Vitorino P, Wang L, West K, Wu P, and Ye W
- Subjects
- Animals, Drug Discovery, Female, Intracellular Signaling Peptides and Proteins chemistry, Mice, Models, Molecular, Protein Kinase Inhibitors pharmacology, Protein Serine-Threonine Kinases chemistry, Pyrimidines pharmacology, Structure-Activity Relationship, Intracellular Signaling Peptides and Proteins antagonists & inhibitors, Protein Kinase Inhibitors chemical synthesis, Protein Serine-Threonine Kinases antagonists & inhibitors, Pyrimidines chemical synthesis
- Abstract
Mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) is a serine/threonine kinase implicated in the regulation of many biological processes. A fragment-based lead discovery approach was used to generate potent and selective MAP4K4 inhibitors. The fragment hit pursued in this article had excellent ligand efficiency (LE), an important attribute for subsequent successful optimization into drug-like lead compounds. The optimization efforts eventually led us to focus on the pyridopyrimidine series, from which 6-(2-fluoropyridin-4-yl)pyrido[3,2-d]pyrimidin-4-amine (29) was identified. This compound had low nanomolar potency, excellent kinase selectivity, and good in vivo exposure, and demonstrated in vivo pharmacodynamic effects in a human tumor xenograft model.
- Published
- 2014
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10. mRNA Expression Profiles for Prostate Cancer following Fractionated Irradiation Are Influenced by p53 Status.
- Author
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Simone CB 2nd, John-Aryankalayil M, Palayoor ST, Makinde AY, Cerna D, Falduto MT, Magnuson SR, and Coleman CN
- Abstract
We assessed changes in cell lines of varying p53 status after various fractionation regimens to determine if p53 influences gene expression and if multifractionated (MF) irradiation can induce molecular pathway changes. LNCaP (p53 wild-type), PC3 (p53 null), and DU145 (p53 mutant) prostate carcinoma cells received 5 and 10 Gy as single-dose (SD) or MF (0.5 Gy x 10, 1 Gy x 10, and 2 Gy x 5) irradiation to simulate hypofractionated and conventionally fractionated prostate radiotherapies, respectively. mRNA analysis revealed 978 LNCaP genes differentially expressed (greater than two-fold change, P < .05) after irradiation. Most were altered with SD (69%) and downregulated (75%). Fewer PC3 (343) and DU145 (116) genes were induced, with most upregulated (87%, 89%) and altered with MF irradiation. Gene ontology revealed immune response and interferon genes most prominently expressed after irradiation in PC3 and DU145. Cell cycle regulatory (P = 9.23 x 10(-73), 14.2% of altered genes, nearly universally downregulated) and DNA replication/repair (P = 6.86 x 10(-30)) genes were most prominent in LNCaP. Stress response and proliferation genes were altered in all cell lines. p53-activated genes were only induced in LNCaP. Differences in gene expression exist between cell lines and after varying irradiation regimens that are p53 dependent. As the duration of changes is ≥24 hours, it may be possible to use radiation-inducible targeted therapy to enhance the efficacy of molecular targeted agents.
- Published
- 2013
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11. Discovery of potent and selective pyrazolopyrimidine janus kinase 2 inhibitors.
- Author
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Hanan EJ, van Abbema A, Barrett K, Blair WS, Blaney J, Chang C, Eigenbrot C, Flynn S, Gibbons P, Hurley CA, Kenny JR, Kulagowski J, Lee L, Magnuson SR, Morris C, Murray J, Pastor RM, Rawson T, Siu M, Ultsch M, Zhou A, Sampath D, and Lyssikatos JP
- Subjects
- Animals, Female, Humans, Janus Kinase 2 metabolism, Mice, Mice, SCID, Models, Molecular, Molecular Structure, Phosphorylation drug effects, Protein Kinase Inhibitors chemical synthesis, Protein Kinase Inhibitors pharmacokinetics, Pyrimidines chemistry, STAT5 Transcription Factor metabolism, Structure-Activity Relationship, Tissue Distribution, Janus Kinase 2 antagonists & inhibitors, Protein Kinase Inhibitors pharmacology, Pyrimidines pharmacology
- Abstract
The discovery of somatic Jak2 mutations in patients with chronic myeloproliferative neoplasms has led to significant interest in discovering selective Jak2 inhibitors for use in treating these disorders. A high-throughput screening effort identified the pyrazolo[1,5-a]pyrimidine scaffold as a potent inhibitor of Jak2. Optimization of lead compounds 7a-b and 8 in this chemical series for activity against Jak2, selectivity against other Jak family kinases, and good in vivo pharmacokinetic properties led to the discovery of 7j. In a SET2 xenograft model that is dependent on Jak2 for growth, 7j demonstrated a time-dependent knock-down of pSTAT5, a downstream target of Jak2.
- Published
- 2012
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12. Fractionated radiation alters oncomir and tumor suppressor miRNAs in human prostate cancer cells.
