19 results on '"decorated nanoparticles"'
Search Results
2. Prediction of Anti-Glioblastoma Drug-Decorated Nanoparticle Delivery Systems Using Molecular Descriptors and Machine Learning
- Author
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Cristian R. Munteanu, Pablo Gutiérrez-Asorey, Manuel Blanes-Rodríguez, Ismael Hidalgo-Delgado, María de Jesús Blanco Liverio, Brais Castiñeiras Galdo, Ana B. Porto-Pazos, Marcos Gestal, Sonia Arrasate, and Humbert González-Díaz
- Subjects
decorated nanoparticles ,drug delivery ,anti-glioblastoma ,big data ,perturbation theory ,machine learning ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The theoretical prediction of drug-decorated nanoparticles (DDNPs) has become a very important task in medical applications. For the current paper, Perturbation Theory Machine Learning (PTML) models were built to predict the probability of different pairs of drugs and nanoparticles creating DDNP complexes with anti-glioblastoma activity. PTML models use the perturbations of molecular descriptors of drugs and nanoparticles as inputs in experimental conditions. The raw dataset was obtained by mixing the nanoparticle experimental data with drug assays from the ChEMBL database. Ten types of machine learning methods have been tested. Only 41 features have been selected for 855,129 drug-nanoparticle complexes. The best model was obtained with the Bagging classifier, an ensemble meta-estimator based on 20 decision trees, with an area under the receiver operating characteristic curve (AUROC) of 0.96, and an accuracy of 87% (test subset). This model could be useful for the virtual screening of nanoparticle-drug complexes in glioblastoma. All the calculations can be reproduced with the datasets and python scripts, which are freely available as a GitHub repository from authors.
- Published
- 2021
- Full Text
- View/download PDF
3. Prediction of Antimalarial Drug-Decorated Nanoparticle Delivery Systems with Random Forest Models
- Author
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Diana V. Urista, Diego B. Carrué, Iago Otero, Sonia Arrasate, Viviana F. Quevedo-Tumailli, Marcos Gestal, Humbert González-Díaz, and Cristian R. Munteanu
- Subjects
decorated nanoparticles ,drug delivery ,antimalarial compounds ,big data ,Perturbation Theory ,Machine Learning ,Biology (General) ,QH301-705.5 - Abstract
Drug-decorated nanoparticles (DDNPs) have important medical applications. The current work combined Perturbation Theory with Machine Learning and Information Fusion (PTMLIF). Thus, PTMLIF models were proposed to predict the probability of nanoparticle–compound/drug complexes having antimalarial activity (against Plasmodium). The aim is to save experimental resources and time by using a virtual screening for DDNPs. The raw data was obtained by the fusion of experimental data for nanoparticles with compound chemical assays from the ChEMBL database. The inputs for the eight Machine Learning classifiers were transformed features of drugs/compounds and nanoparticles as perturbations of molecular descriptors in specific experimental conditions (experiment-centered features). The resulting dataset contains 107 input features and 249,992 examples. The best classification model was provided by Random Forest, with 27 selected features of drugs/compounds and nanoparticles in all experimental conditions considered. The high performance of the model was demonstrated by the mean Area Under the Receiver Operating Characteristics (AUC) in a test subset with a value of 0.9921 ± 0.000244 (10-fold cross-validation). The results demonstrated the power of information fusion of the experimental-centered features of drugs/compounds and nanoparticles for the prediction of nanoparticle–compound antimalarial activity. The scripts and dataset for this project are available in the open GitHub repository.
