91 results on '"transport media"'
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2. Efficacy of Natural Coconut Water, Pre-packaged Coconut Water, and Hank’s Balanced Salt Solution as Storage Media in Maintaining Periodontal Ligament Cell Viability: An In-vitro Study
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Sara Samreen, Rituraj Kesri, Ankita Ukey, Pratik Surana, Anshuta Sahu, Pankaj Agrawal, and Owais Rahman
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alternative storage media ,natural remedies ,reimplantation ,tooth preservation ,transport media ,trauma ,Medicine - Abstract
Introduction: Avulsion of teeth is one of the most complex forms of dental injury, and the selection of an appropriate storage medium greatly influences the preservation of Periodontal Ligament (PDL) cell viability, which is crucial for the successful re-implantation of avulsed teeth. Therefore, identifying effective storage options such as natural coconut water and pre-packaged coconut water holds significant promise in improving outcomes for this challenging dental injury. Aim: To evaluate the efficacy of natural coconut water, pre-packaged coconut water, and Hank’s Balanced Salt Solution (HBSS) as storage media in maintaining PDL cell viability. Materials and Methods: A total of 32 non-carious freshly extracted human premolars were randomly divided into four study groups (n=8) and stored in the following storage media respectively: Group I-Natural coconut water group, Group II-Pre-packaged coconut water group, Group III-Bench dry group, and Group IV-HBSS groups for 30 minutes. The PDL cells were collected and incubated in phosphate buffer saline for 30 minutes and then centrifuged at 800 rpm for five minutes. Following this, the cells were stained with trypan blue to observe their viability. The Analysis of Variance (ANOVA) with Tukey’s post-hoc test was used for analysing the data. Results: The mean percentage of viable cells in natural coconut water (80.6250) was higher than in HBSS (79.8750), pre-packaged coconut water (79.2500), and the bench dry group (6.1250). Meanwhile, the mean percentage of non-viable cells was highest in the bench dry group (93.8750), followed by the pre-packaged coconut water (20.7500), HBSS (20.1250), and natural coconut water (19.3750). Conclusion: Natural coconut water and pre-packaged coconut water are equally effective in maintaining the viability of PDL cells. Therefore, pre-packaged coconut water can be used as a substitute for natural coconut water for tooth storage, depending upon availability.
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- 2024
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3. Direct Immunofluorescence of Skin and Oral Mucosa: Guidelines for Selecting the Optimum Biopsy Site.
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Mahmood, Muhammad N.
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ORAL mucosa , *IMMUNOFLUORESCENCE , *MUCOSITIS , *CONNECTIVE tissue diseases , *BIOPSY - Abstract
Direct immunofluorescence is a vital diagnostic test for assessing vesiculobullous disorders, vasculitides, and connective tissue diseases. It is a robust and valuable technique that offers essential diagnostic information for many critical dermatoses. Dermatopathologists depend heavily on the data obtained from direct immunofluorescence evaluation to confirm final diagnoses. Selecting the most appropriate biopsy site is necessary for maximizing diagnostic accuracy, and the best site may vary depending on the clinical differential diagnosis. Inaccurate biopsy site selection can significantly impact the accuracy of the results. To optimize the use of direct immunofluorescence studies, this review provides helpful guidelines and some practical tips for selecting the best biopsy site. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Efficacy of Natural Coconut Water, Pre-packaged Coconut Water, and Hank's Balanced Salt Solution as Storage Media in Maintaining Periodontal Ligament Cell Viability: An In-vitro Study.
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SAMREEN, SARA, KESRI, RITURAJ, UKEY, ANKITA, SURANA, PRATIK, SAHU, ANSHUTA, AGRAWAL, PANKAJ, and RAHMAN, OWAIS
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COCONUT water , *PHYSIOLOGIC salines , *PERIODONTAL ligament , *CELL survival , *FEASIBILITY studies - Abstract
Introduction: Avulsion of teeth is one of the most complex forms of dental injury, and the selection of an appropriate storage medium greatly influences the preservation of Periodontal Ligament (PDL) cell viability, which is crucial for the successful re-implantation of avulsed teeth. Therefore, identifying effective storage options such as natural coconut water and prepackaged coconut water holds significant promise in improving outcomes for this challenging dental injury. Aim: To evaluate the efficacy of natural coconut water, prepackaged coconut water, and Hank's Balanced Salt Solution (HBSS) as storage media in maintaining PDL cell viability. Materials and Methods: A total of 32 non-carious freshly extracted human premolars were randomly divided into four study groups (n=8) and stored in the following storage media respectively: Group I-Natural coconut water group, Group IIPre-packaged coconut water group, Group III-Bench dry group, and Group IV-HBSS groups for 30 minutes. The PDL cells were collected and incubated in phosphate buffer saline for 30 minutes and then centrifuged at 800 rpm for five minutes. Following this, the cells were stained with trypan blue to observe their viability. The Analysis of Variance (ANOVA) with Tukey's post-hoc test was used for analysing the data. Results: The mean percentage of viable cells in natural coconut water (80.6250) was higher than in HBSS (79.8750), prepackaged coconut water (79.2500), and the bench dry group (6.1250). Meanwhile, the mean percentage of non-viable cells was highest in the bench dry group (93.8750), followed by the pre-packaged coconut water (20.7500), HBSS (20.1250), and natural coconut water (19.3750). Conclusion: Natural coconut water and pre-packaged coconut water are equally effective in maintaining the viability of PDL cells. Therefore, pre-packaged coconut water can be used as a substitute for natural coconut water for tooth storage, depending upon availability. [ABSTRACT FROM AUTHOR]
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- 2024
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5. Head and Neck Pathology: Practical Points to Ponder
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Mitchell, Bridget, Kee, Jing F., Peart, Lisa K., Mitchell, Duncan, Burton, Ian, editor, and Klaassen, Michael F., editor
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- 2022
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6. Quest for ideal transport conditions and factors affecting revival of Neisseria gonorrhoeae isolates: Experience of a National Reference Laboratory.
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Kirti, Madhavi, Muralidhar, Sumathi, Lachyan, Abhishek, Sharma, Devanshi, Joshi, Naveen, and Khunger, Niti
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NEISSERIA gonorrhoeae , *GOVERNMENT laboratories , *MICROBIAL sensitivity tests , *NEISSERIA , *GRAM-negative bacteria , *LABORATORY technicians - Abstract
Background: Neisseria gonorrhoeae (Gonococcus-GC) is a fastidious, autolytic Gram-negative diplococcus with stringent growth requirements, and cannot be cultivated in a routine microbiology laboratory, without well-equipped incubators, reagents, and special media. Hence, many clinics and laboratories prefer to ship the specimens or isolates to a dedicated referral laboratory for confirmation of isolates and antimicrobial susceptibility testing. Thus, transportation conditions for gonococcal isolates, become crucial for its recovery and successful isolation in the laboratory. This retrospective study was conducted at a national referral laboratory for gonococcus, in India, over 3 years. Aim: In this study, an attempt was made to determine the factors affecting the revival of isolates of gonococci, that were despatched, from across India, to the referral laboratory for confirmation of species and antimicrobial susceptibility patterns. Method: Over 3 years, the culture plates, test tubes, or vials used for transporting gonococcal isolates, and their modes of transport to the referral laboratory, were studied in detail. The isolates were revived (whenever possible), subcultured, and identified by standard methods in the referral laboratory. Results: A total of 77 samples were processed for revival and 83.12% of isolates were recovered, with failure of recovery in 16.88% of specimens. Conclusion: Several factors play a role in the successful revival of N. gonorrhoeae from culture isolates transported across the Indian subcontinent. These include purity of growth, culture media used for transport, sending of isolates in duplicates, temperature, time, distance, and season of transport. All these factors must be kept in mind when transporting gonococcal isolates, for successful revival. Finally, the skills of the laboratory technician are of immense importance too. [ABSTRACT FROM AUTHOR]
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- 2023
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7. Comparison of Four Swab and Transport Media Combinations for the Detection of Respiratory Viruses.
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Su Kyung Lee, Eun-Jung Cho, Jungwon Hyun, Eun Ju Jung, Heungjeong Woo, Seon-Hee Shin, and Hyun Soo Kim
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PLANT viruses ,PLANT growing media ,INFLUENZA A virus ,INFLUENZA viruses - Abstract
Background: We compared four combinations of nasopharyngeal swabs and transport media for their ability to transfer and recover viruses under different storage conditions. Methods: Each swab was immersed in culture supernatants of influenza A virus (IAV), respiratory syncytial virus, and adenovirus, placed in transport medium, and stored at -20°C, +4°C, +20 to 25°C, and +37°C for 5 days. On each day, virus culture and real-time PCR were performed for each virus. Results: All samples under different storage conditions showed positive results up to 5 days using both virus culture and real-time PCR. Real-time PCR showed that samples stored at -20°C, 4°C, and 20 - 25°C were within two cycle thresholds (Cts) up to 5 days, but IAV at 37°C showed that viral titer decreased after 3 days. Conclusions: Our results indicate that these swab and transport media maintained the stability of the above viruses for 5 days at room temperature, refrigerated, and frozen storage conditions. [ABSTRACT FROM AUTHOR]
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- 2022
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8. RT-PCR detection of SARS-CoV-2 in nasopharyngeal and salivary specimens: contribution of alternative collection systems and extraction processes to cope with mass screening. Interpretation of low viral loads
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Robinet Sylvain, Parisot François, Cochonot Laurie, Schiltz Benjamin, Paboeuf Camille, Nedelec Clement, Espinet Laurent, and Heddebaut Alexis
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contagiousness ,covid-19 ,ct interpretation ,rna ,sars-cov-2 ,transport media ,Medical technology ,R855-855.5 - Abstract
Due to massive screening of the persistent coronavirus SARS-CoV-2, supply difficulties emerged for swabs and extraction reagents leading to test alternative choices. Quality sampling may have an impact on the result and a low RNA detection may be difficult to interpret because it does not necessarily mean that infectious particles are present in biological samples. There is a need to understand whether the Ct value information is relevant and informative.
