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Chlamydomonas reinhardtii , a unicellular green alga, is a prominent model for green biotechnology and for studying organelles' function and biogenesis, such as chloroplasts and cilia. However, the stable expression of foreign genes from the nuclear genome in C. reinhardtii faces several limitations, including low expression levels and significant differences between clones due to genome position effects, epigenetic silencing, and time-consuming procedures. We developed a robust transient expression system in C. reinhardtii to overcome these limitations. We demonstrated efficient entry of in vitro-transcribed mRNA into wall-less cells and enzymatically dewalled wild-type cells via electroporation. The endogenous or exogenous elements can facilitate efficient transient expression of mRNA in C. reinhardtii , including the 5' UTR of PsaD and the well-characterized Kozak sequence derived from the Chromochloris zofingiensis. In the optimized system, mRNA expression was detectable in 120 h with a peak around 4 h after transformation. Fluorescently tagged proteins were successfully transiently expressed, enabling organelle labeling and real-time determination of protein sub-cellular localization. Remarkably, transiently expressed IFT46 compensated for the ift46–1 mutant phenotype, indicating the correct protein folding and function of IFT46 within the cells. Additionally, we demonstrated the feasibility of our system for studying protein-protein interactions in living cells using bimolecular fluorescence complementation. In summary, the established transient expression system provides a powerful tool for investigating protein localization, function, and interactions in C. reinhardtii within a relatively short timeframe, which will significantly facilitate the study of gene function, genome structure, and green biomanufacturing in C. reinhardtii and potentially in other algae. • Successful establishment of an RNA-based transient expression system in Chlamydomonas. • Function of 5' UTR on gene expression occurs at the post-transcriptional level in Chlamydomonas. • Analysis of the localization, function, and interactions of proteins can be completed within one week. [ABSTRACT FROM AUTHOR]

New data (onshore, offshore) on the Upper Cretaceous Ilam Formation of southwestern Iran are provided concerning the common presence of dasycladalean green algae (families Triploporellaceae, Polyphysaceae) that have so far been treated mostly in open nomenclature. The assemblage consists of the five taxa Salpingoporella ubaiydhi Radoičić, 1979, Dissocladella ondulata (Raineri, 1922), Trinocladus tripolitanus Raineri, 1922, Clypeina cf. dusanbrstinai Radoičić, 1997, and gen. et sp. indet. The taxa typically prevail in wackestones-packstones but exhibit different distributional patterns. While S. ubaiydhi and T. tripolitanus, rarely associated with D. ondulata, form a characteristic assemblage in a distal infralittoral facies (more diverse assemblage; zone no. 31 of Wynd, 1965), C. cf. dusanbrstinai occurs in a proximal infralittoral facies associated with miliolids among also complex forms (rhapydioninids) (assemblage zone no. 30 of Wynd, 1965). It is concluded that the two assemblage zones refer to different palaeoenvironments, instead of different ages ('lower' and 'upper'). Based on benthic foraminifera, the main part of the Ilam Formation can be ascribed to the Santonian. For the lower part, a late Coniacian age is suggested implied indirectly by the comparably long vertical range of the rotaliid Orbitokathina vonderschmitti Hottinger, 1966 of the studied core. This would be in conformity with the K 150 Arabian Plate K 150 sequence boundary referring to a late Turonian?-early Coniacian hiatus. From a palaeobiogeographic perspective, T. tripolitanus is a cosmopolitan species, S. ubaiydhi is restricted to the area of the former Arabian Plate (subsurface Iraq, Saudi Arabia and Egypt), while C. dusanbrstinai has been recorded only from Serbia (type-locality). In addition to the algae, the stratigraphic discussion includes the occurrence of the benthic foraminifera Reticulinella? kaeveri Cherchi, Radoičić & Schroeder, 1989 and Orbitoides mid-orientalis (Eames & Smout, 1956) in the Ilam Formation. [ABSTRACT FROM AUTHOR]

The cell wall is a crucial feature that allows ancestral streptophyte green algae to colonize land. Expansin, an extracellular protein that mediates cell wall loosening in a pH-dependent manner, could be a powerful tool for studying cell wall evolution. However, the evolutionary trajectory of the expansin family remains largely unknown. Here, we conducted a comprehensive identification of 2461 expansins across 64 sequenced species, ranging from aquatic algae to terrestrial plants. Expansins originated in chlorophyte algae and may have conferred the ability to loosen cell walls. The four expansin subfamilies originated independently: α-expansin appeared first, followed by β-expansin, and then expansin-like A and expansin-like B, reflecting the evolutionary complexity of plant expansins. Whole genome duplication/segmental duplication and tandem duplication events greatly contributed to expanding the expansin family. Despite notable changes in sequence characteristics, the intron distribution pattern remained relatively conserved among different subfamilies. Phylogenetic analysis divided all the expansins into five clades, with genes from the same subfamily tending to cluster together. Transcriptome data from 16 species across ten lineages and qRT-PCR analysis revealed varying expression patterns of expansin genes, suggesting functional conservation and diversification during evolution. This study enhances our understanding of the evolutionary conservation and dynamics of the expansin family in plants, providing insight into their roles as cell wall-loosening factors. [ABSTRACT FROM AUTHOR]

This study investigated the fatty acid (FA) compositions and proteins' molecular weight profiles (MWP) of eight macroalgae species collected from the Antalya and Çanakkale in Turkiye: three red (Liagora viscida, Laurencia obtusa, Palisada perforata), three brown (Stypopodium schimperi, Cladostephus spongiosus, Halopteris scoparia), and two green (Caulerpa scalpelliformis, Penicillus capitatus). The potential bioactivities of the FAs were evaluated by in silico studies, focusing on anti‐cholinesterase, antioxidant, and cardioprotective effects. The predominant FA across all species was palmitic acid comprising over 50% of total FAs in most species. Docosahexaenoic acid (DHA) was abundant in seven of the eight species. Significant variations in MWPs were observed among species, with values ranging from <2532 to >67 000 Da. Brown algae generally exhibited higher MWP levels compared to red and green algae which showed distinctive profiles. In silico studies revealed that DHA exhibited the strongest binding affinity toward lipoxygenase acetylcholinesterase and butyrylcholinesterase enzymes with −8.829, −10.636, and −7.984 kcal mol−1 docking scores, respectively. DHA demonstrated significant interactions with key residues, forming hydrogen bonds critical for enzymatic inhibition and potential therapeutic effects. Molecular dynamics simulations confirmed the stability of DHA–protein complexes with low root mean square deviation and root mean square fluctuation values. This comprehensive analysis underscores the nutritional richness and potential bioactivity of macroalgae, particularly in terms of FA composition and protein profiles. The findings suggest that macroalgae, rich in DHA and other beneficial FAs, hold promise for pharmaceutical and nutraceutical applications, warranting further exploration into their therapeutic potential. Practical Applications: This study explores the fatty acid compositions and protein MWPs of eight macroalgae from Turkey's coasts. The findings suggest potential applications in aquaculture feeds and functional foods. Notably, DHA stands out for its antioxidant, cardioprotective, and cholinesterase inhibitor properties, making these macroalgae promising sources for obtaining DHA. The research supports practical applications in developing nutritional supplements, pharmaceuticals, and aquaculture practices, harnessing the bioactive potential of these marine resources for human health and industry. [ABSTRACT FROM AUTHOR]

The green alga Pediastrum duplex forms colonies through asexual reproduction and has a unique life cycle. To elucidate the mechanisms that regulate the asexual reproductive cycle in P. duplex, we analyzed the effects of light on the processes and gene expression involved in each step of the asexual reproductive cycle, revealing light irradiation to be essential for increasing the number of colonies. Among the processes in the asexual reproductive cycle, the transition from cell hypertrophy to zoospore formation could proceed even in the dark if glucose was added to the medium. Transcriptome analysis revealed that the expression of different groups of genes was significantly promoted or suppressed before and after the number of colonies increased. Our findings indicate that the asexual reproductive cycle of P. duplex includes a process promoted by photosynthesis. This study enhances our understanding of the growth characteristics of P. duplex and other microalgae. [ABSTRACT FROM AUTHOR]