- Published
- 2020
- Full Text
- View/download PDF
4. Prediction of Anti-Glioblastoma Drug-Decorated Nanoparticle Delivery Systems Using Molecular Descriptors and Machine Learning
- Author
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Manuel Blanes-Rodríguez, Cristian R. Munteanu, Brais Castiñeiras Galdo, Ismael Hidalgo-Delgado, Sonia Arrasate, Marcos Gestal, Ana B. Porto-Pazos, Humbert González-Díaz, María de Jesús Blanco Liverio, Pablo Gutiérrez-Asorey, Ikerdata, Instituto de Salud Carlos III, European Commission, Xunta de Galicia, Ministerio de Economía y Competitividad (España), Eusko Jaurlaritza, and Ikerbasque Basque Foundation for Science
- Subjects
Computer science ,Databases, Pharmaceutical ,Perturbation theory ,computer.software_genre ,User-Computer Interface ,Drug Delivery Systems ,big data ,Biology (General) ,Spectroscopy ,computer.programming_language ,Drug Carriers ,Brain Neoplasms ,General Medicine ,Decorated nanoparticles ,chEMBL ,Computer Science Applications ,Chemistry ,machine learning ,QH301-705.5 ,Decision tree ,Antineoplastic Agents ,Machine learning ,Catalysis ,Article ,Inorganic Chemistry ,Big data ,Molecular descriptor ,Classifier (linguistics) ,Anti-glioblastoma ,Humans ,Physical and Theoretical Chemistry ,Molecular Biology ,QD1-999 ,perturbation theory ,Virtual screening ,Receiver operating characteristic ,business.industry ,Organic Chemistry ,Experimental data ,ChEMBL database ,Python (programming language) ,anti-glioblastoma ,Drug Design ,Drug delivery ,drug delivery ,Nanoparticles ,decorated nanoparticles ,Artificial intelligence ,Drug Screening Assays, Antitumor ,business ,Glioblastoma ,computer ,Databases, Chemical - Abstract
The theoretical prediction of drug-decorated nanoparticles (DDNPs) has become a very important task in medical applications. For the current paper, Perturbation Theory Machine Learning (PTML) models were built to predict the probability of different pairs of drugs and nanoparticles creating DDNP complexes with anti-glioblastoma activity. PTML models use the perturbations of molecular descriptors of drugs and nanoparticles as inputs in experimental conditions. The raw dataset was obtained by mixing the nanoparticle experimental data with drug assays from the ChEMBL database. Ten types of machine learning methods have been tested. Only 41 features have been selected for 855,129 drug-nanoparticle complexes. The best model was obtained with the Bagging classifier, an ensemble meta-estimator based on 20 decision trees, with an area under the receiver operating characteristic curve (AUROC) of 0.96, and an accuracy of 87% (test subset). This model could be useful for the virtual screening of nanoparticle-drug complexes in glioblastoma. All the calculations can be reproduced with the datasets and python scripts, which are freely available as a GitHub repository from authors., The APC was funded by IKERDATA, S.L. under grant 3/12/DP/2021/00102, This work is supported by the “Collaborative Project in Genomic Data Integration (CICLOGEN)” PI17/01826 funded by the Carlos III Health Institute, from the Spanish National Plan for Scientific and Technical Research and Innovation 2013–2016 and the European Regional Development Funds (FEDER)—“A way to build Europe”. This project was also supported by the General Directorate of Culture, Education and University Management of Xunta de Galicia (Ref. ED431G/01, ED431D 2017/16), the “Galician Network for Colorectal Cancer Research” (Ref. ED431D 2017/23), Competitive Reference Groups (Ref. ED431C 2018/49), and the Spanish Ministry of Economy and Competitiveness via funding of the unique installation BIOCAI (UNLC08-1E-002, UNLC13-13-3503) and the European Regional Development Funds (FEDER). Lastly, the authors also acknowledge research grants from the Ministry of Economy and Competitiveness, MINECO, Spain (FEDER CTQ2016-74881-P), the Basque government (IT1045-16), and the kind support of Ikerbasque, Basque Foundation for Science and Zitek.