- Author
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John-Aryankalayil M, Palayoor ST, Makinde AY, Cerna D, Simone CB 2nd, Falduto MT, Magnuson SR, and Coleman CN
- Subjects
- Cell Line, Tumor, Epithelial Cells metabolism, Epithelial Cells radiation effects, Hot Temperature, Humans, Immunity, Innate genetics, Immunity, Innate radiation effects, Male, Radiation Tolerance genetics, Radiation Tolerance radiation effects, Reproducibility of Results, Transcriptome radiation effects, Dose Fractionation, Radiation, MicroRNAs genetics, MicroRNAs metabolism, Prostatic Neoplasms pathology
- Abstract
We have previously demonstrated that prostate carcinoma cells exposed to fractionated radiation differentially expressed more genes compared to single-dose radiation. To understand the role of miRNA in regulation of radiation-induced gene expression, we analyzed miRNA expression in LNCaP, PC3 and DU145 prostate cancer cells treated with single-dose radiation and fractionated radiation by microarray. Selected miRNAs were studied in RWPE-1 normal prostate epithelial cells by RT-PCR. Fractionated radiation significantly altered more miRNAs as compared to single-dose radiation. Downregulation of oncomiR-17-92 cluster was observed only in the p53 positive LNCaP and RWPE-1 cells treated with single-dose radiation and fractionated radiation. Comparison of miRNA and mRNA data by IPA target filter analysis revealed an inverse correlation between miR-17-92 cluster and several targets including TP53INP1 in p53 signaling pathway. The base level expressions of these miRNAs were significantly different among the cell lines and did not predict the radiation outcome. Tumor suppressor miR-34a and let-7 miRNAs were upregulated by fractionated radiation in radiosensitive LNCaP (p53 positive) and PC3 (p53-null) cells indicating that radiation-induced miRNA expression may not be regulated by p53 alone. Our data support the potential for using fractionated radiation to induce molecular targets and radiation-induced miRNAs may have a significant role in predicting radiosensitivity.
- Published
- 2012
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13. Gene expression profile of coronary artery cells treated with nonsteroidal anti-inflammatory drugs reveals off-target effects.
- Author
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Palayoor ST, J-Aryankalayil M, Makinde AY, Cerna D, Falduto MT, Magnuson SR, and Coleman CN
- Subjects
- Anti-Inflammatory Agents, Non-Steroidal administration & dosage, Blotting, Western, Celecoxib, Cell Proliferation drug effects, Cells, Cultured, Coronary Vessels cytology, Coronary Vessels metabolism, Dose-Response Relationship, Drug, Endothelial Cells drug effects, Endothelial Cells metabolism, Gene Expression Profiling, Humans, Ibuprofen pharmacology, Microarray Analysis, Molecular Targeted Therapy, Muscle, Smooth, Vascular cytology, Muscle, Smooth, Vascular drug effects, Muscle, Smooth, Vascular metabolism, Nitrobenzenes administration & dosage, Nitrobenzenes pharmacology, Pyrazoles administration & dosage, Pyrazoles pharmacology, Reverse Transcriptase Polymerase Chain Reaction, Sulfonamides administration & dosage, Sulfonamides pharmacology, Anti-Inflammatory Agents, Non-Steroidal pharmacology, Coronary Vessels drug effects, Gene Expression Regulation drug effects
- Abstract
Nonsteroidal anti-inflammatory drugs (NSAIDs) have come under scrutiny because of the gastrointestinal, renal, and cardiovascular toxicity associated with prolonged use of these drugs. The purpose of this study was to identify molecular targets for NSAIDs related to cellular toxicity with a view to optimize drug efficacy in the clinic. Coronary artery smooth muscle cells and endothelial cells were treated with low (clinically achievable) and high (typically used in preclinical studies) concentrations of celecoxib, NS398, and ibuprofen for 24 hours. NSAIDs-induced gene expression changes were evaluated by microarray analysis and validated by real-time reverse-transcription polymerase chain reaction and western blotting. The functional significance of differentially expressed genes was evaluated by Ingenuity Pathway Analysis. At high concentrations, NSAIDs altered the expression of genes regulating cell proliferation and cell death. NSAIDs also altered genes associated with cardiovascular functions including inflammation, thrombosis, fibrinolysis, coronary artery disease, and hypertension. The gene expression was most impacted by ibuprofen, celecoxib, and NS398, in that order. This study revealed that NSAIDs altered expression of an array of genes associated with cardiovascular events and emphasizes the potential for fingerprinting drugs in preclinical studies to assess the potential drug toxicity and to optimize the drug efficacy in clinical settings.
- Published
- 2012
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14. Transcript profiling of individual twin blastomeres derived by splitting two-cell stage murine embryos.
- Author
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Roberts RM, Katayama M, Magnuson SR, Falduto MT, and Torres KE
- Subjects
- Animals, Blastomeres chemistry, Cells, Cultured, Cleavage Stage, Ovum metabolism, Embryo, Mammalian, Female, Gene Expression Profiling, Gene Expression Regulation, Developmental, Male, Mice, Microarray Analysis, Pregnancy, RNA, Messenger analysis, RNA, Messenger isolation & purification, Twins, Blastomeres cytology, Blastomeres metabolism, Cleavage Stage, Ovum cytology, Twinning, Monozygotic genetics, Twinning, Monozygotic physiology
- Abstract
In invertebrates and amphibians, informational macromolecules in egg cytoplasm are organized to provide direction to the formation of embryonic lineages, but it is unclear whether vestiges of such prepatterning exist in mammals. Here we examined whether twin blastomeres from 2-cell stage mouse embryos differ in mRNA content. mRNA from 26 blastomeres derived from 13 embryos approximately mid-way through their second cell cycle was subjected to amplification. Twenty amplified samples were hybridized to arrays. Of those samples that hybridized successfully, 12 samples in six pairs were used in the final analysis. Probes displaying normalized values >0.25 (n = 4573) were examined for consistent bias in expression within blastomere pairs. Although transcript content varied between both individual embryos and twin blastomeres, no consistent asymmetries were observed for the majority of genes, with only 178 genes displaying a >1.4-fold difference in expression across all six pairs. Although class discovery clustering showed that blastomere pairs separated into two distinct groups in terms of their differentially expressed genes, when the data were tested for significance of asymmetrical expression, only 39 genes with >1.4-fold change ratios in six of six blastomere pairs passed the two-sample t-test (P < 0.05). Transcripts encoding proteins implicated in RNA processing and cytoskeletal organization were among the most abundant, differentially distributed mRNA, suggesting that a stochastically based lack of synchrony in cell cycle progression between the two cells might explain at least some and possibly all of the asymmetries in transcript composition.
- Published
- 2011
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15. Fractionated radiation therapy can induce a molecular profile for therapeutic targeting.