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- 2022
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9. Optimal preparation of SARS-CoV-2 viral transport medium for culture
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Julie McAuley, Claire Fraser, Elena Paraskeva, Elizabeth Trajcevska, Michelle Sait, Nancy Wang, Eric Bert, Damian Purcell, and Richard Strugnell
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SARS-CoV-2 ,Culture ,Transport media ,VTM ,Diagnosis ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Introduction The sudden arrival of the COVID-19 pandemic placed significant stresses on supply chains including viral transport medium (VTM). The VTM that was urgently required needed to support viral replication, as well as other routine diagnostic approaches. We describe the preparation and validation testing of VTM for rapidly expanding diagnostic testing, where the capacity of the VTM to preserve viral integrity, for culture, isolation and full sequence analysis, was maintained. Methods VTM was prepared using different methods of sterilization then ‘spiked’ with virus. The VTM was investigated using viral culture in Vero cells, and for nucleic acid detection by quantitative PCR. Results The best results were obtained by filter and autoclave-based sterilization. The VTM proved robust for culture-based analyses provided the inoculated VTM was stored at 4 °C, and tested within 48 h. The filtered VTM also supported PCR-based diagnosis for at least 5 days when the mock inoculated VTM was held at room temperature. Discussion The manual handling of VTM production, including filling and sterilization, was optimized. SARS-CoV-2 was spiked into VTM to assess different sterilization methods and measure the effects of storage time and temperature upon VTM performance. While most diagnostic protocols will not require replication competent virus, the use of high quality VTM will allow for the next phase of laboratory analysis in the COVID-19 pandemic, including drug and antibody susceptibility analysis of re-isolated SARS-CoV-2, and for the testing of vaccine escape mutants.
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- 2021
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10. Pengembangan Media Transpor untuk Koleksi Sampel Preputium, untuk deteksi Bovine Genital Campylobacteriosis
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Apris Beniawan, Agustin Indrawati, and Fachriyan Hasmi Pasaribu
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bacteria culture ,campylobacter fetus subs. venerealis (cfv) ,developed media ,transport media ,Veterinary medicine ,SF600-1100 - Abstract
Campylobacter fetus subsp. Venerealis (Cfv) is bacteria causing contagious genital diseases in cows called Bovine Genital Campylobacteriosis (BGC) or vibriosis. Isolation of Cfv is difficult, because the bacteria are fragile and need specific nutrients and oxygen (5-10%). The transport media is very important to maintain Cfv survival before culturing in laboratory. The aim of this study was to modify a new transport media as an alternative media for Cfv. Developed media capability was compared to Weybridge media, and Phosphate Buffered Saline (PBS). All transport media was contaminated by Cfv with concentrations of 105,104,103,102,101 (CFU/ml), and was stored for
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- 2020
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11. Primary school teachers' knowledge of immediate management of permanent tooth avulsion
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Emmanuel Obiajulu Amobi, Nneka Kate Onyejaka, Chidozie Ifechi Onwuka, and Linda Oge Okoye
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first aid ,immediate management ,knowledge ,permanent tooth avulsion ,school teachers ,transport media ,Medicine - Abstract
Background: This study assessed primary school teachers' knowledge of immediate management of tooth avulsion in Enugu, Nigeria. Methods: This was a cross-sectional study of 135 primary school teachers in Enugu metropolis of Enugu State, Nigeria. Data on sex, age, academic qualification, school type, years of service, and the knowledge of immediate management of avulsed tooth among primary school teachers were collected using a self-administered questionnaire. The data were analyzed using the SPSS software version 18. The level of significance was set at P < 0.05. Results: The age of study participants ranged from 20 to 58 years. Many teachers in public schools 73 (54.1%) and those with bachelor degree in education 69 (51.1%) participated in the study, They were mostly females 123 (91.1%). The year of service of the teachers ranged from 1 year to 35 years. Only 25 (18.5%) of the teachers had good knowledge of the immediate management of avulsed teeth. Six (4.4%) knew that re-implantation was the immediate treatment for an avulsed permanent tooth. However, there was a significant association between sex (P < 0.001) and having good knowledge of the management of avulsion, but there was no significant association between age (P = 0.42), school type (P = 0.27) qualification (P = 0.09), year of service (P = 0.42), and having good knowledge of the management of avulsion. Conclusion: Few primary school teachers had good knowledge of immediate management of avulsed tooth indicating the need for increased oral health awareness among teachers in the study area.
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- 2020
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12. Evaluation of transport media for laboratory detection of SARS‐CoV‐2 in upper respiratory tract swab specimens.
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Penrod, Yvonne, Garcia, Denise, and Dunn, S. Terence
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COVID-19 ,SARS-CoV-2 ,COVID-19 pandemic ,GOVERNMENT laboratories ,NATIONAL competency-based educational tests - Abstract
The reduced availability of commercial swabs and transport media for testing and administrative demands for increased testing capacity during the coronavirus disease 2019 (COVID‐19) public health emergency has seriously challenged national laboratory testing programs, forcing many to use nontraditional collection devices, often without typical analytical assessment of their suitability in testing. Five common transport media (four commercial and one in‐house) were evaluated for their suitability in the collection of nasopharyngeal swab specimens for subsequent molecular detection of severe acute respiratory syndrome‐associated coronavirus 2 (SARS‐CoV‐2). Results suggest that these transport media provide dependable temporal stability of the SARS‐CoV‐2 virus without significant analytical interference of molecular assays. These findings are not only important for addressing critical laboratory supply chain shortages of transport media in the current COVID‐19 health crisis but also for future pandemic planning, when again supplies of commercially available transport media might be depleted. Highlights: ‐ Five common transport media (VTM, UTM, M4RT, Amies and saline) used to collect and transport nasopharyngeal (NP) swab specimens for laboratory detection of SARS‐CoV‐2 demonstrate comparable performance in two different rRT‐PCR‐based assays.‐ SARS‐CoV‐2‐positive NP swabs collected in five different transport media demonstrate excellent stability of viral target sequences when stored at 2‐4oC and analyzed by rRT‐PCR over at least 4 days. [ABSTRACT FROM AUTHOR]
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- 2021
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13. Optimal preparation of SARS-CoV-2 viral transport medium for culture.
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McAuley, Julie, Fraser, Claire, Paraskeva, Elena, Trajcevska, Elizabeth, Sait, Michelle, Wang, Nancy, Bert, Eric, Purcell, Damian, and Strugnell, Richard
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SARS-CoV-2 , *COVID-19 pandemic , *VACCINE trials , *CELL culture , *NUCLEIC acids , *WATER bottles - Abstract
Introduction: The sudden arrival of the COVID-19 pandemic placed significant stresses on supply chains including viral transport medium (VTM). The VTM that was urgently required needed to support viral replication, as well as other routine diagnostic approaches. We describe the preparation and validation testing of VTM for rapidly expanding diagnostic testing, where the capacity of the VTM to preserve viral integrity, for culture, isolation and full sequence analysis, was maintained. Methods: VTM was prepared using different methods of sterilization then 'spiked' with virus. The VTM was investigated using viral culture in Vero cells, and for nucleic acid detection by quantitative PCR. Results: The best results were obtained by filter and autoclave-based sterilization. The VTM proved robust for culture-based analyses provided the inoculated VTM was stored at 4 °C, and tested within 48 h. The filtered VTM also supported PCR-based diagnosis for at least 5 days when the mock inoculated VTM was held at room temperature. Discussion: The manual handling of VTM production, including filling and sterilization, was optimized. SARS-CoV-2 was spiked into VTM to assess different sterilization methods and measure the effects of storage time and temperature upon VTM performance. While most diagnostic protocols will not require replication competent virus, the use of high quality VTM will allow for the next phase of laboratory analysis in the COVID-19 pandemic, including drug and antibody susceptibility analysis of re-isolated SARS-CoV-2, and for the testing of vaccine escape mutants. [ABSTRACT FROM AUTHOR]
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- 2021
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14. Comparison of deferred and bedside culture of Neisseria gonorrhoeae: a study to improve the isolation of gonococci for antimicrobial susceptibility testing
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Iryna Boiko, Yuliia Stepas, and Inna Krynytska
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Neisseria gonorrhoeae ,Culture ,Transport media ,Antimicrobial susceptibility ,Microbiology ,QR1-502 - Abstract
Background and Objectives: Antimicrobial resistance of Neisseria gonorrhoeae is globally spread and threatening. Culturing of N. gonorrhoeae is the only method to collect live isolates for investigation antimicrobial resistance profile. Therefore, quality assessment of N. gonorrhoeae culture is essential for successful isolation of gonococci. This study was conducted to evaluate deferred and bedside culture of N. gonorrhoeae depending on the year season and temperature condition of transport media temporary storage. Materials and Methods: Urogenital swabs from 46 symptomatic heterosexual patients with gonorrhoea and subculture of N. gonorrhoeae in 46 suspensions in concentrations 1.5 × 108 CFU/ml were subjected to the study. Non-nutritive transporting medium Amies Agar Gel Medium with charcoal (Copan Diagnostics Inc., Brescia, Italy) was used for deferred culture and selective Chocolate agar TM+PolyViteX VCAT3 (BioMérieux, Marcy-l'Étoile, France) for both tested methods of culture. Results: The specificity of both bedside and deferred methods of culture was 100%. The sensitivity of deferred culture was higher than of bedside culture (82.6% vs 47.8%, p
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- 2020
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15. Comparison of deferred and bedside culture of Neisseria gonorrhoeae: a study to improve the isolation of gonococci for antimicrobial susceptibility testing.
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Boiko, Iryna, Stepas, Yuliia, and Krynytska, Inna
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NEISSERIA , *NEISSERIA gonorrhoeae , *MICROBIAL sensitivity tests , *DRUG resistance in microorganisms , *LANDSLIDES - Abstract
Background and Objectives: Antimicrobial resistance of Neisseria gonorrhoeae is globally spread and threatening. Culturing of N. gonorrhoeae is the only method to collect live isolates for investigation antimicrobial resistance profile. Therefore, quality assessment of N. gonorrhoeae culture is essential for successful isolation of gonococci. This study was conducted to evaluate deferred and bedside culture of N. gonorrhoeae depending on the year season and temperature condition of transport media temporary storage. Materials and Methods: Urogenital swabs from 46 symptomatic heterosexual patients with gonorrhoea and subculture of N. gonorrhoeae in 46 suspensions in concentrations 1.5 × 108 CFU/ml were subjected to the study. Non-nutritive transporting medium Amies Agar Gel Medium with charcoal (Copan Diagnostics Inc., Brescia, Italy) was used for deferred culture and selective Chocolate agar TM+PolyViteX VCAT3 (BioMérieux, Marcy-l'Étoile, France) for both tested methods of culture. Results: The specificity of both bedside and deferred methods of culture was 100%. The sensitivity of deferred culture was higher than of bedside culture (82.6% vs 47.8%, p<0.0005). Deferred culture showed significantly higher sensitivity comparing to bedside culture in summer (100% vs 50%, p=0.003), and comparably the same as for bedside culture in autumn, winter and spring. Conclusion: The viability of N. gonorrhoeae subcultures was significantly higher in refrigerated samples from transport media than from ambient one after exposition from 48 to 96 hours. Optimal viability of N. gonorrhoeae was observed when transport swabs were kept refrigerated up to 48 h (73.9-93.5%) or ambiently - up to 24 h (87%). Updating laboratory guidelines regarding sampling and timely specimen processing might improve gonococcal culture performance. [ABSTRACT FROM AUTHOR]
- Published
- 2020
16. Comparison of Siriraj liquid‐based solution and standard transport media for the detection of high‐risk human papillomavirus in cervical specimens.