Stuccoes are very delicate decorative elements of Roman age. Very few of them survived almost intact to present days and, for this reason, they are of great interest to restorers and conservators. In this study, we combined metabarcoding and untargeted metabolomics to characterise the taxonomic and metabolic profiles of the microorganisms forming biofilms on the stuccoes located on the ceiling of the laconicum, a small thermal environment in the archaeological park of Baia (southern Italy). We found that some samples were dominated by bacteria while others by eukaryotes. Additionally, we observed high heterogeneity in the type and abundance of bacterial taxa, while the eukaryotic communities, except in one sample (at prevalence of fungi), were dominated by green algae. The metabolic profiles were comparable across samples, with lipids, lipid-like molecules and carbohydrates accounting for roughly the 50% of metabolites. In vitro and in vivo tests to remove biofilms on stuccoes using essential oils blends were successful at a 50% dilution for one hour and half. This integrative study advanced our knowledge on taxonomic and metabolic profiles of biofilms on ancient stuccoes and highlighted the potential impacts of these techniques in the field of cultural heritage conservation. [ABSTRACT FROM AUTHOR]

Eutrophication reduces the variability of the community composition of plankton. However, the mechanisms underlying the diversity and restructuring of eukaryotic algal communities remain unknown. This study analysed the diversity and compositional patterns of algal communities in shallow eutrophic lakes. It investigated how these communities were modified by key genera through mediating inter‐algal associations under the influence of abiotic factors. Inter‐algal associations explained more variance in algal communities than environmental variables, and variation in composition and diversity was primarily derived from Scenedesmus, Desmodesmus and Cryptomonas, rather than nutrients. Scenedesmus and Desmodesmus were positively correlated with the genera of Chlorophyta and formed the hub of the algal association network. When the relative abundance of Scenedesmus and Desmodesmus increased from 0.41% to 13.74%, communities enriched in biomarkers of Bacillariophyta, Chrysophyceae and Cryptophyta transitioned to communities enriched in biomarkers of Chlorophyta. Moreover, negative associations between the Chlorophyta hub genera and other non‐Chlorophyta genera increased. High concentrations of total phosphorus altered the composition of algal communities by increasing the abundance of Scenedesmus and Desmodesmus, which in turn had cascading effects through inter‐algal associations. Additionally, algal communities with higher abundances of Scenedesmus and Desmodesmus were more susceptible to the effects of total phosphorus. Our study suggested that inter‐algal associations, centred on Scenedesmus and Desmodesmus, had a greater influence on algal diversity and community structure than other factors. Nutrient levels were not a direct driver of algal diversity and community structure adjustments, but acted indirectly by enhancing the influence of Scenedesmus and Desmodesmus. [ABSTRACT FROM AUTHOR]

The Trebouxiophyceae is a widespread and species-rich green algal class encompassing mostly coccoid algae with a simple spherical, ovoid or ellipsoidal outline. However, some poorly sampled lineages have evolved more elaborate shapes or even complex thalli, adding to the morphological diversity of the class. By investigating new and previously established strains, this study expands the range of morphologies exhibited by the class members by uncovering a clade of croissant-like trebouxiophytes. Phylogenetic analyses inferred from nuclear 18S rDNA and chloroplast rbcL sequences confirmed the monophyly of the 'microcroissant' clade, which we propose to be classified as a new family, Ragelichloridaceae. This family includes two novel genera, Ragelichloris and Navichloris, and the previously described Thorsmoerkia. The position of Ragelichloridaceae within Trebouxiophyceae stayed unresolved but chloroplast phylogenomics showed that the family belongs to the broader incertae sedis group that also includes Xylochloris and Leptosira. In addition, our study showed that the similar morphotype-bearing genus Chlorolobion, previously classified within Chlorophyceae, is a genuine trebouxiophyte, potentially related to Ragelichloridaceae. Highlights: A new family-level clade uncovered within the Trebouxiophyceae. Two new genera, Ragelichloris and Navichloris, are described. The genus Chlorolobion is shown to be a trebouxiophyte. [ABSTRACT FROM AUTHOR]

Societal Impact Statement: New sources of essential and other nutritionally and/or pharmacologically important fatty acids for human use can be discovered through bioprospecting. Demonstrating how fatty acids in plants and algae are distributed across a phylogeny is a critical first step in this process. Here, new sources of essential omega‐3 fatty acids that are critically important to human health were identified, such as green and Chromista algae, bryophytes and some angiosperm families. The identification of certain taxa that are high in critical fatty acids is important for developing new sources of these healthful compounds. Summary: Essential fatty acids (EFA) including long‐chain omega‐3 and omega‐6 EFA are key nutrients that broadly support the health of individuals and the ecosystems they inhabit. Production of these EFA is critical to global nutritional security, and therefore, it is imperative to assess the distribution patterns of FA in plants to bioprospect new resources that do not threaten biodiversity.We used a meta‐analytic approach (phylogenetic signal analysis), which incorporated a wide variety of taxa to map FA profiles including both presence and abundance of specific FA and EFA onto a plant phylogeny including algae, bryophytes, pteridophytes, gymnosperms and angiosperms.Our phylogenetic signal analysis revealed that presence/absence of most FA of interest were randomly or ubiquitously distributed, while FA content was significantly clustered in specific clades for most key FA (including eicosapentaenoic acid (EPA), docosahexaenoic acid (DHA) and nervonic acid). Both green and Chromista algae displayed relatively high proportions of EPA and DHA, while green algae contained higher proportional amounts of stearidonic acid (SDA). Further, signal analysis revealed high proportional content of gamma‐linoleic acid (GLA) in bryophytes and some angiosperm families, suggesting potential sources for bioprospecting GLA.This analysis provides a crucial foundation for understanding the influence of phylogenetic relationships in the relative proportions of key FA in plants and algae across a diverse phylogeny. Furthermore, in demonstrating how fatty acids in plants and algae are distributed across a phylogeny, we provide a critical first step in bioprospecting for new sources of essential and other nutritionally‐ and/or pharmacologically important fatty acids for human use. [ABSTRACT FROM AUTHOR]

One of the major threats to biodiversity is changing fire regimes, particularly increasingly frequent fires, especially during the dry season. However, studies on the direct and indirect effects of fire on biotic responses in aquatic ecosystems are still scarce. In this study, we investigated how water quality and phytoplankton community structure were affected by different ash concentrations from burning vegetation of a tropical savanna.We used a microcosm experiment to simulate the aquatic ecosystem with different ash concentration scenarios and evaluated the water quality and the composition, richness and density of phytoplankton over time.We found increased total phosphorus and ammoniacal nitrogen concentrations after ash addition, in addition to changes in electrical conductivity. We identified 242 phytoplankton taxa throughout the experiment and identified changes in species composition among treatments. We identified changes in the taxonomic richness of total phytoplankton, green algae and desmids over time. The density of total phytoplankton, diatoms, green algae, desmids and cyanobacteria also changed over time.Our results suggest that ash from terrestrial fires affects water quality and phytoplankton communities depending on the proportion of ash input. Our results serve as a basis for further investigations of the effects of fire on abiotic conditions in aquatic ecosystems and their communities over long periods of time. Finally, longer‐term experiments are needed to evaluate delayed responses by the phytoplankton community. [ABSTRACT FROM AUTHOR]

The acclimation of the green algae Chlamydomoas reinhardtii to high light (HL) has been studied predominantly under continuous illumination of the cells. Here, we investigated the impact of fluctuating HL in alternation with either low light (LL) or darkness on photosynthetic performance and on photoprotective responses. Compared to intervening LL phases, dark phases led to (1) more pronounced reduction of the photosystem II quantum efficiency, (2) reduced degradation of the PsbS protein, (3) lower energy dissipation capacity and (4) an increased pool size of the xanthophyll cycle pigments. These characteristics indicate increased photo‐oxidative stress when HL periods are interrupted by dark phases instead of LL phases. This overall trend was similar when comparing long (8 h) and short (30 min) HL phases being interrupted by long (16 h) and short (60 min) phases of dark or low light, respectively. Only the degradation of PsbS was clearly more efficient during long (16 h) LL phases when compared to short (60 min) LL phases. Summary Statement: The performance of the unicellular green alga Chlamydomonas reinhardtii has been studied so far, mostly under continuous illumination conditions. We investigated the impact of fluctuating high light (HL) on the photosynthetic performance and the photoprotective response in C. reinhardtii. Our data indicate that intervening dark phases negatively affect cell growth and lead to a delay of HL acclimation processes, including the activation of energy dissipation. [ABSTRACT FROM AUTHOR]

