159 results on '"Pingsheng Ji"'
Search Results
2. Metabolomics and Microbiomics Reveal Impacts of Rhizosphere Metabolites on Alfalfa Continuous Cropping
- Author
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Ruiting Wang, Jinxin Liu, Wanyi Jiang, Pingsheng Ji, and Yonggang Li
- Subjects
alfalfa ,continuous cropping obstacle ,root rot ,metabolomics ,microbiomics ,autotoxic substances ,Microbiology ,QR1-502 - Abstract
Alfalfa long-term continuous cropping (CC) can pose a serious threat to alfalfa production. However, the mechanism of alfalfa CC obstacle is unclear as of today. Our preliminary study showed that the main factors of CC obstacle were not the lack of nutrients or water in alfalfa rhizosphere soils. Further, we evaluated physic-chemical property, microbial population structure, and metabolite differences of alfalfa rhizosphere soils with CC for 1, 7, and 14 years based on analysis of metabolomics and microbiomics. Four phenolic acid metabolites, including p-coumaric acid, ferulic acid, vanillic acid, and p-hydroxybenzoic acid, were found to have significant differences among different CC years, which may be the key factors of CC obstacle. Among them, p-coumaric acid and ferulic acid could significantly decrease the germination rate of alfalfa seeds by 21.11 and 16.67% at the concentration of 100 μg/mL and the height (root length) of alfalfa seedlings by 21% (32.9%) and 13.72% (16.45%). Moreover, these metabolites could effectively promote the growth of some pathogenic fungi, causing alfalfa root rot. Among them, p-coumaric acid obviously and significantly aggravated the occurrence of alfalfa root rot. With the increase of CC years, soil microbial community changed from fungi to bacteria; fungi decreased by 10.83%, fungi increased by 8.08%, and beneficial microorganisms decreased with the increase of CC years. Field analysis and experimental verification showed that the above results were consistent with that of CC obstacle in the field. Among the key metabolites, the autotoxicity of p-coumaric acid was the strongest. This study fully proved that the continuous accumulation of autotoxic substances in alfalfa rhizosphere was the key factor causing alfalfa CC obstacles.
- Published
- 2022
- Full Text
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3. Phylogenetic and phenotypic characterization of Fusarium oxysporum f. sp. niveum isolates from Florida-grown watermelon.
- Author
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James C Fulton, B Sajeewa Amaradasa, Tülin S Ertek, Fanny B Iriarte, Tatiana Sanchez, Pingsheng Ji, Mathews L Paret, Owen Hudson, Md Emran Ali, and Nicholas S Dufault
- Subjects
Medicine ,Science - Abstract
Fusarium wilt of watermelon (Citrullus lanatus) caused by Fusarium oxysporum f. sp. niveum (Fon), has become an increasing concern of farmers in the southeastern USA, especially in Florida. Management of this disease, most often through the use of resistant cultivars and crop rotation, requires an accurate understanding of an area's pathogen population structure and phenotypic characteristics. This study improved the understanding of the state's pathogen population by completing multilocus sequence analysis (MLSA) of two housekeeping genes (BT and TEF) and two loci (ITS and IGS), aggressiveness and race-determining bioassays on 72 isolates collected between 2011 and 2015 from major watermelon production areas in North, Central, and South Florida. Multilocus sequence analysis (MLSA) failed to group race 3 isolates into a single large clade; moreover, clade membership was not apparently correlated with aggressiveness (which varied both within and between clades), and only slightly with sampling location. The failure of multilocus sequence analysis using four highly conserved housekeeping genes and loci to clearly group and delineate known Fon races provides justification for future whole genome sequencing efforts whose more robust genomic comparisons will provide higher resolution of intra-species genetic distinctions. Consequently, these results suggest that identification of Fon isolates by race determination alone may fail to detect economically important phenotypic characteristics such as aggressiveness leading to inaccurate risk assessment.
- Published
- 2021
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4. Comparative Study of Phosphorous-Acid-Containing Products for Managing Phytophthora Blight of Bell Pepper
- Author
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Gia Khuong Hoang Hua, Pingsheng Ji, Albert K. Culbreath, and Md Emran Ali
- Subjects
phosphorous acid ,Phytophthora capsici ,inhibition ,induced systemic resistance ,phytotoxicity ,Agriculture - Abstract
Phytophthora blight of pepper caused by Phytophthora capsici is a major constraint to bell pepper (Capsicum annuum) production. The long-term effectiveness of chemicals currently in use against P. capsici is uncertain due to the development of fungicide resistance by this pathogen. Hence, the efficacy of alternative chemicals such as phosphorous-acid-containing products was evaluated in this study. In in vitro tests, ProPhyt, K-Phite, Lexx-A-Phos, Agri-Fos, and Nutri-Phite were less effective in inhibiting mycelial growth (EC50 = 50.5 to 324.4 µg mL−1) and sporangium formation (EC50 = 6.1 to 225.7 µg mL−1) of two P. capsici isolates, but more effective against zoospore germination compared with mefenoxam. Among phosphorous-acid-containing products tested, Nutri-Phite was most effective in inhibiting mycelial growth of both P. capsici isolates. In greenhouse studies, Nutri-Phite was effective against Phytophthora blight used as drench. The use of Nutri-Phite, Agri-Fos, ProPhyt, and K-Phite could induce systemic resistance against foliar blight when applied to the root and potting mix. The results indicated that some phosphorous-acid-containing products have the potential to lower disease occurrence and delay Phytophthora blight of bell pepper without phytotoxic effects. The utility of the systemic protection induced by these products is promising in Phytophthora blight management.
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- 2022
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5. Molecular Characterization of Laboratory Mutants of Fusarium oxysporum f. sp. niveum Resistant to Prothioconazole, a Demethylation Inhibitor (DMI) Fungicide
- Author
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Owen Hudson, Sumyya Waliullah, Pingsheng Ji, and Md Emran Ali
- Subjects
fungicide resistance ,Fusarium oxysporum niveum ,Fusarium wilt of watermelon ,prothioconazole ,DMI fungicide ,mutagenesis ,Biology (General) ,QH301-705.5 - Abstract
Fusarium oxysporum f. sp. niveum (FON) is the causal agent of Fusarium wilt in watermelon, an international growth-limiting pathogen of watermelon cultivation. A single demethylation inhibitor (DMI) fungicide, prothioconazole, is registered to control this pathogen, so the risk of resistance arising in the field is high. To determine and predict the mechanism by which FON could develop resistance to prothioconazole, FON isolates were mutagenized using UV irradiation and subsequent fungicide exposure to create artificially resistant mutants. Isolates were then put into three groups based on the EC50 values: sensitive, intermediately resistant, and highly resistant. The mean EC50 values were 4.98 µg/mL for the sensitive, 31.77 µg/mL for the intermediately resistant, and 108.33 µg/mL for the highly resistant isolates. Isolates were then sequenced and analyzed for differences in both the coding and promoter regions. Two mutations were found that conferred amino acid changes in the target gene, CYP51A, in both intermediately and highly resistant mutants. An expression analysis for the gene CYP51A also showed a significant increase in the expression of the highly resistant mutants compared to the sensitive controls. In this study, we were able to identify two potential mechanisms of resistance to the DMI fungicide prothioconazole in FON isolates: gene overexpression and multiple point mutations. This research should expedite growers’ and researchers’ ability to detect and manage fungicide-resistant phytopathogens.
- Published
- 2021
- Full Text
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6. Induction of resistance in tomato against Sclerotium rolfsii by application of seaweed extract and chemical compounds
- Author
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Mazhar Abbas, Saba Shakeel, Pingsheng Ji, and Muhammad Zafar-ul-Hye
- Subjects
Insect Science ,Agronomy and Crop Science - Published
- 2022
7. Genetic and phenotypic diversity of Fusarium oxysporum f. sp. niveum populations from watermelon in the southeastern United States.
- Author
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Aparna Petkar, Karen Harris-Shultz, Hongliang Wang, Marin Talbot Brewer, Leilani Sumabat, and Pingsheng Ji
- Subjects
Medicine ,Science - Abstract
Fusarium wilt of watermelon, caused by Fusarium oxysporum f. sp. niveum (FON), occurs worldwide and is responsible for substantial yield losses in watermelon-producing areas of the southeastern United States. Management of this disease largely relies on the use of integrated pest management (i.e., fungicides, resistant cultivars, crop rotation, etc.). Knowledge about race structure and genetic diversity of FON in the southeastern US is limited. To determine genetic diversity of the pathogen, FON isolates were collected from symptomatic watermelon plants in commercial fields in Georgia and Florida, USA, and identified based on morphological characteristics and PCR analysis using FON-specific primers. Discriminant analysis of principal components (DAPC) of 99 isolates genotyped with 15 simple sequence repeat (SSR) markers grouped the isolates in eight distinct clusters with two prominent clusters (clusters 1 and 8). Cluster 1 consisted of a total of 14 isolates, out of which 85.7% of the isolates were collected in Florida. However, most of the isolates (92.4%) in cluster 8 were collected in Georgia. Both DAPC and pairwise population differentiation analysis (ФPT) revealed that the genetic groups were closely associated with geographical locations of pathogen collection. Three races of FON (races 0, 2 and 3) were identified in the phenotypic analysis; with race 3 identified for the first time in Georgia. Overall, 5.1%, 38.9% and 55.9% of the isolates were identified as race 0, race 2 and race 3, respectively. The majority of the isolates in cluster 1 and cluster 8 belonged to either race 2 (35.6%) or race 3 (45.8%). Additionally, no relationship between genetic cluster assignment and races of the isolates was observed. The information obtained on genotypic and phenotypic diversity of FON in the southeastern US will help in development of effective disease management programs to combat Fusarium wilt.
- Published
- 2019
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8. Comparative analysis of different molecular and serological methods for detection of Xylella fastidiosa in blueberry.