- Published
- 2021
5. PEGylated polylactide (PLA) and poly (lactic-co-glycolic acid) (PLGA) copolymers for the design of drug delivery systems
- Author
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Perinelli, Diego Romano, Cespi, Marco, Bonacucina, Giulia, and Palmieri, Giovanni Filippo
- Published
- 2019
- Full Text
- View/download PDF
6. Prediction of Anti-Glioblastoma Drug-Decorated Nanoparticle Delivery Systems Using Molecular Descriptors and Machine Learning
- Author
-
Química Orgánica e Inorgánica, Kimika Organikoa eta Ez-Organikoa, Munteanu, Cristian R., Gutiérrez-Asorey, Pablo, Blanes-Rodríguez, Manuel, Hidalgo-Delgado, Ismael, Blanco Liverio, María de Jesús, Castiñeiras Galdo, Brais, Porto-Pazos, Ana B., Gestal, Marcos, Arrasate Gil, Sonia, González Díaz, Humberto, Química Orgánica e Inorgánica, Kimika Organikoa eta Ez-Organikoa, Munteanu, Cristian R., Gutiérrez-Asorey, Pablo, Blanes-Rodríguez, Manuel, Hidalgo-Delgado, Ismael, Blanco Liverio, María de Jesús, Castiñeiras Galdo, Brais, Porto-Pazos, Ana B., Gestal, Marcos, Arrasate Gil, Sonia, and González Díaz, Humberto
- Abstract
The theoretical prediction of drug-decorated nanoparticles (DDNPs) has become a very important task in medical applications. For the current paper, Perturbation Theory Machine Learning (PTML) models were built to predict the probability of different pairs of drugs and nanoparticles creating DDNP complexes with anti-glioblastoma activity. PTML models use the perturbations of molecular descriptors of drugs and nanoparticles as inputs in experimental conditions. The raw dataset was obtained by mixing the nanoparticle experimental data with drug assays from the ChEMBL database. Ten types of machine learning methods have been tested. Only 41 features have been selected for 855,129 drug-nanoparticle complexes. The best model was obtained with the Bagging classifier, an ensemble meta-estimator based on 20 decision trees, with an area under the receiver operating characteristic curve (AUROC) of 0.96, and an accuracy of 87% (test subset). This model could be useful for the virtual screening of nanoparticle-drug complexes in glioblastoma. All the calculations can be reproduced with the datasets and python scripts, which are freely available as a GitHub repository from authors. View Full-Text
- Published
- 2021
7. Prediction of Anti-Glioblastoma Drug-Decorated Nanoparticle Delivery Systems Using Molecular Descriptors and Machine Learning
- Author
-
Ikerdata, Instituto de Salud Carlos III, European Commission, Xunta de Galicia, Ministerio de Economía y Competitividad (España), Eusko Jaurlaritza, Ikerbasque Basque Foundation for Science, Munteanu, Cristian Robert, Gutiérrez-Asorey, Pablo, Blanes-Rodríguez, Manuel, Hidalgo-Delgado, Ismael, Blanco Liverio, María de Jesús, Castiñeiras Galdo, Brais, Porto-Pazos, Ana B., Gestal, Marcos, Arrasate, Sonia, González-Díaz, Humberto, Ikerdata, Instituto de Salud Carlos III, European Commission, Xunta de Galicia, Ministerio de Economía y Competitividad (España), Eusko Jaurlaritza, Ikerbasque Basque Foundation for Science, Munteanu, Cristian Robert, Gutiérrez-Asorey, Pablo, Blanes-Rodríguez, Manuel, Hidalgo-Delgado, Ismael, Blanco Liverio, María de Jesús, Castiñeiras Galdo, Brais, Porto-Pazos, Ana B., Gestal, Marcos, Arrasate, Sonia, and González-Díaz, Humberto
- Abstract
The theoretical prediction of drug-decorated nanoparticles (DDNPs) has become a very important task in medical applications. For the current paper, Perturbation Theory Machine Learning (PTML) models were built to predict the probability of different pairs of drugs and nanoparticles creating DDNP complexes with anti-glioblastoma activity. PTML models use the perturbations of molecular descriptors of drugs and nanoparticles as inputs in experimental conditions. The raw dataset was obtained by mixing the nanoparticle experimental data with drug assays from the ChEMBL database. Ten types of machine learning methods have been tested. Only 41 features have been selected for 855,129 drug-nanoparticle complexes. The best model was obtained with the Bagging classifier, an ensemble meta-estimator based on 20 decision trees, with an area under the receiver operating characteristic curve (AUROC) of 0.96, and an accuracy of 87% (test subset). This model could be useful for the virtual screening of nanoparticle-drug complexes in glioblastoma. All the calculations can be reproduced with the datasets and python scripts, which are freely available as a GitHub repository from authors.