- Author
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John-Aryankalayil M, Palayoor ST, Cerna D, Simone CB 2nd, Falduto MT, Magnuson SR, and Coleman CN
- Subjects
- Apoptosis radiation effects, Cell Cycle radiation effects, Cell Line, Tumor, Cell Survival drug effects, Cell Survival radiation effects, Gene Expression Profiling, Histones metabolism, Humans, Male, Oligonucleotide Array Sequence Analysis, Phenotype, Phosphorylation radiation effects, Phosphorylcholine analogs & derivatives, Phosphorylcholine pharmacology, Phosphorylcholine therapeutic use, Prostatic Neoplasms drug therapy, Prostatic Neoplasms genetics, Radiotherapy Dosage, Reproducibility of Results, Time Factors, Dose Fractionation, Radiation, Prostatic Neoplasms pathology, Prostatic Neoplasms radiotherapy
- Abstract
To examine the possibility of using fractionated radiation in a unique way with molecular targeted therapy, gene expression profiles of prostate carcinoma cells treated with 10 Gy radiation administered either as a single dose or as fractions of 2 Gy × 5 and 1 Gy × 10 were examined by microarray analysis. Compared to the single dose, the fractionated irradiation resulted in significant increases in differentially expressed genes in both cell lines, with more robust changes in PC3 cells than in DU145 cells. The differentially expressed genes (>twofold change; P < 0.05) were clustered and their ontological annotations evaluated. In PC3 cells genes regulating immune and stress response, cell cycle and apoptosis were significantly up-regulated by multifractionated radiation compared to single-dose radiation. Ingenuity Pathway Analysis (IPA) of the differentially expressed genes revealed that immune response and cardiovascular genes were in the top functional category in PC3 cells and cell-to-cell signaling in DU145 cells. RT-PCR analysis showed that a flexure point for gene expression occurred at the 6th-8th fraction and AKT inhibitor perifosine produced enhanced cell killing after 1 Gy × 8 fractionated radiation in PC3 and DU145 cells compared to single dose. This study suggests that fractionated radiation may be a uniquely exploitable, non-oncogene-addiction stress pathway for molecular therapeutic targeting.
- Published
- 2010
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16. NS-398, ibuprofen, and cyclooxygenase-2 RNA interference produce significantly different gene expression profiles in prostate cancer cells.
- Author
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John-Aryankalayil M, Palayoor ST, Cerna D, Falduto MT, Magnuson SR, and Coleman CN
- Subjects
- Angiopoietin-Like Protein 4, Angiopoietins genetics, Angiopoietins metabolism, Anti-Inflammatory Agents, Non-Steroidal pharmacology, Cell Line, Tumor, Cell Survival drug effects, Cyclooxygenase 2 metabolism, Gene Expression Profiling, Gene Knockdown Techniques, Hot Temperature, Humans, Male, Matrix Metalloproteinase 3 genetics, Matrix Metalloproteinase 3 metabolism, Oligonucleotide Array Sequence Analysis, Prostatic Neoplasms metabolism, Prostatic Neoplasms pathology, Cyclooxygenase 2 genetics, Cyclooxygenase 2 Inhibitors pharmacology, Gene Expression Regulation, Neoplastic drug effects, Ibuprofen pharmacology, Nitrobenzenes pharmacology, Prostatic Neoplasms genetics, RNA Interference, Sulfonamides pharmacology
- Abstract
Cyclooxygenase-2 (COX-2) plays a significant role in tumor development and progression. Nonsteroidal anti-inflammatory drugs (NSAID) exhibit potent anticancer effects in vitro and in vivo by COX-2-dependent and COX-2-independent mechanisms. In this study, we used microarray analysis to identify the change of expression profile regulated by a COX-2-specific NSAID NS-398 (0.01 and 0.1 mmol/L), a nonspecific NSAID ibuprofen (0.1 and 1.5 mmol/L) and RNA interference (RNAi)-mediated COX-2 inhibition in PC3 prostate cancer cells. A total of 3,362 differentially expressed genes with 2-fold change and P<0.05 were identified. Low concentrations of NSAIDs and COX-2 RNAi altered very few genes (1-3%) compared with the higher concentration of NS-398 (17%) and ibuprofen (80%). Ingenuity Pathway Analysis was used for distributing the differentially expressed genes into biological networks and for evaluation of functional significance. The top 3 networks for both NSAIDs included functional categories of DNA replication, recombination and repair, and gastrointestinal disease. Immunoresponse function was specific to NS-398, and cell cycle and cellular movement were among the top functions for ibuprofen. Ingenuity Pathway Analysis also identified renal and urologic disease as a function specific for ibuprofen. This comprehensive study identified several COX-2-independent targets of NSAIDs, which may help explain the antitumor and radiosensitizing effects of NSAIDs. However, none of these categories were reflected in the identified networks in PC3 cells treated with clinically relevant low concentrations of NS-398 and ibuprofen or with COX-2 RNAi, suggesting the benefit to fingerprinting preclinical drug concentrations to improve their relevance to the clinical setting.
- Published
- 2009
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17. The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements.