- Author
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Sumyya Waliullah, Owen Hudson, Jonathan E Oliver, Phillip M Brannen, Pingsheng Ji, and Md Emran Ali
- Subjects
Medicine ,Science - Abstract
Bacterial leaf scorch, caused by Xylella fastidiosa, is a major threat to blueberry production in the southeastern United States. Management of this devastating disease is challenging and often requires early detection of the pathogen to reduce major loss. There are several different molecular and serological detection methods available to identify the pathogen. Knowing the efficiency and suitability of these detection techniques for application in both field and laboratory conditions is important when selecting the appropriate detection tool. Here, we compared the efficiency and the functionality of four different molecular detection techniques (PCR, real-time PCR, LAMP and AmplifyRP® Acceler8™) and one serological detection technique (DAS-ELISA). The most sensitive method was found to be real-time PCR with the detection limit of 25 fg of DNA molecules per reaction (≈9 genome copies), followed by LAMP at 250 fg per reaction (≈90 copies), AmplifyRP® Acceler8™ at 1 pg per reaction (≈350 copies), conventional PCR with nearly 1.25 pg per reaction (≈ 440 copies) and DAS-ELISA with 1x105 cfu/mL of Xylella fastidiosa. Validation between assays with 10 experimental samples gave consistent results beyond the variation of the detection limit. Considering robustness, portability, and cost, LAMP and AmplifyRP® Acceler8™ were not only the fastest methods but also portable to the field and didn't require any skilled labor to carry out. Among those two, AmplifyRP® Acceler8™ was faster but more expensive and less sensitive than LAMP. On the other hand, real-time PCR was the most sensitive assay and required comparatively lesser time than C-PCR and DAS-ELISA, which were the least sensitive assays in this study, but all three assays are not portable and needed skilled labor to proceed. These findings should enable growers, agents, and diagnosticians to make informed decisions regarding the selection of an appropriate diagnostic tool for X. fastidiosa on blueberry.
- Published
- 2019
- Full Text
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9. Marker Development for Differentiation of Fusarium oxysporum f. sp. Niveum Race 3 from Races 1 and 2
- Author
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Owen Hudson, Sumyya Waliullah, James C. Fulton, Pingsheng Ji, Nicholas S. Dufault, Anthony Keinath, and Md Emran Ali
- Subjects
Fusarium oxysporum f. sp. niveum ,comparative genomics ,race differentiation ,polymerase chain reaction ,watermelon ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Fusarium wilt of watermelon, caused by Fusarium oxysporum f. sp. niveum (FON), is pathogenic only to watermelon and has become one of the main limiting factors in watermelon production internationally. Detection methods for this pathogen are limited, with few published molecular assays available to differentiate FON from other formae speciales of F. oxysporum. FON has four known races that vary in virulence but are difficult and costly to differentiate using traditional inoculation methods and only race 2 can be differentiated molecularly. In this study, genomic and chromosomal comparisons facilitated the development of a conventional polymerase chain reaction (PCR) assay that could differentiate race 3 from races 1 and 2, and by using two other published PCR markers in unison with the new marker, the three races could be differentiated. The new PCR marker, FNR3-F/FNR3-R, amplified a 511 bp region on the “pathogenicity chromosome” of the FON genome that is absent in race 3. FNR3-F/FNR3-R detected genomic DNA down to 2.0 pg/µL. This marker, along with two previously published FON markers, was successfully applied to test over 160 pathogenic FON isolates from Florida, Georgia, and South Carolina. Together, these three FON primer sets worked well for differentiating races 1, 2, and 3 of FON. For each marker, a greater proportion (60 to 90%) of molecular results agreed with the traditional bioassay method of race differentiation compared to those that did not. The new PCR marker should be useful to differentiate FON races and improve Fusarium wilt research.
- Published
- 2021
- Full Text
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10. Development of a Rapid Sporulation Method of Fusarium graminearum Using Liquid Cultivation
- Author
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Chunjie Li, Baiyan Xue, Pingsheng Ji, Lei Sun, Yonggang Li, Shuang Wang, and Miss Xue Zhang
- Subjects
Fusarium ,biology ,food and beverages ,Plant Science ,Fungus ,biology.organism_classification ,Incubation period ,Conidium ,Spore ,chemistry.chemical_compound ,Horticulture ,chemistry ,Stalk ,Ultraviolet light ,Cellulose ,Agronomy and Crop Science - Abstract
Fusarium graminearum is an important fungus causing a variety of maize diseases, including stalk rot, ear rot, and sheath rot. However, conidia of F. graminearum are not easily obtained under normal culture conditions, which seriously affects the identification and pathogenicity assessment of the isolates and screening of resistance sources. This study was undertaken to develop and utilize a rapid sporulation technique of F. graminearum using liquid cultivation, which could meet the needs of various tests. The results show that the optimum conditions for sporulation of F. graminearum were as follows: culture medium, 0.154 mol/liter of saline; temperature, 28 to 30°C; incubation time, 96 h; initial pH, 9 to 10; illumination, continuous ultraviolet light; and shaking speed, 150 rpm. Using this culture method, conidial concentration of tested F. graminearum strains can reach >1.5 × 105 conidia/ml. Compared with the existing methods using mung bean and carboxylmethyl cellulose as matrix, saline is relatively inexpensive, and the culture process, relatively quick. Overall, this study provided a systematic, rapid, and simple method to obtain a large number of conidia of F. graminearum.
- Published
- 2022
11. Development of Loop-Mediated Isothermal Amplification Assay for Rapid Detection of Cucurbit Leaf Crumple Virus
- Author
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Sumyya Waliullah, Kai-Shu Ling, Elizabeth J. Cieniewicz, Jonathan E. Oliver, Pingsheng Ji, and Md Emran Ali
- Subjects
cucurbit leaf crumple virus ,begomovirus ,detection ,loop-mediated isothermal amplification ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
A loop-mediated isothermal amplification (LAMP) assay was developed for simple, rapid and efficient detection of Cucurbit leaf crumple virus (CuLCrV), one of the most important begomoviruses that infects cucurbits worldwide. A set of six specific primers targeting a total 240 nt sequence regions in the DNA A of CuLCrV were designed and synthesized for detection of CuLCrV from infected leaf tissues using real-time LAMP amplification with the Genie® III system, which was further confirmed by gel electrophoresis and SYBR™ Green I DNA staining for visual observation. The optimum reaction temperature and time were determined, and no cross-reactivity was seen with other begomoviruses. The LAMP assay could amplify CuLCrV from a mixed virus assay. The sensitivity assay demonstrated that the LAMP reaction was more sensitive than conventional PCR, but less sensitive than qPCR. However, it was simpler and faster than the other assays evaluated. The LAMP assay also amplified CuLCrV-infected symptomatic and asymptomatic samples more efficiently than PCR. Successful LAMP amplification was observed in mixed virus-infected field samples. This simple, rapid, and sensitive method has the capacity to detect CuLCrV in samples collected in the field and is therefore suitable for early detection of the disease to reduce the risk of epidemics.
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- 2020
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12. The Interactomic Analysis Reveals Pathogenic Protein Networks in Phomopsis longicolla Underlying Seed Decay of Soybean
- Author
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Shuxian Li, Bryan Musungu, David Lightfoot, and Pingsheng Ji
- Subjects
Phomopsis longicolla ,soybean ,interactome ,network ,protein–protein interactions ,pathogenicity ,Genetics ,QH426-470 - Abstract
Phomopsis longicolla T. W. Hobbs (syn. Diaporthe longicolla) is the primary cause of Phomopsis seed decay (PSD) in soybean, Glycine max (L.) Merrill. This disease results in poor seed quality and is one of the most economically important seed diseases in soybean. The objectives of this study were to infer protein–protein interactions (PPI) and to identify conserved global networks and pathogenicity subnetworks in P. longicolla including orthologous pathways for cell signaling and pathogenesis. The interlog method used in the study identified 215,255 unique PPIs among 3,868 proteins. There were 1,414 pathogenicity related genes in P. longicolla identified using the pathogen host interaction (PHI) database. Additionally, 149 plant cell wall degrading enzymes (PCWDE) were detected. The network captured five different classes of carbohydrate degrading enzymes, including the auxiliary activities, carbohydrate esterases, glycoside hydrolases, glycosyl transferases, and carbohydrate binding molecules. From the PPI analysis, novel interacting partners were determined for each of the PCWDE classes. The most predominant class of PCWDE was a group of 60 glycoside hydrolases proteins. The glycoside hydrolase subnetwork was found to be interacting with 1,442 proteins within the network and was among the largest clusters. The orthologous proteins FUS3, HOG, CYP1, SGE1, and the g5566t.1 gene identified in this study could play an important role in pathogenicity. Therefore, the P. longicolla protein interactome (PiPhom) generated in this study can lead to a better understanding of PPIs in soybean pathogens. Furthermore, the PPI may aid in targeting of genes and proteins for further studies of the pathogenicity mechanisms.
- Published
- 2018
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13. Stress Sensitivity Is Associated with Differential Accumulation of Reactive Oxygen and Nitrogen Species in Maize Genotypes with Contrasting Levels of Drought Tolerance
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Liming Yang, Jake C. Fountain, Hui Wang, Xinzhi Ni, Pingsheng Ji, Robert D. Lee, Robert C. Kemerait, Brian T. Scully, and Baozhu Guo
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maize seedlings ,drought stress ,reactive oxygen species ,reactive nitrogen species ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Drought stress decreases crop growth, yield, and can further exacerbate pre-harvest aflatoxin contamination. Tolerance and adaptation to drought stress is an important trait of agricultural crops like maize. However, maize genotypes with contrasting drought tolerances have been shown to possess both common and genotype-specific adaptations to cope with drought stress. In this research, the physiological and metabolic response patterns in the leaves of maize seedlings subjected to drought stress were investigated using six maize genotypes including: A638, B73, Grace-E5, Lo964, Lo1016, and Va35. During drought treatments, drought-sensitive maize seedlings displayed more severe symptoms such as chlorosis and wilting, exhibited significant decreases in photosynthetic parameters, and accumulated significantly more reactive oxygen species (ROS) and reactive nitrogen species (RNS) than tolerant genotypes. Sensitive genotypes also showed rapid increases in enzyme activities involved in ROS and RNS metabolism. However, the measured antioxidant enzyme activities were higher in the tolerant genotypes than in the sensitive genotypes in which increased rapidly following drought stress. The results suggest that drought stress causes differential responses to oxidative and nitrosative stress in maize genotypes with tolerant genotypes with slower reaction and less ROS and RNS production than sensitive ones. These differential patterns may be utilized as potential biological markers for use in marker assisted breeding.