- Published
- 2021
8. Prediction of Anti-Glioblastoma Drug-Decorated Nanoparticle Delivery Systems Using Molecular Descriptors and Machine Learning
- Author
-
Munteanu, Cristian-Robert, Gutiérrez-Asorey, Pablo, Blanes-Rodríguez, Manuel, Hidalgo-Delgado, Ismael, Blanco Liverio, María de Jesús, Galdo, Brais, Porto-Pazos, Ana B., Gestal, M., Arrasate, Sonia, González-Díaz, Humberto, Munteanu, Cristian-Robert, Gutiérrez-Asorey, Pablo, Blanes-Rodríguez, Manuel, Hidalgo-Delgado, Ismael, Blanco Liverio, María de Jesús, Galdo, Brais, Porto-Pazos, Ana B., Gestal, M., Arrasate, Sonia, and González-Díaz, Humberto
- Abstract
[Abstract] The theoretical prediction of drug-decorated nanoparticles (DDNPs) has become a very important task in medical applications. For the current paper, Perturbation Theory Machine Learning (PTML) models were built to predict the probability of different pairs of drugs and nanoparticles creating DDNP complexes with anti-glioblastoma activity. PTML models use the perturbations of molecular descriptors of drugs and nanoparticles as inputs in experimental conditions. The raw dataset was obtained by mixing the nanoparticle experimental data with drug assays from the ChEMBL database. Ten types of machine learning methods have been tested. Only 41 features have been selected for 855,129 drug-nanoparticle complexes. The best model was obtained with the Bagging classifier, an ensemble meta-estimator based on 20 decision trees, with an area under the receiver operating characteristic curve (AUROC) of 0.96, and an accuracy of 87% (test subset). This model could be useful for the virtual screening of nanoparticle-drug complexes in glioblastoma. All the calculations can be reproduced with the datasets and python scripts, which are freely available as a GitHub repository from authors.
- Published
- 2021
9. Prediction of Antimalarial Drug-Decorated Nanoparticle Delivery Systems with Random Forest Models
- Author
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Urista, Diana V., Carrué, Diego B., Otero, Iago, Arrasate, Sonia, Quevedo‐Tumailli, Viviana F., Gestal, M., González-Díaz, Humberto, Munteanu, Cristian-Robert, Urista, Diana V., Carrué, Diego B., Otero, Iago, Arrasate, Sonia, Quevedo‐Tumailli, Viviana F., Gestal, M., González-Díaz, Humberto, and Munteanu, Cristian-Robert
- Abstract
[Abstract]: Drug-decorated nanoparticles (DDNPs) have important medical applications. The current work combined Perturbation Theory with Machine Learning and Information Fusion (PTMLIF). Thus, PTMLIF models were proposed to predict the probability of nanoparticle–compound/drug complexes having antimalarial activity (against Plasmodium). The aim is to save experimental resources and time by using a virtual screening for DDNPs. The raw data was obtained by the fusion of experimental data for nanoparticles with compound chemical assays from the ChEMBL database. The inputs for the eight Machine Learning classifiers were transformed features of drugs/compounds and nanoparticles as perturbations of molecular descriptors in specific experimental conditions (experiment-centered features). The resulting dataset contains 107 input features and 249,992 examples. The best classification model was provided by Random Forest, with 27 selected features of drugs/compounds and nanoparticles in all experimental conditions considered. The high performance of the model was demonstrated by the mean Area Under the Receiver Operating Characteristics (AUC) in a test subset with a value of 0.9921 ± 0.000244 (10-fold cross-validation). The results demonstrated the power of information fusion of the experimental-centered features of drugs/compounds and nanoparticles for the prediction of nanoparticle–compound antimalarial activity. The scripts and dataset for this project are available in the open GitHub repository.
- Published
- 2020
10. Prediction of Antimalarial Drug-Decorated Nanoparticle Delivery Systems with Random Forest Models
- Author
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Química orgánica II, Kimika organikoa II, Urista, Diana V., Carrué, Diego B., Otero, Iago, Arrasate Gil, Sonia, Quevedo Tumailli, Viviana F., Gestal, Marcos, González Díaz, Humberto, Munteanu, Cristian R., Química orgánica II, Kimika organikoa II, Urista, Diana V., Carrué, Diego B., Otero, Iago, Arrasate Gil, Sonia, Quevedo Tumailli, Viviana F., Gestal, Marcos, González Díaz, Humberto, and Munteanu, Cristian R.