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Jaishuen, Atthapon, Jareemit, Nida, Laiwejpithaya, Somsak, Viriyapak, Boonlert, Benjapibal, Mongkol, and Horthongkham, Navin
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Purpose: To evaluate the performance of Siriraj liquid‐based solution for human papillomavirus (HPV) DNA testing compared with standard transport media. Methods: This cross‐sectional study enrolled 217 women aged 30 years or older who attended for cervical cancer screening or had abnormal cervical cytology, or were diagnosed with cervical cancer at the Department of Obstetrics‐Gynecology, Siriraj Hospital from March 2015 to January 2016. We excluded patients with a history of any cervical procedures, hysterectomy, or previous treatment with pelvic irradiation or chemotherapy. Two cervical specimens were collected from each participant. The standard Cervi‐Collect Specimen Collection Kit was used to preserve the first sample, and Siriraj liquid‐based solution was used for the second one. All samples were sent for HPV DNA testing using the same standard high‐risk HPV assay. HPV test results were recorded and statistically analyzed. Results: The results showed agreement between standard transport media and Siriraj liquid‐based solution for HPV DNA testing, at a kappa value of 0.935 (P < 0.001). We found no discorrelation for the detection of HPV 16, which accounts for approximately 50% of cervical cancers. The relative sensitivity of Siriraj liquid‐based solution and standard transport media in patients with high‐grade cervical intraepithelial neoplasia or worse (CIN2+) is 98% (50/51). The relative specificity of Siriraj liquid‐based solution and standard transport media in patients with non‐CIN2+ is 98.1% (102/104). Conclusion: Siriraj liquid‐based solution showed almost perfect agreement with the standard transport media for HPV DNA testing. This solution, costing 2 to 3 times less than the commercially available standard media, may be an alternative option for HPV DNA testing. Highlights: Siriraj liquid‐based solution shows almost perfect agreement with standard media for human papillomavirus (HPV) test.Siriraj liquid‐based solution costs 2 to 3 times less than standard media.No discorrelation for HPV16 detection between Siriraj liquid‐based and standard media. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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17. Assessment of different storage conditions for Staphylococcus hyicus survival.
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Takeuti, Karine Ludwig, Bernardi, Mari Lourdes, Moreno, Andrea Micke, and de Barcellos, David Emilio Santos Neves
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STAPHYLOCOCCAL diseases , *PATHOGENIC microorganisms , *SURGICAL swabs , *BACTERIA , *MICROBIOLOGICAL assay - Abstract
Introduction: Collecting swabs from skin lesions for bacteriological examination is frequently performed to the diagnosis of exudative epidermitis. This method is fast and non-invasive, but it depends directly on the viability of bacteria in clinical samples, which can be influenced by storage and shipment temperatures and the time of transportation. The aim of this study was to assess the capacity of four commercial transport media and swabs with no transport medium to preserve Staphylococcus hyicus (S. hyicus) for up to 10 days at room temperature and under refrigeration. Methodology: Samples were stored in swabs with no transport medium and four transport media (Amies, Amies with charcoal, Cary Blair and Stuart) for 10 days at room temperature and under refrigeration. Swabs were plated in Tween 80 Agar and colonies counted. Results: Samples kept in transport media showed better performance (P < 0.05) under refrigeration. Storage under refrigeration in Amies medium showed better results than all other transport media and swabs (P < 0.05). Amies medium and swabs with no transport medium showed comparable results in room temperature (P > 0.05). In additional, refrigerated Amies medium and swabs with no transport medium at room temperature showed high performance for up to nine and three storage days, respectively. Conclusions: The recovery of S. hyicus in samples stored in Amies medium under refrigeration was higher when compared to other transport media. In addition, swabs with no transport medium could also be indicated when samples are stored at room temperature within three days. [ABSTRACT FROM AUTHOR]
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- 2018
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18. Optimal preparation of SARS-CoV-2 viral transport medium for culture
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Richard A. Strugnell, Nancy Wang, Claire Fraser, Damian F. J. Purcell, Elizabeth Trajcevska, Elena Paraskeva, Julie L. McAuley, Eric Bert, and Michelle Sait
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0301 basic medicine ,VTM ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Culture ,Short Report ,Biology ,Validation testing ,Replication competent virus ,Cell Line ,Specimen Handling ,lcsh:Infectious and parasitic diseases ,03 medical and health sciences ,COVID-19 Testing ,0302 clinical medicine ,Virology ,Chlorocebus aethiops ,Diagnosis ,Vaccine escape ,Animals ,Humans ,lcsh:RC109-216 ,030212 general & internal medicine ,Vero Cells ,Viral culture ,SARS-CoV-2 ,COVID-19 ,Anti-Bacterial Agents ,Culture Media ,030104 developmental biology ,Infectious Diseases ,Viral replication ,Viral Transport medium ,RNA, Viral ,Transport media - Abstract
Introduction The sudden arrival of the COVID-19 pandemic placed significant stresses on supply chains including viral transport medium (VTM). The VTM that was urgently required needed to support viral replication, as well as other routine diagnostic approaches. We describe the preparation and validation testing of VTM for rapidly expanding diagnostic testing, where the capacity of the VTM to preserve viral integrity, for culture, isolation and full sequence analysis, was maintained. Methods VTM was prepared using different methods of sterilization then ‘spiked’ with virus. The VTM was investigated using viral culture in Vero cells, and for nucleic acid detection by quantitative PCR. Results The best results were obtained by filter and autoclave-based sterilization. The VTM proved robust for culture-based analyses provided the inoculated VTM was stored at 4 °C, and tested within 48 h. The filtered VTM also supported PCR-based diagnosis for at least 5 days when the mock inoculated VTM was held at room temperature. Discussion The manual handling of VTM production, including filling and sterilization, was optimized. SARS-CoV-2 was spiked into VTM to assess different sterilization methods and measure the effects of storage time and temperature upon VTM performance. While most diagnostic protocols will not require replication competent virus, the use of high quality VTM will allow for the next phase of laboratory analysis in the COVID-19 pandemic, including drug and antibody susceptibility analysis of re-isolated SARS-CoV-2, and for the testing of vaccine escape mutants.
- Published
- 2021
19. The Effect of Propolis As A Biological Storage Media on Periodontal Ligament Cell Survival in An Avulsed Tooth: An In Vitro Study
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Leila Ahangari, Mandana Naseri, Fatemeh Dehghani, Zahra Yadegari, Samiye Alborzi, and Zohreh Ahangari
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Avulsed Tooth ,Periodontium ,Propolis ,Transport Media ,Medicine ,Science - Abstract
Objective: Both the length of extra-alveolar time and type of storage media are significant factors that can affect the long-term prognosis of replanted teeth. This study aims to compare propolis 50%, propolis 10%, Hank’s balanced salt solution (HBSS), milk and egg white on periodontal ligament (PDL) cell survival for different time points.Materials and Methods: In this in vitro experimental study, we divided 60 extracted teeth without any periodontal diseases into five experimental and two control groups that consisted each experimental group with 10 and each control group with 5 teeth. The storage times were one and three hours for each media. The controls corresponded to 0-minute (positive) and 12-hour (negative) dry time. Rinsing in the experimental media, the teeth were treated with dispase and collagenase for one hour. Cell viability was determined by using trypan blue exclusion. Statistical analysis of the data was accomplished by using two-way analysis of variance (ANOVA) complemented by the Tukey’s HSD post-hoc.Results: Within one hour, there was no significant difference between the two propolis groups, however these two groups had significantly more viable PDL cells compared to the other experimental media (p
- Published
- 2013
20. In vitro and in vivo comparison of transport media for detecting nasopharyngeal carriage of Streptococcus pneumoniae
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Anneke Steens, Natacha Milhano, Ingeborg S. Aaberge, and Didrik F. Vestrheim
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Streptococcus pneumoniae ,Nasopharyngeal carriage ,Transport media ,In vivo and in vitro comparison ,Carriage study ,Pneumococcus ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Background As a standard method for pneumococcal carriage studies, the World Health Organization recommends nasopharyngeal swabs be transported and stored at cool temperatures in a medium containing skim-milk, tryptone, glucose and glycerol (STGG). An enrichment broth used for transport at room temperature in three carriage studies performed in Norway may have a higher sensitivity than STGG. We therefore compared the media in vitro and in vivo. Methods For the in vitro component, three strains (serotype 4, 19F and 3) were suspended in STGG and enrichment broth. Recovery was compared using latex agglutination, quantification of bacterial loads by real-time PCR of the lytA gene, and counting colonies from incubated plates. For the in vivo comparison, paired swabs were obtained from 100 children and transported in STGG at cool temperatures or in enrichment broth at room temperature. Carriage was identified by latex agglutination and confirmed by Quellung reaction. Results In vitro, the cycle threshold values obtained by PCR did not differ between the two media (p = 0.853) and no clear difference in colony counts was apparent after incubation (p = 0.593). In vivo, pneumococci were recovered in 46% of swabs transported in STGG and 51% of those transported in enrichment broth (Kappa statistic 0.90, p = 0.063). Discussion Overall, no statistical differences in sensitivity were found between STGG and enrichment broth. Nevertheless, some serotype differences were observed and STGG appeared slightly less sensitive than enrichment broth for detection of nasopharyngeal carriage of pneumococci by culturing. We recommend the continued use of STGG for transport and storage of nasopharyngeal swabs in pneumococcal carriage studies for the benefit of comparability between studies and settings, including more resource-limited settings.
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- 2016
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21. Evaluation of an Environmental Transport Medium for Legionella pneumophila Recovery
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Maria Scaturro, Chiara Giubbi, Sergio Frugoni, Clementina Cocuzza, Santina Castriciano, Enrico Calaresu, F. Perdoni, Maria Luisa Ricci, Rosario Musumeci, Marianna Martinelli, Martinelli, M, Calaresu, E, Musumeci, R, Giubbi, C, Perdoni, F, Frugoni, S, Castriciano, S, Scaturro, M, Ricci, M, and Cocuzza, C
- Subjects
Chromatography ,Microbiological culture ,biology ,transport media ,Chemistry ,Legionella ,Legionella pneumophila ,Health, Toxicology and Mutagenesis ,culture method ,Public Health, Environmental and Occupational Health ,Biofilm ,biology.organism_classification ,Antimicrobial ,bacterial infections and mycoses ,ISO 11731:2017 ,Dilution ,respiratory tract diseases ,molecular detection ,Enumeration ,bacteria ,Medicine ,Bacteria - Abstract
The collection and storage of water-related matrices such as biofilm from collection to processing are critical for the detection of Legionella pneumophila by cultural and molecular tests. SRK™ is a liquid medium that acts both as an antimicrobial neutralizing agent and a transport medium for bacterial culture enumeration and is useful to maintain the stability of the sample from collection to analysis. The aims of this study were to evaluate Legionella pneumophila viability and bacterial nucleic acids’ stability in SRK™ medium over time at different storage conditions. Artificial bacterial inoculates with an approximate concentration of 104, 103 and 102 CFU/mL were made using Legionella pneumophila certified reference material suspended in SRK™ medium. Bacteria recovery was analyzed by cultural and molecular methods at time 0, 24 and 48 h at room temperature and at 0, 24, 48 and 72 h at 2–8 °C, respectively. SRK™ medium supported Legionella pneumophila culture viability with CFU counts within the expected range. The recovery after 72 h at 2–8 °C was 83–100% and 75–95% after 48 h at room temperature. Real-time PCR appropriately detected Legionella pneumophila DNA at each temperature condition, dilution and time point. Results demonstrated a good performance of SRK™ medium for the reliable recovery of environmental Legionella.
