237 results on '"James A. Strother"'
Search Results
2. Profile of Director James M. Strother Senior Executive Vice President, General Counsel of Wells Fargo & Company
- Subjects
Wells Fargo & Co. -- Officials and employees ,Banking industry -- Officials and employees ,Banking industry ,General interest ,News, opinion and commentary - Abstract
San Francisco, California: Following is the Profile of Director James M. Strother Senior Executive Vice President, General Counsel of Wells Fargo & Company:Jim Strother became executive vice president and General [...]
- Published
- 2016
3. Review: The Hole in the Fabric: Science, Contemporary Literature, and Henry James., by Strother B. Purdy
- Author
-
Banta, Martha
- Published
- 1978
- Full Text
- View/download PDF
4. Recording central nervous system responses of freely-swimming marine and freshwater fishes with a customizable, implantable AC differential amplifier
- Author
-
Brendan J. Gibbs, James A. Strother, and James C. Liao
- Subjects
General Neuroscience - Published
- 2023
- Full Text
- View/download PDF
5. Anion efflux mediates transduction in hair cells of zebrafish lateral line
- Author
-
Elias T. Lunsford, Yuriy V. Bobkov, Brandon C. Ray, James C. Liao, and James A. Strother
- Abstract
Hair cells are the principal sensory receptors of the vertebrate auditory system, and transduce sounds with mechanically-gated ion channels that permit cations to flow from the surrounding endolymph into the cells. The lateral line of zebrafish has served as a key model system for understanding hair cell physiology and development, and it has often been speculated that these hair cells employ a similar transduction mechanism. In this study, we demonstrate that the hair cells are exposed to an unregulated external environment with cation concentrations that are too low to support transduction. Instead, our results indicate that hair cell excitation is mediated by a fundamentally different mechanism involving the outward flow of anions.
- Published
- 2022
- Full Text
- View/download PDF
6. Surprisingly simple mechanical behavior of a complex embryonic tissue.
- Author
-
Michelangelo von Dassow, James A Strother, and Lance A Davidson
- Subjects
Medicine ,Science - Abstract
Previous studies suggest that mechanical feedback could coordinate morphogenetic events in embryos. Furthermore, embryonic tissues have complex structure and composition and undergo large deformations during morphogenesis. Hence we expect highly non-linear and loading-rate dependent tissue mechanical properties in embryos.We used micro-aspiration to test whether a simple linear viscoelastic model was sufficient to describe the mechanical behavior of gastrula stage Xenopus laevis embryonic tissue in vivo. We tested whether these embryonic tissues change their mechanical properties in response to mechanical stimuli but found no evidence of changes in the viscoelastic properties of the tissue in response to stress or stress application rate. We used this model to test hypotheses about the pattern of force generation during electrically induced tissue contractions. The dependence of contractions on suction pressure was most consistent with apical tension, and was inconsistent with isotropic contraction. Finally, stiffer clutches generated stronger contractions, suggesting that force generation and stiffness may be coupled in the embryo.The mechanical behavior of a complex, active embryonic tissue can be surprisingly well described by a simple linear viscoelastic model with power law creep compliance, even at high deformations. We found no evidence of mechanical feedback in this system. Together these results show that very simple mechanical models can be useful in describing embryo mechanics.
- Published
- 2010
- Full Text
- View/download PDF
7. Prolonged exposure to stressors suppresses exploratory behavior in zebrafish larvae
- Author
-
William A. Haney, Bushra Moussaoui, and James A. Strother
- Subjects
Physiology ,ved/biology.organism_classification_rank.species ,Hindbrain ,Aquatic Science ,03 medical and health sciences ,0302 clinical medicine ,Calcium imaging ,Biological neural network ,Animals ,Model organism ,Molecular Biology ,Zebrafish ,Swimming ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,0303 health sciences ,Behavior, Animal ,biology ,ved/biology ,Stressor ,Area postrema ,Dopaminergic ,biology.organism_classification ,Larva ,Insect Science ,Exploratory Behavior ,Animal Science and Zoology ,Neuroscience ,Locomotion ,psychological phenomena and processes ,030217 neurology & neurosurgery - Abstract
Environmental stressors induce rapid physiological and behavioral shifts in vertebrate animals. However, the neurobiological mechanisms responsible for stress-induced changes in behavior are complex and not well understood. Similar to mammalian vertebrates, zebrafish adults display a preference for dark environments that is associated with predator avoidance, enhanced by stressors, and broadly used in assays for anxiety-like behavior. Although the larvae of zebrafish are a prominent model organism for understanding neural circuits, fewer studies have examined the effects of stressors on their behavior. This study examines the effects of noxious chemical and electric shock stressors on locomotion and light preference in zebrafish larvae. We found that both stressors elicited similar changes in behavior. Acute exposure induced increased swimming activity, while prolonged exposure depressed activity. Neither stressor produced a consistent shift in light/dark preference, but prolonged exposure to these stressors resulted in a pronounced decrease in exploration of different visual environments. We also examined the effects of exposure to a noxious chemical cue using whole-brain calcium imaging, and identified neural correlates in the area postrema, an area of the hindbrain containing noradrenergic and dopaminergic neurons. Pharmaceutical blockade experiments showed that ɑ-adrenergic receptors contribute to the behavioral response to an acute stressor but are not necessary for the response to a prolonged stressor. These results indicate that zebrafish larvae have complex behavioral responses to stressors comparable to those of adult animals, and also suggest that these responses are mediated by similar neural pathways.
- Published
- 2020
- Full Text
- View/download PDF
8. Biological evaluation of molecules of the azaBINOL class as antiviral agents: Inhibition of HIV-1 RNase H activity by 7-isopropoxy-8-(naphth-1-yl)quinoline
- Author
-
Ross D. Overacker, Selena Milicevic Sephton, Paul R. Blakemore, George F. Neuhaus, Sandra Loesgen, Ruth Brack-Werner, Somdev Banerjee, James A. Strother, and Alexander M. Herrmann
- Subjects
Azabinol ,Hiv-1 Inhibition ,Hiv Reverse Transcriptase ,Rnase H ,Anti-HIV Agents ,medicine.medical_treatment ,Clinical Biochemistry ,Ribonuclease H ,Pharmaceutical Science ,01 natural sciences ,Biochemistry ,Drug Discovery ,medicine ,Humans ,RNase H ,Cytotoxicity ,Molecular Biology ,Polymerase ,chemistry.chemical_classification ,Protease ,biology ,Reverse-transcriptase inhibitor ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Reverse transcriptase ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Enzyme ,Viral replication ,biology.protein ,HIV-1 ,Quinolines ,Molecular Medicine ,medicine.drug - Abstract
Inspired by bioactive biaryl-containing natural products found in plants and the marine environment, a series of synthetic compounds belonging to the azaBINOL chiral ligand family was evaluated for antiviral activity against HIV-1. Testing of 39 unique azaBINOLs and two BINOLs in a single-round infectivity assay resulted in the identification of three promising antiviral compounds, including 7-isopropoxy-8-(naphth-1-yl) quinoline (azaBINOL B#24), which exhibited low-micromolar activity without associated cytotoxicity. The active compounds and several close structural analogues were further tested against three different HIV-1 envelope pseudotyped viruses as well as in a full-virus replication system (EASY-HIT). The in vitro studies indicated that azaBINOL B#24 acts on early stages of viral replication before viral assembly and budding. Next we explored B#24's activity against HIV-1 reverse transcriptase (RT) and individually tested for polymerase and RNase H activity. The azaBINOL B#24 inhibits RNase H activity and binds directly to the HIV-1 RT enzyme. Additionally, we observe additive inhibitory activity against pseudotyped viruses when B#24 is dosed in competition with the clinically used non-nucleoside reverse transcriptase inhibitor (NNRTI) efavirenz. When tested against a multidrug resistant HIV-1 isolate with drug resistance associated mutations in regions encoding for HIV-1 RT and protease, B#24 only exhibits a 5.1-fold net decrease in IC50 value, while efavirenz' activity decreases by 7.6-fold. These results indicate that azaBINOL B#24 is a potentially viable, novel lead for the development of new HIV-1 RNase H inhibitors. Furthermore, this study demonstrates that the survey of libraries of synthetic compounds, designed purely with the goal of facilitating chemical synthesis in mind, may yield unexpected and selective drug leads for the development of new antiviral agents.
- Published
- 2019
9. Reduction of spherical and chromatic aberration in axial-scanning optical systems with tunable lenses
- Author
-
James A. Strother
- Subjects
0303 health sciences ,Microscope ,Materials science ,business.industry ,Physics::Optics ,Magnification ,Coma (optics) ,Translation (geometry) ,01 natural sciences ,Article ,Atomic and Molecular Physics, and Optics ,law.invention ,Numerical aperture ,010309 optics ,Lens (optics) ,03 medical and health sciences ,Optics ,law ,0103 physical sciences ,Chromatic aberration ,Reduction (mathematics) ,business ,030304 developmental biology ,Biotechnology - Abstract
Optical systems with integrated tunable lenses allow for rapid axial-scanning without mechanical translation of the components. However, changing the power of the tunable lens typically upsets aberration balancing across the system, introducing spherical and chromatic aberrations that limit the usable axial range. This study develops an analytical approximation for the tuning-induced spherical and axial chromatic aberration of a general optical system containing a tunable lens element. The resulting model indicates that systems can be simultaneously corrected for both tuning-induced spherical and chromatic aberrations by controlling the lateral magnification, coma, and pupil lateral color prior to the tunable surface. These insights are then used to design a realizable axial-scanning microscope system with a high numerical aperture and diffraction-limited performance over a wide field of view and deep axial range.