- Abstract
Drug-decorated nanoparticles (DDNPs) have important medical applications. The current work combined Perturbation Theory with Machine Learning and Information Fusion (PTMLIF). Thus, PTMLIF models were proposed to predict the probability of nanoparticle–compound/drug complexes having antimalarial activity (against Plasmodium). The aim is to save experimental resources and time by using a virtual screening for DDNPs. The raw data was obtained by the fusion of experimental data for nanoparticles with compound chemical assays from the ChEMBL database. The inputs for the eight Machine Learning classifiers were transformed features of drugs/compounds and nanoparticles as perturbations of molecular descriptors in specific experimental conditions (experiment-centered features). The resulting dataset contains 107 input features and 249,992 examples. The best classification model was provided by Random Forest, with 27 selected features of drugs/compounds and nanoparticles in all experimental conditions considered. The high performance of the model was demonstrated by the mean Area Under the Receiver Operating Characteristics (AUC) in a test subset with a value of 0.9921 ± 0.000244 (10-fold cross-validation). The results demonstrated the power of information fusion of the experimental-centered features of drugs/compounds and nanoparticles for the prediction of nanoparticle–compound antimalarial activity. The scripts and dataset for this project are available in the open GitHub repository.
- Published
- 2020
11. Fabrication of selective gas sensors using Fe3O4 nanoparticles decorated with CuO
- Author
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Ahmad I. Ayesh and Belal Salah
- Subjects
CuO ,H2S ,H2 ,Fe3O4 ,General Materials Science ,Decorated nanoparticles ,Gas sensor ,Condensed Matter Physics ,Metal-oxide - Abstract
Metal-oxide nanoparticles are regarded as favorable candidates for different device applications including gas sensors. Decoration of nanoparticles with smaller ones of different types enables taking advantage of the physical and chemical characteristics of both core and decorate nanoparticles. Fe3O4 nanoparticles decorated with CuO are produced in this work by a coprecipitation method and investigated for their application for H2S gas sensor devices. The average size of Fe3O4 nanoparticles is 33.33∓5.55nm while the average grain size of the CuO nanoparticles is 9.72∓1.39nm. Gas sensors are fabricated by depositing dispersed nanoparticles on substrates with pre-printed interdigitated electrodes. Impedance spectroscopy is utilized to investigate the electrical characteristics of fabricated devices, where their activation energy is evaluated to 0.386±0.076eV. The fabricated sensors are found to be selective to H2S and sensitive to low concentrations, as low as 1.0 ppm, with minimum response time of 1.0 min. The produced sensors indicate potential for field applications due to their various features that include simplified and practical fabrication procedure, low power needs, high sensitivity, reasonable response time, and magnetic properties of nanoparticles that facilitate their recycling. Qatar University
- Published
- 2022
12. Prediction of Antimalarial Drug-Decorated Nanoparticle Delivery Systems with Random Forest Models
- Author
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Iago Otero, Cristian R. Munteanu, Diana V. Urista, Viviana Quevedo-Tumailli, Marcos Gestal, Sonia Arrasate, Diego B. Carrué, and Humbert González-Díaz
- Subjects
0301 basic medicine ,Biology ,01 natural sciences ,General Biochemistry, Genetics and Molecular Biology ,Article ,Machine Learning ,03 medical and health sciences ,big data ,Molecular descriptor ,lcsh:QH301-705.5 ,Virtual screening ,Fusion ,General Immunology and Microbiology ,Receiver operating characteristic ,business.industry ,Experimental data ,Pattern recognition ,ChEMBL database ,chEMBL ,0104 chemical sciences ,Random forest ,010404 medicinal & biomolecular chemistry ,030104 developmental biology ,lcsh:Biology (General) ,Drug delivery ,drug delivery ,Perturbation Theory ,decorated nanoparticles ,antimalarial compounds ,Artificial intelligence ,General Agricultural and Biological Sciences ,business - Abstract
Drug-decorated nanoparticles (DDNPs) have important medical applications. The current work combined Perturbation Theory with Machine Learning and Information Fusion (PTMLIF). Thus, PTMLIF models were proposed to predict the probability of nanoparticle&ndash, compound/drug complexes having antimalarial activity (against Plasmodium). The aim is to save experimental resources and time by using a virtual screening for DDNPs. The raw data was obtained by the fusion of experimental data for nanoparticles with compound chemical assays from the ChEMBL database. The inputs for the eight Machine Learning classifiers were transformed features of drugs/compounds and nanoparticles as perturbations of molecular descriptors in specific experimental conditions (experiment-centered features). The resulting dataset contains 107 input features and 249,992 examples. The best classification model was provided by Random Forest, with 27 selected features of drugs/compounds and nanoparticles in all experimental conditions considered. The high performance of the model was demonstrated by the mean Area Under the Receiver Operating Characteristics (AUC) in a test subset with a value of 0.9921 ±, 0.000244 (10-fold cross-validation). The results demonstrated the power of information fusion of the experimental-centered features of drugs/compounds and nanoparticles for the prediction of nanoparticle&ndash, compound antimalarial activity. The scripts and dataset for this project are available in the open GitHub repository.