- Author
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Shi L, Reid LH, Jones WD, Shippy R, Warrington JA, Baker SC, Collins PJ, de Longueville F, Kawasaki ES, Lee KY, Luo Y, Sun YA, Willey JC, Setterquist RA, Fischer GM, Tong W, Dragan YP, Dix DJ, Frueh FW, Goodsaid FM, Herman D, Jensen RV, Johnson CD, Lobenhofer EK, Puri RK, Schrf U, Thierry-Mieg J, Wang C, Wilson M, Wolber PK, Zhang L, Amur S, Bao W, Barbacioru CC, Lucas AB, Bertholet V, Boysen C, Bromley B, Brown D, Brunner A, Canales R, Cao XM, Cebula TA, Chen JJ, Cheng J, Chu TM, Chudin E, Corson J, Corton JC, Croner LJ, Davies C, Davison TS, Delenstarr G, Deng X, Dorris D, Eklund AC, Fan XH, Fang H, Fulmer-Smentek S, Fuscoe JC, Gallagher K, Ge W, Guo L, Guo X, Hager J, Haje PK, Han J, Han T, Harbottle HC, Harris SC, Hatchwell E, Hauser CA, Hester S, Hong H, Hurban P, Jackson SA, Ji H, Knight CR, Kuo WP, LeClerc JE, Levy S, Li QZ, Liu C, Liu Y, Lombardi MJ, Ma Y, Magnuson SR, Maqsodi B, McDaniel T, Mei N, Myklebost O, Ning B, Novoradovskaya N, Orr MS, Osborn TW, Papallo A, Patterson TA, Perkins RG, Peters EH, Peterson R, Philips KL, Pine PS, Pusztai L, Qian F, Ren H, Rosen M, Rosenzweig BA, Samaha RR, Schena M, Schroth GP, Shchegrova S, Smith DD, Staedtler F, Su Z, Sun H, Szallasi Z, Tezak Z, Thierry-Mieg D, Thompson KL, Tikhonova I, Turpaz Y, Vallanat B, Van C, Walker SJ, Wang SJ, Wang Y, Wolfinger R, Wong A, Wu J, Xiao C, Xie Q, Xu J, Yang W, Zhang L, Zhong S, Zong Y, and Slikker W Jr
- Subjects
- Equipment Design, Equipment Failure Analysis, Gene Expression Profiling methods, Quality Control, Reproducibility of Results, Sensitivity and Specificity, United States, Gene Expression Profiling instrumentation, Oligonucleotide Array Sequence Analysis instrumentation, Quality Assurance, Health Care methods
- Abstract
Over the last decade, the introduction of microarray technology has had a profound impact on gene expression research. The publication of studies with dissimilar or altogether contradictory results, obtained using different microarray platforms to analyze identical RNA samples, has raised concerns about the reliability of this technology. The MicroArray Quality Control (MAQC) project was initiated to address these concerns, as well as other performance and data analysis issues. Expression data on four titration pools from two distinct reference RNA samples were generated at multiple test sites using a variety of microarray-based and alternative technology platforms. Here we describe the experimental design and probe mapping efforts behind the MAQC project. We show intraplatform consistency across test sites as well as a high level of interplatform concordance in terms of genes identified as differentially expressed. This study provides a resource that represents an important first step toward establishing a framework for the use of microarrays in clinical and regulatory settings.
- Published
- 2006
- Full Text
- View/download PDF
18. Combined histomorphometric and gene-expression profiling applied to toxicology.
- Author
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Kriete A, Anderson MK, Love B, Freund J, Caffrey JJ, Young MB, Sendera TJ, Magnuson SR, and Braughler JM
- Subjects
- Animals, Carbon Tetrachloride toxicity, Chemical and Drug Induced Liver Injury, Data Interpretation, Statistical, Histocytochemistry methods, Liver drug effects, Liver metabolism, Liver pathology, Liver Diseases genetics, Liver Diseases pathology, Oligonucleotide Array Sequence Analysis methods, RNA genetics, RNA metabolism, Rats, Rats, Sprague-Dawley, Gene Expression Profiling, Toxicology methods
- Abstract
We have developed a unique methodology for the combined analysis of histomorphometric and gene-expression profiles amenable to intensive data mining and multisample comparison for a comprehensive approach to toxicology. This hybrid technology, termed extensible morphometric relational gene-expression analysis (EMeRGE), is applied in a toxicological study of time-varied vehicle- and carbon-tetrachloride (CCl4)-treated rats, and demonstrates correlations between specific genes and tissue structures that can augment interpretation of biological observations and diagnosis.
- Published
- 2003
- Full Text
- View/download PDF
19. Analysis of gene expression in carbon tetrachloride-treated rat livers using a novel bioarray technology.
- Author
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Young MB, DiSilvestro MR, Sendera TJ, Freund J, Kriete A, and Magnuson SR
- Subjects
- Animals, Gene Expression Regulation drug effects, Gene Expression Regulation physiology, Male, Rats, Rats, Sprague-Dawley, Up-Regulation drug effects, Up-Regulation genetics, Up-Regulation physiology, Carbon Tetrachloride pharmacology, Gene Expression Regulation genetics, Liver drug effects, Liver metabolism, Oligonucleotide Array Sequence Analysis methods
- Abstract
The present study successfully utilizes a new ADME Rat Expression Bioarray, containing 1040 metabolism- and toxicology-linked genes, to monitor gene expression from the livers of rats treated with carbon tetrachloride (CCl(4)). Histopathological analysis, hierarchical clustering methods, and gene expression profiling are compared between the control and CCl(4)-treated animals. A total of 44 transcripts were found to be altered in response to the hepatotoxin, 19 of which were upregulated and 25 were downregulated. Some of these gene expression changes were expected and concurred with previously published data while others were novel findings.