Helicosporidium is a genus of nonphotosynthetic, green algae in the family Chlorellaceae, closely related to Prototheca. It is a known pathogen of invertebrates, and its occurrence in vertebrates has not been documented. A captive, 10-month-old, male, albino California kingsnake (Lampropeltis californiae) was submitted for necropsy. Gross examination revealed hemorrhagic laryngitis and a red mottled liver. Histologically, intravascular, intramonocytic/macrophagic and extracellular, eukaryotic organisms were observed in all tissues. These organisms stained positive with Grocott-Gomori methenamine silver and periodic acid-Schiff and were variably acid-fast and gram-positive. Ultrastructural analysis revealed approximately 4 µm vegetative multiplication forms and cysts with 3 parallel ovoid cells and a helically coiled filamentous cell. A polymerase chain reaction with primers targeting Prototheca, amplicon sequencing, and Bayesian phylogenetic analysis confirmed it clustered within Helicosporidium sp. with 100% posterior probability. The genus Helicosporidium was found to nest within the genus Prototheca, forming a clade with Prototheca wickerhamii with 80% posterior probability. [ABSTRACT FROM AUTHOR]

Recent years have seen the Ulva green tide and Sargassum golden tide become commonplace in the coastal waters of China. However, little is known on how the combination of ocean warming and eutrophication would affect the interaction of green and golden tides. In this study, we cultured the green tide alga Ulva prolifera and the golden tide alga Sargassumhorneri under different temperatures (5, 10, 15, 20, 25, and 30°C) and two nutrient concentrations (Low nutrient, LN: 5 mM-nitrate and 0.5 mM-phosphate; High nutrient, HN: 500 mM-N and 50 mM-P) in both monoculture and coculture systems to investigate the physiological responses and their competitive relationships. In monocultures, the growth of U. prolifera and S. horneri, along with pigment concentrations and photosynthesis, increased with rising temperature, reaching a plateau at 15 - 25°C. However, when the temperature increased to 30°C, the growth of U. prolifera and S. horneri decreased abruptly, with S. horneri even suffering death. In coculture, the growth of both U. prolifera and S. horneri was inhibited compared to the monoculture, with the greatest decline observed in S. horneri at 25°C under two nutrient conditions. Our results show that U. prolifera would outcompete S. horneri under high temperature in coculture, suggesting that ocean warming would enhance the competitive advantage of green tide over golden tide under eutrophication in the future. [ABSTRACT FROM AUTHOR]

Dynamic changes in intracellular ultrastructure can be critical for the ability of organisms to acclimate to environmental conditions. Microalgae, which are responsible for ~50% of global photosynthesis, compartmentalize their Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase (Rubisco) into a specialized structure known as the pyrenoid when the cells experience limiting CO2 conditions; this compartmentalization is a component of the CO2 Concentrating Mechanism (CCM), which facilitates photosynthetic CO2 fixation as environmental levels of inorganic carbon (Ci) decline. Changes in the spatial distribution of mitochondria in green algae have also been observed under CO2 limitation, although a role for this reorganization in CCM function remains unclear. We used the green microalga Chlamydomonas reinhardtii to monitor changes in mitochondrial position and ultrastructure as cells transition between high CO2 and Low/Very Low CO2 (LC/VLC). Upon transferring cells to VLC, the mitochondria move from a central to a peripheral cell location and orient in parallel tubular arrays that extend along the cell’s apico-basal axis. We show that these ultrastructural changes correlate with CCM induction and are regulated by the CCM master regulator CIA5. The apico-basal orientation of the mitochondrial membranes, but not the movement of the mitochondrion to the cell periphery, is dependent on microtubules and the MIRO1 protein, with the latter involved in membrane–microtubule interactions. Furthermore, blocking mitochondrial respiration in VLC-acclimated cells reduces the affinity of the cells for Ci. Overall, our results suggest that mitochondrial repositioning functions in integrating cellular architecture and energetics with CCM activities and invite further exploration of how intracellular architecture can impact fitness under dynamic environmental conditions. [ABSTRACT FROM AUTHOR]

Chlorella, a single‐celled green algae rich in proteins, holds promise as a source of bioactive peptides. This research aimed to isolate an antioxidant peptide from Chlorella, examining its stability through digestion. Using Response Surface Methodology (RSM), we identified optimal hydrolysis conditions for Chlorella Protein Hydrolysate (CPH): 55°C, pH 8.75, and an enzyme‐to‐substrate ratio of 2.15%. These conditions led to CPH with notable radical scavenging activity against 1,1‐diphenyl‐2‐picrylhydrazyl (DPPH) (53.19 ± 0.99%), 2,2′‐azino‐bis (3‐ethylbenzothiazoline‐6‐sulfonic acid) (ABTS) (76.86 ± 0.28%), hydroxyl radical (53.39 ± 1.74%), and Fe2+ chelating rates of 22.56 ± 2.97%. Subsequently, peptides under 3 kDa isolated by ultrafication proved particularly stable and antioxidative after in vitro digestion. In addition, further purify to obtain component C1 with DPPH radical scavenging ability of 59.62 ± 1.29% and an Fe2+ chelating ability of 49.78 ± 1.55%. Subsequent LC‐MS/MS identification and virtual screening led to the discovery of a stable and antioxidative peptide, Ser‐Gly‐His‐His‐Lys‐Pro‐Leu (SGHHKPL). The study provides the theoretical basis for the development and utilization of chlorella. [ABSTRACT FROM AUTHOR]

Freshwater salinization is an increasing threat to lakes worldwide, but despite being a widespread issue, little is known about its impact on biological communities at the base of the food chain. Here we used a mesocosm set‐up coupled with modern high‐frequency sensor technology to identify short‐ and longer‐term responses of phytoplankton to salinization in an oligotrophic lake. We tested the effects of salinization over a gradient of increasing salt concentrations that can be found in natural lakes exposed to road salt contamination (added salt range: from 0 to 1500 mg Cl− L−1). The high‐frequency chlorophyll‐a (chl‐a) fluorescence measurements showed an increasing divergence of chl‐a concentrations along the salinization gradient over time, with substantially lower concentrations at higher salt levels. At the sub‐daily scale, we found a profound suppression of day–night signal cycles with increasing salinity, which could be related to physiological stress due to the impairment of photosynthesis via effects on the photosystem II or potential changes in the active migration of phytoplankton. Community analyses revealed a similar decline pattern for the total phytoplankton biomass and a collapse of the total zooplankton biomass. Interestingly, we found a loss of phytoplankton diversity coupled with a compositional re‐organization involving the loss of dominant green algae but increased biomass of salt‐tolerant cyanobacteria. Altogether, these results suggest that specific cyanobacterial taxa can benefit from freshwater salinization following the collapse of dominant phytoplankton competitors and zooplankton herbivores. The results also highlight the value of autonomous sensor technology to capture novel, small‐scale ecological responses to freshwater salinization, and thereby to track fast changes in primary producer communities. [ABSTRACT FROM AUTHOR]

The colonization of land by plants approximately 450–500 million years ago (Mya) is one of the most important events in the history of life on Earth. Land plants, hereafter referred to as “embryophytes,” comprise the foundation of every terrestrial biome, making them an essential lineage for the origin and maintenance of biodiversity. The embryophytes form a monophyletic clade within one of the two major phyla of the green algae (Viridiplantae), the Streptophyta. Estimates from fossil data and molecular clock analyses suggest the Streptophyte algae (Charophytes) diverged from the other main phylum of green algae, the Chlorophyta, as much as 1500 Mya. Here we present a phylogenetic analysis using transcriptomic and genomic data of 62 green algae and embryophyte operational taxonomic units, 31 of which were assembled de novo for this project. We have focused on identifying the charophyte lineage that is sister to embryophytes, and show that the Zygnematophyceae have the strongest support, followed by the Charophyceae. Furthermore, we have examined amino acid and codon usage across the tree and determined these data broadly follow the phylogenetic tree. We concluded by searching the data set for protein domains and gene families known to be important in embryophytes. Many of these domains and genes have homologous sequences in the charophyte lineages, giving insight into the processes that underlay the colonization of the land by plants. This provides new insights into green algal diversification, identifies previously unknown attributes of genome evolution within the group, and shows how functional mechanisms have evolved over time. [ABSTRACT FROM AUTHOR]

Metal silicates (Zn, Mn, Ni and Co) were synthesized from natural green algae (GAs) as supercapacitor electrodes. In this study, a multi-step treatment with two kinds of porogens was used to produce a larger specific surface area and more abundant hierarchical pores. Firstly, GAs were treated with 1.0 M NaCl solution to prepare large pores. Secondly, metal silicates were synthesized from GAs using a hydrothermal reaction. Lastly, the as-synthesized samples were soaked in 3.0 M NaOH solution to obtain the products (m-C-MSi, M = Zn, Mn, Ni and Co). Compared with the composites without multi-step treatment, the synthetic materials in this research possess excellent electrochemical properties both as electrodes and as HSCs. This work proved that the multi-step treatment with porogens is an effective method to enhance the electrochemical performance of metal-silicate supercapacitors. [ABSTRACT FROM AUTHOR]