- Published
- 2021
- Full Text
- View/download PDF
10. Searching for Jimmie Strother : A Tale of Music, Murder, and Memory
- Author
-
KIMBALL, GREGG D., FLEMONS, DOM, FOREWORD BY, KIMBALL, GREGG D., and FLEMONS, DOM
- Published
- 2025
11. Biological Evaluation of Molecules of the azaBINOL Class as Antiviral Agents: Specific Inhibition of HIV-1 RNase H Activity by 7-Isopropoxy-8-(naphth-1-yl)quinoline
- Author
-
James A. Strother, Sandra Loesgen, Paul R. Blakemore, Somdev Banerjee, Alexander M. Herrmann, George F. Neuhaus, Ross D. Overacker, Ruth Brack-Werner, and Selena Milicevic Sephton
- Subjects
Infectivity ,chemistry.chemical_compound ,biology ,Biochemistry ,Chemistry ,Viral entry ,Chiral ligand ,Quinoline ,biology.protein ,RNase H ,Chemical synthesis ,Polymerase ,Reverse transcriptase - Abstract
Inspired by bioactive biaryl-containing natural products found in plants and the marine environment, a series of synthetic compounds belonging to the azaBINOL chiral ligand family was evaluated for antiviral activity against HIV-1. Testing of 39 unique azaBINOLs in a singleround infectivity assay resulted in the identification of three promising antiviral compounds, including 7-isopropoxy-8-(naphth-1-yl)quinoline (azaBINOLB#24), which exhibited low-micromolar activity. The active compounds and several close structural analogues were further tested against three different HIV-1 envelope pseudotyped viruses as well as in a full-virus replication system (EASY-HIT). Mode-of-action studies using a time-of-addition assay indicated that azaBINOLB#24acts after viral entry but before viral assembly and budding. HIV-1 reverse transcriptase (RT) assays that individually test for polymerase and RNase H activity were used to demonstrate thatB#24inhibits RNase H activity, most likely allosterically. Further binding analysis using bio-layer interferometry (BLI) showed thatB#24interacts with HIV-1 RT in a highly specific manner. These results indicate that azaBINOLB#24is a potentially viable, novel lead for the development of new HIV-1 RNase H inhibitors. Furthermore, this study demonstrates that the survey of libraries of synthetic compounds, designed purely with the goal of facilitating chemical synthesis in mind, may yield unexpected and selective drug leads for the development of new antiviral agents.
- Published
- 2019
- Full Text
- View/download PDF
12. Manta rays feed using ricochet separation, a novel nonclogging filtration mechanism
- Author
-
E. W. Misty Paig-Tran, Raj V. Divi, and James A. Strother
- Subjects
0106 biological sciences ,Materials science ,Computational fluid dynamics ,010603 evolutionary biology ,01 natural sciences ,010305 fluids & plasmas ,law.invention ,Clogging ,Sieve ,law ,0103 physical sciences ,Fluid dynamics ,Animals ,Skates, Fish ,Cyclonic separation ,Filtration ,Multidisciplinary ,business.industry ,Computational Biology ,HYDROSOL ,Feeding Behavior ,Mechanics ,Hydrodynamics ,Ricochet ,business - Abstract
Solid-liquid filtration is a ubiquitous process found in industrial and biological systems. Although implementations vary widely, almost all filtration systems are based on a small set of fundamental separation mechanisms, including sieve, cross-flow, hydrosol, and cyclonic separation. Anatomical studies showed that manta rays have a highly specialized filter-feeding apparatus that does not resemble previously described filtration systems. We examined the fluid flow around the manta filter-feeding apparatus using a combination of physical modeling and computational fluid dynamics. Our results indicate that manta rays use a unique solid-fluid separation mechanism in which direct interception of particles with wing-like structures causes particles to "ricochet" away from the filter pores. This filtration mechanism separates particles smaller than the pore size, allows high flow rates, and resists clogging.
- Published
- 2018
- Full Text
- View/download PDF
13. Behavioral state modulates the ON visual motion pathway of
- Author
-
James A, Strother, Shiuan-Tze, Wu, Edward M, Rogers, Jessica L M, Eliason, Allan M, Wong, Aljoscha, Nern, and Michael B, Reiser
- Subjects
Neurons ,Behavior, Animal ,PNAS Plus ,motion vision ,fungi ,Animals ,Drosophila ,Motor Activity ,Biological Sciences ,Octopamine ,Neuroscience ,behavioral-state modulation - Abstract
Significance Animal visual systems are typically thought of by analogy to cameras—sensory systems providing continuous information streams that are processed through fixed algorithms. However, studies in flies and mice have shown that visual neurons are dynamically and adaptively retuned by the behavioral state of the animal. In Drosophila, prominent higher-order neurons in the visual system respond more strongly to fast-moving stimuli once the animal starts walking or flying. In this study, we systematically investigated the neurobiological mechanism governing the behavioral-state modulation of directionally selective neurons in Drosophila. We show that behavioral activity modifies the physiological properties of critical neurons in this visual motion circuit and that neuromodulation by central feedback neurons recapitulates these effects., The behavioral state of an animal can dynamically modulate visual processing. In flies, the behavioral state is known to alter the temporal tuning of neurons that carry visual motion information into the central brain. However, where this modulation occurs and how it tunes the properties of this neural circuit are not well understood. Here, we show that the behavioral state alters the baseline activity levels and the temporal tuning of the first directionally selective neuron in the ON motion pathway (T4) as well as its primary input neurons (Mi1, Tm3, Mi4, Mi9). These effects are especially prominent in the inhibitory neuron Mi4, and we show that central octopaminergic neurons provide input to Mi4 and increase its excitability. We further show that octopamine neurons are required for sustained behavioral responses to fast-moving, but not slow-moving, visual stimuli in walking flies. These results indicate that behavioral-state modulation acts directly on the inputs to the directionally selective neurons and supports efficient neural coding of motion stimuli.
- Published
- 2017
14. Behavioral state modulates the ON visual motion pathway of Drosophila
- Author
-
Aljoscha Nern, Michael B. Reiser, Shiuan-Tze Wu, Jessica Eliason, Allan M. Wong, Edward M. Rogers, and James A. Strother
- Subjects
0301 basic medicine ,Multidisciplinary ,Visual perception ,biology ,Behavioral state ,biology.organism_classification ,Visual motion ,Visual processing ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,medicine ,Octopamine (neurotransmitter) ,Neuron ,Neural coding ,Neuroscience ,Drosophila ,030217 neurology & neurosurgery - Abstract
The behavioral state of an animal can dynamically modulate visual processing. In flies, the behavioral state is known to alter the temporal tuning of neurons that carry visual motion information into the central brain. However, where this modulation occurs and how it tunes the properties of this neural circuit are not well understood. Here, we show that the behavioral state alters the baseline activity levels and the temporal tuning of the first directionally selective neuron in the ON motion pathway (T4) as well as its primary input neurons (Mi1, Tm3, Mi4, Mi9). These effects are especially prominent in the inhibitory neuron Mi4, and we show that central octopaminergic neurons provide input to Mi4 and increase its excitability. We further show that octopamine neurons are required for sustained behavioral responses to fast-moving, but not slow-moving, visual stimuli in walking flies. These results indicate that behavioral-state modulation acts directly on the inputs to the directionally selective neurons and supports efficient neural coding of motion stimuli.
- Published
- 2017
- Full Text
- View/download PDF
15. Direct Observation of ON and OFF Pathways in the Drosophila Visual System
- Author
-
James A. Strother, Michael B. Reiser, and Aljoscha Nern
- Subjects
Connectomics ,Visual perception ,Motion Perception ,Tropomyosin ,Biology ,Visual system ,Models, Biological ,General Biochemistry, Genetics and Molecular Biology ,Models of neural computation ,Calcium imaging ,Neuropil ,medicine ,Animals ,Drosophila Proteins ,Visual Pathways ,Motion perception ,Vision, Ocular ,Medulla ,Principal Component Analysis ,Agricultural and Biological Sciences(all) ,Behavior, Animal ,Biochemistry, Genetics and Molecular Biology(all) ,Nuclear Proteins ,Anatomy ,Lamins ,Drosophila melanogaster ,medicine.anatomical_structure ,Calcium ,Photoreceptor Cells, Invertebrate ,General Agricultural and Biological Sciences ,Neuroscience ,Photic Stimulation - Abstract
SummaryVisual motion perception is critical to many animal behaviors, and flies have emerged as a powerful model system for exploring this fundamental neural computation. Although numerous studies have suggested that fly motion vision is governed by a simple neural circuit [1–3], the implementation of this circuit has remained mysterious for decades. Connectomics and neurogenetics have produced a surge in recent progress, and several studies have shown selectivity for light increments (ON) or decrements (OFF) in key elements associated with this circuit [4–7]. However, related studies have reached disparate conclusions about where this selectivity emerges and whether it plays a major role in motion vision [8–13]. To address these questions, we examined activity in the neuropil thought to be responsible for visual motion detection, the medulla, of Drosophila melanogaster in response to a range of visual stimuli using two-photon calcium imaging. We confirmed that the input neurons of the medulla, the LMCs, are not responsible for light-on and light-off selectivity. We then examined the pan-neural response of medulla neurons and found prominent selectivity for light-on and light-off in layers of the medulla associated with two anatomically derived pathways (L1/L2 associated) [14, 15]. We next examined the activity of prominent interneurons within each pathway (Mi1 and Tm1) and found that these neurons have corresponding selectivity for light-on or light-off. These results provide direct evidence that motion is computed in parallel light-on and light-off pathways, demonstrate that this selectivity emerges in neurons immediately downstream of the LMCs, and specify where crucial elements of motion computation occur.