- Published
- 2021
22. Evaluation of an Environmental Transport Medium for
- Author
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Marianna, Martinelli, Enrico, Calaresu, Rosario, Musumeci, Chiara, Giubbi, Federica, Perdoni, Sergio, Frugoni, Santina, Castriciano, Maria, Scaturro, Maria Luisa, Ricci, and Clementina E, Cocuzza
- Subjects
molecular detection ,transport media ,culture method ,bacteria ,Legionella ,bacterial infections and mycoses ,Real-Time Polymerase Chain Reaction ,Water Microbiology ,ISO 11731:2017 ,Article ,respiratory tract diseases ,Culture Media ,Legionella pneumophila - Abstract
The collection and storage of water-related matrices such as biofilm from collection to processing are critical for the detection of Legionella pneumophila by cultural and molecular tests. SRK™ is a liquid medium that acts both as an antimicrobial neutralizing agent and a transport medium for bacterial culture enumeration and is useful to maintain the stability of the sample from collection to analysis. The aims of this study were to evaluate Legionella pneumophila viability and bacterial nucleic acids’ stability in SRK™ medium over time at different storage conditions. Artificial bacterial inoculates with an approximate concentration of 104, 103 and 102 CFU/mL were made using Legionella pneumophila certified reference material suspended in SRK™ medium. Bacteria recovery was analyzed by cultural and molecular methods at time 0, 24 and 48 h at room temperature and at 0, 24, 48 and 72 h at 2–8 °C, respectively. SRK™ medium supported Legionella pneumophila culture viability with CFU counts within the expected range. The recovery after 72 h at 2–8 °C was 83–100% and 75–95% after 48 h at room temperature. Real-time PCR appropriately detected Legionella pneumophila DNA at each temperature condition, dilution and time point. Results demonstrated a good performance of SRK™ medium for the reliable recovery of environmental Legionella.
- Published
- 2021
23. Performance evaluation of Puritan® universal transport system (UniTranz-RT™) for preservation and transport of clinical viruses.
- Author
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Brasel, Trevor, Madhusudhan, Kunapuli T., Agans, Krystle, Dearen, Karen, Jones, Sara L., and Sherwood, Robert L.
- Abstract
The ability of a non-propagating microbial transport medium to maintain the viability of clinically relevant viruses was compared to a similar commercial medium to establish performance equivalence. Two dilutions of stock of test viruses, namely adenovirus (AdV), cytomegalovirus (CMV), echovirus Type 30 (EV), herpes simplex virus (HSV) types 1 and 2, influenza A, parainfluenza 3 (PIV), respiratory syncytial virus (RSV), and varicella zoster virus (VZV), were spiked into Puritan® Medical Products Company Universal Transport System (UniTranz-RT™) and BD
TM Universal Viral Transport System (UVT) and incubated at 4 °C and room temperature (RT) for up to 72 hr. Post incubation assessment of recovery of AdV, EV, HSV-2, PIV, and VZV from UniTranz-RT™ and UVT using shell vial assays followed by immunofluorescence staining demonstrated statistically significant differences between both transport media. In general, significantly higher recoveries of AdV, EV, and VZV were found from UniTranz-RT™ than UVT whereas HSV-2 and PIV were recovered better from UVT than UniTranz-RT™, under specific test conditions. The recovery of HSV-1, influenza A, PIV, and RSV showed no significant differences between transport media. Sulforhodamine B-based assay analysis of UniTranz-RT™ lots prior to and at expiration exhibited no cytotoxicity. The overall results of the study validate the full performance of UniTranz-RT™ as a viral transport medium and establish its effectiveness on par with the UVT. J. Med. Virol. 87:1796-1805, 2015. © 2015 Wiley Periodicals, Inc. [ABSTRACT FROM AUTHOR]- Published
- 2015
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24. Comparison of transport media for the isolation and detection of Brachyspira hyodysenteriae.
- Author
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Se-Ji Cho, Jong Wan Kim, Ha-Young Kim, Sang-Ik Oh, So Jeong Jeong, Ji-A Jung, Ara Cho, Myoung-Heon Lee, Ho-Seong Cho, and Jae-Won Byun
- Abstract
Brachyspira (B.) hyodysenteriae is a causative agent of swine dysentery that is responsible for death and economic losses in the pig industry. It is imperative that clinical samples be delivered fresh for accurate diagnosis. The viability and DNA detection of B. hyodysenteriae using lab-made (phosphate buffered saline and modified tryptic soy broth) or commercial transport media (C, D, and E) were compared by culturing and real-time PCR at 4oC or room temperature (RT), respectively. B. hyodysenteriae grown in D (Anaerobe Systems, USA) and E (Starplex Scientific, Canada) media was viable for 4 days at 4oC and RT. However, B. hyodysenteriae in A, B, and C (culture swab; BD Biosciences, USA) media were not recovered after 2 days at RT. Ct values for real-time PCR at 4oC and RT ranged from 27.2 ± 2.1 (C) to 29.6 ± 0.5 (B), and 28.0 ± 0.9 (E) to 30.2 ± 1.5 (B), respectively. Considering the field conditions, it is important that transport media is used for specimen isolation and PCR to obtain an accurate diagnosis of swine dysentery. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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25. ‘All in a box’ a concept for optimizing microbiological diagnostic sampling in prosthetic joint infections.
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Larsen, Lone Heimann, Yijuan Xu, Simonsen, Ole, Pedersen, Christian, Schønheyder, Henrik C., and Thomsen, Trine Rolighed
- Abstract
Background: Accurate microbial diagnosis is crucial for effective management of prosthetic joint infections. Culturing of multiple intraoperative tissue samples has increased diagnostic accuracy, but new preparatory techniques and molecular methods hold promise of further improvement. The increased complexity of sampling is, however, a tough challenge for surgeons and assistants in the operation theatre, and therefore we devised and tested a new concept of pre-packed boxes with a complete assortment of swabs, vials and additional tools needed in the operating theatre for non-standard samples during a clinical study of prosthetic joint infections. Findings: The protocol for the clinical study required triplicate samples of joint fluid, periprosthetic tissue, bone tissue, and swabs from the surface of the prosthesis. Separate boxes were prepared for percutaneous joint puncture and surgical revision; the latter included containers for prosthetic components or the entire prosthesis. During a 2-year project period 164 boxes were used by the surgeons, 98 of which contained a complete set of samples. In all, 1508 (89%) of 1685 scheduled samples were received. Conclusion: With this concept a high level of completeness of sample sets was achieved and thus secured a valid basis for evaluation of new diagnostics. Although enthusiasm for the project may have been a contributing factor, the extended project period suggests that the ‘All in a box’ concept is equally applicable in routine clinical settings with standardized but complex diagnostic sampling. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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26. Evaluation of swabs and transport media for the recovery of Yersinia pestis.
