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Background. Plant chloroplast genome have conservative structure, but its nucleotide sequence is polymorphous due to which cpDNA fragments are often used in taxonomic and phylogenetic studies. Despite the widespread distribution and use of Fabeae species, mainly peas ( Pisum ), data on the intraspecific diversity of cpDNA fragments are almost absent. The aim of the work was to analyze the intraspecific variability of three cpDNA spacers in Pisum. Materials and methods. As a result of the work, intergenic spacers trnY – trnT , trnH – psbA and rpoB – trnC in 38 accessions of the Pisum and related Fabeae species were sequenced. Despite the fact that the selected chloroplast fragments are generally considered to be sufficiently variable in plants and are often used for phylogenetic studies, Pisum accessions have been found to have no intraspecific differences in two of the three spacers sequences analyzed. Results and conclusion. A total 97 SNPs were detected in Pisum accessions, seven of them distinguished P. sativum from P. fulvum . The most variable of the analyzed fragments was the intergenic spacer rpoB–trnC . Based on rpoB–trnC sequence 17 haplotypes in P. sativum and four haplotypes in P. fulvum were revealed. The cpDNA sequencing data were used for a phylogenetic analysis. On the obtained tree Vavilovia formosa accession formed a separate branch from pea accessions. All Pisum accessions fall in one cluster, split into distinct P. sativum and P. fulvum subclusters (BI = 99%).

Satellite DNA (satDNA) belongs to the highly repetitive fraction of eukaryotic genomes. It is best characterized by the formation of long arrays of almost identical sequences that are tandemly repeated. These repeats are widely distributed in plant species where they can make up a substantial proportion of their genomes. Despite the long history of satDNA research, the classic methodology did not allow for its comprehensive characterization. Consequently, the fragmentary information gathered during the last 60 years does not answer the many questions surrounding the evolution of these elements. The development of new techniques in sequencing, together with the availability of new bioinformatics tools for analyzing different genome fractions, has presented an opportunity to advance studies of tandem repeats. This thesis describes the landscape characterization of satDNA in the genome of Fabeae species by exploring the diversity of satDNA within a genome, the association of these elements with functional centromeres, as well as their genome-wide organization. We employed new computational pipelines specifically designed for the analysis of tandem repeats from next generation sequencing data, and combined their results with molecular and cytogenetic methods to achieve comprehensive characterization of the satellite repeats.

The amount of DNA per nucleus, usually expressed in terms of the amount within a haploid chromosome set (C-value), is known to have significant impacts on morphological and physiological features in plants. Among these features, C-value influences replication time and hence duration of the whole cell cycle, as well as sizes of cells. The Fabeae tribe of the family Leguminosae (Fabaceae) is remarkable in having both annual and perennial species and the largest C-values in the family. Polyploidy is rare in this tribe. This work aims to study the correlation between annuality/perenniality, C-value and some morphological characteristics of reproductive organs, such as the number of pollen grains, ovules, flowers per inflorescence as well as pollen and flower size, in annual and perennial species within the tribe Fabeae (Vicieae). The average C-value of perennials is statistically significantly higher than of annuals. Compared with perennials, annuals are mostly characterized by single- or few-flowered inflorescences and fewer ovules per carpel independently of flower size. All floral characteristics exhibit a range of intraspecific variation thus complicating the estimation of precise impact of C-value on phenotype. Features of the reproductive system in the Fabeae are therefore partly correlated with C-value, most probably mediated through the interaction between ecological adaptation of species with their life cycle duration.

Satellite repeats are major sequence constituents of centromeres in many plant and animal species. Within a species, a single family of satellite sequences typically occupies centromeres of all chromosomes and is absent from other parts of the genome. Due to their common origin, sequence similarities exist among the centromere-specific satellites in related species. Here, we report a remarkably different pattern of centromere evolution in the plant tribe Fabeae, which includes genera Pisum, Lathyrus, Vicia, and Lens. By immunoprecipitation of centromeric chromatin with CENH3 antibodies, we identified and characterized a large and diverse set of 64 families of centromeric satellites in 14 species. These families differed in their nucleotide sequence, monomer length (33–2,979 bp), and abundance in individual species. Most families were species-specific, and most species possessed multiple (2–12) satellites in their centromeres. Some of the repeats that were shared by several species exhibited promiscuous patterns of centromere association, being located within CENH3 chromatin in some species, but apart from the centromeres in others. Moreover, FISH experiments revealed that the same family could assume centromeric and noncentromeric positions even within a single species. Taken together, these findings suggest that Fabeae centromeres are not shaped by the coevolution of a single centromeric satellite with its interacting CENH3 proteins, as proposed by the centromere drive model. This conclusion is also supported by the absence of pervasive adaptive evolution of CENH3 sequences retrieved from Fabeae species.