- Published
- 2015
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14. Influence of Root Exudates and Soil on Attachment of Pasteuria penetrans to Meloidogyne arenaria
- Author
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CHANG LIU, PATRICIA TIMPER, PINGSHENG JI, TESFAMARIAM MEKETE, and SOUMI JOSEPH
- Subjects
Meloidogyne arenaria ,Pasteuria penetrans ,root exudates ,root-knot nematode ,spore attachment ,Biology (General) ,QH301-705.5 - Published
- 2017
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15. Fitness and Competitive Ability of Field Isolates of Phytophthora capsici Resistant or Sensitive to Fluopicolide
- Author
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Pingsheng Ji and Li Wang
- Subjects
0106 biological sciences ,biology ,Zoospore ,Inoculation ,Plant Science ,biology.organism_classification ,01 natural sciences ,Fungicide ,010602 entomology ,chemistry.chemical_compound ,Horticulture ,Phytophthora capsici ,chemistry ,Pepper ,Fluopicolide ,Blight ,Phytophthora ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
Phytophthora blight, caused by Phytophthora capsici, is one of the most destructive diseases in the production of solanaceous and cucurbitaceous vegetable crops. Fluopicolide has been used to control the disease; however, reduced efficacy of the fungicide was observed in Georgia. P. capsici isolates were collected from commercial vegetable fields in Georgia in 2018 and 2019 to determine sensitivity to fluopicolide, which were phenotyped to have 43.1% of the isolates as resistant. The fitness of resistant (R) and sensitive (S) isolates was assessed through mycelial growth and sporulation assays exposed to the fungicide (0 or 50 µg/ml). Fluopicolide did not reduce mycelial growth, sporangial production, and zoospore germination of the R isolates. In the absence of fluopicolide, there was no significant difference between the R and S isolates in sporangial production but mycelial growth and zoospore germination of the R isolates was greater than the S isolates (P = 0.01 and 0.001, respectively). The R isolates had an ability similar to that of the S isolates to induce disease on Aristotle bell pepper, and most of the R and S isolates caused the same level of disease on Paladin. Inoculating squash fruit using different R:S ratios and recovering R and S isolates after five cycles of inoculation resulted in similar trends in changes of R versus S isolate ratios. Overall, it appeared that fitness and competitive ability of the R isolates were not reduced compared with the S isolates. This is the first report of the occurrence of field isolates of P. capsici resistant to fluopicolide in the world. The results have significant implications in providing guidance for growers to avoid or limit use of this fungicide in vegetable production.
- Published
- 2021
16. Managing Stubborn Oomycete Plant Pathogens
- Author
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Chandrasekar S. Kousik, Lina M. Quesada-Ocampo, Anthony Keinath, Mary Hausbeck, Leah Granke, Rachel Naegele, and Pingsheng Ji
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Plant Science ,Horticulture - Abstract
Diseases caused by oomycete plant pathogens result in devastating losses to agriculture and native forests, despite the significant research efforts that have advanced our understanding of these organisms. Limiting these pathogens has been challenging to plant pathologists and plant health practitioners. In this first focus issue , titled Managing Stubborn Oomycete Plant Pathogens, Plant Health Progress has assembled an array of manuscripts on the biology and management of Phytophthora, Pythium, Pseudoperonospora, Peronospora, and Aphanomyces spp. This focus issue has 28 peer-reviewed papers including three diagnostic guides, three mini-reviews, three briefs, two surveys, and 17 research papers. Of the 28 papers, 20 are on diseases caused by Phytophthora, four on Pythium, three on downy mildews, and one on Aphanomyces. All advance our understanding of these stubborn oomycete pathogens.
- Published
- 2021
17. Detection of Phytophthora capsici from Irrigation Ponds in South Georgia
- Author
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Guy Hancock, Scott Carlson, Owen Hudson, Pingsheng Ji, Brian Hayes, Jeremy M. Kichler, Sumyya Waliullah, Emran Ali, Michasia Dowdy, Jake Price, Justin Hand, and Tucker Price
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Oomycete ,Irrigation ,biology ,fungi ,Crown (botany) ,food and beverages ,Plant Science ,Horticulture ,biology.organism_classification ,Irrigation water ,Phytophthora capsici ,Blight ,Phytophthora - Abstract
Phytophthora capsici, the causal agent of Phytophthora blight, is a prominent and economically damaging oomycete pathogen in South Georgia. P. capsici causes crown, root, leaf, stem, and fruit infections on a wide range of vegetable crops. Oomycete pathogens such as P. capsici are dispersed in water, as their zoospores are flagellated and can move through runoff. Irrigation ponds are often reservoirs for different pathogens, and reusing the captured runoff is increasing in popularity to decrease irrigation costs. This combination allows for unintended outbreaks of diseases by pumping the contaminated runoff onto susceptible crops. Detection and identification of these pathogens are crucial steps in disease management, and rapid detection can ensure timely application of disease control measures. In this study, 42 irrigation ponds in nine counties from South Georgia were surveyed for the presence of P. capsici using a novel filtration method in conjunction with a LAMP assay specific for P. capsici. Ten ponds in five counties were found to have P. capsici as detected from the assay, suggesting that testing of irrigation ponds for P. capsici and other pathogens should be conducted to assist in preventing disease outbreaks.
- Published
- 2021
18. Identification of fungal pathogens and analysis of genetic diversity ofFusarium tricinctumcausing root rots of alfalfa in north‐east China
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Yonggang Li, D. Jiang, Wenbo Han, T. X. Zhao, Pingsheng Ji, Karen R. Harris-Shultz, and Chuzhen Xu
- Subjects
Genetic diversity ,North east china ,Botany ,Genetics ,Fusarium tricinctum ,Amplified fragment length polymorphism ,Identification (biology) ,Plant Science ,Horticulture ,Biology ,Agronomy and Crop Science - Published
- 2020
19. Characterization of bacterial pathogens causing fruit soft rot and stem blight of bell pepper in Georgia, USA
- Author
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Emran Ali, Gia Khuong Hoang Hua, and Pingsheng Ji
- Subjects
0106 biological sciences ,0301 basic medicine ,biology ,Inoculation ,fungi ,food and beverages ,Pectobacterium carotovorum ,Plant Science ,biology.organism_classification ,16S ribosomal RNA ,01 natural sciences ,03 medical and health sciences ,Horticulture ,Bacterial soft rot ,030104 developmental biology ,Pepper ,Maceration (wine) ,Blight ,Ribosomal DNA ,010606 plant biology & botany - Abstract
Bacterial soft rot is one of the major destructive diseases affecting crop production worldwide. In summer 2017, soft rot of fruit and stem blight was observed on bell pepper in commercial fields in south Georgia, USA. Bacteria were isolated from infected fruits and stems, and 5 isolates (MPS05, MPS06, PF01–2, PF04–3 and PF05–3) were characterized in the study. The isolates were identified as Pectobacterium carotovorum subsp. brasiliense (Pcb) and P. aroidearum (Pa) by morphological characteristics, biochemical and physiological tests, PCR amplification using Pcb-specific primers, and phylogenetic analysis of the 16S rDNA sequences. Pathogenicity tests on bell pepper seedlings indicated that isolates MPS05 (Pcb) and PF05–3 (Pa) were aggressive, causing plant tissue discoloration, lesions on leaves and stems, plant wilt and death. Inoculation of bell pepper fruit with MPS05 and PF05–3 at different concentrations (105, 106, 107 and 108 CFU/ml) resulted in fruit tissue maceration and complete fruit rot. To our knowledge, this study is the first report of disease caused by P. carotovorum subsp. brasiliense on pepper in the United States and the first report of P. aroidearum causing disease on pepper in the world.
- Published
- 2019
20. Molecular Characterization of Laboratory Mutants of Fusarium oxysporum f. sp. niveum Resistant to Prothioconazole, a Demethylation Inhibitor (DMI) Fungicide
- Author
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Sumyya Waliullah, Emran Ali, Pingsheng Ji, and Owen Hudson
- Subjects
Microbiology (medical) ,QH301-705.5 ,Mutant ,Mutagenesis (molecular biology technique) ,prothioconazole ,Plant Science ,Biology ,DMI fungicide ,biology.organism_classification ,Fusarium wilt ,Microbiology ,fungicide resistance ,Fungicide ,Fusarium oxysporum niveum ,Fusarium oxysporum ,gene expression ,Biology (General) ,Pathogen ,Gene ,Ecology, Evolution, Behavior and Systematics ,Fusarium wilt of watermelon ,mutagenesis ,Demethylation - Abstract
Fusarium oxysporum f. sp. niveum (FON) is the causal agent of Fusarium wilt in watermelon, an international growth-limiting pathogen of watermelon cultivation. A single demethylation inhibitor (DMI) fungicide, prothioconazole, is registered to control this pathogen, so the risk of resistance arising in the field is high. To determine and predict the mechanism by which FON could develop resistance to prothioconazole, FON isolates were mutagenized using UV irradiation and subsequent fungicide exposure to create artificially resistant mutants. Isolates were then put into three groups based on the EC50 values: sensitive, intermediately resistant, and highly resistant. The mean EC50 values were 4.98 µg/mL for the sensitive, 31.77 µg/mL for the intermediately resistant, and 108.33 µg/mL for the highly resistant isolates. Isolates were then sequenced and analyzed for differences in both the coding and promoter regions. Two mutations were found that conferred amino acid changes in the target gene, CYP51A, in both intermediately and highly resistant mutants. An expression analysis for the gene CYP51A also showed a significant increase in the expression of the highly resistant mutants compared to the sensitive controls. In this study, we were able to identify two potential mechanisms of resistance to the DMI fungicide prothioconazole in FON isolates: gene overexpression and multiple point mutations. This research should expedite growers’ and researchers’ ability to detect and manage fungicide-resistant phytopathogens.