- Author
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Gilbert, Sarah E., Rose, Laura J., Howard, Michele, Bradley, Meranda D., Shah, Sanjiv, Silvestri, Erin, Schaefer, Frank W., and Noble-Wang, Judith
- Subjects
- *
SURGICAL swabs , *YERSINIA pestis , *BACILLUS anthracis , *MICROBIAL contamination , *GOVERNMENT accountability , *KNOWLEDGE gap theory , *ENVIRONMENTAL sampling - Abstract
Abstract: The Government Accountability Office report investigating the surface sampling methods used during the 2001 mail contamination with Bacillus anthracis brought to light certain knowledge gaps that existed regarding environmental sampling with biothreat agents. Should a contamination event occur that involves non-spore forming biological select agents, such as Yersinia pestis, surface sample collection and processing protocols specific for these organisms will be needed. Two Y. pestis strains (virulent and avirulent), four swab types (polyester, macrofoam, rayon, and cotton), two pre-moistening solutions, six transport media, three temperatures, two levels of organic load, and four processing methods (vortexing, sonicating, combined sonicating and vortexing, no agitation) were evaluated to determine the conditions that would yield the highest percent of cultivable Y. pestis cells after storage. The optimum pre-moistening agent/transport media combination varied with the Y. pestis strain and swab type. Directly inoculated macrofoam swabs released the highest percent of cells into solution (93.9% recovered by culture) and rayon swabs were considered the second best swab option (77.0% recovered by culture). Storage at 4°C was found to be optimum for all storage times and transport media. In a worst case scenario, where the Y. pestis strain is not known and sample processing and analyses could not occur until 72h after sampling, macrofoam swabs pre-moistened with PBS supplemented with 0.05% Triton X-100 (PBSTX), stored at 4°C in neutralizing buffer (NB) as a transport medium (PBSTX/NB) or pre-moistened with NB and stored in PBSTX as a transport medium (NB/PBSTX), then vortexed 3min in the transport medium, performed significantly better than all other conditions for macrofoam swabs, regardless of strain tested (mean 12 – 72h recovery of 85.9–105.1%, p <0.001). In the same scenario, two combinations of pre-moistening medium/transport medium were found to be optimal for rayon swabs stored at 4°C (p <0.001), then sonicated 3min in the transport medium; PBSTX/PBSTX and NB/PBSTX (mean 12–72h recovery of 83.7–110.1%). [Copyright &y& Elsevier]
- Published
- 2014
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27. Stability of SARS-CoV-2 in Phosphate-Buffered Saline for Molecular Detection
- Author
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Meei-Li Huang, Alexander L. Greninger, Garrett A. Perchetti, Vikas Peddu, and Keith R. Jerome
- Subjects
0301 basic medicine ,Microbiology (medical) ,2019-20 coronavirus outbreak ,transport media ,viruses ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,030106 microbiology ,coronavirus ,Buffers ,medicine.disease_cause ,Specimen Handling ,Microbiology ,Betacoronavirus ,03 medical and health sciences ,COVID-19 Testing ,0302 clinical medicine ,Viral genetics ,refrigeration ,medicine ,030212 general & internal medicine ,PBS ,Letter to the Editor ,Coronavirus ,Microbial Viability ,biology ,Special Issue ,SARS-CoV-2 ,Clinical Laboratory Techniques ,Chemistry ,Phosphate buffered saline ,specimen stability ,COVID-19 ,RNA ,biology.organism_classification ,molecular detection ,RNA, Viral ,Saline Solution ,Coronavirus Infections - Abstract
RNA viruses often require “cold-chains” of transportation to prevent the breakdown of genetic material.…
- Published
- 2020
28. Evaluation of Transport Media and Specimen Transport Conditions for the Detection of SARS-CoV-2 by Use of Real-Time Reverse Transcription-PCR
- Author
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Amy A. Rogers, Hollis J. Batterman, Elizabeth M. Marlowe, Ron M. Kagan, Gwynngelle A. Borillo, Russell E. Baumann, and Marzena M. Galdzicka
- Subjects
0301 basic medicine ,Microbiology (medical) ,Coronavirus disease 2019 (COVID-19) ,transport media ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,viruses ,030106 microbiology ,Pneumonia, Viral ,Economic shortage ,Biology ,medicine.disease_cause ,Microbiology ,Specimen Handling ,03 medical and health sciences ,Betacoronavirus ,0302 clinical medicine ,COVID-19 Testing ,Laboratory Chemicals ,Virology ,medicine ,Humans ,030212 general & internal medicine ,Pandemics ,Coronavirus ,Cycle threshold ,medicine.diagnostic_test ,Clinical Laboratory Techniques ,Reverse Transcriptase Polymerase Chain Reaction ,SARS-CoV-2 ,Special Issue ,Temperature ,COVID-19 ,respiratory system ,RNA stability ,transport conditions ,respiratory tract diseases ,Reverse transcription polymerase chain reaction ,Bronchoalveolar lavage ,Sputum ,medicine.symptom ,Coronavirus Infections - Abstract
The global coronavirus (CoV) disease 2019 (COVID-19) pandemic has resulted in a worldwide shortage of viral transport media and raised questions about specimen stability. The objective of this study was to determine the stability of severe acute respiratory syndrome CoV 2 (SARS-CoV-2) RNA in specimen transport media under various storage conditions. Transport media tested included UTM, UTM-RT, ESwab, M4, and saline (0.9% NaCl). Specimen types tested included nasopharyngeal/oropharyngeal swabs in the above-named transport media, bronchoalveolar lavage (BAL) fluid, and sputum., The global coronavirus (CoV) disease 2019 (COVID-19) pandemic has resulted in a worldwide shortage of viral transport media and raised questions about specimen stability. The objective of this study was to determine the stability of severe acute respiratory syndrome CoV 2 (SARS-CoV-2) RNA in specimen transport media under various storage conditions. Transport media tested included UTM, UTM-RT, ESwab, M4, and saline (0.9% NaCl). Specimen types tested included nasopharyngeal/oropharyngeal swabs in the above-named transport media, bronchoalveolar lavage (BAL) fluid, and sputum. A high-titer SARS-CoV-2 remnant patient specimen was spiked into pooled SARS-CoV-2 RNA-negative specimen remnants for the various medium types. Aliquots of samples were stored at 18°C to 26°C, 2°C to 8°C, and −10°C to −30°C and then tested at time points up to 14 days. Specimens consistently yielded amplifiable RNA with mean cycle threshold differences of
- Published
- 2020
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29. Comparative analysis of transport media for isolating Shigella
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Murad Lesmana, Oktavianus Ch. Salim, Elly Herwana, Paul Bukitwetan, and Julius E Surjawidjaja
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Transport media ,Shigella ,isolation ,Medicine - Abstract
Transport media for Shigella include buffered glycerol saline (BGS), and Cary-Blair (CB). However being a liquid medium BGS may leak or spill during transport and thus may cause contamination. The other concern is the 30% concentration of glycerol in the BGS which may be inhibitory to some susceptible Shigella species. This study was conducted to determine the best and safe transport media for Shigella. Rectal swab samples were obtained from 289 dysenteric patients and transported to the laboratory in Cary-Blair (CB) transport medium, standard buffered glycerol saline (BGS), BGS with the addition of 0.5% agar (BGS-A), and BGS with the addition of 0.5% agar and reduced glycerol to 15% (BGS-M). Recovery rates between CB, BGS, BGS-A and BGS-M and their combinations were compared. The overall prevalence of Shigella recovered from any of the four tubes was 24.9% (72/289). CB and BGS-M recovered Shigella in 54 out of 289 patients (18.7%), CB and BGS-A in 50 (17.3%), and CB and BGS in 49 (17.0%), while CB, BGS, BGS-A, and BGS-M alone gave positive Shigella in 30 (10,4%), 29 (10.0%), 34 (11.8%) and 46 (15.9%), respectively. This study suggests that a minor modification to the BGS raised the recovery rate of Shigella.
- Published
- 2008
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30. The Effect of Propolis as A Biological Storage Media on Periodontal Ligament Cell Survival in An Avulsed Tooth: An In Vitro Study.
- Author
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Ahangari, Zohreh, Alborzi, Samiye, Yadegari, Zahra, Dehghani, Fatemeh, Ahangari, Leila, and Naseri, Mandana
- Subjects
- *
PROPOLIS , *PERIODONTAL ligament , *CELLS , *DENTAL pathology , *PHYSIOLOGIC salines , *EGG whites , *COLLAGENASES , *MILK - Abstract
Objective: Both the length of extra-alveolar time and type of storage media are significant factors that can affect the long-term prognosis of replanted teeth. This study aims to compare propolis 50%, propolis 10%, Hank's balanced salt solution (HBSS), milk and egg white on periodontal ligament (PDL) cell survival for different time points. Materials and Methods: In this in vitro experimental study, we divided 60 extracted teeth without any periodontal diseases into five experimental and two control groups that consisted each experimental group with 10 and each control group with 5 teeth. The storage times were one and three hours for each media. The controls corresponded to 0-minute (positive) and 12-hour (negative) dry time. Rinsing in the experimental media, the teeth were treated with dispase and collagenase for one hour. Cell viability was determined by using trypan blue exclusion. Statistical analysis of the data was accomplished by using two-way analysis of variance (ANOVA) complemented by the Tukey's HSD post-hoc. Results: Within one hour, there was no significant difference between the two propolis groups, however these two groups had significantly more viable PDL cells compared to the other experimental media (p<0.05). The results of the three-hour group showed that propolis 10% was significantly better than egg white, whereas both propolis 10% and 50% were significantly better than milk (p<0.05). Conclusion: Based on PDL cell viability, propolis could be recommended as a suitable biological storage media for avulsed teeth. [ABSTRACT FROM AUTHOR]
- Published
- 2013
31. Effectiveness of using liquid transport media in bacteriological diagnostics of diphtheria infection.
- Author
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Gadua NT, Pimenova AS, Borisova OY, Mironov AY, and Afanasiev SS
- Subjects
- Corynebacterium, Culture Media, Humans, Specimen Handling, Corynebacterium diphtheriae, Diphtheria diagnosis
- Abstract
The results of evaluating the effectiveness of the use of liquid transport media at the preanalytical stage of bacteriological diagnosis of diphtheria infection are presented. A typical toxigenic strain of C. diphtheriae biovar gravis № 665 was used. The experiments were carried out using a laboratory-prepared medium based on GRM-broth (State research center for applied biotechnology and microbiology, Obolensk), a transport system with a fleecy probe swab (DELTALAB) and a transport system ∑-Transwab ® with a polyurethane Sigma-swab (Medical Wire & Equipment Co. (Bath) Ltd.). The tampons were pooled with a 24-hour bacterial culture of C. diphtheriae, then immediately seeded on Tellurite-containing blood agar. Storage conditions were simulated for 6-24 hours: at room conditions +(20-25)° C, in the refrigerator +(4-8)° C, in a thermostat +(37±1)° C. Storage of C. diphtheriae was most optimal on two liquid transport systems in a refrigerator +(4-8)° C for 6 and 24 hours; in room conditions +(20-25)° C - there was a decrease in seeding after 6 hours and loss of pathological material after 24 hours, more pronounced on a fleecy probe swab; under thermostat conditions +(37±1)° C on both transport systems, a decrease in seeding was noted after 6 hours and a complete loss of pathological material after 24 hours. The results obtained demonstrated the efficiency of using the Amies liquid transport medium and justify the need to develop a domestic analogue of the transport system based on the Amies liquid medium for the bacteriological diagnosis of diphtheria infection., Competing Interests: The authors declare no conflict of interest.
- Published
- 2022
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32. Transport media for avulsed teeth: A review.
- Author
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Udoye, Christopher I., Jafarzadeh, Hamid, and Abbott, Paul V.
- Subjects
DENTAL pulp cavities ,NECROSIS microbiology ,ANKYLOSIS ,ENDODONTICS ,ROOT canal treatment ,EQUIPMENT & supplies ,DISEASE risk factors - Abstract
Management protocols for avulsed teeth should include management of the pulp and periodontal ligament (PDL) cells in order to improve the long-term prognosis and survival of these teeth. The use of an inappropriate transport or storage medium potentially increases the risk of PDL cell necrosis, which can result in ankylosis and replacement resorption of the tooth root. Considering the critical role of these media, an informed choice of a suitable medium is essential for a favourable outcome. The literature regarding transport media for avulsed teeth was reviewed using PubMed/MEDLINE up to February 2010. This review outlines the common storage media that are available and highlights their specific features or problems. Although HBSS, ViaSpan and Eagle's medium have great potential to maintain the PDL cells in a viable state after avulsion, the practicalities of using these solutions, the costs and the lack of ready availability to the general public make them less than ideal. Milk remains the most convenient, cheapest and readily available solution in most situations while also being capable of keeping PDL cells alive. Hence, milk remains the storage medium of choice for avulsed teeth that cannot be replanted immediately or very soon after the avulsion. [ABSTRACT FROM AUTHOR]
- Published
- 2012
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33. Evaluation of Various Strategies for Isolation and Culturing of Helicobacter pylori.
- Author
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Mehmood, Khalid, Shoukat, Saleeta, Hameed, Zobia, Hussain, Masroor, Ahmed, Safia, Shah, Aamer Ali, Hameed, Abdul, and Hasan, Fariha
- Abstract
The article highlights a study which investigated different strategies for isolation and culturing of Helicobacter pylori, a human gastric pathogen. The study found that normal saline and Brain Heart infusion (BHI) broth are both effective as transport media. The best selective medium for isolation of H. pylori was Columbia blood agar (CBA) supplemented with commercial antibiotic. When biopsy samples from dyspeptic patients were cultured within two hours of sampling, the rate of isolation was found to be higher.