State transitions are an acclimatory response by which plants, algae, and cyanobacteria counteract photosynthetic inefficiency caused by changes in incident light quality. In plants and green algae, state transition 7 (STN7/STT7) kinase promotes state 2 transition. Conserved cysteine residues are implicated in STN7/STT7 regulation, but the precise nature of their involvement remains unclear. Here, an analysis of the STN7 thiols in vitro and a determination of their midpoint redox potential indicate that the lumenal disulfide linkage is unlikely to be redox regulated while the stromal cysteines form a regulatory intramolecular disulfide. We further show that thioredoxin f1 (Trx‐f1) reduces the STN7 stromal disulfide linkage as consistent with a Trx‐f1‐mediated inhibition of the kinase under high light. [ABSTRACT FROM AUTHOR]

To better identify the responses of phytoplankton blooms to warming conditions as expected in a climate change context, an in situ mesocosm experiment was carried out in a coastal Mediterranean lagoon (Thau Lagoon, South of France) in April 2018. Our objective was to assess both the direct and indirect effects of warming on phytoplankton, particularly those mediated by top-down control. Four treatments were applied: 1) natural planktonic community with ambient water temperature (C); 2) natural planktonic community at +3°C elevated temperature (T); 3) exclusion of larger zooplankton (> 200 μm; mesozooplankton) leaving microzooplankton predominant with ambient water temperature (MicroZ); and 4) exclusion of larger zooplankton (> 200 μm; mesozooplankton) at +3°C elevated temperature (TMicroZ). Warming strongly depressed the amplitude of the phytoplankton bloom as the chlorophyll a concentration was twice lower in the T treatment. This decline under warmer conditions was most likely imputed to increase top-down control by zooplankton. However, removal of mesozooplankton resulted in an opposite trend, with a higher bloom amplitude observed under warmer conditions (MicroZ vs. TMicroZ) pointing at a strong interplay between micro- and mesozooplankton and the effect of warming for the spring phytoplankton blooms. Furthermore, both warming and mesozooplankton exclusion induced shifts in phytoplankton community composition during bloom and post-bloom periods, favoring dinoflagellates and small green algae at the expense of diatoms and prymnesiophytes. Moreover, warming altered phytoplankton succession by promoting an early bloom of small green flagellates, and a late bloom of diatoms. Our findings clearly highlighted the sensitivity of phytoplankton blooms amplitudes, community composition and succession patterns to temperature increases, as well as the key role of initial zooplankton community composition to elicit opposite response in bloom dynamics. It also points out that warmer conditions might favor dinoflagellates and small green algae, irrespective of zooplankton community composition, with potential implications for food web dynamics and energy transfer efficiency under future ocean condition. [ABSTRACT FROM AUTHOR]

Long time series of spatiotemporally continuous phytoplankton functional type (PFT) data are essential for understanding marine ecosystems and global biogeochemical cycles as well as for effective marine management. In this study, we integrated artificial intelligence (AI) technology with multisource marine big data to develop a spatial–temporal–ecological ensemble model based on deep learning (STEE-DL). This model generated the first AI-driven global daily gap-free 4 km PFT chlorophyll a concentration product from 1998 to 2023 (AIGD-PFT). The AIGD-PFT significantly enhances the accuracy and spatiotemporal coverage of quantifying eight major PFTs: diatoms, dinoflagellates, haptophytes, pelagophytes, cryptophytes, green algae, prokaryotes, and Prochlorococcus. The model input encompasses (1) physical oceanographic, biogeochemical, and spatiotemporal information and (2) ocean colour data (OC-CCI v6.0) that have been gap-filled using a discrete cosine transform–penalized least squares (DCT-PLS) approach. The STEE-DL model utilizes an ensemble strategy with 100 residual neural network (ResNet) models, applying Monte Carlo and bootstrapping methods to estimate the optimal PFT chlorophyll a concentration and assess the model uncertainty through ensemble means and standard deviations. The model's performance was validated using multiple cross-validation strategies – random, spatial-block, and temporal-block methods – combined with in situ data, demonstrating STEE-DL's robustness and generalization capability. The daily updates and seamless nature of the AIGD-PFT data product capture the complex dynamics of coastal regions effectively. Finally, through a comparative analysis using a triple-collocation analysis (TCA) approach, the competitive advantages of the AIGD-PFT data product over existing products were validated. The complete product dataset (1998–2023) can be freely downloaded from 10.11888/RemoteSen.tpdc.301164 (Zhang and Shen, 2024a). [ABSTRACT FROM AUTHOR]

Mamiellophyceae are a ubiquitous class of unicellular green algae in the global ocean. Their ecological importance is highlighted in studies focused on the prominent genera Micromonas, Ostreococcus, and Bathycoccus. Mamiellophyceae are susceptible to prasinoviruses, double‐stranded DNA viruses belonging to the nucleocytoplasmic large DNA virus group. Our study represents the first isolation of a prasinovirus in the South China Sea and the only one to infect the globally distributed genus Mantoniella. We conducted a comparative analysis with previously identified viral relatives, encompassing morphological characteristics, host specificity, marker‐based phylogenetic placement, and whole‐genome sequence comparisons. Although it shares morphological and genetic similarities with established prasinoviruses, this novel virus showed distinct genetic traits, confining its infection to the species Mantoniella tinhauana. We also explored the global biogeography of this prasinovirus and its host by mapping metagenomic data and analysing their relationship with various environmental parameters. Our results demonstrate a pronounced link between the virus and its host, both found predominantly in higher latitudes in the surface ocean. By gaining an increased understanding of the relationships between viruses, hosts, and environments, researchers can better make predictions and potentially implement measures to mitigate the consequences of climate change on oceanic processes. [ABSTRACT FROM AUTHOR]

As an essential intrinsic component of photosystem II (PSII) in all oxygenic photosynthetic organisms, heme-bridged heterodimer cytochrome b559 (Cyt b559) plays critical roles in the protection and assembly of PSII. However, the underlying mechanisms of Cyt b559 assembly are largely unclear. Here, we characterized the Arabidopsis (Arabidopsis thaliana) rph1 (resistance to Phytophthora1) mutant, which was previously shown to be susceptible to the oomycete pathogen Phytophthora brassicae. Loss of RPH1 leads to a drastic reduction in PSII accumulation, which can be primarily attributed to the defective formation of Cyt b559. Spectroscopic analyses showed that the heme level in PSII supercomplexes isolated from rph1 is significantly reduced, suggesting that RPH1 facilitates proper heme assembly in Cyt b559. Due to the loss of RPH1-mediated processes, a covalently bound PsbE–PsbF heterodimer is formed during the biogenesis of PSII. In addition, rph1 is highly photosensitive and accumulates elevated levels of reactive oxygen species under photoinhibitory-light conditions. RPH1 is a conserved intrinsic thylakoid protein present in green algae and terrestrial plants, but absent in Synechocystis, and it directly interacts with the subunits of Cyt b559. Thus, our data demonstrate that RPH1 represents a chloroplast acquisition specifically promoting the efficient assembly of Cyt b559, probably by mediating proper heme insertion into the apo-Cyt b559 during the initial phase of PSII biogenesis. A chloroplast thylakoid protein is involved in the formation of an essential multisubunit protein complex during the initial steps of photosystem II assembly. [ABSTRACT FROM AUTHOR]

To thrive on melting alpine and polar snow, some Chlorophytes produce an abundance of astaxanthin, causing red blooms, often dominated by genus Sanguina. The red cells have not been cultured, but we recently grew a green biciliate conspecific with Sanguina aurantia from a sample of watermelon snow. This culture provided source material for Oxford Nanopore Technology and Illumina sequencing. Our assembly pipeline exemplifies the value of a hybrid long- and short-read approach for the complexities of working with a culture grown from a field sample. Using bioinformatic tools, we separated assembled contigs into 2 genomic pools based on a difference in GC content (57.5 and 55.1%). We present the data as 2 assemblies of S. aurantia variants but explore other possibilities. High-throughput chromatin conformation capture analysis (Hi-C sequencing) was used to scaffold the assemblies into a 96-Mb genome designated as "A" and a 102-Mb genome designated as "B." Both assemblies are highly contiguous: genome A consists of 38 scaffolds with an N50 of 5.4 Mb, while genome B has 50 scaffolds with an N50 of 6.4 Mb. RNA sequencing was used to improve gene annotation. [ABSTRACT FROM AUTHOR]

