1. ZIP Code to Genomic Code: Neighborhood Disadvantage, Aggressive Breast Cancer Biology, and Breast Cancer Outcomes.
- Author
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Goel N, Hernandez AE, Antoni MH, Kesmodel S, Pinheiro PS, Kobetz E, Merchant N, and Cole SW
- Subjects
- Humans, Female, Middle Aged, Residence Characteristics, Biomarkers, Tumor genetics, Biomarkers, Tumor metabolism, Transcription Factors genetics, Transcription Factors metabolism, Prognosis, Aged, Adult, Prospective Studies, Breast Neoplasms genetics, Breast Neoplasms pathology
- Abstract
Objective: To determine the association between objective (geospatial) and subjective (perceived) measures of neighborhood disadvantage (ND) and aggressive breast cancer tumor biology, defined using validated social adversity-associated transcription factor (TF) activity and clinical outcomes., Background: ND is associated with shorter breast cancer recurrence-free survival (RFS), independent of individual, tumor, and treatment characteristics, suggesting potential unaccounted biological mechanisms by which ND influences RFS., Methods: We quantified TF-binding motif prevalence within promoters of differentially expressed genes for 147 tissue samples prospectively collected on the protocol. Covariate-adjusted multivariable regression analyzed objective and subjective ND scores with 5 validated TFs of social adversity and aggressive biology-pro-inflammatory activity [nuclear factor-κB ( NF-kB ), activator protein 1 ( AP-1 )], sympathetic nervous system (SNS) activity [cyclic 3'-5' adenosine monophosphate response element-binding protein ( CREB )], and protective cellular responses [interferon-regulatory factor ( IRF ) and signal transducer and activator of transcription ( STAT )]. To clinically validate these TFs as prognostic biomarkers of aggressive biology, logistic regression and multivariable Cox proportional-hazards models analyzed their association with Oncotype DX scores and RFS, respectively., Results: Increasing objective ND was associated with aggressive tumor biology (up-regulated NF-kB , activator protein 1, down-regulated IRF , and signal transducer and activator of transcription) and SNS activation (up-regulated CREB ). Increasing subjective ND (eg, threat to safety) was associated with up-regulated NF-kB and CREB and down-regulated IRF . These TF patterns were associated with high-risk Oncotype DX scores and shorter RFS., Conclusions: In the largest human social genomics study, objective and subjective ND were significantly associated with TFs of aggressive biology and SNS activation. These TFs also correlated with worse clinical outcomes, implicating SNS activation as one potential mechanism behind ND survival disparities. These findings remain to be validated in a national cohort., Competing Interests: N.G. is funded by an Breast Cancer Research Foundation, Paul Calabresi Award, American Surgical Association Fellowship Award, American Society of Clinical Oncology (ASCO) Career Development Award, and an NIH P50 Transdisciplinary Cancer Control Support Grant. Also, she is a paid technical consultant for the World Health Organization. M.A. is funded by the Florida Breast Cancer Foundation; NIH grants R01CA206456, UG3 CA260317, R61 CA263335, R37 CA255875; a PCORI grant AD-2020C3-21171; and an NIH P50 Transdisciplinary Cancer Control Support Grant. Also, he is a paid consultant for Blue Note Therapeutics and Atlantis Healthcare. He is also the inventor of Cognitive Behavioral Stress Management, filed with the University of Miami as UMIP-483, which is licensed to Blue Note Therapeutics. S.C. is funded by the NIH K12 and NIA P30-AG017265. A.E.H. is funded by the Ruth L. Kirschstein Institutional National Research Service Award, T32CA211034. The remaining authors report no conflicts of interest., (Copyright © 2024 Wolters Kluwer Health, Inc. All rights reserved.)
- Published
- 2024
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