- Published
- 2014
- Full Text
- View/download PDF
16. A computational model of flow between the microscale respiratory structures of fish gills
- Author
-
James A. Strother
- Subjects
Gills ,Statistics and Probability ,Gill ,animal structures ,Morphology (linguistics) ,Flow (psychology) ,Biology ,Models, Biological ,Permeability ,General Biochemistry, Genetics and Molecular Biology ,Species Specificity ,Animals ,Lamellar structure ,Respiratory system ,Microscale chemistry ,General Immunology and Microbiology ,Applied Mathematics ,Fishes ,General Medicine ,Anatomy ,Flow pattern ,Modeling and Simulation ,Hydrodynamics ,Respiratory Physiological Phenomena ,Biophysics ,Hydrodynamic resistance ,General Agricultural and Biological Sciences - Abstract
The gills of most teleost fishes are covered by plate-like structures, the secondary lamellae, that provide the bulk of the respiratory surface area. Water passing over the secondary lamellae exchanges gases with blood passing through the secondary lamellae, forming a system that has served as a classic model of counter-current exchange. In this study, a computational model of flow around the secondary lamellae is used to examine the hydrodynamic consequences of changes to the lamellar morphology. Consistent with previous studies, the interlamellar distance is found to strongly affect the hydrodynamic resistance of the gills. However, the presence of a small gap between the tips of the secondary lamellae is found to have a similarly strong effect on the hydrodynamic resistance and flow patterns within the gills. The results from this model have been generally formulated, allowing the calculation of the hydrodynamic resistance for measured morphometric parameters. These results provide a new basis for comparing theoretical predictions of the gill resistance with measured values, and provide a general model for examining the diversity gill morphologies observed in teleost fishes.
- Published
- 2013
- Full Text
- View/download PDF
17. Hydrodynamic resistance and flow patterns in the gills of a tilapine fish
- Author
-
James A. Strother
- Subjects
Gills ,Gill ,endocrine system ,Oreochromis mossambicus ,animal structures ,food.ingredient ,Physiology ,Water flow ,Zoology ,Aquatic Science ,Oxygen Consumption ,food ,Respiration ,Pressure ,Water Movements ,Animals ,Body Weights and Measures ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,biology ,fungi ,Tilapia ,Flow pattern ,biology.organism_classification ,Biomechanical Phenomena ,Fishery ,Insect Science ,Hydrodynamics ,%22">Fish ,Animal Science and Zoology ,Hydrodynamic resistance ,Rheology - Abstract
SUMMARYThe gills of teleost fishes are often discussed as an archetypal counter-current exchange system, capable of supporting the relatively high metabolic rates of some fishes despite the low oxygen solubility of water. Despite an appreciation for the physiology of exchange at the gills, many questions remain regarding the hydrodynamical basis of ventilation in teleost fishes. In this study, the hydrodynamic resistance and flow fields around the isolated gills of a tilapia, Oreochromis mossambicus, were measured as a function of the applied pressure head. At ventilatory pressures typical of a fish at rest, the hydrodynamic resistance of the gills was nearly constant, the flow was laminar, shunting of water around the gills was essentially absent, and the distribution of water flow was relatively uniform. However, at the higher pressures typical of an active or stressed fish, some of these qualities were lost. In particular, at elevated pressures there was a decrease in the hydrodynamic resistance of the gills and substantial shunting of water around the gills. These effects suggest mechanical limits to maximum aerobic performance during activity or under adverse environmental conditions.
- Published
- 2013
- Full Text
- View/download PDF
18. The Emergence of Directional Selectivity in the Visual Motion Pathway of Drosophila
- Author
-
Shiuan-Tze Wu, Gerald M. Rubin, Allan M. Wong, Michael B. Reiser, James A. Strother, Edward M. Rogers, Aljoscha Nern, and Jasmine Q Le
- Subjects
0301 basic medicine ,Neurons ,Medulla Oblongata ,General Neuroscience ,Gene Expression Profiling ,Models, Neurological ,Motion Perception ,Action Potentials ,Motion detection ,Dendrites ,Biology ,Neuron types ,Visual motion ,Animal navigation ,03 medical and health sciences ,030104 developmental biology ,Models of neural computation ,Calcium imaging ,Animals ,Calcium ,Drosophila ,Visual Pathways ,Selectivity ,Neuroscience ,Medulla - Abstract
The perception of visual motion is critical for animal navigation, and flies are a prominent model system for exploring this neural computation. In Drosophila, the T4 cells of the medulla are directionally selective and necessary for ON motion behavioral responses. To examine the emergence of directional selectivity, we developed genetic driver lines for the neuron types with the most synapses onto T4 cells. Using calcium imaging, we found that these neuron types are not directionally selective and that selectivity arises in the T4 dendrites. By silencing each input neuron type, we identified which neurons are necessary for T4 directional selectivity and ON motion behavioral responses. We then determined the sign of the connections between these neurons and T4 cells using neuronal photoactivation. Our results indicate a computational architecture for motion detection that is a hybrid of classic theoretical models.
- Published
- 2016
19. Feeding anatomy, filter-feeding rate, and diet of whale sharks Rhincodon typus during surface ram filter feeding off the Yucatan Peninsula, Mexico
- Author
-
Robert E. Hueter, James A. Strother, Michael Maslanka, Maria Laura Habegger, Jayne M. Gardiner, Leslie D. Zeigler, Philip J. Motta, Kyle Mara, Rafael Parra, John P. Tyminski, Ray L. Davis, and Samantha Mulvany
- Subjects
Yucatan peninsula ,biology ,Whale ,fungi ,Feeding Behavior ,Anatomy ,Whale shark ,Plankton ,Pharyngeal cavity ,biology.organism_classification ,Fish larvae ,Diet ,Fishery ,Filter feeding ,Gadus morhua ,biology.animal ,Sharks ,Animals ,Pharynx ,Animal Science and Zoology ,Open mouth ,Mexico ,human activities ,Swimming - Abstract
The feeding anatomy, behavior and diet of the whale shark Rhincodon typus were studied off Cabo Catoche, Yucatan Peninsula, Mexico. The filtering apparatus is composed of 20 unique filtering pads that completely occlude the pharyngeal cavity. A reticulated mesh lies on the proximal surface of the pads, with openings averaging 1.2mm in diameter. Superficial to this, a series of primary and secondary cartilaginous vanes support the pads and direct the water across the primary gill filaments. During surface ram filter feeding, sharks swam at an average velocity of 1.1m/s with 85% of the open mouth below the water's surface. Sharks on average spent approximately 7.5h/day feeding at the surface on dense plankton dominated by sergestids, calanoid copepods, chaetognaths and fish larvae. Based on calculated flow speed and underwater mouth area, it was estimated that a whale shark of 443 cm total length (TL) filters 326 m(3)/h, and a 622 cm TL shark 614 m(3)/h. With an average plankton biomass of 4.5 g/m(3) at the feeding site, the two sizes of sharks on average would ingest 1467 and 2763 g of plankton per hour, and their daily ration would be approximately 14,931 and 28,121 kJ, respectively. These values are consistent with independently derived feeding rations of captive, growing whale sharks in an aquarium. A feeding mechanism utilizing cross-flow filtration of plankton is described, allowing the sharks to ingest plankton that is smaller than the mesh while reducing clogging of the filtering apparatus.
- Published
- 2010
- Full Text
- View/download PDF
20. Whole-body lift and ground effect during pectoral fin locomotion in the northern spearnose poacher (Agonopsis vulsa)
- Author
-
Elizabeth L. Brainerd, Bryan Nowroozi, Jaquan M. Horton, Adam P. Summers, and James A. Strother
- Subjects
Lift-to-drag ratio ,biology ,Angle of attack ,Body Weight ,Fishes ,Fish fin ,biology.organism_classification ,Poacher ,Biomechanical Phenomena ,Lift (force) ,Flume ,Ground effect (aerodynamics) ,Animals ,Animal Science and Zoology ,Pitch angle ,Ecosystem ,Swimming ,Marine engineering - Abstract
The northern spearnose poacher, Agonopsis vulsa, is a benthic, heavily armored fish that swims primarily using pectoral fins. High-speed kinematics, whole-body lift measurements, and flow visualization were used to study how A. vulsa overcomes substantial negative buoyancy while generating forward thrust. Kinematics for five freely swimming poachers indicate that individuals tend to swim near the bottom (within 1cm) with a consistently small (less than 1 degrees ) pitch angle of the body. When the poachers swam more than 1cm above the bottom, however, body pitch angles were higher and varied inversely with speed, suggesting that lift may help overcome negative buoyancy. To determine the contribution of the body to total lift, fins were removed from euthanized fish (n=3) and the lift and drag from the body were measured in a flume. Lift and drag were found to increase with increasing flow velocity and angle of attack (ANCOVA, p0.0001 for both effects). Lift force from the body was found to supply approximately half of the force necessary to overcome negative buoyancy when the fish were swimming more than 1cm above the bottom. Lastly, flow visualization experiments were performed to examine the mechanism of lift generation for near-bottom swimming. A vortex in the wake of the pectoral fins was observed to interact strongly with the substratum when the animals approached the bottom. These flow patterns suggest that, when swimming within 1cm of the bottom, poachers may use hydrodynamic ground effect to augment lift, thereby counteracting negative buoyancy.