In the 1960s–1980s, the Vavilov Institute of Plant Industry, known worldwide as VIR, organized a substantial series of studies dedicated to a Caucasian endemic, the Pliocene relic Vavilovia formosa (Fabeae: Fabaceae). Those investigations are little known to the scientific community, although, in fact, the priority right for integrated research into this plant belongs to VIR. As a result of the cycle of studies, the first ideas about the biology and ecology of the species, the manner of its reproduction, its intraspecific diversity, the degree of crossability with other members of the tribe, its karyotype and anatomy were developed. The plants of V. formosa are not reproduced ex situ and their germplasm is absent in the world’s gene banks. Therefore, collecting V. formosa plants in their hard-to-reach habitats in the mountains is always crucial for research purposes, so a number of collecting expeditions were launched to the Greater Caucasus. The data thus obtained are discussed in the context of modern achievements in world science regarding this species.

The genome organization and gene content of plastome (plastid genome) are highly conserved among most flowering plant species. Plastome variation (in size and gene order) is rare in photosynthetic species but size variation, rearrangements and gene/intron losses is attributed to groups of seed plants. Fabaceae (legume family), in particular the subfamily Papilionoideae and the inverted repeat lacking clade (IRLC), a largest legume lineage, display the most dramatic and structural change which providing an excellent model for understanding of mechanisms of genomic evolution. The IRLC comprises 52 genera and ca 4000 species divided into seven tribes. In present study, we have sampled several representatives from each tribe across the IRLC from various herbaria and field. The ycf4 gene, which plays a role in regulating and assembly of photosystem I, is more variable in the tribe Fabeae than in other tribes. In certain species of Lathyrus, Pisum and Vavilovia, all belonging to Fabeae, the gene is either absent or a pseudogene. Our study suggests that ycf4 gene has undergone positive selection. Furthermore, the rapid evolution of the gene is locus and lineage specific and is not a shared character of the IRLC in legumes.

Comparative sequence analysis of symbiotic genes (nodA, nodC, nodD, nifH), which are elements of accessory component of the rhizobial genome, demonstrated that the strains of Rhizobium leguminosarum bv. viciae, isolated from the nodules of a relic legume, Vavilovia formosa, the closest relative of hypothetical common ancestor of the tribe Fabeae, represented a group separated from the strains of R. leguminosarum bv. viciae, isolated from other representatives of this tribe (Vicia, Lathyrus, Pisum, Lens). No isolation was observed relative to the genes representing the core component of the rhizobial genome (16S rDNA, ITS, glnII) or relative to host specificity of the rhizobia. The data obtained suggest that sequence divergence of symbiotic genes marks the initial stage of sympatric speciation, which can be classified as the isolation of the relic “vaviloviae” symbiotype, a possible evolutionary precursor of the “viciae” biotype.

Rhizobia are α- and s-proteobacteria that associate with legumes in symbiosis to fix atmospheric nitrogen. The chemical communication between roots and rhizobia begins in the rhizosphere. Using signature-tagged-Tn5 mutagenesis (STM) we performed a genome-wide screening for Ensifer meliloti genes that participate in colonizing the rhizospheres of alfalfa and other legumes. The analysis of ca. 6,000 mutants indicated that genes relevant for rhizosphere colonization account for nearly 2% of the rhizobial genome and that most (ca. 80%) are chromosomally located, pointing to the relevance and ancestral origin of the bacterial ability to colonize plant roots. The identified genes were related to metabolic functions, transcription, signal transduction, and motility/chemotaxis among other categories; with several ORFs of yet-unknown function. Most remarkably, we identified a subset of genes that impacted more severely the colonization of the roots of alfalfa than of pea. Further analyses using other plant species revealed that such early differential phenotype could be extended to other members of the Trifoliae tribe (Trigonella, Trifolium), but not the Fabeae and Phaseoleae tribes. The results suggest that consolidation of E. meliloti into its current symbiotic state should have occurred in a rhizobacterium that had already been adapted to rhizospheres of the Trifoliae tribe.