This study aimed to investigate the effects of copper (CuSO4) and zinc (ZnSO4) overload on male reproductive toxicity and the potential of a polysaccharide extracted from green alga Chaetomorpha linum (PS) in mitigating their toxicities. Adult male mice strain of 25 ± 2 g of weight was subdivided into eight groups. Group 1 served as control; group 2 received PS (200 mg/kg), and groups 3 and 4 received intraperitoneally zinc (60 mg/kg b.w) and copper (33 mg/kg b.w), respectively. Group 5 received both zinc (60 mg/kg b.w) and copper (33 mg/kg b.w), group 6 received zinc (60 mg/kg b.w) associated with PS (200 mg/kg), group 7 received copper (33 mg/kg b.w) associated with PS (200 mg/kg), and group 8 received zinc (60 mg/kg b.w) and copper (33 mg/kg b.w) associated with PS (200 mg/kg). Results suggested that ZnSO4 and CuSO4 significantly decreased the functional sperm parameters. Furthermore, extended exposure to these elements increased oxidative stress biomarkers, including malondialdehyde (MDA) as a measure of lipid peroxidation and advanced oxidation protein products (AOPP) indicating protein oxidative damage. This process also reduces the activity of antioxidant enzymes such as glutathione (GSH) and glutathione peroxidase (GPx), which neutralize and catalyze free radicals. Histopathological changes in mice testis were also studied. However, the co-treatments with PS significantly reduced these effects and promoted the reproductive parameters in male mice. In conclusion, PS exhibited protective effects against zinc and copper-induced reproductive toxicity, making it a potential adjuvant treatment for testicular toxicity. [ABSTRACT FROM AUTHOR]

Chlorophyceae is a class of plankton commonly discovered in aquaculture ponds in tropical aquatic regions. Therefore, this study aimed to analyze the abundance levels of Chlorophyceae in pen-culture ponds during the dry season using a dynamic modeling system. The method adopted was a causal ex-post facto design, and the observed parameters were water quality and plankton abundance. The results showed the presence of various plankton classes such as Chrysophyceae, Chyanophyceae, Chlorophyceae, Dynophyceae, and Oligotrichea, as well as the discovery of 17 plankton genera. Water quality parameters identified Total Dissolved Solids (TDS) concentrations, dissolved oxygen levels, temperature, pH levels, and salinity ranging from 3.06–7.37 mg·L-1, 4.39–6.30 mg·L-1, 26.21–31.17 °C, 7.7–8.1, and 10–25 ppt, respectively. The average plankton dominance index (D’) showed Chlorophyceae dominance at 4.55, followed by Chyanophyceae, Chrysophyceae, Dynophyceae, and Oligotrichea at 1.78, 0.08, 0.07, and 0.01, respectively, falling in the index category of 0.5 < D < 1. Furthermore, the average plankton abundance dominance level (pi) signified Chlorophyceae dominance at 7.11E-01, followed by Chyanophyceae, Chrysophyceae, Dynophyceae, and Oligotrichea at 4.68E-01, 1.30E-01, 8.05E-02, and 3.96–02, respectively. This implied that in pen-culture water, Chlorophyceae significantly dominated over other classes. Dynamic modeling results showed the abundance of Chlorophyceae in ponds A, C, and D to be relatively uniform (± 5.00E-02 cell/ ml) compared to pond B (± 0.10E-00 cell/ml). It was important to acknowledge that as Chlorophyceae dominance increased (0.10E-00–5.0E-02 cell/ml), the total plankton abundance in the water decreased contradictorily (0.01E00–100E-04 cell/ml) due to over-dominance. On the basis of the modeling description, Chlorophyceae sustained for 20 weeks during the culture period, with optimal growth observed from the 1st to the 5th week. In conclusion, this plankton class experienced dynamic fluctuations during the pen-culture cultivation period, and the life cycle stability was dependent on water quality and temperature. [ABSTRACT FROM AUTHOR]

Ecosystems of the fjell fields in the Khibiny Mountains (Kola Peninsula) are investigated, including vegetation, soils, soil algae, and invertebrate fauna. We use EUNIS habitat typification (2013) to differentiate habitats. The most common habitat types include (1) crustose–lichen (Rhizocarpon geographicum) rock on eluvium of base-rich, alkaline, and siliceous rocks (U5111); (2) lichen-, sedge-, and dwarf- and shrub–dominated turfs and cushions on gravelly and rocky slopes (U5112); (3) sedge-, moss-, and lichen–dominated on rubble and stony mountain plateaus and peaks (U5113); (4) biological soil crust on fine-earth and gravelly polygon edges (U5114); and (5) late snow bed moss vegetation (U5115). Soils of the fjell fields are represented by Leptosols. The content of soil organic C is very high (26–32%), despite the thin soil profile, which has no illuvial–eluvial differentiation by the content of SiO2 and R2O3. The total flora includes 176 species of plants and lichens. Soil alga flora is composed of 43 species, where green algae of Chlorophyceae prevails. Soil microarthropods are dominated by Collembola, Oribatida, and Mesostigmata, which are also typical for mountain tundra. The soil microbial activity and the diversity and abundance of soil algae and invertebrates depends on the habitat type and soil moisture, as well as on soil organic matter content and increases on wet substrates or under more complex vegetation. [ABSTRACT FROM AUTHOR]

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The influence of microalgae on the formation of associated prokaryotic assemblages in halophilic microbial communities is currently underestimated. The aim of this study was to characterize shifts in prokaryotic assemblages of halophilic microalgae upon their transition to laboratory cultivation. Monoalgal cultures belonging to the classes Chlorodendrophyceae, Bacillariophyceae, Trebouxiophyceae, and Chlorophyceae were isolated from habitats with intermediate salinity, about 100 g/L, nearby Elton Lake (Russia). Significant changes were revealed in the structure of algae-associated prokaryotic assemblages, indicating that microalgae supported sufficiently diverse and even communities of prokaryotes. Despite some similarities in their prokaryotic assemblages, taxon-specific complexes of dominant genera were identified for each microalga species. These complexes were most different among Alphaproteobacteria, likely due to their close association with microalgae. Other taxon-specific bacteria included members of phylum Verrucomicrobiota (Coraliomargarita in assemblages of Navicula sp.) and class Gammaproteobacteria (Salinispirillum in microbiomes of A. gracilis). After numerous washings of algal cells, only alphaproteobacteria Marivibrio remained in all assemblages of T. indica, likely due to a firm attachment to the microalgae cells. Our results may be useful for further efforts to develop technologies applied for industrial cultivation of halophilic microalgae and for developing approaches to obtain new prokaryotes with a microalgae-associated lifestyle. [ABSTRACT FROM AUTHOR]

Phototropin (Phot), a blue light‐sensing LOV domain protein, mediates blue light responses and is evolutionarily conserved across the green lineage. Klebsormidium nitens, a green terrestrial alga, presents a valuable opportunity to study adaptive responses from aquatic to land habitat transitions. We determined the crystal structure of Klebsormidium nitens Phot LOV1 domain (KnLOV1) in the dark and engineered different mutations (R60K, Q122N, and D33N) to modulate the lifetime of the photorecovery cycle. We observed unusual, slow recovery kinetics in the wild‐type KnLOV1 domain (τ = 41 ± 3 min) compared to different mutants (R60K: τ = 2.0 ± 0.1 min, Q122N: τ = 1.7 ± 0.1 min, D33N: τ = 9.6 ± 0.1 min). Crystal structures of wild‐type KnLOV1 and mutants revealed subtle but critical changes near the protein chromophore that is responsible for modulating protein dark recovery time. Our findings shed light on the unique structural and biochemical characteristics of the newly studied KnLOV1 and its evolutionary importance for phototropin‐mediated physiology. [ABSTRACT FROM AUTHOR]