- Published
- 2009
- Full Text
- View/download PDF
21. Mechanical filtering by the boundary layer and fluid–structure interaction in the superficial neuromast of the fish lateral line system
- Author
-
Sietse M. van Netten, Matthew J. McHenry, James A. Strother, and Artificial Intelligence
- Subjects
Sensory Receptor Cells ,hair cells ,Physiology ,Water flow ,FLOW ,Lateral line ,Sensation ,ZEBRAFISH DANIO-RERIO ,Biology ,Mechanotransduction, Cellular ,Models, Biological ,TRANSDUCTION ,biomechanics ,Behavioral Neuroscience ,Biological Clocks ,SENSE-ORGANS ,Fluid–structure interaction ,Pressure ,Water Movements ,medicine ,Animals ,XENOPUS-LAEVIS ,Computer Simulation ,mechanosensation ,Cilia ,Mechanotransduction ,Swimming ,ARTHROPOD FILIFORM HAIRS ,Ecology, Evolution, Behavior and Systematics ,fish ,EXCITATION PATTERNS ,Mechanosensation ,Mechanics ,Anatomy ,Kinocilium ,zebrafish ,VERTEBRATE HAIR-CELLS ,Biomechanical Phenomena ,Lateral Line System ,Boundary layer ,medicine.anatomical_structure ,Larva ,Animal Science and Zoology ,Hair cell ,SAROTHERODON-NILOTICUS L ,RECEPTOR POTENTIALS ,Mechanoreceptors - Abstract
A great diversity of aquatic animals detects water flow with ciliated mechanoreceptors on the body's surface. In order to understand how these receptors mechanically filter signals, we developed a theoretical model of the superficial neuromast in the fish lateral line system. The cupula of the neuromast was modeled as a cylindrical beam that deflects in response to an oscillating flow field. Its accuracy was verified by comparison with prior measurements of cupular deflection in larval zebrafish (Danio rerio). The model predicts that the boundary layer of flow over the body attenuates low-frequency stimuli. The fluid-structure interaction between this flow and the cupula attenuates high-frequency stimuli. The number and height of hair cell kinocilia and the dimensions of the cupular matrix determine the range of intermediate frequencies to which a neuromast is sensitive. By articulating the individual mechanical contributions of the boundary layer and the components of cupular morphology, this model provides the theoretical framework for understanding how a hydrodynamic receptor filters flow signals.
- Published
- 2008
- Full Text
- View/download PDF
22. Extremely fast prey capture in pipefish is powered by elastic recoil
- Author
-
Lara A. Ferry-Graham, Peter Aerts, Brooke E. Flammang, James A. Strother, and Sam Van Wassenbergh
- Subjects
Video Recording ,Biomedical Engineering ,Biophysics ,Bioengineering ,Kinematics ,Rotation ,Biochemistry ,Pipefish ,Predation ,Biomaterials ,Elastic recoil ,Syngnathidae ,Pressure ,Animals ,Muscle, Skeletal ,Mechanical energy ,Mouth ,biology ,Electromyography ,Feeding Behavior ,Mechanics ,Anatomy ,Models, Theoretical ,biology.organism_classification ,Elasticity ,Smegmamorpha ,Biomechanical Phenomena ,Predatory Behavior ,Snout ,Research Article ,Biotechnology - Abstract
The exceptionally high speed at which syngnathid fishes are able to rotate their snout towards prey and capture it by suction is potentially caused by a catapult mechanism in which the energy previously stored in deformed elastic elements is suddenly released. According to this hypothesis, tension is built up in tendons of the post-cranial muscles before prey capture is initiated. Next, an abrupt elastic recoil generates high-speed dorsal rotation of the head and snout, rapidly bringing the mouth close to the prey, thus enabling the pipefish to be close enough to engulf the prey by suction. However, no experimental evidence exists for such a mechanism of mechanical power amplification during feeding in these fishes. To test this hypothesis, inverse dynamical modelling based upon kinematic data from high-speed videos of prey capture in bay pipefishSyngnathus leptorhynchus, as well as electromyography of the muscle responsible for head rotation (the epaxial muscle) was performed. The remarkably high instantaneous muscle-mass-specific power requirement calculated for the initial phase of head rotation (up to 5795 W kg−1), as well as the early onset times of epaxial muscle activity (often observed more than 300 ms before the first externally discernible prey capture motion), support the elastic power enhancement hypothesis.
- Published
- 2007
- Full Text
- View/download PDF
23. Individual-based model of larval transport to coral reefs in turbulent, wave-driven flow: behavioral responses to dissolved settlement inducer
- Author
-
Jeffrey R. Koseff, Matthew A. Reidenbach, M. A. R. Koehl, James A. Strother, and Michael G. Hadfield
- Subjects
geography ,geography.geographical_feature_category ,Ecology ,Porites compressa ,Coral ,fungi ,Coral reef ,Aquatic Science ,Biology ,biology.organism_classification ,Sea slug ,Water column ,Oceanography ,Benthic zone ,Inducer ,human activities ,Reef ,Ecology, Evolution, Behavior and Systematics - Abstract
Larvae of many benthic marine animals set- tle and metamorphose in response to waterborne chem- ical cues. Can the behavioral responses of microscopic larvae in the water column to dissolved chemical cues affect their transport to the substratum in the turbulent, wave-driven flow characteristic of many shallow coastal habitats? We addressed this question using an individ- ual-based model of larvae of the sea slug Phestilla sibo- gae, transported in the oscillatory flow above coral reefs. Larvae of P. sibogae stop swimming and sink in response to a dissolved inducer released by their prey, the coral Porites compressa, and resume swimming when exposed to inducer-free water. The instantaneous fine-scale spa- tial distribution of inducer in the flow above a reef is fila- mentous; hence microscopic larvae swimming or sinking through the water encounter inducer above threshold concentration in on/off temporal patterns. Model results show that using a time-averaged inducer concentration gradient to calculate larval transport rates to the reef overestimates the rates by
- Published
- 2007
- Full Text
- View/download PDF
24. Comparative Study of White and Gray Mineral Trioxide Aggregate (MTA) Simulating a One- or Two-Step Apical Barrier Technique
- Author
-
Gary D. Matt, Scott B. McClanahan, James M. Strother, and Jeffery R. Thorpe
- Subjects
Dental Leakage ,Mineral trioxide aggregate ,Analysis of Variance ,Materials science ,business.industry ,Silicates ,Two step ,Dentistry ,Oxides ,Materials testing ,Calcium Compounds ,Root Canal Filling Materials ,Incisor ,Drug Combinations ,Tooth Apex ,Hardness ,Root Canal Obturation ,Materials Testing ,Humans ,Aluminum Compounds ,business ,General Dentistry ,Open apex ,Biomedical engineering - Abstract
This study investigated the use of Mineral Trioxide Aggregate (MTA) as an apical barrier by comparing the sealing ability and set hardness of white and gray MTA. Forty-four root segments were prepared to simulate an open apex. Apical barriers of white and gray MTA were placed to a thickness of 2 mm or 5 mm. The samples were obturated immediately (one-step) or after the MTA set for 24 h (two-steps). After placement in methylene blue dye for 48 h, the samples were sectioned for leakage analysis and microhardness testing of the barrier. Gray MTA demonstrated significantly less leakage than white MTA (p < 0.001), and the two-step technique showed significantly less leakage than one-step (p < 0.006). The 5-mm thick barrier was significantly harder than the 2 mm barrier, regardless of the type of MTA or number of steps (p < 0.01). Results suggested that a 5 mm apical barrier of gray MTA, using two-steps, provided the best apical barrier.
- Published
- 2004
- Full Text
- View/download PDF
25. A Navigational Primitive: Biorobotic Implementation of Cycloptic Helical Klinotaxis in Planar Motion
- Author
-
Adam C. Lammert, H.C. Crenshaw, James A. Strother, John H. Long, Mathieu Kemp, Charles A. Pell, and Matthew J. McHenry
- Subjects
Engineering ,business.industry ,Mechanical Engineering ,Photoresistor ,Ocean Engineering ,Mobile robot ,Tracking (particle physics) ,Robot control ,law.invention ,Planar ,law ,Trajectory ,Biological neural network ,Robot ,Computer vision ,Artificial intelligence ,Electrical and Electronic Engineering ,business - Abstract
A broad diversity of microorganisms and larval aquatic animals swim along a helical trajectory. Helical movement toward or away from stimuli involves the detection of gradients, alteration of the helical trajectory, and gradient tracking. Using sensory and neural circuitry models from swimming simulations of tadpole-like ascidian larvae (Phylum Chordata, Subphylum Urochordata), we built and tested a single-sensor, surface-swimming, tail-flapping robot that swims up a light gradient and holds station at an orbital around an area of high intensity. We implemented the same neural circuitry in a terrestrial, wheeled robot with a single photoresistor; it exhibited similar navigational behavior. We also mathematically modeled single-sensor robots navigating in plane. The simulated robots showed the importance of sensor placement and excitation field on navigational behavior. When the sensor placement and excitation field of the simulated robot matched that of the embodied robots, navigational behavior was similar. These results 1) tested and supported a proposed neural circuitry model, 2) showed the simplicity and effectiveness of using a single light sensor for navigation, and 3) demonstrated the use of helical motion in two dimensions.
- Published
- 2004
- Full Text
- View/download PDF
26. The hydrodynamics of locomotion at intermediate Reynolds numbers:undulatory swimming in ascidian larvae (Botrylloidessp.)