- Published
- 2003
- Full Text
- View/download PDF
20. Prospects for kinase activity modulators in the treatment of diabetes and diabetic complications.
- Author
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Bullock WH, Magnuson SR, Choi S, Gunn DE, and Rudolph J
- Subjects
- Animals, Blood Glucose metabolism, Diabetes Complications, Enzyme Activation drug effects, Glycogen Synthase antagonists & inhibitors, Humans, Hypoglycemic Agents chemistry, Hypoglycemic Agents pharmacology, Insulin metabolism, Phosphorylation drug effects, Phosphotransferases antagonists & inhibitors, Protein Serine-Threonine Kinases antagonists & inhibitors, Protein Serine-Threonine Kinases metabolism, Receptor, Insulin classification, Signal Transduction drug effects, Diabetes Mellitus drug therapy, Diabetes Mellitus enzymology, Enzyme Inhibitors therapeutic use, Phosphotransferases metabolism, Receptor, Insulin drug effects, Receptor, Insulin metabolism
- Abstract
The worldwide population afflicted with diabetes is growing at an epidemic rate. There are almost five times the number of people suffering from this disease today as compared to 10 years ago and the worldwide diabetic population is expected to exceed 300 million by the year 2028. This trend appears to be driven by the world's adoption of a "western lifestyle" comprising a combination of unhealthy dietary habits and a sedentary daily routine. Today, diabetes is the sixth leading cause of death in the United States and the death rates associated with diabetes have increased by 30% over the last decade. While medications are available to reduce blood glucose, approximately one third of the patients on oral medications will eventually fail to respond and require insulin injections. Consequently, there is a tremendous medical need for improved medications to manage this disease that demonstrate superior efficacy. Emerging knowledge regarding the underlying mechanisms that impair glucose-stimulated insulin secretion and the action of insulin on its target tissues has grown tremendously over the last two decades. During that same period of time, an understanding of the important role that phosphorylation state plays in signal transduction has drawn attention to several kinases as attractive approaches for the treatment of diabetes. Recent advances include the discovery of a"small molecule" allosteric binding site on the insulin receptor, inhibitors of glycogen synthase kinase-3(GSK-3) which improve insulin sensitivity in diabetic animal models and inhibitors of protein kinase C- beta that are presently being evaluated in clinical trials for diabetic retinopathy. This review will detail these recent discoveries and highlight emerging biological targets that hold potential to normalize blood glucose and prevent the progression of diabetes related complications.
- Published
- 2002
- Full Text
- View/download PDF
21. Endothelin receptor in benign prostatic hyperplastic cells. Binding and functional studies.
- Author
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Wu-Wong JR, Chiou WJ, Saeed B, Magnuson SR, Dayton BD, Ng SC, and Opgenorth TJ
- Subjects
- Arachidonic Acid metabolism, Calcium metabolism, Endothelin-1 metabolism, Humans, Hydrolysis, Male, Middle Aged, Phosphatidylinositols metabolism, Polymerase Chain Reaction, Prostatic Hyperplasia pathology, Receptor, Endothelin A, Receptor, Endothelin B, Receptors, Endothelin physiology, Tumor Cells, Cultured, Prostatic Hyperplasia metabolism, Receptors, Endothelin metabolism
- Abstract
Endothelins (ETs) are 21-amino acid peptides that bind to membrane receptors to initiate pathophysiological effects. This report characterizes ET receptors in benign prostatic hyperplasia-1 (BPH-1) cells, a prostate cell line isolated from a specimen of a 60-yr-old man with benign prostatic hyperplasia. [(125)I]ET-1 or -3 binding was of high affinity, with B(max) and K(d) values of 48 fmol/1 x 10(6) cells and 0.16 nM for ET-1, and 2.9 fmol/1 x 10(6) cells and 0.033 nM for ET-3, respectively. ET-1, ET-3, FR139317, Ro 46-2005, and IRL1620 inhibited [(125)I]ET-1 binding to these cells with IC50 values of 0.22, 186, 0.20, 52.8, and 772.3 nM, respectively. Reverse transcription-polymerase chain reaction confirmed that BPH-1 cells expressed more ET(A) than ET(B) receptors. ET-1 did not have any effect on arachidonic acid release, but caused a modest stimulation of phosphatidylinositol hydrolysis, and induced a prominent, sustained elevation in intracellular Ca2+ concentrations. The functional effects of ET-1 were completely inhibited by the ET(A)-selective antagonists FR139317 and A-127722, suggesting that the effects were mediated by the ET(A) receptor. These results suggest that ET may play functional roles in benign prostatic hyperplasia.
- Published
- 1997
22. Dissociation characteristics of endothelin receptor agonists and antagonists in cloned human type-B endothelin receptor.
- Author
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Chiou WJ, Magnuson SR, Dixon D, Sundy S, Opgenorth TJ, and Wu-Wong JR
- Subjects
- Animals, CHO Cells, Cricetinae, Endothelin Receptor Antagonists, Humans, Kinetics, Molecular Weight, Protein Binding, Pyrimidines metabolism, Receptor, Endothelin B, Receptors, Endothelin agonists, Receptors, Endothelin genetics, Recombinant Fusion Proteins metabolism, Sulfonamides metabolism, Endothelins metabolism, Oligopeptides metabolism, Peptide Fragments metabolism, Receptors, Endothelin metabolism
- Abstract
The human type-B endothelin receptor (h-ETB) was cloned from human lung poly A+RNA and stably expressed in CHO cells. Endothelin (ET) receptor binding and stimulation of PI hydrolysis demonstrated that the cloned h-ETB receptor is functional and linked to intracellular signal transduction pathways in CHO cells. The molecular mass of the h-ETB receptor was determined to be 65 KDa, and Bmax and Kd were 0.36 pmol/mg and 80 pM, respectively. Competition studies employing receptor ligands revealed that the potencies of the test ligands (IRL1620, PD142893, and Ro46-2005) were dependent on the length of the incubation time, whereas the natural agonists (ET-1 and ET-3) were not. When competing with ET-1 in the h-ETB receptor binding, the IC50 increased from 1.2 nM to 8.2 nM for IRL1620, 0.068 microM to 1.9 microM for PD142893, and 0.76 microM to 12.7 microM for Ro46-2005, as the incubation time increased from 1 hr to 24 hr. These time-induced changes are likely due to differences in the dissociation characteristics between the artificial ligands and the natural ligands.
