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Understanding metric-related pitfalls in image analysis validation

Authors :
Reinke, Annika
Tizabi, Minu D.
Baumgartner, Michael
Eisenmann, Matthias
Heckmann-Nötzel, Doreen
Kavur, A. Emre
Rädsch, Tim
Sudre, Carole H.
Acion, Laura
Antonelli, Michela
Arbel, Tal
Bakas, Spyridon
Benis, Arriel
Blaschko, Matthew
Buettner, Florian
Cardoso, M. Jorge
Cheplygina, Veronika
Chen, Jianxu
Christodoulou, Evangelia
Cimini, Beth A.
Collins, Gary S.
Farahani, Keyvan
Ferrer, Luciana
Galdran, Adrian
van Ginneken, Bram
Glocker, Ben
Godau, Patrick
Haase, Robert
Hashimoto, Daniel A.
Hoffman, Michael M.
Huisman, Merel
Isensee, Fabian
Jannin, Pierre
Kahn, Charles E.
Kainmueller, Dagmar
Kainz, Bernhard
Karargyris, Alexandros
Karthikesalingam, Alan
Kenngott, Hannes
Kleesiek, Jens
Kofler, Florian
Kooi, Thijs
Kopp-Schneider, Annette
Kozubek, Michal
Kreshuk, Anna
Kurc, Tahsin
Landman, Bennett A.
Litjens, Geert
Madani, Amin
Maier-Hein, Klaus
Martel, Anne L.
Mattson, Peter
Meijering, Erik
Menze, Bjoern
Moons, Karel G. M.
Müller, Henning
Nichyporuk, Brennan
Nickel, Felix
Petersen, Jens
Rafelski, Susanne M.
Rajpoot, Nasir
Reyes, Mauricio
Riegler, Michael A.
Rieke, Nicola
Saez-Rodriguez, Julio
Sánchez, Clara I.
Shetty, Shravya
van Smeden, Maarten
Summers, Ronald M.
Taha, Abdel A.
Tiulpin, Aleksei
Tsaftaris, Sotirios A.
Van Calster, Ben
Varoquaux, Gaël
Wiesenfarth, Manuel
Yaniv, Ziv R.
Jäger, Paul F.
Maier-Hein, Lena
Reinke, Annika
Tizabi, Minu D.
Baumgartner, Michael
Eisenmann, Matthias
Heckmann-Nötzel, Doreen
Kavur, A. Emre
Rädsch, Tim
Sudre, Carole H.
Acion, Laura
Antonelli, Michela
Arbel, Tal
Bakas, Spyridon
Benis, Arriel
Blaschko, Matthew
Buettner, Florian
Cardoso, M. Jorge
Cheplygina, Veronika
Chen, Jianxu
Christodoulou, Evangelia
Cimini, Beth A.
Collins, Gary S.
Farahani, Keyvan
Ferrer, Luciana
Galdran, Adrian
van Ginneken, Bram
Glocker, Ben
Godau, Patrick
Haase, Robert
Hashimoto, Daniel A.
Hoffman, Michael M.
Huisman, Merel
Isensee, Fabian
Jannin, Pierre
Kahn, Charles E.
Kainmueller, Dagmar
Kainz, Bernhard
Karargyris, Alexandros
Karthikesalingam, Alan
Kenngott, Hannes
Kleesiek, Jens
Kofler, Florian
Kooi, Thijs
Kopp-Schneider, Annette
Kozubek, Michal
Kreshuk, Anna
Kurc, Tahsin
Landman, Bennett A.
Litjens, Geert
Madani, Amin
Maier-Hein, Klaus
Martel, Anne L.
Mattson, Peter
Meijering, Erik
Menze, Bjoern
Moons, Karel G. M.
Müller, Henning
Nichyporuk, Brennan
Nickel, Felix
Petersen, Jens
Rafelski, Susanne M.
Rajpoot, Nasir
Reyes, Mauricio
Riegler, Michael A.
Rieke, Nicola
Saez-Rodriguez, Julio
Sánchez, Clara I.
Shetty, Shravya
van Smeden, Maarten
Summers, Ronald M.
Taha, Abdel A.
Tiulpin, Aleksei
Tsaftaris, Sotirios A.
Van Calster, Ben
Varoquaux, Gaël
Wiesenfarth, Manuel
Yaniv, Ziv R.
Jäger, Paul F.
Maier-Hein, Lena
Publication Year :
2023

Abstract

Validation metrics are key for the reliable tracking of scientific progress and for bridging the current chasm between artificial intelligence (AI) research and its translation into practice. However, increasing evidence shows that particularly in image analysis, metrics are often chosen inadequately in relation to the underlying research problem. This could be attributed to a lack of accessibility of metric-related knowledge: While taking into account the individual strengths, weaknesses, and limitations of validation metrics is a critical prerequisite to making educated choices, the relevant knowledge is currently scattered and poorly accessible to individual researchers. Based on a multi-stage Delphi process conducted by a multidisciplinary expert consortium as well as extensive community feedback, the present work provides the first reliable and comprehensive common point of access to information on pitfalls related to validation metrics in image analysis. Focusing on biomedical image analysis but with the potential of transfer to other fields, the addressed pitfalls generalize across application domains and are categorized according to a newly created, domain-agnostic taxonomy. To facilitate comprehension, illustrations and specific examples accompany each pitfall. As a structured body of information accessible to researchers of all levels of expertise, this work enhances global comprehension of a key topic in image analysis validation.<br />Comment: Shared first authors: Annika Reinke and Minu D. Tizabi; shared senior authors: Lena Maier-Hein and Paul F. J\"ager. Published in Nature Methods. arXiv admin note: text overlap with arXiv:2206.01653

Details

Database :
OAIster
Publication Type :
Electronic Resource
Accession number :
edsoai.on1381599729
Document Type :
Electronic Resource
Full Text :
https://doi.org/10.1038.s41592-023-02150-0