- Published
- 2021
- Full Text
- View/download PDF
21. Metabolomics and microbiome reveal impacts of rhizosphere metabolites on alfalfa continuous cropping
- Author
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W. Y. Jiang, Jinxin Liu, Yonggang Li, Pingsheng Ji, and Ruiting Wang
- Subjects
Rhizosphere ,Metabolomics ,biology ,Agronomy ,Microbial population biology ,Seedling ,Microorganism ,fungi ,Root rot ,food and beverages ,Autotoxicity ,Beneficial organism ,biology.organism_classification - Abstract
Alfalfa long-term continuous cropping (CC) can pose a serious threat to alfalfa production. However, the mechanism of alfalfa CC obstacle is unclear as of today. In this study, we determined physic-chemical property, microbial population structure, and metabolite differences of alfalfa rhizosphere soils with CC for 1, 7, and 14-years based on analysis of metabolomics and microbiomics. Shifts of functional microorganisms in rhizosphere soil were analyzed, key metabolites and their effects on alfalfa seeds, seedlings and root rot pathogens were assessed. Based on anlysis, p-coumaric acid and ferulic acid on alfalfa seed and seedling growth and root rot pathogens were basically consistent with the influence of CC obstacles in the field. With the increase of CC years, the microbial community in soils changed from fungal to bacterial, and beneficial microorganisms decreased with the increase of CC years, which echoed the performance of alfalfa CC obstacles. The autotoxicity of p-coumaric acid was the strongest.This study fully proved that the continuous accumulation of autotoxic substances in alfalfa rhizosphere was the key factor causing alfalfa CC obstacles.
- Published
- 2021
22. Development of a Rapid Sporulation Method of
- Author
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Xue, Zhang, Chunjie, Li, Baiyan, Xue, Pingsheng, Ji, Yonggang, Li, Lei, Sun, and Shuang, Wang
- Subjects
Microbiological Techniques ,Fusarium ,Spores, Fungal ,Zea mays ,Plant Diseases - Published
- 2021
23. Population structure and genetic diversity of Setosphaeria turcica from corn in Heilongjiang province, China
- Author
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Q.F. Zhang, L.P. Sun, Yonggang Li, W.Y. Jiang, H.Y. Pan, Emran Ali, and Pingsheng Ji
- Subjects
China ,Mating type ,Veterinary medicine ,Genes, Fungal ,Population structure ,Biology ,Zea mays ,Applied Microbiology and Biotechnology ,Analysis of molecular variance ,03 medical and health sciences ,Race (biology) ,Ascomycota ,Cluster Analysis ,Plant Diseases ,030304 developmental biology ,0303 health sciences ,Genetic diversity ,Setosphaeria turcica ,030306 microbiology ,Genetic Variation ,food and beverages ,General Medicine ,Genes, Mating Type, Fungal ,biology.organism_classification ,Turcica ,Microsatellite ,Microsatellite Repeats ,Biotechnology - Abstract
Aim The aims of this study were to identify races and mating types of Setosphaeria turcica causing northern corn leaf blight in Heilongjiang province of China and analyse the genetic diversity of S. turcica isolates using SSR markers. Methods and results Based on gene-for-gene interactions, 13 races of S. turcica (races 0, 1, 2, 3, 12, 13, 23, 123, N, 1N, 12N, 3N and 23N) were isolated from infected corn plants in Heilongjiang province. Races 0 and 1 were the predominant races, and race 23N was identified for the first time in the region. Using two pairs of specific primers, three mating types, 'a', 'Aa' and 'A', were identified, with 'a' being the predominant mating type. SSR markers were used to analyse genetic diversity of 60 S. turcica isolates. Five SSR primers were polymorphic, which resulted in 45 reproducible bands with 2-15 bands for each primer. Cluster analysis separated the isolates into five groups at a similarity coefficient of 0·84. Analysis of molecular variance showed that there was significant correlation between SSR groups and mating type of the isolates. No significant correlation was found between SSR groups and physiological races or geographical location of the isolates. Conclusions The work reported that races 0 and 1 were the predominant races, and race 23N was identified for the first time in Heilongjiang province with 'a' being the predominant mating type. There was significant correlation between SSR groups and mating type of S. turcica isolates. Significance and impact of the study Our results provide information on population structure and genetic diversity of S. turcica causing Northern corn leaf blight, which will facilitate the development of effective disease management programs.
- Published
- 2019
24. Quantitative polymerase chain reaction (Q-PCR) and fluorescent in situ hybridization (FISH) detection of soilborne pathogen Sclerotium rolfsii
- Author
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Michael Sabula, Pingsheng Ji, Tiehang Wu, and Holli Milner
- Subjects
0106 biological sciences ,Sclerotium ,Ecology ,Soil test ,biology ,Inoculation ,Soil Science ,04 agricultural and veterinary sciences ,biology.organism_classification ,01 natural sciences ,Agricultural and Biological Sciences (miscellaneous) ,DNA extraction ,Horticulture ,Real-time polymerase chain reaction ,Disease management (agriculture) ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Blight ,Pathogen ,010606 plant biology & botany - Abstract
Early detection of soilborne disease is essential for prediction of disease development and successful disease management. Traditional methods of monitoring soilborne diseases based on plant growth and symptoms did not take into account the presence and inoculum potential of pathogens in the soil, which generally delay the prevention of diseases. To detect and quantify soil populations of Sclerotium rolfsii, the causal agent of southern blight of tomatoes, quantitative polymerase chain reaction (Q-PCR) was used to measure the amount of soil general fungal and specific S. rolfsii DNA. Significantly higher amounts of total fungal and S. rolfsii DNA were detected in inoculated than in uninoculated soil in a greenhouse inoculation experiment. Fluorescent in situ hybridization (FISH) was successfully developed to detect the abundance of S. rolfsii through whole cell hybridization and was further applied for visual detection of the abundance of S. rolfsii in the soil samples of greenhouse inoculation experiment. Natural abundance of S. rolfsii in soil with a DNA amount of 0.06 pg µl−1 DNA extraction, which was equivalent to 8 pg g−1 soil, was successfully detected. The hybridization signal detected in soil for S. rolfsii had a great correlation with the amount of infested DNA levels of S. rolfsii. Molecular detection and quantification of soilborne pathogens in plant roots and in the soil could provide valuable information to predict disease development and apply management practices for soilborne diseases.
- Published
- 2019
25. Managing Fusarium Wilt of Watermelon with Delayed Transplanting and Cultivar Resistance
- Author
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Anthony P. Keinath, Pingsheng Ji, Timothy Coolong, and Justin D Lanier
- Subjects
0106 biological sciences ,0301 basic medicine ,Fusarium ,Georgia ,South Carolina ,Sowing ,Plant Science ,030108 mycology & parasitology ,Biology ,biology.organism_classification ,01 natural sciences ,Fusarium wilt ,Citrullus ,03 medical and health sciences ,Horticulture ,Fusarium oxysporum ,Transplanting ,Cultivar ,Agronomy and Crop Science ,Tifton ,Plant Diseases ,010606 plant biology & botany - Abstract
Fusarium wilt of watermelon caused by Fusarium oxysporum f. sp. niveum is a serious, widespread disease of watermelon throughout the southern United States. To investigate whether soil temperature affects disease development, three cultivars of triploid watermelon were transplanted March 17 to 21, April 7 to 11, and April 26 to May 2 in 2015 and 2016 at Charleston, SC, and Tifton, GA into fields naturally infested with F. oxysporum f. sp. niveum. Incidence of Fusarium wilt was lower with late-season than with early and midseason transplanting in all four experiments (P ≤ 0.01). Cultivar Citation had more wilted plants than the cultivars Fascination and Melody in three of four experiments (P ≤ 0.05). In South Carolina, planting date did not affect weight and number of marketable fruit ≥4.5 kg apiece. In Georgia in 2016, weight and number of marketable fruit were greater with late transplanting than with early and midseason transplanting. In both states, yield and value for Fascination and Melody were higher than for Citation. Soil temperature averaged over the 4-week period after transplanting was negatively correlated with disease incidence for all four experiments (r = –0.737, P = 0.006). Transplanting after mid-April and choosing a cultivar with resistance to F. oxysporum f. sp. niveum race 1, like Fascination, or tolerance, like Melody, can help manage Fusarium wilt of watermelon and increase marketable yields in the southern United States.
- Published
- 2019
26. Marker Development for Differentiation of Fusarium Oxysporum f. sp. Niveum Race 3 from Races 1 and 2
- Author
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Sumyya Waliullah, Anthony P. Keinath, James C. Fulton, Owen Hudson, Nicholas S. Dufault, Pingsheng Ji, and Emran Ali
- Subjects
0106 biological sciences ,0301 basic medicine ,polymerase chain reaction ,Virulence ,comparative genomics ,01 natural sciences ,Catalysis ,law.invention ,Inorganic Chemistry ,lcsh:Chemistry ,03 medical and health sciences ,race differentiation ,law ,Fusarium oxysporum ,Physical and Theoretical Chemistry ,Molecular Biology ,lcsh:QH301-705.5 ,Spectroscopy ,Polymerase chain reaction ,Comparative genomics ,Genetics ,biology ,Organic Chemistry ,watermelon ,Chromosome ,food and beverages ,General Medicine ,biology.organism_classification ,Fusarium wilt ,Computer Science Applications ,genomic DNA ,030104 developmental biology ,lcsh:Biology (General) ,lcsh:QD1-999 ,Primer (molecular biology) ,Fusarium oxysporum f. sp. niveum ,010606 plant biology & botany - Abstract
Fusarium wilt of watermelon, caused by Fusarium oxysporum f. sp. niveum (FON), is pathogenic only to watermelon and has become one of the main limiting factors in watermelon production internationally. Detection methods for this pathogen are limited, with few published molecular assays available to differentiate FON from other formae speciales of F. oxysporum. FON has four known races that vary in virulence but are difficult and costly to differentiate using traditional inoculation methods and only race 2 can be differentiated molecularly. In this study, genomic and chromosomal comparisons facilitated the development of a conventional polymerase chain reaction (PCR) assay that could differentiate race 3 from races 1 and 2, and by using two other published PCR markers in unison with the new marker, the three races could be differentiated. The new PCR marker, FNR3-F/FNR3-R, amplified a 511 bp region on the &ldquo, pathogenicity chromosome&rdquo, of the FON genome that is absent in race 3. FNR3-F/FNR3-R detected genomic DNA down to 2.0 pg/µ, L. This marker, along with two previously published FON markers, was successfully applied to test over 160 pathogenic FON isolates from Florida, Georgia, and South Carolina. Together, these three FON primer sets worked well for differentiating races 1, 2, and 3 of FON. For each marker, a greater proportion (60 to 90%) of molecular results agreed with the traditional bioassay method of race differentiation compared to those that did not. The new PCR marker should be useful to differentiate FON races and improve Fusarium wilt research.