- Published
- 1997
- Full Text
- View/download PDF
23. Methylation of the 5' CpG island of the endothelin B receptor gene is common in human prostate cancer.
- Author
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Nelson JB, Lee WH, Nguyen SH, Jarrard DF, Brooks JD, Magnuson SR, Opgenorth TJ, Nelson WG, and Bova GS
- Subjects
- Dinucleoside Phosphates genetics, Humans, Male, Methylation, Prostatic Neoplasms metabolism, Receptor, Endothelin B, Receptors, Endothelin metabolism, Tumor Cells, Cultured, Dinucleoside Phosphates metabolism, Prostatic Neoplasms genetics, Receptors, Endothelin genetics, Regulatory Sequences, Nucleic Acid
- Abstract
Production of the potent vasoconstrictor endothelin-1 (ET-1) by human prostate cancer cells accompanies prostate cancer progression in vivo. The predominant endothelin receptor expressed by normal prostate epithelium, ETB, is not expressed by any of the established human prostate cancer cell lines, and ETB binding is decreased on prostate cancer tissues. ETB, which may mediate ET-1 clearance and may inhibit ET-1 secretion, is encoded by a gene that contains a 5' CpG island encompassing the transcriptional regulatory region. We examined this regulatory region of the ETB receptor gene (EDNRB) to determine whether hypermethylation of cytidine nucleotides accompanies decreased ETB expression in human prostate cancer. We found somatic methylation of CpG island sequences in EDNRB in 5 of 5 human prostate cancer cell lines, 15 of 21 primary prostate cancer tissues, and 8 of 14 prostate cancer metastases (70% of samples overall). Normal tissues contained only unmethylated EDNRB. Treatment of human prostatic carcinoma cell line cultures with 5-azacytidine induced ETB mRNA expression, suggesting that CpG island methylation changes might accompany the apparent transcriptional silencing of EDNRB in vivo.
- Published
- 1997
24. Human astrocytoma U138MG cells express predominantly type-A endothelin receptor.
- Author
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Wu-Wong JR, Chiou W, Magnuson SR, Bianchi BR, and Lin CW
- Subjects
- Base Sequence, Binding, Competitive, Cell Membrane metabolism, Colforsin pharmacology, Cyclic AMP metabolism, DNA Primers chemistry, Endocytosis drug effects, Endothelin Receptor Antagonists, Endothelins pharmacology, Guanylyl Imidodiphosphate metabolism, Guanylyl Imidodiphosphate pharmacology, Histamine pharmacology, Humans, Isoproterenol pharmacology, Ligands, Molecular Sequence Data, Phosphatidylinositols metabolism, Polymerase Chain Reaction, Protein Binding, Pyrimidines, RNA, Messenger analysis, Receptor, Endothelin A, Sulfonamides, Tumor Cells, Cultured, Astrocytoma metabolism, Endothelins metabolism, Receptors, Endothelin metabolism
- Abstract
Endothelin-1 (ET-1) binding to human astrocytoma U138MG cells was time-dependent, and bound [125I]ET-1 was difficult to dissociate. The B(max) and Kd values of [125I]ET-1 binding were 70 fmol/mg and 0.07 nM, respectively. Interestingly, different from other astrocytoma cells and astrocytes, the U138MG cells expressed predominantly ETA receptor as shown by RT-PCR results and binding studies. ET-1, FR139317, BQ123, PD142893 and Ro46-2005 inhibited specific [125I]ET-1 binding with Ki values of 0.10, 0.53, 4.3, 22, and 320 nM, respectively. ETB selective ligands ET-3 and IRL1620 were much less potent. The inhibitory effects of antagonists BQ123 and PD142893 on [125I]ET-1 binding diminished following the incubation time. ET-1 binding caused a modest stimulation in phosphatidylinositol hydrolysis with an EC50 value of 24 nM. In comparison to the human U373MG cells, ET-1-induced receptor internalization in U138MG cells was less efficient with 42% of bound ET-1 internalized after 30 min of incubation. These results imply that human astrocytoma cells/astrocytes are able to express either ETA or ETB receptor under different pathophysiological conditions.
- Published
- 1996
- Full Text
- View/download PDF
25. Endothelin-1 production and decreased endothelin B receptor expression in advanced prostate cancer.
- Author
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Nelson JB, Chan-Tack K, Hedican SP, Magnuson SR, Opgenorth TJ, Bova GS, and Simons JW
- Subjects
- Apoptosis drug effects, Atrasentan, Base Sequence, Cell Division drug effects, Cell Line, Culture Media, Serum-Free, DNA Primers, DNA, Neoplasm analysis, Endothelin Receptor Antagonists, Endothelins pharmacology, Epidermal Growth Factor pharmacology, Fibroblast Growth Factor 2 pharmacology, Humans, Immunohistochemistry, Insulin-Like Growth Factor I pharmacology, Insulin-Like Growth Factor II pharmacology, Male, Mitotic Index, Molecular Sequence Data, Neoplasm Metastasis, Platelet-Derived Growth Factor pharmacology, Polymerase Chain Reaction, Prostate metabolism, Prostatectomy, Prostatic Hyperplasia metabolism, Prostatic Neoplasms pathology, Prostatic Neoplasms surgery, Pyrrolidines pharmacology, RNA, Messenger biosynthesis, Receptor, Endothelin B, Tumor Cells, Cultured, Endothelins biosynthesis, Gene Expression drug effects, Growth Substances pharmacology, Prostatic Neoplasms metabolism, Receptors, Endothelin biosynthesis
- Abstract
The potent vasoconstrictor endothelin-1 (ET-1) is at its highest concentration in the normal human ejaculate and is associated with the progression of metastatic prostate cancer. ET-1 protein expression is detected in situ in 14 of 14 primary cancers and 14 of 16 metastatic sites of human prostatic carcinoma. Exogenous ET-1 induces prostate cancer proliferation directly and enhances the mitogenic effects of insulin-like growth factor I, insulin-like growth factor II, platelet-derived growth factor, basic fibroblast growth factor, and epidermal growth factor in serum-free conditions in vitro. The ETA-selective receptor antagonist A-127722 inhibits ET-1-stimulated growth, but the ETB-selective receptor antagonist BQ-788 does not. ET-3, an ETB-selective agonist, also had no effect on prostate cancer growth. No specific ETB-binding sites could be demonstrated in any established human prostate cancer cell line tested, and ETB mRNA, detected by reverse transcription PCR, was reduced. The predominance of ETB binding on human benign prostatic epithelial tissue is not present in metastatic prostate cancer by autoradiography. In human prostate cancer progression to metastases, ET-1 and ETA expression are retained, whereas ETB receptor expression is reduced.