- Published
- 2011
34. Optimizing methods in immunocytochemistry: one laboratory's experience.
- Author
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Valli, Victor, Peters, Elisabeth, Williams, Cara, Shipp, Lisa, Barger, Anne, Chladny, Jane, and Hoffmann, Walter
- Subjects
IMMUNOCYTOCHEMISTRY ,CYTODIAGNOSIS ,ENDOCRINE diseases ,IMMUNOHISTOCHEMISTRY techniques ,CELLS ,IMMUNOGLOBULINS ,EPITOPES ,PRESERVATION of organs, tissues, etc. ,STAINS & staining (Microscopy) - Abstract
The addition of immunocytochemical staining procedures to a diagnostic cytology service enables greater specificity of interpretation for many common disease conditions, especially neoplastic diseases. However, well-tested immunohistochemical techniques may require modification for cytologic specimens, and other considerations are necessary when working with air-dried cells. In this article, we describe our experience in evaluating options for sample transport and handling, and discuss methods for obtaining control cells from a variety of tissues for use in immunocytochemical staining. Important immunocytochemical principles and techniques, including fixation, antigen retrieval, and use of primary and secondary antibodies in manual and automated staining systems are described as used in our laboratory for cytologic specimens. Although we emphasize methods relevant to diagnostic laboratories receiving samples from external clients, the information is also applicable to any laboratory interested in adding or enhancing immunocytochemical services. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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35. Screening protocols for group B streptococcus: are transport media appropriate?
- Author
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Teese, Nicolette, Henessey, Daneeta, Pearce, Christopher, Kelly, Nigel, and Garland, Suzanne
- Subjects
- *
STREPTOCOCCUS , *STREPTOCOCCACEAE , *INJECTIONS , *MEDICAL research , *CLINICAL trials , *EXPERIMENTAL medicine - Abstract
Objective: To evaluate group B streptococcus (GBS) detection in an in vitro setting, using a low and controlled inoculum from swabs directly inoculated into a selective medium, as compared to delayed inoculation following a period in a commercial Amies transport medium with charcoal (Venturi Transystem™ Copan, Italy). Study design: Clinical isolates of GBS (n = 103), were inoculated into the Amies transport medium with charcoal in a concentration of 100 colony-forming units (cfu)/ml (10 cfu/swab). Swabs were then transferred to an enrichment broth (NPC) at time intervals of 0, 2, 4, 6 and 24 hours. Broths were then incubated for 18-24 hours at 35°C in air, before being transferred to New Granada Medium Modified (NGM) for CBS detection and incubated for a further 18-24 hours at 35°C in air. If the characteristic orange pigmented colonies were observed after this period, the specimen was recorded as + (1-10 colonies) or + + (more than 10 colonies). Results: Overall 92.2% (95/103) of isolates were detected in all tubes and at all times. An additional two isolates were non-hemolytic, non-pigment forming GBS. Of note, 3.9% (4/103) were negative until 2 hours delayed inoculation and 1.9% (2/103) gave inconsistent results, likely due to the low inoculum used. Conclusion: Delayed inoculation into selective enrichment broth following a period in transport medium, even with a low inoculum, gave a similar and acceptable GBS detection rate to direct inoculation. Hence, Amies transport medium with charcoal is an appropriate transport medium to use, where it is not practical for clinical specimens to be directly inoculated into selective enrichment broth and as endorsed in the Centers for Diseases Control (CDC) Guidelines, 2002. [ABSTRACT FROM AUTHOR]
- Published
- 2003
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36. Elementary stream management in MPEG-4.
- Author
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Herpel, Carsten
- Subjects
- *
MPEG (Video coding standard) , *VIDEO compression standards , *STREAMING technology , *DECODERS (Electronics) , *DECODERS & decoding - Abstract
The forthcoming MPEG-4 standard specifies in its systems part an audiovisual scene description and functionality for the elementary stream management. The elementary stream management functionality is introduced. It consists of a media object description framework that describes the streaming resources that form part of an MPEG-4 presentation and of a synchronization syntax incorporated in a flexible sync layer with an underlying systems decoder model. The final section outlines the transport and session setup for MPEG-4 presentations on relevant transport media, namely, the Internet and in digital broadcast scenarios [ABSTRACT FROM PUBLISHER]
- Published
- 1999
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37. Survival in transport media of <em>Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis</em> and <em>Prevotella intermedia</em> in human subgingival samples.
- Author
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van Steenbergen, T. J. M., Petit, M. D. A., Tijhof, C. J., van Winkelhoff, A. J., van der Velden, U., and de Graaff, J.
- Subjects
- *
PATHOGENIC microorganisms , *PERIODONTAL disease , *ACTINOBACILLUS , *STREPTOCOCCUS , *BACTERIA , *PERIODONTITIS - Abstract
The purpose of this study was to evaluate the survival in 3 transport media of 3 suspected periodontal pathogens, Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis and Prevotella intermedia. Subgingival samples were taken from 10 patients with severe periodontitis, all harboring at least two of the above- mentioned species. The material was dispersed and aliquots were added to vials containing reduced transport fluid, reduced transport fluid containing 10% Fildes extract, or viability-maintaining microbiostatic medium, anaerobically pre- pared (VMGA Ill). Viable counts were determined after 1, 2, 4, 24 and 48 h of storage at 4°C or at room temperature. The results showed that, for up to 4 h of storage, no significant differences existed for all parameters tested. A large increase of the total viable counts was found in VMGA III at room temperature after 24 and 48 h. This was due to an outgrowth of mainly streptococci. Incubation at 4°C yielded often a significantly higher recovery compared to room temperature. After storage at room temperature, the tested bacteria were below detection level in some samples. [ABSTRACT FROM AUTHOR]
- Published
- 1993
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38. Preserving the motility of microorganisms.
- Author
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Petit, M. D. A., Van der Velden, U., Van Winkelhoff, A. J., and De Graaff, J.
- Subjects
- *
MOTILITY of microorganisms , *PHASE-contrast microscopes , *SAMPLING (Process) , *TUBERCULIN , *FLUIDS , *SYRINGES - Abstract
This study focused on several factors that may influence the percentage of motile microorganisms in a sample from the tongue determined using a phase-contrast microscope. It was found that the time elapsing between sampling and analysis is crucially important. In both sterile saline and reduced transport fluid (RTF), a reduction of the percentage of motile microorganisms was found within 15-30 min after sampling respectively. In order to be able to prolong the time interval between sampling and analysis, it was found that storing a sample in a tuberculin syringe with RTF supplemented with Fildes extract preserved the motility of the microorganisms and gave no significant reduction in the percentage of motiles within 48 h. [ABSTRACT FROM AUTHOR]
- Published
- 1991
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- View/download PDF
39. Evaluation of Culture Top transport systems for assessing the bacterial diversity of microbiota by culturomics as compared to a routine transport system.
- Author
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Cassir N, Belkacemi S, Ballouche M, Khelaifia S, and La Scola B
- Subjects
- Humans, Metagenomics methods, Bacteria isolation & purification, Culture Media, Gastrointestinal Microbiome, Specimen Handling methods
- Abstract
In recent years, metagenomics and then culturomics, which consists of the multiplication of media and culture conditions and the rapid identification of all bacterial colonies, have generated renewed interest in the human microbiota, and diseases associated with modifications in its composition in particular. The sample transport media included in diverse swab transport systems and the storage conditions are among the factors that influence the results of the culturomics. In this study, we compared the results of culturomics from paired skin, oral and rectal swabs from intensive care unit (ICU) patients using Culture Top sample transport medium as compared to our routine one. From 152 clinical samples, we were able to isolate and identify 45 600 colonies, belonging to 338 different bacterial species. The transport system Culture Top identified 282 different bacterial species, while 244 were identified by our routine system. Of these, 188 different bacterial species were commonly identified using both transport systems, while 94 (27.8 %) and 56 (16.5 %) were only identified using Culture Top and our routine system, respectively ( P <0.001), but there was no significant difference in bacterial diversity at the genus or phylum level, or in terms of their type of respiration and cell wall. In conclusion, the Culture Top transport system appears to be complementary to our routine system, although it seems slightly superior in terms of isolated bacterial species.
- Published
- 2021
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40. Evaluation of an Environmental Transport Medium for Legionella pneumophila Recovery.
- Author
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Martinelli M, Calaresu E, Musumeci R, Giubbi C, Perdoni F, Frugoni S, Castriciano S, Scaturro M, Ricci ML, and Cocuzza CE
- Subjects
- Culture Media, Real-Time Polymerase Chain Reaction, Water Microbiology, Legionella genetics, Legionella pneumophila genetics
- Abstract
The collection and storage of water-related matrices such as biofilm from collection to processing are critical for the detection of Legionella pneumophila by cultural and molecular tests. SRK™ is a liquid medium that acts both as an antimicrobial neutralizing agent and a transport medium for bacterial culture enumeration and is useful to maintain the stability of the sample from collection to analysis. The aims of this study were to evaluate Legionella pneumophila viability and bacterial nucleic acids' stability in SRK™ medium over time at different storage conditions. Artificial bacterial inoculates with an approximate concentration of 10
4 , 103 and 102 CFU/mL were made using Legionella pneumophila certified reference material suspended in SRK™ medium. Bacteria recovery was analyzed by cultural and molecular methods at time 0, 24 and 48 h at room temperature and at 0, 24, 48 and 72 h at 2-8 °C, respectively. SRK™ medium supported Legionella pneumophila culture viability with CFU counts within the expected range. The recovery after 72 h at 2-8 °C was 83-100% and 75-95% after 48 h at room temperature. Real-time PCR appropriately detected Legionella pneumophila DNA at each temperature condition, dilution and time point. Results demonstrated a good performance of SRK™ medium for the reliable recovery of environmental Legionella .- Published