- Author
-
Matthew J. McHenry, Emanuel Azizi, and James A. Strother
- Subjects
Tail ,Physiology ,Acceleration ,Biophysics ,Thrust ,Aquatic Science ,Models, Biological ,Biophysical Phenomena ,symbols.namesake ,Animals ,Urochordata ,Molecular Biology ,Swimming ,Ecology, Evolution, Behavior and Systematics ,Physics ,biology ,Viscosity ,Dynamics (mechanics) ,Reynolds number ,Mechanics ,biology.organism_classification ,Biomechanical Phenomena ,Swimming speed ,Drag ,Larva ,Insect Science ,Fictitious force ,symbols ,Animal Science and Zoology ,Botrylloides ,Locomotion - Abstract
SUMMARYUnderstanding how the shape and motion of an aquatic animal affects the performance of swimming requires knowledge of the fluid forces that generate thrust and drag. These forces are poorly understood for the large diversity of animals that swim at Reynolds numbers (Re) between 100 and 102. We experimentally tested quasi-steady and unsteady blade-element models of the hydrodynamics of undulatory swimming in the larvae of the ascidian Botrylloides sp. by comparing the forces predicted by these models with measured forces generated by tethered larvae and by comparing the swimming speeds predicted with measurements of the speed of freely swimming larvae. Although both models predicted mean forces that were statistically indistinguishable from measurements, the quasi-steady model predicted the timing of force production and mean swimming speed more accurately than the unsteady model. This suggests that unsteady force (i.e. the acceleration reaction) does not play a role in the dynamics of steady undulatory swimming at Re≈102. We explored the relative contribution of viscous and inertial force to the generation of thrust and drag at 100102) and low (
- Published
- 2003
- Full Text
- View/download PDF
27. The kinematics of phototaxis in larvae of the ascidian Aplidium constellatum
- Author
-
James A. Strother and Matthew J. McHenry
- Subjects
Negative phototaxis ,Video recording ,Larva ,animal structures ,Ecology ,Ontogeny ,fungi ,Zoology ,Kinematics ,Aquatic Science ,Biology ,biology.organism_classification ,Aplidium ,Light intensity ,Phototaxis ,sense organs ,skin and connective tissue diseases ,human activities ,Ecology, Evolution, Behavior and Systematics - Abstract
Although phototaxis has an important influence on the vertical distribution and settlement of marine invertebrate larvae, few studies have explored the mechanisms of taxis in larvae at the organismal level. We examined how phototaxis changes over ontogeny in larvae of the ascidian Aplidium constellatum and experimentally tested hypotheses about the kinematics of oriented swimming. By video recording their swimming movements at regular intervals over their ontogeny, we found that larvae switched from positive to negative phototaxis. We tested hypotheses about the kinematics of phototaxis by recording the three-dimensional movement of larvae in response to a change in the direction of illumination and by tracking the tail motion of tethered larvae in response to sinusoidal changes in light intensity. Larvae swimming with negative phototaxis changed their rate of rotation about their antero-posterior and dorso-ventral axes in response to a change in the direction of illumination. These changes in the rates of rotation caused the axis of the helical trajectory to orient away from the light source. Tethered larvae oscillated their tails at a constant tail beat frequency and with a slow periodicity that was correlated with the stimulus frequency. These findings suggest that ascidian larvae orient by changing tail motion in proportion to perceived changes in light intensity. This method of orientation predicts that larvae achieve the switch from positive to negative phototaxis by changing the delay of their kinematic response to changes in perceived light intensity.
- Published
- 2003
- Full Text
- View/download PDF
28. Larval zebrafish rapidly sense the water flow of a predator's strike
- Author
-
James A. Strother, Matthew J. McHenry, W. J. Van Trump, and K. E. Feitl
- Subjects
animal structures ,Time Factors ,Water flow ,Lateral line ,Danio ,Zoology ,Escape response ,Stimulus (physiology) ,Models, Biological ,Predation ,Animals ,Cilia ,Zebrafish ,Predator ,biology ,Ecology ,fungi ,biology.organism_classification ,Agricultural and Biological Sciences (miscellaneous) ,Biomechanical Phenomena ,Lateral Line System ,Predatory Behavior ,Animal Behaviour ,General Agricultural and Biological Sciences ,Mechanoreceptors - Abstract
Larval fishes have a remarkable ability to sense and evade the feeding strike of a predator fish with a rapid escape manoeuvre. Although the neuromuscular control of this behaviour is well studied, it is not clear what stimulus allows a larva to sense a predator. Here we show that this escape response is triggered by the water flow created during a predator's strike. Using a novel device, the impulse chamber, zebrafish (Danio rerio) larvae were exposed to this accelerating flow with high repeatability. Larvae responded to this stimulus with an escape response having a latency (mode=13–15 ms) that was fast enough to respond to predators. This flow was detected by the lateral line system, which includes mechanosensory hair cells within the skin. Pharmacologically ablating these cells caused the escape response to diminish, but then recover as the hair cells regenerated. These findings demonstrate that the lateral line system plays a role in predator evasion at this vulnerable stage of growth in fishes.
- Published
- 2009
- Full Text
- View/download PDF
29. Comparison of Generated Forces and Apical Microleakage Using Nickel-Titanium and Stainless Steel Finger Spreaders in Curved Canals
- Author
-
James M. Strother, Scott B. McClanahan, Jeffrey R. Thorpe, and Saman R. Gharai
- Subjects
Dental Leakage ,Dental Stress Analysis ,Titanium ,Molar ,Dental Instruments ,Universal testing machine ,Materials science ,Significant difference ,Metallurgy ,Compaction ,Stainless Steel ,Tooth Apex ,Nickel ,Root Canal Obturation ,Nickel titanium ,Humans ,Rotary instrumentation ,Fluid filtration ,General Dentistry ,Dental Alloys - Abstract
The purpose of this study was to compare (a) forces generated during lateral compaction and (b) apical microleakage for nickel-titanium (NiTi) and stainless steel (SS) finger spreaders. Twenty-eight extracted human teeth were instrumented using a standardized rotary instrumentation technique. NiTi and SS #30 spreaders were used to obturate molar roots while the forces generated during obturation were measured on a Universal testing machine. Apical microleakage was determined using a fluid filtration method. There was no significant difference in microleakage between spreaders. NiTi spreaders produced significantly less force than SS spreaders in all specimens (p < 0.001).
- Published
- 2005
- Full Text
- View/download PDF
30. Bottles as models: predicting the effects of varying swimming speed and morphology on size selectivity and filtering efficiency in fishes
- Author
-
James A. Strother, E. W. Misty Paig-Tran, Adam P. Summers, and Joseph J. Bizzarro
- Subjects
Gill ,Models, Anatomic ,Morphology (linguistics) ,Particle number ,Physiology ,Nanotechnology ,Aquatic Science ,Biology ,law.invention ,Suspension (chemistry) ,Sieve ,Species Specificity ,law ,Animals ,Composite material ,Particle Size ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Filtration ,Swimming ,Analysis of Variance ,Mouth ,Fishes ,Feeding Behavior ,Branchial Region ,Flow velocity ,Insect Science ,Linear Models ,Particle ,Animal Science and Zoology - Abstract
SUMMARY We created physical models based on the morphology of ram suspension-feeding fishes to better understand the roles morphology and swimming speed play in particle retention, size selectivity and filtration efficiency during feeding events. We varied the buccal length, flow speed and architecture of the gills slits, including the number, size, orientation and pore size/permeability, in our models. Models were placed in a recirculating flow tank with slightly negatively buoyant plankton-like particles (∼20–2000 μm) collected at the simulated esophagus and gill rakers to locate the highest density of particle accumulation. Particles were captured through sieve filtration, direct interception and inertial impaction. Changing the number of gill slits resulted in a change in the filtration mechanism of particles from a bimodal filter, with very small (≤50 μm) and very large (>1000 μm) particles collected, to a filter that captured medium-sized particles (101–1000 μm). The number of particles collected on the gill rakers increased with flow speed and skewed the size distribution towards smaller particles (51–500 μm). Small pore sizes (105 and 200 μm mesh size) had the highest filtration efficiencies, presumably because sieve filtration played a significant role. We used our model to make predictions about the filtering capacity and efficiency of neonatal whale sharks. These results suggest that the filtration mechanics of suspension feeding are closely linked to an animal's swimming speed and the structural design of the buccal cavity and gill slits.
- Published
- 2011
31. Locomotory transition from water to sand and its effects on undulatory kinematics in sand lances (Ammodytidae)
- Author
-
Jaquan M. Horton, James A. Strother, Nicholas J. Gidmark, Adam P. Summers, and Elizabeth L. Brainerd
- Subjects
Physiology ,Video Recording ,Kinematics ,Aquatic Science ,Head (geology) ,Paleontology ,Fish locomotion ,Animals ,Molecular Biology ,Slipping ,Ecology, Evolution, Behavior and Systematics ,World space ,biology ,Ecology ,Ammodytes ,Water ,biology.organism_classification ,Burrow ,Silicon Dioxide ,Biomechanical Phenomena ,Perciformes ,Substrate (building) ,Insect Science ,Animal Science and Zoology ,Geology ,Locomotion - Abstract
SUMMARYSand lances, fishes in the genus Ammodytes, exhibit a peculiar burrowing behavior in which they appear to swim rapidly into the substrate. They use posteriorly propagated undulations of the body to move in both water, a Newtonian fluid, and in sand, a non-Newtonian, granular substrate. In typical aquatic limbless locomotion, undulations of the body push against water, which flows because it is incapable of supporting the static stresses exerted by the animal, thus the undulations move in world space (slipping wave locomotion). In typical terrestrial limbless locomotion, these undulations push against substrate irregularities and move relatively little in world space (non-slipping wave locomotion). We used standard and X-ray video to determine the roles of slipping wave and non-slipping wave locomotion during burrowing in sand lances. We find that sand lances in water use slipping wave locomotion, similar to most aquatic undulators, but switch to non-slipping waves once they burrow. We identify a progression of three stages in the burrowing process: first, aquatic undulations similar to typical anguilliform locomotion (but without head yaw) push the head into the sand; second, more pronounced undulations of the aquatic portion of the body push most of the animal below ground; third, the remaining above-ground portion of the body ceases undulation and the subterranean portion takes over, transitioning to non-slipping wave locomotion. We find no evidence that sand lances use their body motions to fluidize the sand. Instead, as soon as enough of the body is underground, they undergo a kinematic shift and locomote like terrestrial limbless vertebrates.