- Published
- 2021
27. Draft genome sequence of Phomopsis longicolla isolate MSPL 10-6
- Author
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Shuxian Li, Omar Darwish, Nadim Alkharouf, Benjamin Matthews, Pingsheng Ji, Leslie L. Domier, Ning Zhang, and Burton H. Bluhm
- Subjects
Draft genome ,Phomopsis longicolla ,Phomopsis seed decay ,Sequences ,Soybean pathogen ,Genetics ,QH426-470 - Abstract
Phomopsis longicolla is the primary cause of Phomopsis seed decay in soybean. This disease severely affects soybean seed quality by reducing seed viability and oil content, altering seed composition, and increasing frequencies of moldy and/or split beans. It is one of the most economically important soybean diseases. Here, we report the de novo assembled draft genome sequence of the P. longicolla isolate MSPL10-6, which was isolated from field-grown soybean seed in Mississippi, USA. This study represents the first reported genome sequence of a seedborne fungal pathogen in the Diaporthe–Phomopsis complex. The P. longicolla genome sequence will enable research into the genetic basis of fungal infection of soybean seed and provide information for the study of soybean–fungal interactions. The genome sequence will also be valuable for molecular genetic marker development, manipulation of pathogenicity-related genes and development of new control strategies for this pathogen.
- Published
- 2015
- Full Text
- View/download PDF
28. Marker Development for Differentiation of
- Author
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Owen, Hudson, Sumyya, Waliullah, James C, Fulton, Pingsheng, Ji, Nicholas S, Dufault, Anthony, Keinath, and Md Emran, Ali
- Subjects
Base Sequence ,Virulence ,polymerase chain reaction ,watermelon ,food and beverages ,comparative genomics ,Article ,Citrullus ,race differentiation ,Fusarium ,Species Specificity ,Host-Pathogen Interactions ,Genome, Fungal ,DNA, Fungal ,Biomarkers ,Fusarium oxysporum f. sp. niveum ,Plant Diseases - Abstract
Fusarium wilt of watermelon, caused by Fusarium oxysporum f. sp. niveum (FON), is pathogenic only to watermelon and has become one of the main limiting factors in watermelon production internationally. Detection methods for this pathogen are limited, with few published molecular assays available to differentiate FON from other formae speciales of F. oxysporum. FON has four known races that vary in virulence but are difficult and costly to differentiate using traditional inoculation methods and only race 2 can be differentiated molecularly. In this study, genomic and chromosomal comparisons facilitated the development of a conventional polymerase chain reaction (PCR) assay that could differentiate race 3 from races 1 and 2, and by using two other published PCR markers in unison with the new marker, the three races could be differentiated. The new PCR marker, FNR3-F/FNR3-R, amplified a 511 bp region on the “pathogenicity chromosome” of the FON genome that is absent in race 3. FNR3-F/FNR3-R detected genomic DNA down to 2.0 pg/µL. This marker, along with two previously published FON markers, was successfully applied to test over 160 pathogenic FON isolates from Florida, Georgia, and South Carolina. Together, these three FON primer sets worked well for differentiating races 1, 2, and 3 of FON. For each marker, a greater proportion (60 to 90%) of molecular results agreed with the traditional bioassay method of race differentiation compared to those that did not. The new PCR marker should be useful to differentiate FON races and improve Fusarium wilt research.
- Published
- 2020
29. Fitness and Competitive Ability of Field Isolates of
- Author
-
Li, Wang and Pingsheng, Ji
- Subjects
Phytophthora ,Georgia ,Benzamides ,Plant Diseases - Abstract
Phytophthora blight, caused by
- Published
- 2020
30. Phylogenetic and phenotypic characterization of Fusarium oxysporum f. sp. niveum isolates from Florida-grown watermelon
- Author
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Mathews L. Paret, B. Sajeewa Amaradasa, James C. Fulton, Md. Emran Ali, Fanny Iriarte, Nicholas S. Dufault, Owen Hudson, Tatiana Sanchez, Tülin Sarigül Ertek, and Pingsheng Ji
- Subjects
Heredity ,Pathology and Laboratory Medicine ,Geographical locations ,Fusarium ,Medicine and Health Sciences ,Clade ,Data Management ,Genetics ,Fungal Pathogens ,education.field_of_study ,Multidisciplinary ,biology ,Phylogenetic tree ,Geography ,food and beverages ,Phylogenetic Analysis ,Fusarium wilt ,Housekeeping gene ,Phylogenetics ,Phylogeography ,Genetic Mapping ,Biogeography ,Medical Microbiology ,Florida ,Medicine ,Pathogens ,Research Article ,Computer and Information Sciences ,Citrullus lanatus ,Sequence analysis ,Science ,Population ,Mycology ,Microbiology ,Citrullus ,Fusarium oxysporum ,Animals ,Evolutionary Systematics ,Fusarium Oxysporum ,education ,Microbial Pathogens ,Plant Diseases ,Taxonomy ,Evolutionary Biology ,Population Biology ,Ecology and Environmental Sciences ,Biology and Life Sciences ,biology.organism_classification ,United States ,Mycoses ,Haplotypes ,Genetic Loci ,North America ,Earth Sciences ,People and places ,Population Genetics - Abstract
Fusarium wilt of watermelon (Citrullus lanatus) caused by Fusarium oxysporum f. sp. niveum (Fon), has become an increasing concern of farmers in the southeastern USA, especially in Florida. Management of this disease, most often through the use of resistant cultivars and crop rotation, requires an accurate understanding of an area’s pathogen population structure and phenotypic characteristics. This study improved the understanding of the state’s pathogen population by completing multilocus sequence analysis (MLSA) of two housekeeping genes (BT and TEF) and two loci (ITS and IGS), aggressiveness and race-determining bioassays on 72 isolates collected between 2011 and 2015 from major watermelon production areas in North, Central, and South Florida. Multilocus sequence analysis (MLSA) failed to group race 3 isolates into a single large clade; moreover, clade membership was not apparently correlated with aggressiveness (which varied both within and between clades), and only slightly with sampling location. The failure of multilocus sequence analysis using four highly conserved housekeeping genes and loci to clearly group and delineate known Fon races provides justification for future whole genome sequencing efforts whose more robust genomic comparisons will provide higher resolution of intra-species genetic distinctions. Consequently, these results suggest that identification of Fon isolates by race determination alone may fail to detect economically important phenotypic characteristics such as aggressiveness leading to inaccurate risk assessment.
- Published
- 2020
31. Draft Genome Sequences of Three Fusarium oxysporum f. sp. niveum Isolates Used in Designing Markers for Race Differentiation
- Author
-
Dylan Hudson, Pingsheng Ji, Owen Hudson, and M. Emran Ali
- Subjects
0106 biological sciences ,0301 basic medicine ,Genetics ,Genome Sequences ,food and beverages ,Biology ,biology.organism_classification ,01 natural sciences ,Genome ,03 medical and health sciences ,Race (biology) ,030104 developmental biology ,Immunology and Microbiology (miscellaneous) ,Fusarium oxysporum ,Bioassay ,Molecular Biology ,010606 plant biology & botany - Abstract
Here, we report the draft genome sequences of three Fusarium oxysporum f. sp. niveum isolates that were used to design markers for molecular race differentiation. The isolates were collected from watermelon fields in Georgia (USA) and were determined to be different races of F. oxysporum f. sp. niveum using a traditional bioassay.
- Published
- 2020
32. Identification of a biocontrol agent Bacillus vallismortis BV23 and assessment of effects of its metabolites on Fusarium graminearum causing corn stalk rot
- Author
-
Baiwen Jiang, Hongyu Pan, Ruiting Wang, Pingsheng Ji, Lei Sun, Lingrong Li, Jinxin Liu, Yonggang Li, and Lankun Xu
- Subjects
0106 biological sciences ,Fusarium ,Rhizosphere ,biology ,Biological pest control ,biology.organism_classification ,01 natural sciences ,Bacterial strain ,Bacillus vallismortis ,010602 entomology ,Stalk ,Insect Science ,Botany ,Identification (biology) ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
Corn stalk rot, caused by Fusarium graminearum, is one of the most destructive diseases of maize in many regions of the world. A bacterial strain BV23 was isolated from corn rhizosphere tha...
- Published
- 2018
33. Two novel gene-specific markers at pik locus facilitate the application of rice blast resistant alleles in breeding
- Author
-
Dagang Tian, Ziqiang Chen, Yan Lin, Zaijie Chen, Jiami Luo, Mo Wang, Songbiao Chen, Pingsheng Ji Ji, Liming Yang, Zhonghua Wang, and Feng Wang
- Subjects
food and beverages - Abstract
Background: Rice blast disease, caused by Magnaporthe oryzae, is a major constraint for rice production in the world. Introgression of blast-durable resistance genes into high-yielding rice cultivars has been considered an agricultural priority in an effort to control the disease. The blast resistance Pik locus, located on chromosome 11, contains at least six important resistance genes, but these genes have not been widely employed in resistance breeding since existing markers hardly satisfy current breeding needs owing to their limited scope of application.Results: In the present study, two PCR-based markers, Pikp-Del and Pi1-In, were developed to target the specific InDel (insertion/deletion) of the Pik-p and Pi-1 genes, respectively. The two markers precisely distinguished Pik-p, Pi-1, and the K-type alleles at the Pik locus, which is a necessary element for functional genes from rice varieties. Conclusions:Two gene-specific markers of Pi-kp and Pi1 identified that only several old varieties contain the two genes, nearly half these varieties yet carry the K-type alleles. Therefore, these identified varieties can be new gene sources for developing blast resistant rice. The two newly developed markers should be highly useful for using Pi-kp, Pi1 and other resistance genes at the Pik locus in marker-assisted selection (MAS) breeding programs.