- 2021
- Full Text
- View/download PDF
41. Comparison of Coconut Water, Propolis, HBSS, and Milk on PDL Cell Survival.
- Author
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Gopikrishna, Velayutham, Baweja, Parvinder Singh, Venkateshbabu, Nagendrababu, Thomas, Toby, and Kandaswamy, Deivanayagam
- Subjects
TEETH ,DENTISTRY ,PERIODONTIUM ,ALVEOLAR process - Abstract
Abstract: Coconut water is biologically pure and sterile, with a rich presence of amino acids, proteins, vitamins, and minerals. The purpose of this study was to use a collagenase-dispase assay to investigate the potential of a new storage medium, coconut water, in comparison with propolis, Hank''s balanced salt solution (HBSS), and milk in maintaining viable periodontal ligament (PDL) cells on simulated avulsed teeth. Seventy freshly extracted human teeth were divided into 4 experimental groups and 2 control groups. The positive and negative controls corresponded to 0-minute and 8-hour dry times, respectively. The experimental teeth were stored dry for 30 minutes and then immersed in 1 of the 4 media (coconut water, propolis, HBSS, and milk). The teeth were then treated with dispase grade II and collagenase for 30 minutes. The number of viable PDL cells was counted with a hemocytometer and analyzed. Statistical analysis showed that coconut water kept significantly more PDL cells viable compared with propolis, HBSS, or milk. Coconut water can be used as a superior transport medium for avulsed teeth. [Copyright &y& Elsevier]
- Published
- 2008
- Full Text
- View/download PDF
42. Microbial Characteristics of Peri-Implantitis: A Case-Control Study
- Author
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Edwin Winkel, H V L C Eijsbouts, Y. C. M. de Waal, A. J. van Winkelhoff, Personalized Healthcare Technology (PHT), and Microbes in Health and Disease (MHD)
- Subjects
0301 basic medicine ,Male ,Peri-implantitis ,Dentistry ,Logistic regression ,Prevotella intermedia ,DOUBLE-BLIND ,0302 clinical medicine ,Risk Factors ,Tannerella forsythia ,Medicine ,ADJACENT TEETH ,Aged, 80 and over ,biology ,Middle Aged ,MOUTH TOOTH EXTRACTION ,ANAEROBIC CULTURE ,Periodontics ,Female ,PARTIALLY EDENTULOUS PATIENTS ,Porphyromonas gingivalis ,periodontal diseases ,Adult ,HOST RESPONSE ,030106 microbiology ,CONTROLLED-TRIAL ,03 medical and health sciences ,PERIODONTAL PATHOGENS ,dental implants ,Humans ,Aged ,Bacteria ,Fusobacterium nucleatum ,business.industry ,microbiology ,Case-control study ,030206 dentistry ,biology.organism_classification ,Peri-Implantitis ,infection ,stomatognathic diseases ,Case-Control Studies ,Implant ,business ,TRANSPORT MEDIA ,ACTINOBACILLUS-ACTINOMYCETEMCOMITANS - Abstract
BACKGROUND: Aim of this case-control study was to compare oral microbiological characteristics of subjects with healthy peri-implant conditions and subjects with peri-implantitis and to explore the influence of various patient-related and implant-related factors on the microbiological characteristics.METHODS: Peri-implant submucosal microbial samples were collected from 85 patients with peri-implantitis (cases) and from 69 patients with only implants with healthy peri-implant conditions (controls). Samples were analyzed using culturing techniques. Multivariable logistic regression was used to explore the association of disease status and various patient- and implant-related factors (gender, patient age, smoking, number of remaining teeth, percentage of teeth with bone loss, implant function time, implant surface and presence of plaque) with microbiological characteristics.RESULTS: Peri-implant disease status was significantly associated with the submucosal presence of P. gingivalis, P. intermedia, T. forsythia, and F. nucleatum. The association with disease status was most obvious for P. intermedia (OR 15.1, 95% CI [5.1, 45.3]) and T. forsythia (OR 13.3, 95% CI [5.4, 32.5]). The prevalence of A. actinomycetemcomitans and Staphylococcus species was very low.CONCLUSIONS: The periodontal pathogens P. gingivalis, P. intermedia, T. forsythia and F. nucleatum are associated with peri-implantitis. A. actinomycetemcomitans and Staphylococcus species do not seem to play an important role in peri-implantitis.
- Published
- 2016
43. In vitro and in vivo comparison of transport media for detecting nasopharyngeal carriage of Streptococcus pneumoniae
- Author
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Natacha Milhano, Ingeborg S. Aaberge, Anneke Steens, and Didrik F. Vestrheim
- Subjects
0301 basic medicine ,Serotype ,030106 microbiology ,lcsh:Medicine ,medicine.disease_cause ,Microbiology ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,In vivo ,Streptococcus pneumoniae ,Nasopharyngeal carriage ,Medicine ,030212 general & internal medicine ,Incubation ,business.industry ,General Neuroscience ,lcsh:R ,Pneumococcus ,General Medicine ,Latex fixation test ,Infectious Diseases ,Carriage ,chemistry ,Tryptone ,In vivo and in vitro comparison ,Quellung reaction ,General Agricultural and Biological Sciences ,business ,Transport media ,Carriage study - Abstract
BackgroundAs a standard method for pneumococcal carriage studies, the World Health Organization recommends nasopharyngeal swabs be transported and stored at cool temperatures in a medium containing skim-milk, tryptone, glucose and glycerol (STGG). An enrichment broth used for transport at room temperature in three carriage studies performed in Norway may have a higher sensitivity than STGG. We therefore compared the mediain vitroandin vivo.MethodsFor thein vitrocomponent, three strains (serotype 4, 19F and 3) were suspended in STGG and enrichment broth. Recovery was compared using latex agglutination, quantification of bacterial loads by real-time PCR of thelytAgene, and counting colonies from incubated plates. For thein vivocomparison, paired swabs were obtained from 100 children and transported in STGG at cool temperatures or in enrichment broth at room temperature. Carriage was identified by latex agglutination and confirmed by Quellung reaction.ResultsIn vitro, the cycle threshold values obtained by PCR did not differ between the two media (p= 0.853) and no clear difference in colony counts was apparent after incubation (p= 0.593).In vivo, pneumococci were recovered in 46% of swabs transported in STGG and 51% of those transported in enrichment broth (Kappa statistic 0.90,p= 0.063).DiscussionOverall, no statistical differences in sensitivity were found between STGG and enrichment broth. Nevertheless, some serotype differences were observed and STGG appeared slightly less sensitive than enrichment broth for detection of nasopharyngeal carriage of pneumococci by culturing. We recommend the continued use of STGG for transport and storage of nasopharyngeal swabs in pneumococcal carriage studies for the benefit of comparability between studies and settings, including more resource-limited settings.
- Published
- 2016
44. Effect of leaving chronic oral foci untreated on infectious complications during intensive chemotherapy
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Jennifer M. Schuurhuis, Frederik Spijkervet, A.J. van Winkelhoff, Monique A. Stokman, Lambert F.R. Span, Arjan Vissink, Microbes in Health and Disease (MHD), Personalized Healthcare Technology (PHT), Translational Immunology Groningen (TRIGR), and Guided Treatment in Optimal Selected Cancer Patients (GUTS)
- Subjects
Male ,Cancer Research ,medicine.medical_specialty ,medicine.medical_treatment ,Intensive chemotherapy ,Hematopoietic stem cell transplantation ,ACUTE MYELOID-LEUKEMIA ,CANCER-PATIENTS ,Oral cavity ,Gastroenterology ,03 medical and health sciences ,0302 clinical medicine ,haematopoietic stem-cell transplantation ,Internal medicine ,MULTIPLE-MYELOMA ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Humans ,Prospective cohort study ,Multiple myeloma ,Chemotherapy ,oral focus of infection ,business.industry ,BEAM-CONDITIONING CHEMOTHERAPY ,Hematopoietic Stem Cell Transplantation ,Mouth Mucosa ,Induction chemotherapy ,STEM-CELL TRANSPLANTATION ,Induction Chemotherapy ,dental screening ,MUCOSITIS AUDIT ,Middle Aged ,medicine.disease ,NEUTROPENIC FEVER ,Surgery ,Transplantation ,Oncology ,030220 oncology & carcinogenesis ,HIGH-DOSE MELPHALAN ,Chronic Disease ,Clinical Study ,oral health ,Female ,business ,BLOOD-STREAM INFECTIONS ,TRANSPORT MEDIA ,030215 immunology - Abstract
BACKGROUND: Leukaemic patients receiving intensive chemotherapy and patients undergoing autologous stem-cell transplantation (ASCT) are routinely screened for oral foci of infection to reduce infectious complications that could occur during therapy. In this prospective study we assessed the effect of leaving chronic oral foci of infection untreated on the development of infectious complications in intensively treated haematological patients.METHODS: We included and prospectively evaluated all intensively treated leukaemic patients and patients undergoing ASCT who were referred to our medical centre between September 2012 and May 2014, and who matched the inclusion/exclusion criteria. Acute oral foci of infection were removed before chemotherapy or ASCT, whereas chronic oral foci were left untreated.RESULTS: In total 28 leukaemic and 35 ASCT patients were included. Acute oral foci of infection were found in 2 leukaemic (7%) and 2 ASCT patients (6%), and chronic oral foci of infection in 24 leukaemic (86%) and 22 ASCT patients (63%). Positive blood cultures with microorganisms potentially originating from the oral cavity occurred in 7 patients during treatment, but were uneventful on development of infectious complications.CONCLUSIONS: Our prospective study supports the hypothesis that chronic oral foci of infection can be left untreated as this does not increase infectious complications during intensive chemotherapy.British Journal of Cancer advance online publication, 22 March 2016; doi:10.1038/bjc.2016.60 www.bjcancer.com.
- Published
- 2015
45. Evaluation of Transport Media and Specimen Transport Conditions for the Detection of SARS-CoV-2 by Use of Real-Time Reverse Transcription-PCR.
- Author
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Rogers AA, Baumann RE, Borillo GA, Kagan RM, Batterman HJ, Galdzicka MM, and Marlowe EM
- Subjects
- COVID-19, COVID-19 Testing, Humans, Pandemics, Reverse Transcriptase Polymerase Chain Reaction methods, SARS-CoV-2, Temperature, Betacoronavirus isolation & purification, Clinical Laboratory Techniques methods, Coronavirus Infections diagnosis, Laboratory Chemicals chemistry, Pneumonia, Viral diagnosis, Specimen Handling methods
- Abstract
The global coronavirus (CoV) disease 2019 (COVID-19) pandemic has resulted in a worldwide shortage of viral transport media and raised questions about specimen stability. The objective of this study was to determine the stability of severe acute respiratory syndrome CoV 2 (SARS-CoV-2) RNA in specimen transport media under various storage conditions. Transport media tested included UTM, UTM-RT, ESwab, M4, and saline (0.9% NaCl). Specimen types tested included nasopharyngeal/oropharyngeal swabs in the above-named transport media, bronchoalveolar lavage (BAL) fluid, and sputum. A high-titer SARS-CoV-2 remnant patient specimen was spiked into pooled SARS-CoV-2 RNA-negative specimen remnants for the various medium types. Aliquots of samples were stored at 18°C to 26°C, 2°C to 8°C, and -10°C to -30°C and then tested at time points up to 14 days. Specimens consistently yielded amplifiable RNA with mean cycle threshold differences of <3 over the various conditions assayed, thus supporting the use and transport of alternative collection media and specimen types under a variety of temperature storage conditions., (Copyright © 2020 Rogers et al.)