The Abyssinian pea (Pisum abyssinicum A. Br.), concerned in this review, is known from Ethiopia and Yemen, where it is cultivated along with the common pea (Pisum sativum L. subsp. sativum). The continuously reproduced notion of its possible spontaneous occurrence in the wild ascends to suppositions made in the XIX century and is not based on any actual data. P. abyssinicum is of practical interest owing to its extra early ripening and resistance to bacterial blight. Morphologically it is very similar to P. sativum but its crossability with it is bad as either seed or pollen parent. Traditionally this reproductive barrier was associated with karyological differences. The Abyssinian pea karyotype is variable as 1–2 reciprocal translocations were reported. At the same time there are accessions not differing from the standard karyotype of P. sativum with respect to reciprocal translocations, yet their crossability with the latter is very low and the pollen fertility of F1 and F2 hybrids is lowered. Data were reported on influence of the region of Linkage Group III, containing a gene known to participate in the conflict of nucleus and plastids in remote crosses of peas, on the pollen fertility of hybrids with abyssinian pea. With their karyological variability, the known accessions of the Abyssinian pea are very close to each other genetically, as they diverged just about 4000 years ago. The presence of alleles of molecular markers common with Pisum fulvum Sibth. et Smith on the one hand and P. sativum L. subsp. elatius (Bieb.) Schmalh. on the other hand evidences in favour of an old hypotheses by L.I. Govorov that the Abyssinian pea originated from their spontaneous hybrid. This spontaneous cross may have taken place under cultivation, in Yemen or Afar Depression. A representative of P. sativum subsp. elatius was revealed, the F1 hybrids of which with the Abyssinian pea as a seed parent had fully fertile pollen. P. abyssinicum× P. fulvum crosses provide the best hybrid seed outcome among remote crosses conducted, so that P. abyssinicum can be used as a ‘bridge’ for gene introgression from P. fulvum to P. sativum. Rather a high evel of reproductive isolation of the Abyssinian pea from other representatives of the genus conforms the biological species concept, however the disposition of P. abyssinicum accessions as a small cluster among accessions of P. sativum subsp. elatius on molecular phylogeny reconstructions violates the phylogenetic species concept. Most authors assume the Abyssinian pea as a species, Pisum abyssinicum, some as a subspecies, P. sativum subsp. abyssinicum (A. Br.) Berger. Perhaps it would be most correct to consider it as a hybridogenic species. Because of the recent subsuming of the genus Pisum L. into the genus Lathyrus and with respect to the existing name Lathyrus abyssinicus A. Br. (a synonym of L. sativus L.), the Abyssinian pea is given a new name Lathyrus schaeferi (A. Braun) Kosterin nomen novum pro Pisum abyssinicum A. Braun), in honour of Hanno Schaefer, who substantiated the revision of tribe Fabeae by molecular reconstruction of its phylogeny. New combinations of Lathyrus sectio Pisum (L.) Kosterin combinatio nova and Lathurus fulvus (Sibthrop et Smith) Kosterin combinatio nova are proposed.

Twenty-two rhizobia strains isolated from three distinct populations (North Ossetia, Dagestan, and Armenia) of a relict legume Vavilovia formosa were analysed to determine their position within Rhizobium leguminosarum biovar viciae (Rlv). These bacteria are described as symbionts of four plant genera Pisum, Vicia, Lathyrus, and Lens from the Fabeae tribe, of which Vavilovia is considered to be closest to its last common ancestor (LCA). In contrast to biovar viciae, bacteria from Rhizobium leguminosarum biovar trifolii (Rlt) inoculate plants from the Trifolieae tribe. Comparison of house-keeping (hkg: 16S rRNA, glnII, gltA, and dnaK) and symbiotic (sym: nodA, nodC, nodD, and nifH) genes of the symbionts of V. formosa with those of other Rlv and Rlt strains reveals a significant group separation, which was most pronounced for sym genes. A remarkable feature of the strains isolated from V. formosa was the presence of the nodX gene, which was commonly found in Rlv strains isolated from Afghanistan pea genotypes. Tube testing of different strains on nine plant species, including all genera from the Fabeae tribe, demonstrated that the strains from V. formosa nodulated the same cross inoculation group as the other Rlv strains. Comparison of nucleotide similarity in sym genes suggested that their diversification within sym-biotypes of Rlv was elicited by host plants. Contrariwise, that of hkg genes could be caused by either local adaptation to soil niches or by genetic drift. Long-term ecological isolation, genetic separation, and the ancestral position of V. formosa suggested that symbionts of V. formosa could be responsible for preserving ancestral genotypes of the Rlv biovar.

Beautiful Vavilovia [Vavilovia formosa (Stev.) Fed.] is a perennial legume of great importance for the evolution and taxonomy of the tribe Fabeae Rchb. The abundant data on its collection sites on the Caucasus Mountains, made during the past two centuries, were collated and analysed. The studied area covers the mountain ranges of both the Greater and Lesser Caucasus in Russian Federation, Georgia, Armenia and Azerbaijan, except the ranges in north-eastern and eastern Turkey and north-western Iran. The presented data are the results of an analysis of the herbarium collections of various institutions and available literature resources, providing novel information about 110 collection points. The analysed data allowed to specify the borders of the area in the region, as well as describe the features of the high-altitude distribution of V. formosa within the studied area, revealing the lower and upper altitude ranges as between 2021 and 3500 m above sea level. The results also indicate a reduction of the number of its populations, as well as the necessity and urgency of monitoring and protecting all the known locations of this highly endangered species.

During the process of domestication and selection reduction of genetic diversity of cultivated crops occurred. Currently the main interest of breeders is to transfer some of crop wild relatives’ genes to cultivated crops. Those genes of interest are related e.g. with desease and pest resistance or drought resistance. Hybridization of wild and cultivated species is prevented by reproductive isolation. The frequent phonomenon in hybrids is called nuclear-cytoplasmic incompatibility, which is manifested by reduced fertility, sterility or lethality. In this phenomenon occurs conflict between nuclear-encoded genes with genes encoded in the organellar genomes. The identified accD candidate gene responsible for nuclear-cytoplasmic incompatibility in pea is highly variable due to insertions and deletions. High variability of the accD gene was also confirmed in the genera Lathyrus and Vicia. Variability was observed in gene sequence lenghts caused by presence of indels and single nucleotide polymorphisms. In comparative analysis with other regions of cpDNA commonly used in phylogenetics, the region of the accD gene had the highest value of parsimonially informative sites. The phylogeny derived from the region of the accD gene corresponds to the phylogeny based on combined chloroplast markers, therefore the accD gene may be suitable for this type of analysis.