- Published
- 2019
34. Deciphering drought‐induced metabolic responses and regulation in developing maize kernels
- Author
-
Pingsheng Ji, Jake C. Fountain, Robert C. Kemerait, Robert D. Lee, Li-Ming Yang, Baozhu Guo, Xinzhi Ni, and Sixue Chen
- Subjects
0106 biological sciences ,0301 basic medicine ,Aflatoxin ,Drought tolerance ,Plant Science ,Biology ,Plant disease resistance ,maize ,medicine.disease_cause ,01 natural sciences ,03 medical and health sciences ,Metabolomics ,parasitic diseases ,medicine ,Research Articles ,Phenylpropanoid ,drought stress ,fungi ,aflatoxin ,food and beverages ,metabolomics ,Horticulture ,Metabolic pathway ,030104 developmental biology ,biochemical pathways ,Preharvest ,Agronomy and Crop Science ,Oxidative stress ,Research Article ,010606 plant biology & botany ,Biotechnology - Abstract
Summary Drought stress conditions decrease maize growth and yield, and aggravate preharvest aflatoxin contamination. While several studies have been performed on mature kernels responding to drought stress, the metabolic profiles of developing kernels are not as well characterized, particularly in germplasm with contrasting resistance to both drought and mycotoxin contamination. Here, following screening for drought tolerance, a drought‐sensitive line, B73, and a drought‐tolerant line, Lo964, were selected and stressed beginning at 14 days after pollination. Developing kernels were sampled 7 and 14 days after drought induction (DAI) from both stressed and irrigated plants. Comparative biochemical and metabolomic analyses profiled 409 differentially accumulated metabolites. Multivariate statistics and pathway analyses showed that drought stress induced an accumulation of simple sugars and polyunsaturated fatty acids and a decrease in amines, polyamines and dipeptides in B73. Conversely, sphingolipid, sterol, phenylpropanoid and dipeptide metabolites accumulated in Lo964 under drought stress. Drought stress also resulted in the greater accumulation of reactive oxygen species (ROS) and aflatoxin in kernels of B73 in comparison with Lo964 implying a correlation in their production. Overall, field drought treatments disordered a cascade of normal metabolic programming during development of maize kernels and subsequently caused oxidative stress. The glutathione and urea cycles along with the metabolism of carbohydrates and lipids for osmoprotection, membrane maintenance and antioxidant protection were central among the drought stress responses observed in developing kernels. These results also provide novel targets to enhance host drought tolerance and disease resistance through the use of biotechnologies such as transgenics and genome editing.
- Published
- 2018
35. Two novel bacterial biosensors for detection of nitrate availability in the rhizosphere
- Author
-
DeAngelis, Kristen M., Pingsheng Ji, Firestone, Mary K., and Lindow, Steven E.
- Subjects
Rhizosphere -- Research ,Biosensors -- Usage ,Soils -- Nitrogen content ,Soils -- Research ,Biological sciences - Abstract
The development of two whole-cell bacterial reporters to detect the availability of nitrate in soil around roots that is based on Enterobacter cloacae harboring nitrate-responsive reporter genes is reported. The results indicate that both green fluorescent protein (GFP) and inaZ whole-cell biosensors are highly responsive and that the population-level estimates of nitrate availability provided by the ice nucleation-based biosensors are complementary to the estimates of nitrate availability at the single-cell level provided by the GFP-based biosensor.
- Published
- 2005
36. Two novel gene-specific markers at pik locus facilitate the application of rice blast resistant alleles in breeding
- Author
-
Tian, Dagang, primary, Chen, Ziqiang, additional, Lin, Yan, additional, Chen, Zaijie, additional, Luo, Jiami, additional, Wang, Mo, additional, Chen, Songbiao, additional, Ji, Pingsheng Ji, additional, Yang, Liming, additional, Wang, Zhonghua, additional, and Wang, Feng, additional
- Published
- 2019
- Full Text
- View/download PDF
37. Sensitivity of Fusarium oxysporum f. sp. niveum to Prothioconazole and Thiophanate-Methyl and Gene Mutation Conferring Resistance to Thiophanate-Methyl
- Author
-
Katherine L. Stevenson, James W. Buck, Aparna Petkar, Pingsheng Ji, and David B. Langston
- Subjects
0106 biological sciences ,0301 basic medicine ,biology ,food and beverages ,Plant Science ,Fungus ,Gene mutation ,biology.organism_classification ,01 natural sciences ,Fusarium wilt ,Microbiology ,Fungicide ,03 medical and health sciences ,030104 developmental biology ,Germination ,Fusarium oxysporum ,Spore germination ,Agronomy and Crop Science ,Mycelium ,010606 plant biology & botany - Abstract
Fusarium wilt, incited by the fungus Fusarium oxysporum f. sp. niveum, is a soilborne disease that affects watermelon production worldwide. Approaches for effective management of Fusarium wilt in watermelon are limited. Studies conducted in recent years indicated that prothioconazole and thiophanate-methyl reduced the disease significantly under field conditions. However, effects of the fungicides on different life stages of F. oxysporum f. sp. niveum and potential existence of fungicide resistance in F. oxysporum f. sp. niveum populations are unknown. In the present study, effects of prothioconazole and thiophanate-methyl on mycelium growth and spore germination of F. oxysporum f. sp. niveum isolates collected in watermelon fields in Georgia were determined. In vitro mycelium growth studies indicated that all 100 isolates evaluated were sensitive to prothioconazole; the effective concentration that suppressed mycelium growth by 50% ranged from 0.75 to 5.69 μg/ml (averaged 1.62 μg/ml). In contrast, 33 and 4% of the isolates were resistant to thiophanate-methyl at 10 and 100 μg/ml, respectively. Microconidial germination assays showed that 36 and 64% of the isolates tested were sensitive or intermediately sensitive to prothioconazole at 100 μg/ml but the fungicide did not inhibit spore germination at 10 μg/ml. Sequencing a portion of the β-tubulin gene of eight isolates resistant or sensitive to thiophanate-methyl indicated that fungicide resistance was associated with a point mutation at nucleotide position 200, resulting in a substitution of phenylalanine by tyrosine. This is the first report of isolates of F. oxysporum resistant to thiophanate-methyl. Results of the research suggest that prothioconazole may be a viable option for management of Fusarium wilt of watermelon whereas thiophanate-methyl should be used judiciously due to the existence of isolates resistant to the fungicide.
- Published
- 2017
38. Fungicide Rotation Programs for Managing Phytophthora Fruit Rot of Watermelon in Southeastern United States
- Author
-
Daniel S. Egel, Pingsheng Ji, Chandrasekar S. Kousik, and Lina M. Quesada-Ocampo
- Subjects
0106 biological sciences ,Fungicide ,010602 entomology ,Horticulture ,Plant Science ,Phytophthora ,Biology ,Fruit rot ,biology.organism_classification ,01 natural sciences ,010606 plant biology & botany - Abstract
About 50% of the watermelons in the United States are produced in the southeastern states, where optimal conditions for development of Phytophthora fruit rot prevail. Phytophthora fruit rot significantly limits watermelon production by causing serious yield losses before and after fruit harvest. Efficacy of fungicide rotation programs and Melcast-scheduled sprays for managing Phytophthora fruit rot was determined by conducting experiments in Phytophthora capsici-infested fields at three locations in southeastern United States (North Carolina, South Carolina, and Georgia). The mini seedless cultivar Wonder and seeded cultivar Mickey Lee (pollenizer) were used. Five weekly applications of fungicides were made at all locations. Significant fruit rot (53 to 91%, mean 68%) was observed in the nontreated control plots in all three years (2013 to 2015) and across locations. All fungicide rotation programs significantly reduced Phytophthora fruit rot compared with nontreated controls. Overall, the rotation of Zampro alternated with Orondis was highly effective across three locations and two years. Rotations of Actigard followed by Ranman+Ridomil Gold, Presidio, V-10208, and Orondis, or rotation of Revus alternated with Presidio were similarly effective. Use of Melcast, a melon disease-forecasting tool, may occasionally enable savings of one spray application without significantly impacting control. Although many fungicides are available for use in rotations, under very heavy rain and pathogen pressure, the fungicides alone may not offer adequate protection; therefore, an integrated approach should be used with other management options including well-drained fields.
- Published
- 2017
39. Effects of sophorolipids on fungal and oomycete pathogens in relation to pH solubility
- Author
-
Pingsheng Ji, Jing Chen, Yuning Feng, Shengmi Fu, Runa Wang, Xinli Liu, and Zaiyong An
- Subjects
Fusarium ,Spores ,Hypha ,Hyphal tip ,Oleic Acids ,Applied Microbiology and Biotechnology ,03 medical and health sciences ,Spore germination ,Mycelium ,030304 developmental biology ,Plant Diseases ,Solanum tuberosum ,Oomycete ,0303 health sciences ,biology ,030306 microbiology ,Chemistry ,fungi ,Fungi ,food and beverages ,General Medicine ,Hydrogen-Ion Concentration ,biology.organism_classification ,Pythium ultimum ,Horticulture ,Oomycetes ,Solubility ,Phytophthora infestans ,Biotechnology - Abstract
Aims The objective of this study was to determine the effects of sophorolipids on several fungal and oomycete plant pathogens and the relationship between sophorolipids at different pH and antimicrobial activities. Methods and results Sophorolipids had different solubility at different pH with a dramatic increase in solubility when pH was 6 or higher. Inhibition of mycelial growth of Phytophthora infestans by sophorolipids was affected by pH values, showing that when the pH value was higher, the inhibition rate was lower. Sophorolipids inhibited spore germination and mycelial growth of several fungal and oomycete pathogens in vitro including Fusarium sp., F. oxysporum, F. concentricum, Pythium ultimum, Pyricularia oryzae, Rhizoctorzia solani, Alternaria kikuchiana, Gaeumannomyces graminis var. tritici and P. infestans and caused morphological changes in hyphae by microscope observation. Sophorolipids reduced β-1,3-glucanase activity in mycelia of P. infestans. In greenhouse studies, foliar application of sophorolipids at 3 mg ml-1 reduced severity of late blight of potato caused by P. infestans significantly. Conclusion Sophorolipids influenced spore germination and hyphal tip growth of several plant pathogens and pH solubility of sophorolipids had an effect on their efficacy. Application of sophorolipids reduced late blight disease on potato under greenhouse conditions. Significance and impact of the study The findings indicated that sophorolipids have the potential to be developed as a convenient and easy-to-use formulation for managing plant diseases.