- Published
- 2020
- Full Text
- View/download PDF
46. Stability of SARS-CoV-2 in Phosphate-Buffered Saline for Molecular Detection.
- Author
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Perchetti GA, Huang ML, Peddu V, Jerome KR, and Greninger AL
- Subjects
- Buffers, COVID-19 Testing, Coronavirus Infections diagnosis, RNA, Viral genetics, SARS-CoV-2, Betacoronavirus isolation & purification, Clinical Laboratory Techniques methods, Microbial Viability drug effects, RNA, Viral isolation & purification, Saline Solution, Specimen Handling methods
- Published
- 2020
- Full Text
- View/download PDF
47. Performance of transport and selective media for swine Bordetella bronchiseptica recovery and it comparison to polymerase chain reaction detection Desempenho de meios de transporte e seletivo na recuperação de Bordetella bronchiseptica de suínos e sua comparação à detecção pela reação em cadeia pela polimerase
- Author
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Tania Alen Coutinho, Mari Lourdes Bernardi, Marisa Ribeiro de Itapema Cardoso, Sandra Maria Borowski, Andrea Micke Moreno, and David Emilio Santos Neves de Barcellos
- Subjects
suínos ,meios de transporte ,PCR ,transport media ,selective media ,lcsh:QR1-502 ,meios seletivos ,swine ,Bordetella bronchiseptica ,lcsh:Microbiology - Abstract
Three comparative assays were performed seeking to improve the sensitivity of the diagnosis of Bordetella bronchiseptica infection analyzing swine nasal swabs. An initial assay compared the recovery of B. bronchiseptica from swabs simultaneously inoculated with B. bronchiseptica and some interfering bacteria, immersed into three transport formulations (Amies with charcoal, trypticase soy broth and phosphate buffer according to Soerensen supplemented with 5% of bovine fetal serum) and submitted to different temperatures (10ºC and 27ºC) and periods of incubation (24, 72 and 120 hours). A subsequent assay compared three selective media (MacConkey agar, modified selective medium G20G and a ceftiofur medium) for their recovery capabilities from clinical specimens. One last assay compared the polymerase chain reaction to the three selective media. In the first assay, the recovery of B. bronchiseptica from transport systems was better at 27ºC and the three formulations had good performances at this temperature, but the collection of qualitative and quantitative analysis indicated the advantage of Amies medium for nasal swabs transportation. The second assay indicated that MacConkey agar and modified G20G had similar results and were superior to the ceftiofur medium. In the final assay, polymerase chain reaction presented superior capability of B. bronchiseptica detection to culture procedures.Três ensaios comparativos foram feitos com o objetivo de aperfeiçoar a sensibilidade do diagnóstico da infecção pela Bordetella bronchiseptica a partir de suabes nasais de leitões. O experimento inicial comparou a recuperação de B. bronchiseptica a partir de suabes, simultaneamente inoculados com B. bronchiseptica e algumas bactérias interferentes, imersos em três formulações para transporte (meio Amies com carvão, caldo tripticaseína de soja e tampão de fosfatos segundo Soerensen suplementado com 5% de soro fetal bovino) e submetidos a diferentes temperaturas (10ºC e 27ºC) e períodos de incubação (24, 72 e 120 horas). O experimento subseqüente comparou três meios seletivos (ágar MacConkey, meio seletivo G20G modificado e o meio de ceftiofur) em relação às suas capacidades de recuperação a partir de amostras clínicas. O último experimento comparou a reação em cadeia pela polimerase aos três meios seletivos. No primeiro experimento, a recuperação de B. bronchiseptica nos sistemas de transporte foi melhor a 27ºC e as três formulações tiveram boas performances nesta temperatura, mas o conjunto das análises qualitativa e quantitativa apontou para o uso preferencial do meio Amies para o transporte de suabes nasais. O segundo experimento indicou que o ágar MacConkey e o G20G modificado mostraram resultados similares e foram superiores ao meio de ceftiofur. No experimento final, a técnica de reação em cadeia pela polimerase apresentou uma capacidade de detecção da B. bronchiseptica superior a do cultivo.
- Published
- 2009
48. Determinación de la Viabilidad de Vibrio choleare O1 en los medios de transporte Amies y Stuar
- Author
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Cevallos M., Ana, Guillén, A., Gamarra B., Gerardo, and Roque A., Mirtha
- Subjects
medios de transporte ,viabity ,transport media ,viabilidad ,Vibrio cholerae 01 ,General Environmental Science - Abstract
It was studied the time of permanence of Vibrio cholerae 01 in the transport media Amies, Amies with charcon and Stuart. Thus, the faecal samples of thirteen cholera patients were collected and transported in those media included Cary - Blair medium. Through the fortnight cultures of each sample, V. cholerae 01 was isolated as follow: during the firsts 30 days in Stuart medium (p=l.OO). During 45 days Cary-Blair medium (p=0.095) and during 60 days in Amies wilh charcoal medium (p=Ü.199). Results indicate that V. cholerae 01 could be transported in all the media evalualed, except in Amies medium. In those media V. chalerae 01 has recovered under its culturable and viable form during the study time., Se analizó el tiempo de permanencia de Vibrio cholerae O1 en los medios de transporte Amies, Amies con carbón y Stuart. Las heces diarreicas de trece pacientes con síntomas clínicos de cólera fueron recolectadas en dichos medios incluyendo el medio Cary-Blair. Luego de realizar los coprocultivos quincenales de cada muestra, V. cholerae 01 fue aislado hasta el día 30 en el medio Stuart (p=1.00), hasta el día 45 en el medio Cary-Blair (p=0.0956) y hasta el día 60 en el medio Amies con Carbón (p.0.1992). Estos resultados indican que V. cholerae 01 puede ser transportado en los medios evaluados, excepto en el medio Amies. En los restantes medios, V. cholerae ha sido recuperado bajo su forma viable y cultivable durante el periodo de estudio.
- Published
- 2002
49. 'All in a box' a concept for optimizing microbiological diagnostic sampling in prosthetic joint infections
- Author
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Lone Heimann Larsen, Henrik Carl Schønheyder, Yijuan Xu, Trine Rolighed Thomsen, Christian Sejer Pedersen, and Ole Simonsen
- Subjects
Microbiological Techniques ,Reoperation ,medicine.medical_specialty ,Prosthesis-Related Infections ,Prosthetic joint ,Sample (material) ,medicine.medical_treatment ,Periprosthetic ,Prosthesis ,Punctures ,Infections ,General Biochemistry, Genetics and Molecular Biology ,Bone and Bones ,Specimen Handling ,Synovial Fluid ,medicine ,Technical Note ,Humans ,Sampling (medicine) ,Medical physics ,Specimen types ,Protocol (science) ,Medicine(all) ,business.industry ,Biochemistry, Genetics and Molecular Biology(all) ,Reproducibility of Results ,Effective management ,General Medicine ,Prostheses and Implants ,Surgery ,Joint Diseases ,business ,Transport media - Abstract
BACKGROUND: Accurate microbial diagnosis is crucial for effective management of prosthetic joint infections. Culturing of multiple intraoperative tissue samples has increased diagnostic accuracy, but new preparatory techniques and molecular methods hold promise of further improvement. The increased complexity of sampling is, however, a tough challenge for surgeons and assistants in the operation theatre, and therefore we devised and tested a new concept of pre-packed boxes with a complete assortment of swabs, vials and additional tools needed in the operating theatre for non-standard samples during a clinical study of prosthetic joint infections.FINDINGS: The protocol for the clinical study required triplicate samples of joint fluid, periprosthetic tissue, bone tissue, and swabs from the surface of the prosthesis. Separate boxes were prepared for percutaneous joint puncture and surgical revision; the latter included containers for prosthetic components or the entire prosthesis. During a 2-year project period 164 boxes were used by the surgeons, 98 of which contained a complete set of samples. In all, 1508 (89%) of 1685 scheduled samples were received.CONCLUSION: With this concept a high level of completeness of sample sets was achieved and thus secured a valid basis for evaluation of new diagnostics. Although enthusiasm for the project may have been a contributing factor, the extended project period suggests that the 'All in a box' concept is equally applicable in routine clinical settings with standardized but complex diagnostic sampling.
- Published
- 2014
50. Implant decontamination with 2% chlorhexidine during surgical peri-implantitis treatment: a randomized, double-blind, controlled trial
- Author
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Gerry M. Raghoebar, Henny J. A. Meijer, A. J. van Winkelhoff, Y. C. M. de Waal, Edwin Winkel, Man, Biomaterials and Microbes (MBM), Personalized Healthcare Technology (PHT), and Microbes in Health and Disease (MHD)
- Subjects
Male ,Peri-implantitis ,3RD MOLAR SURGERY ,medicine.medical_treatment ,Mouthwashes ,Dentistry ,Cetylpyridinium chloride ,THERAPY ,law.invention ,chemistry.chemical_compound ,Randomized controlled trial ,law ,OPTIMAL DOSAGE ,Chlorhexidine ,Human decontamination ,decontamination ,Middle Aged ,Treatment Outcome ,SURVIVAL ,Female ,BIOFILM ,Oral Surgery ,medicine.drug ,medicine.medical_specialty ,DENTAL PLAQUE ,Cetylpyridinium ,Dental plaque ,Double-Blind Method ,medicine ,Humans ,Aged ,Dental Implants ,Bacteria ,business.industry ,microbiology ,medicine.disease ,ALVEOLAR OSTEITIS ,DIGLUCONATE ,Peri-Implantitis ,Bacterial Load ,Surgery ,chemistry ,Debridement (dental) ,Anti-Infective Agents, Local ,Implant ,business ,resective surgery ,TRANSPORT MEDIA ,ACTINOBACILLUS-ACTINOMYCETEMCOMITANS - Abstract
ObjectiveThe objective of this randomized, double-blind, controlled trial was to evaluate the clinical, radiographic, and microbiological effects of implant surface decontamination with a 2% chlorhexidine (CHX) solution in comparison with a 0.12% chlorhexidine+0.05% cetylpyridinium chloride (CPC) solution during resective surgical peri-implantitis treatment.Material and methodsForty-four patients (108 implants) with peri-implantitis were treated with resective surgical treatment consisting of bone re-contouring, surface debridement and chemical decontamination, and apically repositioned flap. Patients were randomly allocated to decontamination with a 2% CHX solution (test group) or 0.12% CHX+0.05% CPC (control group). Clinical and radiographic parameters were recorded before treatment (baseline), and at 3, 6, and 12months after treatment. Microbiological parameters were recorded during surgery.ResultsMultilevel analysis showed no significant differences in bleeding, suppuration, probing pocket depth, and radiographic bone loss between control and test group over three follow-up measurements (3, 6, and 12months) from baseline. Both decontamination procedures resulted in significant reductions in anaerobic bacterial counts on the implant surface, but no significant difference was noted between control and test group (mean log 3.372.34 vs. 3.65 +/- 2.87, P=0.99).ConclusionsThe use of a 2% CHX solution for implant surface decontamination during resective peri-implantitis therapy does not lead to improved clinical, radiographic, or microbiological results compared with a 0.12% CHX+0.05% CPC solution. Overall, the additional use of CHX reduces anaerobic bacterial load on the implant surface better than mechanical debridement alone, but does not seem to enhance clinical treatment outcomes (ClinicalTrials.gov number NCT01852253).
- Published
- 2014
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