Lack of complete genomic information concerning Vicia sepium (Fabaceae: Fabeae) precludes investigations of evolution and populational diversity of this perennial high-protein forage plant suitable for cultivation in extreme conditions. Here, we present the complete and annotated chloroplast genome of this important wild resource plant. V. sepium chloroplast genome includes 76 protein-coding genes, 29 tRNA genes, 4 rRNA genes, and 1 pseudogene. Its 124,095 bp sequence has a loss of one inverted repeat (IR). The GC content of the whole genome, the protein-coding, intron, tRNA, rRNA, and intergenic spacer regions was 35.0%, 36.7%, 34.6%, 52.3%, 54.2%, and 29.2%, respectively. Comparative analyses with plastids from related genera belonging to Fabeae demonstrated that the greatest variation in the V. sepium genome length occurred in protein-coding regions. In these regions, some genes and introns were lost or gained; for example, ycf4, clpP intron, and rpl16 intron deletions and rpl20 and ORF292 insertions were observed. Twelve highly divergent regions, 66 simple sequence repeats (SSRs) and 27 repeat sequences were also found in these regions. Detailed evolutionary rate analysis of protein-coding genes showed that Vicia species exhibit additional interesting characteristics including positive selection of ccsA, clpP, rpl32, rpl33, rpoC1, rps15, rps2, rps4, and rps7, and the evolutionary rates of atpA, accD, and rps2 in Vicia are significantly accelerated. These genes are important candidate genes for understanding the evolutionary strategies of Vicia and other genera in Fabeae. The phylogenetic analysis showed that Vicia and Lens are included in the same clade and that Vicia is paraphyletic. These results provide evidence regarding the evolutionary history of the chloroplast genome.

The genus Vicia L., one of the earliest domesticated plant genera, is a member of the legume tribe Fabeae of the subfamily Papilionoideae (Fabaceae). The taxonomic history of this genus is extensive and controversial, which has hindered the development of taxonomic procedures and made it difficult to identify and share these economically important crop resources. Species identification through DNA barcoding is a valuable taxonomic classification tool. In this study, four DNA barcodes (ITS2, matK, rbcL and psbA-trnH) were evaluated on 110 samples that represented 34 taxonomically best-known species in the Vicia genus. Topologies of the phylogenetic trees based on an individual locus were similar. Individual locus-based analyses could not discriminate closely related Vicia species. We proposed a concatenated data approach to increase the resolving power of ITS2. The DNA barcodes matK, psbA-trnH and rbcL were used as an additional tool for phylogenetic analysis. Among the four barcodes, three-barcode combinations that included psbA-trnH with any two of the other barcodes (ITS2, matK or rbcL) provided the best discrimination among Vicia species. Species discrimination was assessed with bootstrap values and considered successful only when all the conspecific individuals formed a single clade. Through sequencing of these barcodes from additional Vicia accessions, 17 of the 34 known Vicia species could be identified with varying levels of confidence. From our analyses, the combined barcoding markers are useful in the early diagnosis of targeted Vicia species and can provide essential baseline data for conservation strategies, as well as guidance in assembling germplasm collections.

In most eukaryotes, centromere is determined by the presence of the centromere-specific histone variant CenH3. Two types of chromosome morphology are generally recognized with respect to centromere organization. Monocentric chromosomes possess a single CenH3-containing domain in primary constriction, whereas holocentric chromosomes lack the primary constriction and display dispersed distribution of CenH3. Recently, metapolycentric chromosomes have been reported in Pisum sativum, representing an intermediate type of centromere organization characterized by multiple CenH3-containing domains distributed across large parts of chromosomes that still form a single constriction. In this work, we show that this type of centromere is also found in other Pisum and closely related Lathyrus species, whereas Vicia and Lens genera, which belong to the same legume tribe Fabeae, possess only monocentric chromosomes. We observed extensive variability in the size of primary constriction and the arrangement of CenH3 domains both between and within individual Pisum and Lathyrus species, with no obvious correlation to genome or chromosome size. Search for CenH3 gene sequences revealed two paralogous variants, CenH3-1 and CenH3-2, which originated from a duplication event in the common ancestor of Fabeae species. The CenH3-1 gene was subsequently lost or silenced in the lineage leading to Vicia and Lens, whereas both genes are retained in Pisum and Lathyrus. Both of these genes appear to have evolved under purifying selection and produce functional CenH3 proteins which are fully colocalized. The findings described here provide the first evidence for a highly dynamic centromere structure within a group of closely related species, challenging previous concepts of centromere evolution.