- Published
- 2019
40. Maternal Stress Reduces the Susceptibility of Root-Knot Nematodes to
- Author
-
Chang Liu, Pingsheng Ji, and Patricia Timper
- Subjects
0106 biological sciences ,Veterinary medicine ,Offspring ,010607 zoology ,Biological pest control ,medicine.disease_cause ,01 natural sciences ,Endospore ,Transgenerational immune priming ,medicine ,Meloidogyne arenaria ,lcsh:QH301-705.5 ,biology ,fungi ,Arts & Humanities ,Pasteuria ramosa ,Life Sciences ,biology.organism_classification ,Obligate parasite ,Spore ,Crowding ,Nematode ,lcsh:Biology (General) ,Biological control ,Host-parasite interactions ,010606 plant biology & botany - Abstract
Pasteuria penetrans is an obligate parasite of root-knot nematodes (Meloidogyne spp.). Endospores of P. penetrans attach to the cuticle of second-stage juveniles (J2) and complete their life cycle within the nematode female body. Infected females will be filled with spores and will be sterilized. Studies with Daphnia magna and its parasite Pasteuria ramosa showed that a poor maternal environment can lead to offspring resistant to P. ramosa. Therefore, we hypothesized that Meloidogyne arenaria females raised under a stressed environment would produce offspring that were more resistant to P. penetrans. Females were exposed to a stressed environment created by crowding and low-food supply, or a non-stressed environment and their offspring evaluated for endospore attachment and infection by P. penetrans. No difference in spore attachment was observed between the two treatments. However, infection rate of P. penetrans in the stressed treatment was significantly lower than that in the non-stressed treatment (8 vs 18%). Mothers raised under stressed conditions appeared to produce more resistant offspring than did mothers raised under favorable conditions. Under stressful conditions, M. arenaria mothers may provide their progeny with enhanced survival traits. In the field, when nematode populations are not managed, they often reach the carrying capacity of their host plant by the end of the season. This study suggests that the next generation of inoculum may be more resistant to infection by P. penetrans.
- Published
- 2019
41. Population Structure and Genetic Diversity of Phytophthora nicotianae from Tobacco in Georgia
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Yonggang Li, Hongliang Wang, Karen R. Harris-Shultz, Pingsheng Ji, and Phillip A. Wadl
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0106 biological sciences ,0301 basic medicine ,Genetic diversity ,Veterinary medicine ,Mating type ,biology ,food and beverages ,Plant Science ,Phytophthora nicotianae ,biology.organism_classification ,01 natural sciences ,Fungicide ,03 medical and health sciences ,Race (biology) ,030104 developmental biology ,Disease management (agriculture) ,Botany ,Cultivar ,Agronomy and Crop Science ,Pathogen ,010606 plant biology & botany - Abstract
Black shank, caused by Phytophthora nicotianae, occurs worldwide and is responsible for significant yield loss in tobacco production in Georgia. Management of the disease has primarily relied on utilization of tobacco cultivars with resistance to race 0 of the pathogen and application of the fungicide mefenoxam. Races of P. nicotianae currently prevalent in tobacco production in Georgia, their sensitivity to mefenoxam, and genetic diversity of the pathogen are largely unknown. To determine population structure and genetic diversity of the pathogen, simple sequence repeat (SSR) markers were used. Three races of P. nicotianae (races 0, 1, and 3) were isolated from infected tobacco plants, with race 3 identified in Georgia for the first time. The majority of isolates were identified as A2 mating type and all isolates were sensitive or intermediately sensitive to mefenoxam at 1 or 10 μg/ml, with effective concentration of mefenoxam for 50% mycelial growth reduction values ranging from
- Published
- 2019
42. Translocation of Oxathiapiprolin in Bell Pepper Plants and Systemic Protection of Plants Against Phytophthora Blight
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Timothy L. Grey, Tianli Qu, Pingsheng Ji, and Alex S. Csinos
- Subjects
0106 biological sciences ,food.ingredient ,biology ,Hydroculture ,Chromosomal translocation ,Plant Science ,biology.organism_classification ,01 natural sciences ,Fungicide ,010602 entomology ,Phytophthora capsici ,food ,Agronomy ,Pepper ,Blight ,Phytophthora ,Agronomy and Crop Science ,Cotyledon ,010606 plant biology & botany - Abstract
Production of bell pepper is seriously affected by Phytophthora capsici, the causal agent of Phytophthora blight. Limited approaches are available for effective management of the disease. Oxathiapiprolin is a fungicide recently registered in the United States that suppressed P. capsici and reduced Phytophthora blight on bell pepper significantly in our previous studies. It is unknown whether oxathiapiprolin translocates in bell pepper plants systemically after application. Experiments were conducted to determine uptake of oxathiapiprolin by bell pepper plants and its systemic movement in the plant. Quantification of oxathiapiprolin in plant tissues was conducted by high-performance liquid chromatography (HPLC) that detected the compound sensitively and selectively. Percentage of recovery of oxathiapiprolin from plant tissues was calculated by comparing the quantities in plant tissues determined by HPLC with known quantities of the compound added to the plant tissues. Recovery rates of oxathiapiprolin from pepper plant tissues ranged from 87.0 to 119.3%. When oxathiapiprolin was applied to roots of bell pepper plants grown in hydroculture, the compound was detected in the root within 4 h and in the cotyledon, first true leaf, and second true leaf within 8 h. It was detectable in the top new leaf 48 h after application to the root. In greenhouse studies with bell pepper plants grown in pots, oxathiapiprolin was applied as a soil drench at 100 and 400 μg/ml. The compound was detected in the root within 3 days and in the stem and first true leaf within 6 days when applied at 100 μg/ml. It was detected in the root, stem, first true leaf, and top new leaf within 3 days when applied at 400 μg/ml. Phytophthora blight on pepper foliage was significantly reduced when oxathiapiprolin was applied as a soil drench at 100 or 400 μg/ml under greenhouse conditions. This is the first report indicating systemic movement of oxathiapiprolin in pepper plants that provides useful information for designing fungicide application programs for effective management of the disease.
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- 2019
43. Biological control of Fusarium wilt on watermelon by fluorescent pseudomonads
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Pingsheng Ji, Gia Khuong Hoang Hua, Li Wang, and Jing Chen
- Subjects
0106 biological sciences ,010602 entomology ,Horticulture ,biology ,Insect Science ,Fusarium oxysporum ,Biological pest control ,food and beverages ,biology.organism_classification ,01 natural sciences ,Agronomy and Crop Science ,Fusarium wilt ,010606 plant biology & botany - Abstract
Fusarium wilt caused by Fusarium oxysporum f. sp. niveum (FON) is a destructive soilborne disease commonly found in watermelon producing areas throughout the world. At present, the control of Fusarium wilt depends heavily on host resistance and chemical fungicide application. In this study, we isolated fluorescent pseudomonads from the rhizosphere of healthy watermelon and evaluated their biocontrol capacity against FON race 2. Biochemical assays indicated that all 14 fluorescent Pseudomonas strains were able to produce indole-3-acetic acid and at least one type of biosurfactants. Both sulphur oxidising and proteolytic activities were exhibited in 2 of the 14 strains. However, none of them could synthesise phenazine antibiotics. Seven strains with different morphological and biochemical characteristics were identified by sequencing the rpoB gene. Among those, one was Pseudomonas resinovorans (WMT16-1-1), two were P. putida (WMC16-1-1 and WMC16-2-5), one was P. fluorescens (WMC16-1-8) and others were Pseudomonas sp. In vitro studies indicated that WMC16-1-1, WMC16-1-8 and WMC16-2-5 inhibited mycelial growth of FON significantly. Detection of biosynthetic loci of 2,4-diacetylphloroglucinol (DAPG), pyrrolnitrin and pyoluteorin using specific primers indicated that the three strains could not produce the antibiotics. In greenhouse studies, WMC16-1-1, WMC16-1-8 and WMC16-2-5 reduced the severity of Fusarium wilt significantly with WMC16-1-1 being the most effective. Inoculation with WMC16-2-5 resulted in the significantly greater weight of both stems and roots compared to the nontreated control, while WMC16-1-1 resulted in greater stem weight. Pseudomonas strains WMC16-1-1, WMC16-1-8 and WMC16-2-5 are potential candidates for controlling Fusarium wilt and promoting the growth of watermelon.
- Published
- 2019
- Full Text
- View/download PDF
44. Meloidogyne incognita intensifies the severity of Fusarium wilt on watermelon caused by Fusarium oxysporum f. sp. niveum
- Author
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Gia Khuong Hoang Hua, Pingsheng Ji, and Patricia Timper
- Subjects
0106 biological sciences ,biology ,Inoculation ,food and beverages ,Plant Science ,Plant disease resistance ,biology.organism_classification ,01 natural sciences ,Fusarium wilt ,Plant development ,Horticulture ,Fusarium oxysporum ,Meloidogyne incognita ,Root-knot nematode ,Cultivar ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
Fusarium wilt of watermelon, caused by Fusarium oxysporum f. sp. niveum (FON), is a devastating soil-borne disease in watermelon production. Race 1 and race 2 of the pathogen are widely distributed in different watermelon producing regions. To investigate whether the root-knot nematodes break resistance of watermelon genotypes with resistance to FON race 1 and race 2, four greenhouse experiments were conducted on two watermelon cultivars ‘Calhoun Gray’ and ‘Fascination’ that are resistant to race 1, and an accession PI 296 341-FR that is resistant to race 2. The treatments included seedlings of ‘Calhoun Gray’ and ‘Fascination’ inoculated with Meloidogyne incognita (1000 J2/plant) or FON race 1 alone, nematodes 5 days before FON, FON 5 days before nematodes, nematodes and FON simultaneously, and non-inoculated control. PI 296 341-FR was inoculated with FON race 2, with or without M. incognita inoculation. The presence of M. incognita enhanced the susceptibility of all watermelon genotypes to Fusarium wilt. Co-inoculation with M. incognita led to an early development of wilt symptoms and increased disease severity. Galls were observed on roots of all nematode-inoculated plants, and sequential inoculation of FON followed by nematodes resulted in numerically lower galling indices compared with other inoculation methods. Whereas inoculation of the nematodes alone did not reduce plant growth, growth suppression was evident when seedlings were inoculated with both pathogens. The results indicated that M. incognita could enhance susceptibility of resistant watermelon genotypes to respective FON races, and host resistance alone is not sufficient for managing Fusarium wilt on watermelon in soils infested with root-knot nematodes.