- Published
- 2011
32. Effects of five thermal stressing regimens on the flexural and bond strengths of a hybrid resin composite
- Author
-
David C, Smisson, Kim E, Diefenderfer, and James M, Strother
- Subjects
Analysis of Variance ,Hot Temperature ,Polymethacrylic Acids ,Humans ,Dental Restoration, Permanent ,Shear Strength ,Composite Resins ,Molar - Abstract
Thermocycling is commonly employed in laboratory studies to simulate the in vivo aging of restorative materials. However, there is little consistency in the regimens used, and some researchers have questioned the clinical relevance and, hence, the necessity of including thermal stressing in in vitro protocols. This study examined the effects of five thermal stressing regimens on the flexural and dentin bond strengths of a hybrid resin composite.For flexural strength tests, 95 rectangular specimens (15 mm x 2 mm x 2 mm) were fabricated using a stainless steel split mold, then light cured for 60 seconds. For bond strength tests, 75 caries-free molars were flattened occlusally to expose dentin, then polished through 600 grit SiC paper; dentin surfaces were etched, rinsed and blotted dry. A dentin adhesive was applied and light cured for 30 seconds; resin composite was condensed through a stainless steel split mold (4.3 mm diameter x 3.5 mm high), then light cured for 60 seconds. All specimens were stored in deionized water for 24 hours, then stressed for 100 hours according to one of five regimens: 1) cycled between 5 degrees C and 55 degrees C (9000 cycles; 20-second dwell time); 2) held at 5 degrees C constant; 3) held at 22 degrees C constant; 4) held at 55 degrees C constant; 5) held at 5 degrees C for 50 hours, then at 55 degrees C for 50 hours. Flexural strengths were measured using an Instron 5500R and three-point bending apparatus at a crosshead speed of 0.5 mm/minute. Shear bond strengths were measured using an MTS Bionix 200 at a crosshead speed of 0.5 mm/minute.ANOVA revealed no significant differences in either flexural strength or shear bond strength among the five thermal regimens.
- Published
- 2005
33. Comparison of two different direct digital radiography systems for the ability to detect artificially prepared periapical lesions
- Author
-
Robert B. Folk, Scott B. McClanahan, James D. Johnson, Jeffery R. Thorpe, and James M. Strother
- Subjects
Human cadaver ,Analysis of Variance ,business.industry ,Radiography ,Periapical Diseases ,Significant difference ,Observation period ,Alveolar Bone Loss ,Dentistry ,Reproducibility of Results ,Mandible ,Radiography, Dental, Digital ,body regions ,Medicine ,Humans ,Statistical analysis ,business ,General Dentistry ,Digital radiography - Abstract
The purpose of this study was to compare Schick CDR and Trophy RVGui direct digital radiography (DDR) systems for the ability to detect periapical lesions in human cadaver mandibles. Digital radiographs were exposed of teeth with normal periapical areas and of teeth with artificially prepared periapical lesions using both DDR systems. Three examiners independently viewed the images at two different time periods and estimated which bony state was present. The resulting data were subjected to statistical analysis using a two-way ANOVA. Interexaminer variability was statistically analyzed using Spearman's rho. There was no significant difference in the level of accuracy between the two different DDR systems at either observation period. There was a statistically significant high level of agreement between examiners (p < 0.01). In conclusion, there was no significant difference in the accuracy of detecting artificially prepared periapical lesions between Schick CDR and Trophy RVGui DDR systems.
- Published
- 2005
34. The effects of electrostimulation on parotid saliva flow: a pilot study
- Author
-
Istvan A. Hargitai, Robert G. Sherman, and James M. Strother
- Subjects
Adult ,Male ,Saliva ,Dentistry ,Pilot Projects ,Vial ,stomatognathic system ,medicine ,Humans ,Parotid Gland ,Statistical analysis ,General Dentistry ,business.industry ,Transcutaneous electric nerve stimulation ,Salivary Gland Disorder ,Middle Aged ,Parotid gland ,medicine.anatomical_structure ,Otorhinolaryngology ,Anesthesia ,Cohort ,Transcutaneous Electric Nerve Stimulation ,Surgery ,Parotid saliva ,Female ,Oral Surgery ,business ,Secretory Rate - Abstract
Saliva is a critical fluid necessary for oral health. Medications, radiation therapy, and systemic conditions can decrease salivary function and increase a patient's risk for caries and other oral infections. Palliative management of xerostomia includes wetting agents such as ice chips and saliva substitutes. Systemic agents stimulate salivary flow but often have unfavorable side effects. All have met with limited success. The purpose of this study is to assess the effectiveness of transcutaneous electric nerve stimulation (TENS) as a means of stimulating salivary function in healthy adult subjects.Twenty-two healthy, adult subjects with no history of salivary gland disorder enrolled in the protocol. The TENS electrode pads were placed externally on the skin overlying the parotid glands. Unstimulated saliva was collected for 5 minutes via the Carlson-Crittenden cup into preweighed vials using standardized collection techniques. The TENS unit was then activated and stimulated saliva collected for an additional 5 minutes.Fifteen of 22 subjects demonstrated increased parotid salivary flow when stimulated via the TENS unit. Five experienced no increase and 2 experienced a decrease. The mean unstimulated salivary flow rate was 0.02418 mL/min (SD 0.03432) and mean stimulated salivary flow rate was 0.04946 mL/min (SD 0.04328). Statistical analysis of flow rates utilizing the paired t test demonstrated the difference to be statistically significant, P.001. In 7 subjects with 0 baseline flow, 5 continued to have no flow.The TENS unit was effective in increasing parotid gland salivary flow in two-thirds of healthy adult subjects. A further study in a cohort of patients with salivary gland disorders is warranted.
- Published
- 2005
35. Leakage and sealer penetration in smear-free dentin after a final rinse with 95% ethanol
- Author
-
Scott B. McClanahan, Richard W. Stevens, and James M. Strother
- Subjects
Materials science ,Sodium Hypochlorite ,Smear layer ,Dentistry ,Root Canal Filling Materials ,chemistry.chemical_compound ,Sealer penetration ,Dentin ,medicine ,Humans ,Zinc Oxide-Eugenol Cement ,General Dentistry ,Edetic Acid ,Leakage (electronics) ,Dental Leakage ,Ethanol ,Root Canal Irrigants ,business.industry ,Dentinal Tubule ,medicine.anatomical_structure ,chemistry ,Sodium hypochlorite ,Smear Layer ,business - Abstract
Forty extracted maxillary incisors were decoronated, prepared in a crown-down fashion and randomly divided into two groups of 16 roots each. Remaining roots served as controls. Smear layer was removed with 17% EDTA followed by 5.25% NaOCl, the canals in group N were again rinsed with NaOCl before obturation with laterally compacted gutta-percha and Roth's 801 sealer. The roots in group E were rinsed with 95% ethyl alcohol instead of NaOCl for the final rinse. Leakage was determined using a fluid-flow model. Roots were cleared, split, and sealer penetration into the dentinal tubules was measured under light-microscopy. Group E demonstrated significantly greater sealer penetration (p = 0.002) and significantly less leakage (p = 0.040), than group N. Leakage could not be significantly correlated with sealer penetration (p = 0.725). Under the conditions of this study, we found that a final rinse with 95% ethyl alcohol increased sealer penetration and decreased leakage.
- Published
- 2004
36. Cold testing through full-coverage restorations
- Author
-
John D. Allemang, James D. Johnson, Stuart O. Miller, and James M. Strother
- Subjects
Cotton pellet ,TEMPERATURE DECREASE ,Materials science ,Crowns ,Hydrocarbons, Fluorinated ,business.industry ,Dental Pulp Test ,Metal Ceramic Alloys ,Dentistry ,Full coverage ,Dental Porcelain ,Cold Temperature ,stomatognathic diseases ,Dental porcelain ,stomatognathic system ,Carbon Dioxide Snow ,Dry Ice ,Dry ice ,Gold Alloys ,Humans ,Bicuspid ,Composite material ,business ,General Dentistry ,Gold alloys - Abstract
Endodontic diagnosis often requires thermal testing through porcelain fused-to-metal (PFM) and all-ceramic restorations. The purpose of this study was to measure and compare the temperature change during thermal testing by three commonly used methods occurring at the pulp-dentin junction (PDJ) of nonrestored teeth and teeth restored with full coverage restorations made of PFM, all-porcelain, or gold. The methods used to produce a thermal change were (a) an ice stick, (b) 1,1,1,2-tetrafluoroethane (TFE), and (c) carbon dioxide snow. A thermocouple measured temperature changes occurring at the PDJ in 10 extracted premolars when thermal tested by each method over a period of 30 seconds. Temperature reduction was also measured for the same samples restored with full gold crowns, PFM, and Empress crowns. Results showed intact premolars and those restored with PFM or all-ceramic restorations to respond similarly to thermal testing. In these teeth, TFE produced a significantly greater temperature decrease than carbon dioxide snow between 10 and 25 seconds (p < 0.05). In conclusion, application of TFE on a saturated #2 cotton pellet was the most effective method for producing a temperature reduction at the PDJ of intact teeth and those restored with gold, PFM, and all-porcelain when testing for less than 15 seconds.
- Published
- 2004
37. 'Hard Times'
- Author
-
Zacharek, Stephanie
- Subjects
Hard Times (Video recording) -- Bronson, Charles -- Hill, Walter -- Coburn, James -- Martin, Strother -- Video recording reviews ,Video recordings -- Video recording reviews ,General interest ,News, opinion and commentary - Abstract
CORRECTION APPENDEDTalk about mugs: If any actor had one, it was Charles Bronson, who looked as if he emerged from the womb needing a cup of coffee. By the time [...]