The temperate and herbaceous genus Vicia L. is a member of the legume tribe Fabeae of the subfamily Papilionoideae. The genus Vicia comprises 166 annual or perennial species distributed mainly in Europe, Asia, and North America, but also extending to the temperate regions of South America and tropical Africa. The use of simple sequence repeat (SSR) markers for Vicia species has not been investigated as extensively as for other crop species. In this study, we assessed the potential for cross-species amplification of cDNA microsatellite markers developed from common vetch (Vicia sativa subsp. sativa). For cross-species amplification of the SSRs, amplification was carried out with genomic DNA isolated from two to eight accessions of 22 different Vicia species. For individual species or subspecies, the transferability rates ranged from 33% for V. ervilia to 82% for V. sativa subsp. nigra with an average rate of 52.0%. Because the rate of successful SSR marker amplification generally correlates with genetic distance, these SSR markers are potentially useful for analyzing genetic relationships between or within Vicia species.

Vavilovia formosa is a relict leguminous plant growing in hard-to-reach habitats in the rocky highlands of the Caucasus and Middle East, and it is considered as the putative closest living relative of the last common ancestor (LCA) of the Fabeae tribe. Symbionts of Vavilovia belonging to Rhizobium leguminosarum bv. viciae compose a discrete group that differs from the other strains, especially in the nucleotide sequences of the symbiotically specialised (sym) genes. Comparison of the genomes of Vavilovia strains with the reference group composed of R. leguminosarum bv. viciae strains isolated from Pisum and Vicia demonstrated that the vavilovia strains have a set of genomic features, probably indicating the important stages of microevolution of the symbiotic system. Specifically, symbionts of Vavilovia (considered as an ancestral group) demonstrated a scattered arrangement of sym genes (&gt, 90 kb cluster on pSym), with the location of nodT gene outside of the other nod operons, the presence of nodX and fixW, and the absence of chromosomal fixNOPQ copies. In contrast, the reference (derived) group harboured sym genes as a compact cluster (&lt, 60 kb) on a single pSym, lacking nodX and fixW, with nodT between nodN and nodO, and possessing chromosomal fixNOPQ copies. The TOM strain, obtained from nodules of the primitive &ldquo, Afghan&rdquo, peas, occupied an intermediate position because it has the chromosomal fixNOPQ copy, while the other features, the most important of which is presence of nodX and fixW, were similar to the Vavilovia strains. We suggest that genome evolution from the ancestral to the derived R. leguminosarum bv. viciae groups follows the &ldquo, gain-and-loss of sym genes&rdquo, and the &ldquo, compaction of sym cluster&rdquo, strategies, which are common for the macro-evolutionary and micro-evolutionary processes. The revealed genomic features are in concordance with a relict status of the vavilovia strains, indicating that V. formosa coexists with ancestral microsymbionts, which are presumably close to the LCA of R. leguminosarum bv. viciae.

The topic of this work was studied genetic diversity and phylogeny of selected wild species Lathyrus neurolobus Boiss. & Heldr., which is closely related to cultivated pea, using modern methods of molecular phylogenetics. Genotypes of L. neurolobus were obtained from Department of Botany at Palacký University in Olomouc, genomic DNA was isolated of these genotypes and samples were subjected to analysis using SSR and iPBS markers. It was found that for assessment of genetic diversity is suitable method of iPBS markers, where the average value of polymorphic information content is very high (PIC=0,928). According to evaluated markers polymorphism and assembled dendrograms was found that for search of relationship between place of origin and placement in dendrogram, will be appropriate the method of SSR markers, but only in case of selection informative markers. There was also confirmed transferability of SSR markers designed for pea to wild species of another genus.

Vavilovia formosa is one of five genera in tribe Fabeae, (Fabaceae, Leguminosae) with close phylogenetic relationships to Pisum. It grows in subalpine and alpine levels in Armenia, Azerbaijan, Georgia, Iran, Iraq, Lebanon, Russia and Turkey and is recognized as an endangered and protected plant. This study was conducted to reveal its intraspecific variability, as well as to predict the past, extant and future species distribution range. We analysed 51 accessions with common phylogenetic markers (trnF-trnL, trnS-trnG, matK, rbcL, psbA-trnH and ITS). These represent in total up to 2551 bp of chloroplast and 664 bp of nuclear sequences per sample. Two populations from Turkey and Armenia were analysed for genetic diversity by AFLP. Leaf morphometry was conducted on 1457 leaflets from 43 specimens. Extracted bioclimatic parameters were used for niche-modelling approach. Analysis of cpDNA revealed two haplotypes, 12 samples from Armenia, Daghestan, Nakhichevan and Iran belonged to H1 group, while 39 samples of all Turkish and part of Armenian were in H2 group. The mean intrapopulation diversity based on AFLP was low (H E = 0.088) indicating limited outcrossing rate. A significantly positive correlation between geographical latitude and leaf area ( $$\rho$$ = 0.527, p