- Published
- 1996
26. Pharmacological characterization of A-127722: an orally active and highly potent ETA-selective receptor antagonist.
- Author
-
Opgenorth TJ, Adler AL, Calzadilla SV, Chiou WJ, Dayton BD, Dixon DB, Gehrke LJ, Hernandez L, Magnuson SR, Marsh KC, Novosad EI, Von Geldern TW, Wessale JL, Winn M, and Wu-Wong JR
- Subjects
- Administration, Oral, Animals, Arachidonic Acid metabolism, Atrasentan, CHO Cells, Cricetinae, Dogs, Female, Humans, Macaca fascicularis, Male, Phosphatidylinositols metabolism, Pyrrolidines pharmacokinetics, Rats, Rats, Sprague-Dawley, Receptor, Endothelin A, Stereoisomerism, Vasoconstriction drug effects, Endothelin Receptor Antagonists, Pyrrolidines pharmacology
- Abstract
Endothelins (ET) are potent vasoactive peptides implicated in the pathogenesis of a number of vascular diseases. The effects of ET on mammalian organs and cells are initiated by binding to ETA or ETB receptors. In this report, we document the pharmacology of A-127722, a novel ETA-selective receptor antagonist. A-127722 inhibits [125I]ET-1 binding to cloned human ETA and ETB receptors competitively with Ki values of 69 pM and 139 nM, respectively. A-127722 exhibits a dose-dependent inhibition of ET-1-induced arachidonic acid release in human pericardium smooth muscle cells with a pA2 value of 10.5 and inhibits ET-1-induced vasoconstriction in isolated rat aorta with a pA2 value of 9.2. In vivo, A-127722 dose-dependently blocks the pressor response to ET-1 (0.3 nmol/kg i.v.) in conscious rats. Statistically significant (P < .05) antagonism is seen at doses greater than 0.1 mg/kg p.o. Maximal inhibition, at 10 mg/kg, remains constant for at least 8 hr after dosing. No effect is seen on the ETB-mediated transient vasodepressor effect of exogenous ET-1. In conclusion, A-127722 is ETA-selective, orally bioavailable and efficacious for inhibiting the effects of ET in the rat, and A-127722 is the most potent ET receptor antagonist yet reported.
- Published
- 1996
27. Endothelin receptor in human astrocytoma U373MG cells: binding, dissociation, receptor internalization.
- Author
-
Wu-Wong JR, Chiou WJ, Magnuson SR, and Opgenorth TJ
- Subjects
- Astrocytoma metabolism, Base Sequence, DNA Primers, Endocytosis, Endothelin Receptor Antagonists, Endothelins metabolism, Humans, Molecular Sequence Data, Protein Binding, Radioligand Assay, Tumor Cells, Cultured, Receptors, Endothelin metabolism
- Abstract
Endothelin (ET) receptor in human astrocytoma U373MG cells was characterized. ET-1, ET-3, sarafotoxin S6C, IRL1620, BQ788, Ro46-2005 and PD142893 inhibited specific [125I]ET-1 binding with Ki values of 0.03 0.06, 0.74, 5.01, 4.45, 2275 and 157 nM, respectively. ETA selective antagonists BQ123 and FR139317 at 1 microM did not block [125I]ET-1 binding. Reverse transcription-polymerase chain reaction confirmed the results from competition studies that U373 cells expressed predominantly ETB receptor. The Bmax and KD values of [125I]ET-1 binding were 0.15 pmol/1 x 10(6) cells and 0.23 nM. The molecular mass for the receptor was 45 kDa. ET-1 binding did not stimulate Ca+2 mobilization, phosphatidylinositol hydrolysis or arachidonic acid release, nor did it affect the intracellular cAMP or cGMP level. Interestingly, a majority of ET (> 80%) bound to the receptor was rapidly internalized, consistent with emerging evidence that a major function of ETB receptor is to clear ET. [125I]ET-1 binding was time-dependent and bound [125I]ET-1 was difficult to dissociate. In contrast, bound antagonists were much easier to dissociate. The results suggest that agonists and antagonists of the ET receptor exhibited different dissociation characteristics, with antagonist binding more reversible than agonist binding.