- Published
- 2013
38. Compact silicon slot waveguide polarization splitter
- Author
-
Anthony Katigbak, James F. Strother, and Jie Lin
- Subjects
Materials science ,Birefringence ,Extinction ratio ,business.industry ,Photonic integrated circuit ,General Engineering ,Physics::Optics ,Integrated circuit ,Polarization (waves) ,Atomic and Molecular Physics, and Optics ,law.invention ,Slot-waveguide ,Optics ,law ,Splitter ,Optoelectronics ,business ,Electronic circuit - Abstract
A compact slot waveguide polarization splitter based on the silicon (Si) material system is proposed and analyzed. The slot waveguide structure introduces significant beat-length differences for transverse electric and transverse magnetic polarizations at operation wavelength of 1.55 µm. The special self-imaging design with limited modes and weak second-mode excitation shortens the device length to
- Published
- 2009
- Full Text
- View/download PDF
39. Evidence for mechanical power amplification in suction feeding pipefish
- Author
-
Brooke E. Flammang, Peter Aerts, Lara A. Ferry-Graham, S. Van Wassenbergh, and James A. Strother
- Subjects
Suction (medicine) ,biology ,Physiology ,Anatomy ,biology.organism_classification ,Molecular Biology ,Biochemistry ,Pipefish ,Geology ,Mechanical energy ,Marine engineering - Published
- 2007
- Full Text
- View/download PDF
40. Filter feeding in devil rays is highly sensitive to morphology.
- Author
-
Kahane-Rapport, Shirel R., Teeple, Julia, Liao, James C., Paig-Tran, E. W. M., and Strother, James A.
- Subjects
COMPUTATIONAL fluid dynamics ,MOBULIDAE ,SEAWATER ,PLANKTON ,SIEVES - Abstract
Mobulid rays (manta and devil rays) use a highly specialized filtering apparatus to separate plankton food particles from seawater. Recent studies have indicated that captive vortices form within the microscale pores of the filter, which enhance filtration efficiency through a novel mechanism referred to as ricochet separation. The high throughput and clog resistance of this filtration process have led to the development of several bioinspired engineered filtration systems. However, it is still unclear how changes to the filter morphology influence the surrounding flow patterns and filtration efficiency. We address this question by examining the flow fields around and filtering properties of mobulid filters with systematically varied morphologies, using a combination of computational fluid dynamics and experiments on physical models. While the pore size is the principal determinant of filtration efficiency in a sieve filter, we found that the captive vortices in a mobulid filter grow or shrink to fill the pore, and changes in the pore size have modest effects. By contrast, the filtration efficiency appears to be highly sensitive to the orientation of the filter lobes (microscale plate-like structures). These results provide a foundation for interpreting the morphological differences between species and also for generating optimized bioinspired designs. [ABSTRACT FROM AUTHOR]
- Published
- 2025
- Full Text
- View/download PDF
41. Relationship of Serum and Urinary Proteins in Neoplastic States: A Preliminary Survey
- Author
-
James A. Strother, H. Siemsen Smith, and A. Nettleship
- Subjects
Urinary protein ,medicine.medical_specialty ,Proteinuria ,Globulin ,medicine.medical_treatment ,Urinary system ,Biochemistry (medical) ,Clinical Biochemistry ,Urine ,Biology ,Blood proteins ,Endocrinology ,Internal medicine ,medicine ,biology.protein ,In patient ,medicine.symptom ,Dialysis - Abstract
Twenty-four-hour urine specimens from patients with and without malignancies were concentrated by dialysis. The electrophoretic mobility of the urine protein components was compared with that of the respective serum proteins. Control values were similar to those established in the literature. Urinary protein concentrations found in malignant states were higher. Generally, there is a positive correlation between serum concentration of globulins and urinary excretion. It is not possible to prove in either controls or in patients bearing malignancies that the amount of urinary protein excreted depends upon molecular size.
- Published
- 1963
- Full Text
- View/download PDF
42. Red cell in vitro metabolism in approximate steady-state
- Author
-
Barry Gendelman, James A. Strother, and John J. Imarisio
- Subjects
Blood Glucose ,Erythrocytes ,Time Factors ,Endocrinology, Diabetes and Metabolism ,Partial Pressure ,Biology ,Buffers ,In Vitro Techniques ,Endocrinology ,Adenosine Triphosphate ,Adenine nucleotide ,Methods ,Humans ,Glycolysis ,Radiometry ,Incubation ,chemistry.chemical_classification ,Carbon Isotopes ,Red Cell ,Adenine Nucleotides ,Adenine ,Carbon Dioxide ,Hydrogen-Ion Concentration ,Dilution ,Oxygen ,Enzyme ,Biochemistry ,chemistry ,Lactates ,Specific activity ,Colorimetry ,Steady state (chemistry) - Abstract
Mature human red cell metabolism was studied in an incubation system in which pH, pO 2 , metabolic end-product, glucose, and co-factor substances could be maintained at predetermined concentrations in the red cell suspension for extended periods of time. The apparatus described, which could be developed for automated operation, utilized a membrane which allowed continual replacement of buffer without loss of cells from the incubation chamber, and complete collection of metabolic end-products. It was shown that the high sensitivity of glycolytic enzyme-substrate reactions to pH change, and the rapid response of glycolysis rate to ATP energy demands produced by changing incubation environment, required such systems if advances in standardization of measurement of metabolic rates in vitro were to be made. Continual buffer replacement proved a highly effective means of exercising a high degree of control in vitro over the concentration of rate-limiting co-factors, such as adenine, in the suspension medium. Observations could be made at optimal levels of metabolic function, and under varying degrees of cell adenine nucleotide availability while the same cells served as their own experimental controls. Comparisons of total endowment of enzymatic capacity as measured by the relative ability of cells from different individuals to process substrate, it was postulated, required that the naturally occurring variation in adenine nucleotide content of red cells be taken into account. More rapid equilibration of specific activity while cells were maintained at sustained desired levels of metabolic function, afforded the opportunity for highly advantageous applications of radiotracers to kinetic and radioisotope dilution studies.
- Published
- 1969
43. New Horizons???Sunrise or Sunset?... ... Or .... Paralysis in Wonderland.
- Published
- 1984
- Full Text
- View/download PDF
44. Searching for Jimmie Strother : A Tale of Music, Murder, and Memory
- Author
-
Gregg D. Kimball and Gregg D. Kimball
- Subjects
- Folk singers--United States--Biography, Banjoists--United States--Biography, Blind musicians--United States--Biography, African American musicians--Biography
- Abstract
The incredible true story of a blind musician, a brutal crime, and the making of an American folk legend In June 1936 James Lee Strother performed thirteen songs at the Virginia State Prison Farm for famed folklorist John Lomax and the Library of Congress. Rooted in the rich soil of the Piedmont region, Strother's repertoire epitomized the Black songsters who defy easy classification. Blinded in a steel mill explosion, which only intensified his drive to connect to the world through song, Strother drew on old spirituals and country breakdowns as readily as he explored emerging genres like blues and ragtime. Biographer Gregg Kimball revives this elusive but singular talent and the creative and historical worlds in which his dramatic life unfolded. Myths surround Strother but, as Kimball reveals, the facts of Strother's life are just as compelling as the fanciful embellishments proffered by early folklorists. Musician, murderer, and beloved family member—Strother somehow played each of these roles, and more. And while the songster's comedic ditties, spirituals, and blues tunes reached a wide range of listeners (and were later covered by musicians like Pete Seeger and Jefferson Airplane), they carried a dark undercurrent that spoke directly to the experiences of Black Americans: sundown towns, Jim Crow segregation, and labor exploitation. As Kimball shows, Strother's powerful songs and remarkable, tumultuous life continue to influence and remain deeply relevant to American culture to this day.
- Published
- 2025
45. Analysis of the lack of restraint with and without belt pretensioning in 40.2 km/h rear impacts.
- Author
-
Viano, David C.
- Subjects
FORD F-Series trucks ,BELTS (Clothing) ,VIDEO recording ,TORSO ,SEAT belts ,SHOULDER ,PELVIS - Abstract
In rear impacts, the seat and seatbelt are intended to provide occupant restraint and maintain the occupant on the seat with favorable kinematics and low biomechanical responses. This study analyzes the lack of restraint provided by lap-shoulder belts in rear impacts with and without pretensioning and offers thoughts on ways to provide early restraint by seatbelts. Rear sled tests were conducted at 40.2 km/h (25 mph) delta V with a lap-shoulder belted, instrumented 50th Hybrid III. The dummy instrumentation included head, chest and pelvis triaxial acceleration and upper and lower neck triaxial loads and moments. Lap and shoulder belt loads were measured. High-speed video recorded different views of the occupant kinematics. In the first series, two sled tests were conducted with a Ford F-150 driver seat. One test was with the standard lap-shoulder belts only and a second with buckle pretensioner activation. In the second series, three matched tests were conducted with a Ford Escape driver seat. One test was with the lap-shoulder belts only, a second with retractor and anchor pretensioning and a third with only retractor pretensioning. The analysis included occupant kinematics, lap-belt movement and estimation of the load on the occupant's torso. The load was the sum of force on the upper and lower torso. The upper torso mass was 30.8 kg (67.8 lb) based on GEBOD data for the 50th Hybrid III. It was multiplied by the resultant chest acceleration to calculate the upper torso force. The lower-torso mass was 30.9 kg (68.0 lb). It was multiplied by the resultant pelvic acceleration to calculate the lower torso force. The total load on the seatback was the sum of the upper and lower torso force. The change in angle (θ) of the lap belt was determined by video analysis. The angle θ was from the horizontal up to a line through the lap-belt webbing. Ways to provide early lap-belt restraint were considered. The rear sled testing at 40.2 km/h (25 mph) showed that the seatbelt provided essentially no restraint of the rearward movement of the occupant. The seat provided essentially all of the rearward restraint with and without pretensioning. There was minimal lap belt load in the series with the dual recliner Escape seat, except for a spike caused by pretensioning. There was more seat deformation in the tests with the single-side recliner F-150 seat. There were higher belt loads. The lap belt limited the lifting of the hips and thighs with essentially no rearward restraint of the occupant. Tension in the lap belt did not relate to restraint of rearward movement of the occupant. Seatbelts provided forward restraint of the occupant during rebound with the belts providing noticeable deceleration of the chest and pelvis. Concepts were considered to provide early lap-belt restraint. One involved a rear pretensioner that dynamically moves the lap-belt anchor forward and upward while tightening the belts in a rear impact. This provides a lap-belt angle greater than θ = 90 deg before occupant movement. With this geometry, the lap belt restrains rearward movement of the occupant and pulls the hip down early in a rear impact. Seatbelts and pretensioners were designed for occupant restraint in frontal crashes, so it is not a surprise they do not provide much restraint of an occupant in rear impacts up to 40.2 km/h (25 mph). The lack of early lap-belt restraint is due to the unfavorable belt angle from the anchors over the hip. A concept is discussed that dynamically moves the anchors in rear impacts to provide early belt restraint. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