Volvox sect. Volvox is a group of green algae with unique morphological features (thick cytoplasmic bridges between somatic cells and spiny zygote walls) and a worldwide distribution. Despite research interest in the diversity of organisms in ancient lakes, Volvox sect. Volvox from ancient lakes worldwide has not been identified to the species level. Here, we established clonal cultures of two species of this group originating from Lake Biwa, an ancient lake in Japan, and performed identification based on morphological and molecular data. One was identified as Volvox kirkiorum based on the nuclear ribosomal DNA internal spacer region (ITS) sequence, bisexual (monoicous or monoecious) spheroids, and zygote morphology. The other showed genetic separation from related species based on the secondary structure of the ITS and results of phylogenetic analysis of a combined data set from the nuclear actin gene, ITS, and two plastid genes (large subunit of RuBisCO and photosystem II CP43 apoprotein gene); it represented a new phylogenetic lineage within Volvox sect. Volvox, suggesting possible endemism in Lake Biwa. This species produced bisexual spheroids with different zygote morphology and zygote number from other species with bisexual spheroids in Volvox sect. Volvox. Therefore, Volvox biwakoensis Nozaki et H. Yamaguchi sp. nov. is described herein. This is the first endemic species of the genus Volvox described from an ancient lake. [ABSTRACT FROM AUTHOR]

Wastewater treatment using the activated sludge method requires a large amount of electricity for aeration. Therefore, wastewater treatment using co-culture systems of microalgae and heterotrophic microorganisms, which do not require aeration, has attracted attention as an energy-saving alternative to the method. In this study, we investigated different combinations of microalgae and heterotrophic microorganisms to improve the efficiency of wastewater treatment. Three types of microalgae and five heterotrophic microorganisms were used in combination for wastewater treatment. The combination of Chlamydomonas reinhardtii NIES-2238 and Saccharomyces cerevisiae SH-4 showed the highest wastewater treatment efficiency. Using this combination for artificial wastewater treatment, the removal rates of total organic carbon, PO43−, and NH4+ reached 80%, 93%, and 63%, respectively, after 18 h of treatment. To the best of our knowledge, this is the first study to show that a combination of green algae and yeast improves the efficiency of wastewater treatment. Transcriptome analysis revealed that the combined wastewater treatment altered the expression of 1371 and 692 genes in C. reinhardtii and S. cerevisiae, respectively. One of the main reasons for the improved wastewater treatment performance of the combination of green algae and yeast was the increased expression of genes related to the uptake of phosphate and ammonium ions in the green algae. As both the green algae C. reinhardtii and the yeast S. cerevisiae are highly safe microorganisms, the establishment of their effective combination for wastewater treatment is highly significant. Key points: • Combination of various microalgae and heterotrophic microorganisms was tested • Combination of green algae and yeast showed the highest efficiency • This is the first report that this combination is effective for wastewater treatment [ABSTRACT FROM AUTHOR]

The cheese industry produces substantial amounts of raw cheese whey wastewater (RW), which requires effective treatment prior to environmental disposal. This study presents an innovative sequential batch system that combines macrophyte and microalgal cultivation for RW remediation. The efficacy of Lemna minor MO23 in first-line photobioreactors (PBR-1) and Chlorella sp. MC18 (CH) or Scenedesmus sp. MJ23-R (SC) in second-line photobioreactors (PBR-2) for pollutant removal was evaluated. The nutrient removal capacity of L. minor, CH, and SC was assessed at optimal tolerance concentrations, alongside nutrient recovery from treated RW (TRW) by PBR-1 for microalgae biomass production. The results demonstrate that all three species effectively purified the cheese whey wastewater. L. minor efficiently removed COD, nitrate, phosphate, and sulfate from RW, producing TRW effluent suitable for microalgal growth. CH and SC further purified TRW, enhancing biomass production. CH outperformed SC with a 4.79% higher maximum specific growth rate and 20.95% higher biomass yield. Biochemical analyses revealed the potential of CH and SC biomass for applications such as biofuels and aquaculture. After treatment, the physicochemical parameters of the effluent were within the regulatory limits. This demonstrates that the PBR-1 and PBR-2 series-coupled system effectively purifies and recovers dairy effluents while complying with discharge standards. [ABSTRACT FROM AUTHOR]

Caulerpa lentillifera is a green alga that contains essential nutrients. This study investigated the effects of autoclave- and microwave-assisted C. lentillifera extracts (A-CLE and M-CLE) on the growth, reproduction, immunity, and oxidative stress in Daphnia magna. Both extracts were supplemented to D. magna at 1 to 5 g/L. The results showed that D. magna treated with 2 to 5 g/L of A-CLE produced juveniles faster than the control. Juveniles at 1 to 4 g/L A-CLE treatments increased. Moreover, juveniles in 1 g/L M-CLE treatment significantly increased, but the hatching time was not affected. A-CLE also stimulated the immunity of D. magna by increasing hemocytes in the 3 g/L treatment. Furthermore, both extracts did not affect the growth rate, phenoloxidase activity, malondialdehyde level, and catalase activity in D. magna. Therefore, our results indicated that both extracts could enhance the reproduction and immunity of D. magna. Our study is useful for the health improvement of D. magna. [ABSTRACT FROM AUTHOR]

We examined the ecological and toxicological implications of the microplastic, Cyanox®53, found in sediments and varnish clams across seven beaches in Burrard Inlet, British Columbia (BC). Using the simulation models embedded within Estimation Programs Interface (EPI) Suite™, the potential persistence, bioaccumulation, and toxicity of Cyanox®53 was assessed to evaluate the risk to varnish clams foraging on sediment containing this contaminant. Moreover, we used a bioenergetic model, based on the blue-listed surf scoter species, to estimate the risk of daily ingestion of Cyanox®53 per body weight in overwintering seabirds. Our findings indicate that varnish clams collected from Burrard Inlet accumulate on average 0.46 particles of Cyanox®53/clam, and based on bioenergetic modeling, results in surf scoters potentially consuming 78 (for males) to 83 (for females) pieces of Cyanox®53 daily from foraged varnish clams. EPI Suite™ predicted Cyanox®53 to be persistent, however, unlikely to bioaccumulate as a "traditional" chemical. Furthermore, the estimation of potential acute and chronic toxicity of Cyanox®53 to aquatic organism surrogates, such as fish, Daphnia magna, and green algae, was inconclusive due to model variability and limitations within EPI Suite™. To fully understand the potential risks of Cyanox®53 further investigation is warranted. [ABSTRACT FROM AUTHOR]

The ROCO family is a family of GTPases characterized by a central ROC-COR tandem domain. Interest in the structure and function of ROCO proteins has increased with the identification of their important roles in human disease. Nevertheless, the functions of most ROCO proteins are still unknown. In the present study, we characterized the structure, evolution, and expression of ROCOs in four species of brown algae. Brown algae have a larger number of ROCO proteins than other organisms reported to date. Phylogenetic analyses showed that ROCOs have an ancient origin, likely originated in prokaryotes. ROCOs in brown algae clustered into four groups and showed no strong relationship with red algae or green algae. Brown algal ROCOs retain the ancestral LRR-ROC-COR domain arrangement, which is found in prokaryotes, plants and some basal metazoans. Remarkably, individual LRR motifs in ROCO genes are each encoded by separate exons and exhibit intense exon shuffling and diversifying selection. Furthermore, the tandem LRR exons exhibit alternative splicing to generate multiple transcripts. Both exon shuffling and alternative splicing of LRR repeats may be important mechanisms for generating diverse ligand-binding specificities as immune receptors. Besides their potential immune role, expression analysis shows that many ROCO genes are responsive to other stress conditions, suggesting they could participate in multiple signal pathways, not limited to the immune response. Our results substantially enhance our understanding of the structure and function of this mysterious gene family. [ABSTRACT FROM AUTHOR]

With the proceeding of global warming and water eutrophication, the phenomenon of green tide has garnered significant societal interest. Consequently, researchers had increasingly focused on the potential applications of green algae biomass, particularly its polysaccharides. The polysaccharide serves as the primary active constituent of green algae and has demonstrated numerous advantageous biological activities, including antioxidant, antiviral, anticoagulant, hypolipidemic and immuno-modulatory activities. The favorable bioavailability and solubility of green algae oligosaccharides are attributed to their low molecular weight. So there has been a growing interest in researching green algae polysaccharides and oligosaccharides for the utilization of marine biological resources. This review summarized the extraction, purification, chemical structure, composition, biological activity, and potential applications prospect of polysaccharides and oligosaccharides derived from green algae. The review could be helpful for expanding the applications of polysaccharides and oligosaccharides of green algae. [ABSTRACT FROM AUTHOR]