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- 2019
- Full Text
- View/download PDF
45. Pre-harvest treatment for reduction of foodborne pathogens and microbial load on tomatoes
- Author
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Govindaraj Dev Kumar, Tong Zhao, and Pingsheng Ji
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Salmonella ,Inoculation ,fungi ,010401 analytical chemistry ,food and beverages ,04 agricultural and veterinary sciences ,Contamination ,medicine.disease_cause ,040401 food science ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,0404 agricultural biotechnology ,chemistry ,Listeria monocytogenes ,Levulinic acid ,medicine ,Food science ,Sodium dodecyl sulfate ,Escherichia coli ,Food Science ,Biotechnology - Abstract
A new bactericide comprised of two chemicals, levulinic acid and sodium dodecyl sulfate (SDS), was evaluated for its efficacy on tomatoes to reduce contamination by foodborne pathogens at pre-harvest stage. Two approaches, one as prevention and the other as the treatment, were compared on Salmonella, Shiga toxin-producing Escherichia coli (STEC), and Listeria monocytogenes contaminated tomato plants. Results obtained from inoculation studies on tomato plants confirmed that this bactericide reduced the count of Salmonella, STEC, and L. monocytogenes populations substantially (P
- Published
- 2021
46. Sensitivity of Phytophthora nicotianae From Tobacco to Fluopicolide, Mandipropamid, and Oxathiapiprolin
- Author
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Alex S. Csinos, Yuanyuan Shao, Tianli Qu, and Pingsheng Ji
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0106 biological sciences ,biology ,business.industry ,Oxathiapiprolin ,Plant Science ,Phytophthora nicotianae ,biology.organism_classification ,01 natural sciences ,Biotechnology ,Fungicide ,Agar plate ,010602 entomology ,chemistry.chemical_compound ,Horticulture ,chemistry ,Fluopicolide ,business ,Agronomy and Crop Science ,Mycelium ,010606 plant biology & botany ,Field conditions ,EC50 - Abstract
Black shank incited by Phytophthora nicotianae is a devastating disease in the production of tobacco. Fungicides have been commonly used for managing the disease; however, there is only a narrow pool of effective fungicides. A few new fungicides became available in recent years, including fluopicolide, mandipropamid, and oxathiapiprolin, which reduced diseases incited by oomycetes under field conditions. Limited information is available regarding sensitivity of P. nicotianae isolates to these new fungicides. Research was conducted to determine effects of the three new fungicides on P. nicotianae isolates from tobacco in Georgia. Studies with 106 isolates indicated that they did not grow when agar medium was amended with the fungicides at the rate of 1 μg/ml. Twenty isolates were used for in vitro studies to determine sensitivity to the fungicides. Fluopicolide, mandipropamid, and oxathiapiprolin inhibited mycelial growth of the isolates with mean EC50 values (effective concentrations that provide 50% growth reduction) of 0.09, 0.04, and 0.001 μg/ml, respectively. EC50 values of fluopicolide, mandipropamid, and oxathiapiprolin for inhibiting sporangial formation were 0.15, 0.03, and 0.0002 μg/ml, respectively. EC50 values for suppressing zoospore germination averaged 0.16, 0.04, and 0.002 μg/ml for fluopicolide, mandipropamid, and oxathiapiprolin, respectively. Results from the study indicated that P. nicotianae isolates from tobacco in Georgia were sensitive to the fungicides, with lower EC50 for oxathiapiprolin than for fluopicolide and mandipropamid. The information on effectiveness and baseline sensitivity of fungicides on P. nicotianae will facilitate monitoring of resistance development in the pathogen population.
- Published
- 2016
47. Lack of influence of Meloidogyne incognita on resistance of bell pepper cultivars to Phytophthora capsici
- Author
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Venkatesan Parkunan, Pingsheng Ji, and Patricia Timper
- Subjects
0106 biological sciences ,0301 basic medicine ,biology ,Inoculation ,fungi ,food and beverages ,Plant Science ,biology.organism_classification ,01 natural sciences ,03 medical and health sciences ,Horticulture ,030104 developmental biology ,Phytophthora capsici ,Agronomy ,Pepper ,Meloidogyne incognita ,Blight ,Root-knot nematode ,Phytophthora ,Agronomy and Crop Science ,Terra incognita ,010606 plant biology & botany - Abstract
The root-knot nematode, Meloidogyne incognita, and the Phytophthora blight pathogen, Phytophthora capsici, cause root diseases in bell pepper under field conditions. However, limited information is available about the interactions between these two pathogens on different bell pepper cultivars. Greenhouse experiments were conducted on cultivars of bell pepper with different levels of resistance to P. capsici (‘Aristotle’, ‘Paladin’ and ‘Intruder’), by concomitant and sequential inoculation of both pathogens. The treatments included inoculating both pathogens simultaneously into the root zone, inoculating M. incognita 7 days before P. capsici, inoculating P. capsici 7 days before M. incognita, inoculating M. incognita or P. capsici alone, and an untreated control without any pathogens. In ‘Aristotle’ and ‘Intruder’, P. capsici inoculation with M. incognita simultaneously or 7 days before or after M. incognita reduced gall index significantly as compared with M. incognita alone. In ‘Paladin’, P. caps...
- Published
- 2016
48. Isolation and evaluation of aBacillus methylotrophicusstrain for control of corn stalk rot
- Author
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Chunqing Pan, Pingsheng Ji, Yonggang Li, Shi Wei, and Xiaobing Geng
- Subjects
0106 biological sciences ,Fusarium ,biology ,Strain (chemistry) ,digestive, oral, and skin physiology ,Biological pest control ,food and beverages ,biology.organism_classification ,Isolation (microbiology) ,complex mixtures ,01 natural sciences ,Bacillus methylotrophicus ,010602 entomology ,Horticulture ,Agronomy ,Stalk ,Bacterial isolate ,Insect Science ,Agronomy and Crop Science ,Bacteria ,010606 plant biology & botany - Abstract
Bacteria were isolated from corn plants and efficacy of a selected isolate for control of corn stalk rot caused by Fusarium graminearum was evaluated. The bacterial isolate provided the greatest suppression of F. graminearum in lab studies and reduced corn stalk rot significantly in 2013 and 2014 field experiments.
- Published
- 2016
49. Assessment of antifungal activities of a biocontrol bacterium BA17 for managing postharvest gray mold of green bean caused by Botrytis cinerea
- Author
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Pingsheng Ji, Yanbo Liang, Yanan Cai, Yonggang Li, and Lankun Xu
- Subjects
Preservative ,Bacillus amyloliquefaciens ,biology ,Chemistry ,food and beverages ,Horticulture ,biology.organism_classification ,Spore ,Fungicide ,Postharvest ,Spore germination ,Agronomy and Crop Science ,Mycelium ,Food Science ,Botrytis cinerea - Abstract
Gray mold incited by Botrytis cinerea is one of the most important postharvest fungal diseases of green bean that causes significant loss in the production, processing, storage, and transportation of green bean worldwide. Management of the disease relies on chemical fungicides that have detrimental effects on the environment and human health. In this study, a bacterial strain BA17, identified as Bacillus amyloliquefaciens, exhibited strong antifungal effect against B. cinerea. Filtrate of BA17 liquid culture, when applied at 1 %, 5 % and 10 %, reduced spore germination, spore production and mycelial growth of B. cinerea significantly. Mycelium treated by BA17 filtrate appeared swelling and dehydrated malformation, protoplasm aggregation, and mitochondria became bigger and more numerous with defective cell walls. Assessment of activities of intrasporic and extrasporic antagonistic substances of BA17 indicated that active substances were primarily produced outside the bacterial cell. The active substances produced by BA17 were sensitive to heat, had optimum efficacy at pH 8.0, and were relatively resistant to ultraviolet irradiation. Inhibitory effect of BA17 was not different significantly when stored at 4 or 25 °C for 120 d. BA17 filtrate, when applied at 10 %, reduced gray mold on green bean by more than 90 % in repeated experiments. It also provided significant preservative effects on green bean by reducing decay rate and rust spots and maintaining better hardness and color. The biocontrol agent BA17 has great potential for control of postharvest gray mold on green bean and improvement of green bean quality in practical production.
- Published
- 2020
50. Antibacterial Activities of Sophorolipids and Nisin and Their Combination against Foodborne Pathogen Staphylococcus aureus
- Author
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Zaiyong An, Pingsheng Ji, Jing Chen, Zhifei Lü, and Xinli Liu
- Subjects
Preservative ,030309 nutrition & dietetics ,medicine.disease_cause ,Industrial and Manufacturing Engineering ,Cell wall ,03 medical and health sciences ,chemistry.chemical_compound ,0404 agricultural biotechnology ,polycyclic compounds ,medicine ,Extracellular ,Food science ,Pathogen ,Nisin ,0303 health sciences ,integumentary system ,biology ,Lactococcus lactis ,food and beverages ,04 agricultural and veterinary sciences ,General Chemistry ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,040401 food science ,chemistry ,Staphylococcus aureus ,bacteria ,Antibacterial activity ,Food Science ,Biotechnology - Abstract
In food processing, both preservatives and surfactants are usually added to ensure the quality of food. Sophorolipids (SLs) are extracellular biosurfactants produced by yeasts that have antibacterial activities. Nisin is a polycyclic antibacterial peptide produced by Lactococcus lactis. In this study, the possibility of using SLs alone as a preservative and in combination with nisin as a compound additive is investigated. SLs and nisin exhibit effective antibacterial activities against foodborne pathogen Staphylococcus aureus with minimum inhibitory concentrations of 32 and 0.5 µg mL⁻¹, respectively. Both SLs and nisin increase cell wall and cell membrane permeability of S. aureus, enhance intracellular content release and activities of extracellular ALP and β‐galactosidase, and reduce respiratory‐chain dehydrogenase activity of the pathogen. Fractional inhibitory concentration (FIC) index for SLs and nisin combination is 1.5, indicating the effect of SLs with nisin is additive. Results of the study indicate that SLs could be used alone as a preservative or in combination with nisin as a promising compound additive with functions of both emulsifier and preservative. Practical Applications: SLs could be used alone as a preservative in food industry or in combination with nisin as a promising compound additive with functions of both emulsifier and preservative.
- Published
- 2019
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