Chlorinated auxin (4-chloroindole-3-acetic acid, 4-Cl-IAA), a highly potent plant hormone, was once thought to be restricted to species of the tribe Fabeae within the Fabaceae, until we recently detected this hormone in the seeds of Medicago, Melilotus and Trifolium species. The absence of 4-Cl-IAA in the seeds of the cultivated species Cicer aeritinum from the Cicerae tribe, immediately basal to the Fabeae and Trifolieae tribes, suggested a single evolutionary origin of 4-Cl-IAA. Here, we provide a more robust phylogenetic placement of the ability to produce chlorinated auxin by screening key species spanning this evolutionary transition. We report no detectable level of 4-Cl-IAA in Cicer echinospermum (a wild relative of Cicer aeritinum) and 4 species (Galega officinalis, Parochetus communis, Astragalus propinquus and A. sinicus) from tribes or clades more basal or sister to the Cicerae tribe. We did detect 4-Cl-IAA in the dry seeds of four species from the genus Ononis that are either basal to the genera Medicago, Melilotus and Trigonella or basal to, but still within, the Fabeae and Trifolieae (ex. Parochetus) clades. We conclude that the single evolutionary origin of this hormone in seeds can be used as a phylogenetically informative trait within the Fabaceae.

The plastid genome retains several features from its cyanobacterial-like ancestor, one being the co-transcriptional organization of genes into operon-like structures. Some plastid operons have been identified but undoubtedly many more remain undiscovered. Here we utilize the highly variable plastome structure that exists within certain legumes of the inverted repeat lost clade (IRLC) to find conserved gene clusters. These plastomes exhibit an unusually high frequency of translocations and inversions. We analysed the plastomes of 23 legume species and identified 32 locally collinear blocks (LCBs), which are regions within the plastid genomes that occur in different orientation and/or order among the plastid genomes but are themselves free from internal rearrangements. Several represent gene clusters that have previously been recognized as plastid operons. It appears that the number of LCBs has reached saturation in our data set, suggesting that these LCBs are not random, but likely represent legume plastid operons protected from internal rearrangement by functional constraint. Some of the LCBs we identify, such as psbD/C/Z, are previously known plastid operons. Others, such as rpl32-ndhF-psbA-matK-rbcL-atpB-atpE, may represent novel polycistronic operons in legumes.

6 páginas; 6 Tablas; 3 Figuras, The benefits of polyphenols have been widely demonstrated in recent decades. In order to find new species with a high biological functionality, the antioxidant activity of the polyphenol extracts from seeds of 50 taxa of tribe Fabeae (Lathyrus, Lens, Pisum, and Vicia) from Spain has been studied. Considering the average concentration obtained from the data in the four genera of the Fabeae tribe, Pisum and Lathyrus show the highest average polyphenol concentration. The highest specific antioxidant activity as well as the antioxidant activity coefficient was observed in Pisum and Vicia. However, with respect to the total antioxidant activity, the highest average value was observed in Lathyrus and Pisum. The results obtained reveal that many of the wild taxa examined could be potential source of antioxidants., This work was financed by Grant AGR-711 from Junta de Andalucía (Spain).

Premise of the study In angiosperm seeds, the developing embryo acquires nutrients via a suspensor that typically undergoes programmed cell death (PCD) at the early cotyledon stage. However, in Leguminosae (the third largest angiosperm family), the suspensors can disappear at the heart-shaped stage (i.e., prior to the cotyledon stage) or still persist at the cotyledon stage. Here, in a comprehensive survey of legume suspensors and embryos, the variation and the evolutionary direction of timing of suspensor PCD in Leguminosae were characterized, and systematic implications were evaluated. Methods Suspensor development and morphology for 66 leguminous species from 49 genera, 21 tribes, and 3 subfamilies were comparatively studied using standard paraffin sectioning and light microscopy. Key results Three patterns of suspensor PCD were observed at the early cotyledon stage. (A) The suspensor persisted. (B) The suspensor separated from the wall of the embryo sac and persisted as a vestige at the radicle apex. (C) The suspensor disappeared completely, and the absorption of nutrients by embryo was carried out via a "contact zone" between the embryo and the endosperm. Pattern C of early suspensor PCD was found only in the tribe Fabeae. An ancestral character reconstruction revealed that the long-lived suspensors of pattern A represented a plesiomorphic condition in Leguminosae and that the suspensors of pattern C evolved only once in the common ancestor of Fabeae. Conclusions In Leguminosae, short-lived suspensors have thus evolved multiple times from long-lived suspensors. It remains largely unknown, however, how the embryo acquires nutrients after the early suspensor PCD.

The aims of the present study were (i) to compare the anatomical structures of roots from legume species belonging to the tribes Aeschynomeneae, Fabeae (syn. Vicieae), and Trifolieae (Papilionoideae); (ii) to characterize those developmental stages of roots that are most useful for comparative studies; (iii) to characterize root developmental patterns during their growth from primary to adult structures; and (iv) to identify developmental patterns that are typical for particular tribes within this plant group. To this end, serial transverse cuts of the main roots of 20 species belonging to the above-mentioned tribes were made from the root tip to the root collar. Vessel density, vessel diameter, secondary cortex area, and xylem area were quantified using appropriate software. Based on root ontogeny, four stages giving evidence for important developmental events were chosen based on which a comparison of the species-specific structures became possible. The first stage corresponds to the primary structure of a root. The second stage corresponds to the onset of cambium and phellogen division, when their first division products become differentiated. The third and fourth stages correspond to adult roots with a well-developed secondary structure. These developmental stages that allowed between-species comparison turned out to be useful characterising those patterns that best typify a particular tribe within the subfamily. Vessel density, vessel diameter, and the xylem transverse area were found to differ significantly between the tribes examined. Some of the analyzed morphological variables had a tribe-specific consistency, so that, together with other characteristics, they should be included in approaches to clarify systematic problems in the legume family.