Endophytic fungi from marine seaweed have been known to be the source of new secondary biological metabolites. The ample coast in Malaysia in particular the Johor Coast has diverse marine seaweed, home to potential marine endophytic fungi. In this light, this study aims to characterise endophytic fungi in selected seaweeds from the Johor Coast and determine the antibacterial potential. Fungal endophytes were aseptically isolated from brown seaweed, Sargassum sp. and green algae, Ulva lactuca. Macroscopic and microscopic observations were performed for characterisation as fungal genera. Sequence analysis of Internal Transcribed Spacer (ITS) suggested the Ave fungal isolates as Trichoderma asperellum, Aspergillus aculeatus, Aspergillus fumigatus, Penicillium sp. FKI-3389 and Hypoxylon monticulosum. Antibacterial activity was determined by minimum inhibition concentration assay against Ave human pathogenic bacteria. Only T. asperellum, A. fumigatus and H. monticulosum showed antibacterial potential with the latter indicating broad-spectrum antibacterial activity. As a conclusion, Ave endophytic fungal species were successfully determined from the brown and green seaweeds. Three of the fungal endophytes showed potential in antibacterial activity with H. monticulosum displayed broad spectrum activity. [ABSTRACT FROM AUTHOR]

Flavodiiron proteins (FLVs) catalyze the reduction of oxygen to water by using electrons from Photosystem I (PSI). In several photosynthetic organisms such as cyanobacteria, green algae, mosses and gymnosperms, FLV-dependent electron flow protects PSI from over-reduction and consequent damage especially under fluctuating light conditions. In this work we investigated biochemical and structural properties of FLVA and FLVB from the model moss Physcomitrium patens. The two proteins, expressed and purified from Escherichia coli, bind both iron and flavin cofactors and show NAD(P)H oxidase activity as well as oxygen reductase capacities. Moreover, the co-expression of both FLVA and FLVB, coupled to a tandem affinity purification procedure with two different affinity tags, enabled the isolation of the stable and catalytically active FLVA/B hetero tetrameric protein complex with cooperative nature. The multimeric organization was shown to be stabilized by inter-subunit disulfide bonds. This investigation provides valuable new information on the biochemical properties of FLVs, with new insights into their in vivo activity. [ABSTRACT FROM AUTHOR]

Members of the domain of unknown function 231/trichome birefringence–like (TBL) family have been shown to be O -acetyltransferases catalyzing the acetylation of plant cell wall polysaccharides, including pectins, mannan, xyloglucan and xylan. However, little is known about the origin and evolution of plant cell wall polysaccharide acetyltransferases. Here, we investigated the biochemical functions of TBL homologs from Klebsormidium nitens , a representative of an early divergent class of charophyte green algae that are considered to be the closest living relatives of land plants, and Marchantia polymorpha , a liverwort that is an extant representative of an ancient lineage of land plants. The genomes of K. nitens and Marchantia polymorpha harbor two and six TBL homologs, respectively. Biochemical characterization of their recombinant proteins expressed in human embryonic kidney 293 cells demonstrated that the two K. nitens TBLs exhibited acetyltransferase activities acetylating the pectin homogalacturonan (HG) and hence were named KnPOAT1 and KnPOAT2. Among the six M. polymorpha TBLs, five (MpPOAT1 to 5) possessed acetyltransferase activities toward pectins and the remaining one (MpMOAT1) catalyzed 2- O - and 3- O -acetylation of mannan. While MpPOAT1,2 specifically acetylated HG, MpPOAT3,4,5 could acetylate both HG and rhamnogalacturonan-I. Consistent with the acetyltransferase activities of these TBLs, pectins isolated from K. nitens and both pectins and mannan from M. polymorpha were shown to be acetylated. These findings indicate that the TBL genes were recruited as cell wall polysaccharide O -acetyltransferases as early as in charophyte green algae with activities toward pectins and they underwent expansion and functional diversification to acetylate various cell wall polysaccharides during evolution of land plants. [ABSTRACT FROM AUTHOR]

Herein, we report the synthesis of activated biochar from green algae and the effect of its doping on the structural, photocatalytic, and energy storage properties of PEDOT-PSS. The morphology of pure and doped samples was investigated with Fourier Transform Infrared Spectroscopy (FTIR), Atomic Force Microscopy (AFM), Brunauer–Emmett–Teller (BET) analysis, and thermogravimetric analysis (TGA). AFM results for PEDOT-PSS@6wt.% of BC indicate that the calculated average peak height, particle size, and roughness were 283 nm, 136 nm, and 71 nm, respectively. Adding biochar to PEDOT-PSS significantly improved the thermal stability of PEDOT-PSS up to 550 °C. The novel photocatalyst PEDOT-PSS@6wt.% BC improved photocatalytic performance by approximately 17% in Methylene Blue (MB) dye removal. The electrochemical performance in terms of supercapacitors for the synthesized samples was investigated using cyclic voltammetry (CV), galvanostatic charge–discharge (GCD), specific capacitance, stability, and electrochemical impedance spectra (EIS). PEDOT-PSS@6wt.% of BC as a novel electrode material in supercapacitors exhibits an initial specific capacitance of 1300 Fg−1. Moreover, the PEDOT-PSS@6wt.% of BC electrode shows excellent stability up to 1000 cycles of operation. The EIS studies suggest the presence of charge transfer resistance. Considering the economical biosynthesis and multifunctional features, the PEDOT-PSS@6wt.% of BC could potentially be used as a photocatalyst to remove organic dyes and supercapacitors in energy storage applications. [ABSTRACT FROM AUTHOR]

Simple Summary: Ulva prolifera is an important species with a large market value. This species thrives at 10–20 °C but struggles at lower temperatures. Research has demonstrated that environmental stresses, such as temperature and light intensity, have a substantial impact on its growth through changing pathways and gene expression. Our present study examines the processes by which U. prolifera responds to combined high light intensity/temperature challenges, and the results point to the involvement of several genes and pathways in these intricate adaptive mechanisms. Gaining an understanding of these systems is essential to enhancing the efficiency and sustainability of macroalgae farming, particularly in light of climate change. Our research focused on understanding the genetic mechanisms that contribute to the tolerance of Ulva prolifera (Chlorophyta), a marine macroalgae, to the combined stress of high temperature and high light intensity. At the mRNA level, the up-regulated DEGs showed enrichment in pathways related to ribosomes, proteasomes, and peroxisomes. The spliceosome pathway genes were found to be vital for U. prolifera's ability to adapt to various challenging situations in all the comparison groups. In response to elevated temperature and light intensity stress, there was a significant increase in genes and pathways related to ribosomes, proteasomes, and peroxisomes, whereas autophagy showed an increase in response to stress after 24 h, but not after 48 h. These findings provide novel insights into how U. prolifera adapts to elevated temperature and light stress. [ABSTRACT FROM AUTHOR]

Complex plastids, characterized by more than two bounding membranes, still present an evolutionary puzzle for the traditional endosymbiotic theory. Unlike primary plastids that directly evolved from cyanobacteria, complex plastids originated from green or red algae. The Chromalveolata hypothesis proposes a single red alga endosymbiosis that involved the ancestor of all the Chromalveolata lineages: cryptophytes, haptophytes, stramenopiles, and alveolates. As extensive phylogenetic analyses contradict the monophyly of Chromalveolata, serial plastid endosymbiosis models were proposed, suggesting a single secondary red alga endosymbiosis within Cryptophyta, followed by subsequent plastid transfers to other chromalveolates. Our findings based on 97 plastid-encoded markers, 112 species, and robust phylogenetic methods challenge all the existing models. They reveal two independent secondary endosymbioses, one within Cryptophyta and one within stramenopiles, precisely the phylum Ochrophyta, with two different groups of red algae. Consequently, we propose a new model for the emergence of red alga plastid–containing lineages and, through molecular clock analyses, estimate their ages. [ABSTRACT FROM AUTHOR]

The objective of this study was to analyze the fatty acid composition of five strains from the genera Chlorella, Micractinium, and Meyerella and conduct an initial assessment of their biotechnological potential. It was found that the strain C. vulgaris VKM Al-335 is a good producer of palmitic acid, the Micractinium strains VKM Al-332 and VKM Al-343 are rich in ω-3 fatty acids, whereas the Meyerella strains VKM Al-346 and VKM Al-428 are producers of ω-6 fatty acids. A comparison of the biotechnological potential of algae with that of higher plant leaves (wheat) demonstrates that algal fatty acids exhibit greater diversity, although it is inferior to wheat leaves in terms of polyunsaturated and ω-3 fatty acids. Correlation analysis showed that when only straight-chain fatty acids were considered, the strains were distributed on the principal component analysis plot in accordance with their genetic relationships. However, when the entire fatty acid profile, inclusive of minor branched-chain and cyclic fatty acids, was analyzed, the algae distribution was in accordance with the environmental conditions in the original habitat, suggesting a possible connection between branched-chain and cyclic fatty acids and microalgae adaptability to environmental temperature conditions. [ABSTRACT FROM AUTHOR]