- Published
- 1995
28. Endothelin receptor agonists and antagonists exhibit different dissociation characteristics.
- Author
-
Wu-Wong JR, Chiou WJ, Magnuson SR, and Opgenorth TJ
- Subjects
- Amino Acid Sequence, Animals, Binding, Competitive, Brain Chemistry, CHO Cells, Cricetinae, Endothelins chemistry, Molecular Sequence Data, Oligopeptides pharmacology, Peptide Fragments metabolism, Pyrimidines pharmacology, Receptors, Endothelin metabolism, Sulfonamides pharmacology, Swine, Endothelin Receptor Antagonists, Endothelins metabolism, Receptors, Endothelin agonists
- Abstract
Endothelins (ETs) are vasoconstricting peptides that bind to membrane receptors to initiate their physiological effects. This report compares the dissociation characteristics of selected ET agonists and antagonists, and studies the effects of any difference in dissociation characteristics on the potency of antagonists. Competition studies using various ET receptor ligands against [125I]ET-1 or [125I]ET-3 binding demonstrated that porcine cerebellum membranes contain predominantly ETB receptor. [125I]IRL1620 associated with the receptors in a time-dependent manner. Although bound [125I]IRL1620 was easier to dissociate than bound [125I]ET-3, both agonists exhibited a dissociation half life > 20 h. For non-radiolabeled ligands, bind-and-wash studies were employed in which membranes were pre-incubated with unlabeled ligand followed by extensive washing before assaying for [125I]ET-1 binding. Results from bind-and-wash studies confirmed that bound non-radiolabeled IRL1620 and ET were as difficult to dissociate as [125I]ligands. In contrast, bound PD142893 and Ro46-2005 were easily dissociated from ETB receptors. Consequently, the inhibitory effects of PD142893 and Ro46-2005 on [125I]agonist binding diminished following incubation time. In cloned human ETA and ETB receptors, bound ET-1 was also more difficult to dissociate than bound antagonists. These results suggest that the differences in the dissociation characteristics of ET receptor agonists vs. antagonists may account for the diminished potency of Ro46-2005 and PD142893 as a function of incubation time.
- Published
- 1994
- Full Text
- View/download PDF
29. Identification and characterization of type A endothelin receptors in MMQ cells.
- Author
-
Wu-Wong JR, Chiou W, Magnuson SR, Witte DG, and Lin CW
- Subjects
- Animals, Base Sequence, Cross-Linking Reagents, Endothelins metabolism, Endothelins pharmacology, Hydrolysis, Molecular Sequence Data, Molecular Weight, Phosphatidylinositols metabolism, Pituitary Gland cytology, Pituitary Gland drug effects, Pituitary Gland metabolism, Polymerase Chain Reaction, RNA, Messenger chemistry, RNA, Messenger genetics, Radioligand Assay, Rats, Receptors, Endothelin chemistry, Receptors, Endothelin genetics, Transcription, Genetic, Tumor Cells, Cultured, Pituitary Gland chemistry, Receptors, Endothelin metabolism
- Abstract
Recently the identification of endothelin (ET) receptors and ET in the pituitary gland has induced much interest in studying the potential role of ET in neuroendocrine regulation. MMQ, isolated from rat pituitary, is a prolactin-secreting cell line. Similar to primary pituitary cells, the secretory response in MMQ cells is regulated by calcium and cAMP. In this report, by combining radioligand binding, cross-linking, and reverse transcription-polymerase chain reaction (RT-PCR) techniques, we characterized the properties of ET receptors in MMQ cells. 125I-ET-1 bound to membranes prepared from MMQ cells in a time-dependent manner, reaching a plateau at 150 min at 25 degrees. 125I-ET-1 binding was inhibited by ET-1 with an IC50 value of 0.17 nM but was only partially (approximately 60%) inhibited by 1 microM ET-3. BQ123 (cyclo[D-Trp-D-Asp-Pro-D-Val-Leu]) and FR139317 (cC6N-L-Leu-D-Trp-Me-D-2Pya-OH), two antagonists that are selective for the ETA receptor, inhibited 125I-ET-1 binding with IC50 values of 5 nM and 0.9 nM, respectively. RT-PCR detected mRNA for the ETA receptor but not the ETB receptor. RT-PCR detected mRNA for both ETA and ETB receptors in control experiments using rat kidney RNA. 125I-ET-1 binding was saturable, reaching a plateau at 0.1 nM. Scatchard analysis of the data from saturation studies yielded a straight line, with Bmax and Kd values of 0.11 pmol/mg and 0.038 nM, respectively. The number of receptors was 6.6 x 10(10) sites/mg of protein or 13,200 sites/cell. Cross-linking studies using bis(sulfosuccinimidyl)suberate revealed an apparent molecular mass of 65 kDa for the ET receptor. Labeling of the 65-kDa protein was abolished by ET-1, BQ123, or FR139317 at 0.1 microM. ET-1 stimulated the formation of total inositol phosphates in a dose-dependent manner, with an EC50 of 0.1 nM. The phosphatidylinositol hydrolysis response was also inhibited by BQ123 and FR139317. We conclude that MMQ cells express the ETA receptor, which is coupled to phosphatidylinositol hydrolysis. MMQ cells may be useful for elucidating the mechanisms through which ET exerts its regulatory effects on pituitary cells.
- Published
- 1993
30. Murine glutamine synthetase: cloning, developmental regulation, and glucocorticoid inducibility.
- Author
-
Magnuson SR and Young AP
- Subjects
- Age Factors, Animals, Blotting, Northern, Brain physiology, Cloning, Molecular, Gene Expression Regulation, Kidney physiology, Liver physiology, Muscles physiology, Restriction Mapping, Retina physiology, Glutamate-Ammonia Ligase genetics, Mice genetics
- Abstract
We have cloned the murine glutamine synthetase (GS) gene and measured GS enzyme activity and mRNA in five tissues (retina, brain, liver, kidney, and skeletal muscle) during perinatal development. Retinal GS enzyme activity increases 200-fold between Day 1 and Day 21 and is accompanied by an increase in the level of GS mRNA; developmental regulation in other tissues is much less dramatic. Based on Southern blotting analysis, a single GS gene gives rise to the tissue-specific patterns of GS mRNA expression. The increase in murine retinal GS observed during perinatal development is similar in magnitude to that observed in the chicken retina just prior to hatching. In the embryonic chicken retina, glucocorticoid hormones mediate a large increase in the level of GS mRNA. However, although glucocorticoids induce a 12-fold increase in GS mRNA in murine skeletal muscle, expression of the retinal enzyme and mRNA is only modestly glucocorticoid-inducible in the mouse. Therefore, despite the hormonal responsiveness of the murine GS gene, it is not likely that glucocorticoids are important physiological modulators of the developmental rise in murine retinal GS.
- Published
- 1988
- Full Text
- View/download PDF
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