46. Corollary discharge enables proprioception from lateral line sensory feedback.
- Author
-
Skandalis, Dimitri A., Lunsford, Elias T., and Liao, James C.
- Subjects
PROPRIOCEPTION ,PERIPHERAL nervous system ,CELL physiology ,NEUROPLASTICITY ,CENTRAL nervous system ,POSTURE - Abstract
Animals modulate sensory processing in concert with motor actions. Parallel copies of motor signals, called corollary discharge (CD), prepare the nervous system to process the mixture of externally and self-generated (reafferent) feedback that arises during locomotion. Commonly, CD in the peripheral nervous system cancels reafference to protect sensors and the central nervous system from being fatigued and overwhelmed by self-generated feedback. However, cancellation also limits the feedback that contributes to an animal's awareness of its body position and motion within the environment, the sense of proprioception. We propose that, rather than cancellation, CD to the fish lateral line organ restructures reafference to maximize proprioceptive information content. Fishes' undulatory body motions induce reafferent feedback that can encode the body's instantaneous configuration with respect to fluid flows. We combined experimental and computational analyses of swimming biomechanics and hair cell physiology to develop a neuromechanical model of how fish can track peak body curvature, a key signature of axial undulatory locomotion. Without CD, this computation would be challenged by sensory adaptation, typified by decaying sensitivity and phase distortions with respect to an input stimulus. We find that CD interacts synergistically with sensor polarization to sharpen sensitivity along sensors' preferred axes. The sharpening of sensitivity regulates spiking to a narrow interval coinciding with peak reafferent stimulation, which prevents adaptation and homogenizes the otherwise variable sensor output. Our integrative model reveals a vital role of CD for ensuring precise proprioceptive feedback during undulatory locomotion, which we term external proprioception. Animals modulate sensory processing in concert with motor actions. A study of the corollary discharge in zebrafish reveals that it modulates the sensitivity of the lateral line during swimming to prevent sensor adaptation and maintain the high-quality feedback necessary for kinematic control. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
47. Evaluations of pretensioner activation in rear impacts.
- Author
-
Parenteau, Chantal S., Viano, David C., and Burnett, Roger A.
- Subjects
RETRIEVAL practice ,SLIDING friction ,REFERENCE values ,KINEMATICS ,SHOULDER ,PELVIS ,NECK - Abstract
Occupant kinematics and biomechanical responses are assessed with and without pretensioning of normally seated and out-of-position front-seat occupants in rear sled tests. The results are compared to recent studies. Three series of rear sled tests were conducted at 24 and 40 km/h with a 2001 Ford Taurus. Series I consisted of two sled tests with a lap-shoulder belted 50
th Hybrid III in the driver seat. Series II included four sled tests with a lap-shoulder belted 50th Hybrid III in both front seats. Two soft foam blocks were added, one was placed on the chest centerline under the shoulder belt and one on the pelvis under the lap belt providing additional webbing. Series III consisted of 8 runs and 16 ATD tests to assess the effect of pretensioning with out-of-positioned (OOP) occupants. The biomechanical responses were normalized with Injury Assessment Reference Values (IARV) for head, neck and chest. The ATD kinematics and biomechanical responses were similar in the yielding phase when the occupant was normally seated with and without pretensioning. The rebound displacement was greater with pretensioning in the 40 km/h tests due to the shoulder belt slipping off the shoulder. The hip displacement was similar, irrespective of pretensioning. All biomechanical responses were below IARVs. The highest response was for lower neck extension. The normalized response was at about 32% for the 24 km/h tests, irrespective of pretensioning. It was up to 59% in the 40 km/h tests with pretensioning. With the OOP occupants, there were no differences in the kinematics and biomechanical response with pretensioning. Testing of the effect of retractor pretensioning with out-of-position occupants and additional belt webbing in moderate to high-speed rear sled tests shows no effect on occupant kinematics and biomechanical responses. The displacement of the hips in a rear impact depends on the compliance of the seatback and amount of pocketing, the stiffness of the seat frame limiting rearward rotation, and the dynamic friction between the occupant and the seatback. [ABSTRACT FROM AUTHOR]- Published
- 2021
- Full Text
- View/download PDF
48. Influence of retractor and anchor pretensioning on dummy responses in 40 km/h rear sled tests.
- Author
-
Viano, David C., Burnett, Roger A., Miller, Gregory A., and Parenteau, Chantal S.
- Subjects
THORACIC vertebrae ,LUMBAR vertebrae ,SLEDS ,SEAT belts ,VIDEO recording - Abstract
Objective: This study compared dummy kinematics and biomechanical responses with and without retractor pretensioning in a severe rear sled test. It compliments an earlier study with buckle pretensioning.Methods: Three rear tests were run at 40 km/h (25 mph) delta V with a lap-shoulder belted Hybrid III 50th male dummy on a 2013-18 Ford Escape driver seat and belt restraint. One test was with the lap-shoulder belts only, a second with retractor and anchor pretensioning and a third with only retractor pretensioning. The head, chest and pelvis were instrumented with triaxial accelerometers. The upper and lower neck, thoracic spine and lumbar spine had transducers measuring triaxial loads and moments. Lap belt load was measured. High-speed video recorded different views of the dummy motion. Dummy kinematics and biomechanical responses were compared to determine the influence of retractor belt pretensioning.Results: The dummy kinematics and biomechanical responses were essentially similar with and without retractor or retractor and anchor pretensioning in rear sled tests. There was an initial spike in lap belt load with pretensioning, but it did not result in different dummy head, neck or chest responses. In the tests, the dummy moved rearward away from the shoulder belt. The belts were tightened with the rapid pull on the webbing by pretensioning. The dummy loaded the seat, which yielded rearward restraining its motion. There was no significant effect of pretensioning on the dynamics of the dummy until late in rebound.Conclusions: There were no significant differences in dynamics of the Hybrid III with and without retractor or retractor and anchor pretensioning in a 40 km/h (25 mph) rear sled test. Belt pretensioning did not influence biomechanical responses in the rear impact because the seat supported the dummy. [ABSTRACT FROM AUTHOR]- Published
- 2021
- Full Text
- View/download PDF
49. Biolayer interferometry provides a robust method for detecting DNA binding small molecules in microbial extracts.
- Author
-
Overacker, Ross D., Plitzko, Birte, and Loesgen, Sandra
- Subjects
SMALL molecules ,DNA ,INTERFEROMETRY ,MICROBIAL metabolites ,DNA replication ,DACTINOMYCIN ,DOXORUBICIN - Abstract
DNA replication is an exceptional point of therapeutic intervention for many cancer types and several small molecules targeting DNA have been developed into clinically used antitumor agents. Many of these molecules are naturally occurring metabolites from plants and microorganisms, such as the widely used chemotherapeutic doxorubicin. While natural product sources contain a vast number of DNA binding small molecules, isolating and identifying these molecules is challenging. Typical screening campaigns utilize time-consuming bioactivity-guided fractionation approaches, which use sequential rounds of cell-based assays to guide the isolation of active compounds. In this study, we explore the use of biolayer interferometry (BLI) as a tool for rapidly screening natural product sources for DNA targeting small molecules. We first verified that BLI robustly detected DNA binding using designed GC- and AT-rich DNA oligonucleotides with known DNA intercalating, groove binding, and covalent binding agents including actinomycin D (1), doxorubicin (2), ethidium bromide (3), propidium iodide (4), Hoechst 33342 (5), and netropsin (6). Although binding varied with the properties of the oligonucleotides, measured binding affinities agreed with previously reported values. We next utilized BLI to screen over 100 bacterial extracts from our microbial library for DNA binding activity and found three highly active extracts. Binding-guided isolation was used to isolate the active principle component from each extract, which were identified as echinomycin (8), actinomycin V (9), and chartreusin (10). This biosensor-based DNA binding screen is a novel, low-cost, easy to use, and sensitive approach for medium-throughput screening of complex chemical libraries. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
50. Symposia and Oral Abstracts.
- Subjects
ANIMAL jumping ,MUSCLE physiology ,TENDON physiology ,OCTOPAMINE ,SEXUAL selection ,CROTAPHYTUS collaris ,INSECTS - Published
- 2019
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.