Reactive oxygen species (ROS) play a crucial role as signaling molecules in both plant and animal cells, enabling rapid responses to various stimuli. Among the many cellular mechanisms used to generate and transduce ROS signals, ROS-induced-ROS release (RIRR) is emerging as an important pathway involved in the responses of various multicellular and unicellular organisms to environmental stresses. In RIRR, one cellular compartment, organelle, or cell generates or releases ROS, triggering an increased ROS production and release by another compartment, organelle, or cell, thereby giving rise to a fast propagating ROS wave. This RIRR-based signal relay has been demonstrated to facilitate mitochondria-to-mitochondria communication in animal cells and long-distance systemic signaling in plants in response to biotic and abiotic stresses. More recently, it has been discovered that different unicellular microorganism communities also exhibit a RIRR cell-to-cell signaling process triggered by a localized stress treatment. However, the precise mechanism underlying the propagation of the ROS signal among cells within these unicellular communities remained elusive. In this study, we employed a reaction-diffusion model incorporating the RIRR mechanism to analyze the propagation of ROS-mediated signals. By effectively balancing production and scavenging processes, our model successfully reproduces the experimental ROS signal velocities observed in unicellular green algae (Chlamydomonas reinhardtii) colonies grown on agar plates, furthering our understanding of intercellular ROS communication. [Display omitted] [ABSTRACT FROM AUTHOR]

The current study examines the phycoremediation potential cum biomass productivity and biomass quality of hitherto uninvestigated five algae in Bold's Basal Medium (BBM) of varying nitrogen (½ to 4 × N), phosphorus (½ to 4 × P), and both together (½ to 2 × NP) with varying N:P. All five algae displayed unique responses in biomass productivity, lipid yield and productivity, and nitrogen (N) and phosphorous (P) removal efficiency. Chlorolobion braunii exhibited the highest biomass productivity (107 to 109.23 mg/L/ day) in N-rich media (3 to 4 × N in BBM), and Monoraphidium contortum exhibited the highest biomass productivity (103.66 mg/L/day) in P-rich media (2 to 4 × P in BBM). All the algae exhibited a higher lipid yield and productivity in BBM with a reduced ratio of N:P (0.85 to 1.47) from a lesser addition of N (½ × N or NP in BBM). Monoraphidium contortum exhibited significantly higher lipid yield (44.38%) and productivity (35.94 mg/L/day) than other species. The lipid content of four species demonstrated high-quality biofuel properties. Halochlorella rubescens exhibited the maximum nitrogen removal efficiency of 96% (in BBM), and Monoraphidium contortum exhibited the maximum phosphorus removal efficiency of 94.4% (2 × NP in BBM). Overall, the experiments stand as a model for understanding the influence of variations in N and P concerning N:P on biomass productivity, lipid content, lipid productivity, and N and P removal rate and efficiency of algae for initial standardization of the culture protocols for further industrial trials. [ABSTRACT FROM AUTHOR]

Abstract: The functional state of enrichment cultures of the Chlorophycean strain Chlorococcum oleofaciens CAMU MZ–Ch4 under various cultivation conditions was studied. Experiments with different aeration conditions, cultivation durations, and nitrogen and phosphorus concentrations in the medium were carried out to evaluate the growth dynamics of the strain and its biochemical characteristics. The contents of chlorophylls, carotenoids, proteins, lipids, retinol, α-tocopherol, ascorbic acid, phenolic compounds, lipid peroxidation products, antioxidant enzymes (glutathione peroxidase, catalase, superoxide dismutase), and succinate dehydrogenase activity were measured. The lipid content on the fully supplemented Bold's basal medium increased to 381.03 mg g−1 dry weight at the late stationary growth phase. This value is 1.3–2.8 times higher than in other experiments. The use of aeration was associated with an increased content of proteins at 283.56 mg g−1 and of carotenoids at 2.12 mg g−1. Also, cultures at the early stationary growth phase with aeration showed the ability to accumulate phenolic compounds and ascorbic acid in amounts up to 0.32 mg g−1 and 0.19 mg g−1. The 74-day-old cultures had the highest contents of retinol (0.16 mg g−1) and α-tocopherol (0.68 mg g−1). Growth in nitrogen- and phosphorus-depleted media increased catalase and superoxide dismutase activity. A comprehensive analysis of all data showed that the antioxidant defence system is stress-resistant and flexible under varying aeration conditions and nitrogen and phosphorus availabilities. Thus, the strain CAMU MZ–Ch4 can be considered a potential producer of lipids, pigments, proteins, and vitamins under various culturing conditions. [ABSTRACT FROM AUTHOR]

Antibiotic contamination from hospitals, animal husbandry, and municipal wastewater is graver than imagined, and it possess serious risks to the health of humans and animals, with the emergence of multidrug resistant bacteria; those affect the growth of higher plants too. Conventional wastewater treatment methods adopted today are inadequate for removing antibiotics from wastewater. Intuitively, the remediation process using mixed algae should be effective enough, for which algae-based remediation technologies have emerged as sustainable remedial methods. This review summarized the detection of antibiotics in field water in most countries; a comprehensive overview of algae-based technologies, algal adsorption, accumulation, biodegradation, photodegradation, hydrolysis, and the use of algae-bacteria consortia for the remediation of antibiotics in wastewaters in done. Green algae namely, Chlamydomonas sp., Chlorella sp., C. vulgaris, Spyrogira sp. Scenedesmus quadricauda, S. obliquus, S. dimorphus, Haematoccus pluvialis, and Nannochlopsis sp., had been reporting have 90–100% antibiotic removal efficiency. The integration of bioelectrochemical systems and genetically engineered prokaryotic algal species offer promising avenues for improving antibiotic removal in the future. Overall, this review highlights the need for tenacious research and development of algae-based technologies to reduce antibiotic contamination in aquatic environments, for holistic good. [ABSTRACT FROM AUTHOR]

Understanding the spatial distribution (SD) of unicellular organisms is crucial for comprehending population dynamics and adaptive strategies at the microbial scale. These behaviors include the formation of ordered structures through intercellular interactions and the broader implications for ecosystem interactions. In this study, the spatial distribution of the motile unicellular alga Chlamydomonas reinhardtii was investigated, with a focus on high-density conditions approximated by an area fraction of φ = 10%. Cell counting was carried out by image analysis, which applies the quasi-two-dimensional observation technique developed in our previous studies to analyze cell interactions in microspaces with thicknesses of 80 µm and 200 µm using both variance-to-mean ratio (VMR) and Eberhardt statistics (ES). The study reveals that experimental results, when evaluated using both VMR and ES, confirmed a similar trend and a density-dependent transition in cellular interaction. This transition ranges from swarming at lower densities to dispersal at higher densities, with a critical boundary observed at approximately φ = 8%. The findings suggest that cell behavior in dense populations shifts due to limited space and resources, offering a new perspective on the adaptive strategies of cells. These insights could enhance understanding of the mechanisms governing cell behavior in crowded environments. [ABSTRACT FROM AUTHOR]

In coastal environments, eutrophication and ocean acidification both decrease pH, impacting the abiotic conditions experienced by marine life. Infaunal invertebrates are exposed to lower pH conditions than epifauna, as porewater pH is typically lower than the overlying water. We investigated the effects of altering sediment carbonate chemistry, through the addition of transplanted green algae and/or crushed shell hash, on an infaunal community. This factorial field experiment was conducted on an intertidal mudflat in the Bay of Fundy, New Brunswick, from July to September of 2020. After 1 month, sediment pH was increased across all depths (0.09 ± 0.03 pH units, or 0.84–2.5%) by the shell hash, but was not affected by the algae, while the multivariate community composition was impacted by an interaction between algae and experimental block (6.9% of variation) as well as shell hash treatment (2.7% of variation). After month 2, all responses to the treatments disappeared, likely due to tidal currents washing away some of the shell hash and algae, suggesting reapplication of the treatments is needed. Most of the variation in the community composition was explained by spatial variation in the treatment replicates among the treatment blocks (33.5% of variation). Despite the small effects of the experimental treatments on sediment carbonate chemistry, distance-based linear modeling indicated that sediment pH may be an important driver of variation in the infaunal community. Given the complexity of the processes driving sediment chemistry in coastal environments, further experiments exploring changing environmental conditions that drive infaunal marine community structure are required. [ABSTRACT FROM AUTHOR]