The carbohydrate-binding sequences of the lectin genes from spring vetchling Lathyrus vernus (L.) Bernh., marsh vetchling L. palustris (L.), and Gmelin’s vetchling L. gmelinii (Fitsch) (Fabaceae) were determined. Computer-aided analysis revealed substantial differences between nucleotide and predicted amino acid sequences of the lectin gene regions examined in each of the three vetchling species tested. In the phylogenetic trees based on sequence similarity of carbohydrate-biding regions of legume lectins, the sequences examined formed a compact cluster with the lectin genes of the plants belonging to the tribe Fabeae. In each plant, L. vernus, L. palustris, and L. gmelinii, three different lectin-encoding genes were detected. Most of the substitutions were identified within the gene sequence responsible for coding the carbohydrate-binding protein regions. This finding may explain different affinity of these lectins to different carbohydrates, and as a consequence, can affect the plant host specificity upon development of symbiosis with rhizobium bacteria.

Summary: A considerable number of diverse ornamental forms of Lathyrus odoratus exist which require careful conservation if they are not to be lost. Other ornamental Lathyrus species may have potential for increasing their diversity. A seedbank has been established in the United Kingdom to conserve this diversity and make the material readily available to researchers and growers throughout the world. Conventional hybridisation provides an opportunity for the existing diversity in L. odoratus to be extended. Opportunities also exist to create improved decorative forms and new colours in some other species through intra-specifi c hybridisation. Inter-specifi c hybridisation within the genus is in its infancy but early results suggest exciting improvements might be introduced by this method. Such work might also provide benefi ts for comparative genomics in the tribe Fabeae.

The tribeFabeae(formerlyVicieae) contains some of humanity's most important grain legume crops, namelyLathyrus(grass pea/sweet pea/chickling vetches; about 160 species);Lens(lentils; 4 species);Pisum(peas; 3 species);Vicia(vetches; about 140 species); and the monotypic genusVavilovia.Reconstructing the phylogenetic relationships within this group is essential for understanding the origin and diversification of these crops. Our study, based on molecular data, has positionedPisumgenetically betweenViciaandLathyrusand shows it to be closely allied toVavilovia.A study of phylogeography, using a combination of plastid and nuclear markers, suggested that wild pea spread from its centre of origin, the Middle East, eastwards to the Caucasus, Iran and Afghanistan, and westwards to the Mediterranean. To allow for direct data comparison, we utilized model-based Bayesian Analysis of Population structure (BAPS) software on 4429Pisumaccessions from three large world germplasm collections that include both wild and domesticated pea analyzed by retrotransposon-based markers. An analysis of genetic diversity identified separate clusters containing wild material, distinguishingPisum fulvum,P. elatiusandP. abyssinicum, supporting the view of separate species or subspecies. Moreover, accessions of domesticated peas of Afghan, Ethiopian and Chinese origin were distinguished. In addition to revealing the genetic relationships, these results also provided insight into geographical and phylogenetic partitioning of genetic diversity. This study provides the framework for defining globalPisumgermplasm diversity as well as suggesting a model for the domestication of the cultivated species. These findings, together with gene-based sequence analysis, show that although introgression from wild species has been common throughout pea domestication, much of the diversity still resides in wild material and could be used further in breeding. Moreover, although existing collections contain over 10,000 pea accessions, effort should be directed towards collecting more wild material in order to preserve the genetic diversity of the species.

Vavilovia (Vavilovia formosa (Stev.) Fed.) belongs to the tribe Fabeae along with peas, vetchlings, vetches and lentils. It prefers high mountain areas in Armenia, Azerbaijan, Georgia, Iran, Iraq, Lebanon, Russia, Syria and Turkey. A true success in the ex situ conservation has recently been achieved, within the display plot Flora and Vegetation of Armenia in the Yerevan Botanic Garden. The hybridization between vavilovia and other Fabeae was done in the N. I. Vavilov Institute of Plant Industry with F1 seeds and F1 plants that did not produce the next generation. The recent molecular research showed that vavilovia belongs to a Lathyrus-Pisum-Vavilovia clade with a clearly distinct status. Vavilovija (Vavilovia formosa (Stev.) Fed.) pripada tribusu Fabeae, zajedno sa graškovima, grahorima, grahoricama i sočivima. Vavilovija raste u visokoplaninskim oblastima Jermenije, Azerbejdžana, Gruzije, Iraka, Irana, Libana, Rusije, Sirije i Turske. Pravi uspeh u ex situ konzervaciji postignut je nedavno u okviru izložbenog polja 'Flora i vegetacija Jermenije' u botaničkoj bašti u Jerevanu. Hibridizacija između vavilovije i graška izvršena je u institutu Vavilov, sa F1 semenima i F1 biljkama koje nisu uspele da daju sledeće pokoljenje. Skorašnja molekularna istraživanja pokazala su da vavilovija pripada grupi Lathyrus - Pisum - Vavilovia sa jasno izraženim posebnim statusom.

Nodules in the family Leguminosae come in many different shapes and forms, depending partly on the host that bears them. This review focuses on the peripheral tissues that surround the infected tissues of four anatomically distinct classes of nodules: nodules with indeterminate meristems (from the Trifolieae and Fabeae tribes); desmodioid nodules with determinate meristems (from the Phaseoleae and Loteae tribes); aeschynomenoid nodules ( Arachis hypogaea L., peanut); and lupinoid nodules ( Lupinus sp. L., lupine). I have especially stressed the importance of the three-dimensionality of the organ, because not all nodules display a radial symmetry as it is often assumed. The goal of this review is to provide a strong base of nodule structure so that forthcoming molecular studies can integrate this information into their approach.

The approximately 27 New World species of Vicia (tribe Fabeae, family Leguminosae) were classified into four stylar type groups as follows: (1) a laterally compressed and evenly hairy stylar type (Le-type) group, (2) a dorsiventrally compressed and abaxially tufted hairy stylar type (Dabt-type) group, (3) a dorsiventrally compressed and evenly hairy stylar type (De-type) group, and (4) V. leuncophaea that is characterized by an arcuate style with a dense ring of stylar hairs at a considerable distance from the stigma. In the present study, the stylar distinctions among the groups were confirmed by morphological and anatomical studies on the stylar characters of representative species of the groups. The phylogenetic positions of these groups were then assessed using molecular phylogenetic analysis based on sequences from the nuclear ribosomal DNA (nrDNA) internal transcribed spacer (ITS) region of the representative species. The New World Le-type stylar group was revealed to be a sister group to t...

Morphological and geographic variation in two Lathyrus and two Vicia species complexes is reviewed. The following new combinations are proposed: Lathyrus nevadensis S. Wats. var. cusickii (S. Wats.) Broich comb. nov., Lathyrus lanszwertii Kellogg var. sandbergii (T. White) Broich comb. nov., Vicia ludoviciana Nutt. ex T. & G. var. leavenworthii (T. & G.) Broich comb. nov., and Vicia nigricans H. & A. var. gigantea (Hooker) Broich comb. nov.

The differential accumulation and elimination of repetitive DNA are key drivers of genome size variation in flowering plants, yet there have been few studies which have analysed how different types of repeats in related species contribute to genome size evolution within a phylogenetic context. This question is addressed here by conducting large-scale comparative analysis of repeats in 23 species from four genera of the monophyletic legume tribe Fabeae, representing a 7.6-fold variation in genome size. Phylogenetic analysis and genome size reconstruction revealed that this diversity arose from genome size expansions and contractions in different lineages during the evolution of Fabeae. Employing a combination of low-pass genome sequencing with novel bioinformatic approaches resulted in identification and quantification of repeats making up 55?83% of the investigated genomes. In turn, this enabled an analysis of how each major repeat type contributed to the genome size variation encountered. Differential accumulation of repetitive DNA was found to account for 85% of the genome size differences between the species, and most (57%) of this variation was found to be driven by a single lineage of Ty3/gypsy LTR-retrotransposons, the Ogre elements. Although the amounts of several other lineages of LTR-retrotransposons and the total amount of satellite DNA were also positively correlated with genome size, their contributions to genome size variation were much smaller (up to 6%). Repeat analysis within a phylogenetic framework also revealed profound differences in the extent of sequence conservation between different repeat types across Fabeae. In addition to these findings, the study has provided a proof of concept for the approach combining recent developments in sequencing and bioinformatics to perform comparative analyses of repetitive DNAs in a large number of non-model species without the need to assemble their genomes.

Lathyrus (Leguminosae; Papilionoideae) is the largest genus in tribe Fabeae and exhibits an intriguing extratropical distribution. We studied the systematics and biogeography of Lathyrus using sequence data, from accessions representing 53 species, for the internal transcribed spacer plus 5.8S-coding region of nuclear ribosomal DNA as well as the trnL-F and trnS-G regions of chloroplast DNA. Our results generally supported recent morphology-based classifications, resolving clades corresponding to sections Lathyrus and Lathyrostylis, but question the monophyly of the large, widespread section Orobus sensu Asmussen and Liston. Sections Orobus, Aphaca, and Pratensis form a predominantly northern Eurasian-New World clade. Within this clade, the North American and eastern Eurasian species, including both Holarctic species (L. palustris and L. japonicus), form a transberingian clade of relatively recent origin and diversification. The South American Notolathyrus group is distant from this transberingian lineage and should be reinstated as a distinct section within the northern Eurasian-New World clade. The Notolathyrus lineage reached the New World most probably through long-distance dispersal from Eurasia. The remaining sections in the genus are centered on the Mediterranean region.