- Published
- 2020
13. Fabrication of selective gas sensors using Fe3O4 nanoparticles decorated with CuO.
- Author
-
Ayesh, Ahmad I. and Salah, Belal
- Subjects
- *
IRON oxide nanoparticles , *GAS detectors , *COPPER oxide , *MAGNETIC nanoparticles - Abstract
Metal-oxide nanoparticles are regarded as favorable candidates for different device applications including gas sensors. Decoration of nanoparticles with smaller ones of different types enables taking advantage of the physical and chemical characteristics of both core and decorate nanoparticles. Fe 3 O 4 nanoparticles decorated with CuO are produced in this work by a coprecipitation method and investigated for their application for H 2 S gas sensor devices. The average size of Fe 3 O 4 nanoparticles is 33.33 ∓ 5.55 n m while the average grain size of the CuO nanoparticles is 9.72 ∓ 1.39 n m. Gas sensors are fabricated by depositing dispersed nanoparticles on substrates with pre-printed interdigitated electrodes. Impedance spectroscopy is utilized to investigate the electrical characteristics of fabricated devices, where their activation energy is evaluated to 0.386 ± 0.076 e V. The fabricated sensors are found to be selective to H 2 S and sensitive to low concentrations, as low as 1.0 ppm, with minimum response time of 1.0 min. The produced sensors indicate potential for field applications due to their various features that include simplified and practical fabrication procedure, low power needs, high sensitivity, reasonable response time, and magnetic properties of nanoparticles that facilitate their recycling. • H 2 S gas sensors were produced based on nanoparticles of Fe 3 O 4 decorated with CuO. • The nanoparticles were synthesized by a coprecipitation method. • The sensors were sensitive at room temperature for H 2 S concentration of 1.0 ppm. • The minimum response times was 1.0 min. • The sensors were stable for multiple application cycles. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
14. Influence of Magnetic Nanoparticles on PISA Preparation of Poly(Methacrylic Acid)- b -Poly(Methylmethacrylate) Nano-Objects
- Author
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Ranil Wickramasinghe, Carla A.M. Portugal, Lakshmeesha Upadhyaya, Rodrigo Fernández-Pacheco, Mona Semsarilar, Chidubem Egbosimba, Xianghong Qian, Isabel M. Coelhoso, Damien Quemener, João G. Crespo, Institut Européen des membranes (IEM), Centre National de la Recherche Scientifique (CNRS)-Ecole Nationale Supérieure de Chimie de Montpellier (ENSCM)-Université Montpellier 2 - Sciences et Techniques (UM2)-Institut de Chimie du CNRS (INC)-Université de Montpellier (UM), University of Zaragoza - Universidad de Zaragoza [Zaragoza], Faculdade de Ciências e Tecnologia = School of Science & Technology (FCT NOVA), and Universidade Nova de Lisboa = NOVA University Lisbon (NOVA)
- Subjects
Microscopy, Electron, Scanning Transmission ,Poly(methacrylic acid) ,Materials science ,Polymers and Plastics ,Polymers ,Nanoparticle ,02 engineering and technology ,Chemistry Techniques, Synthetic ,010402 general chemistry ,01 natural sciences ,Polymerization ,chemistry.chemical_compound ,Coated Materials, Biocompatible ,Polymethacrylic Acids ,Scanning transmission electron microscopy ,Materials Chemistry ,Polymethyl Methacrylate ,[CHIM]Chemical Sciences ,Methyl methacrylate ,Magnetite Nanoparticles ,Spin coating ,Organic Chemistry ,RAFT controlled block copolymers ,Membranes, Artificial ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Membrane ,Magnetic Fields ,chemistry ,Methacrylic acid ,Chemical engineering ,magneto-responsive membranes ,Magnetic nanoparticles ,Nanoparticles ,decorated nanoparticles ,0210 nano-technology ,Porosity ,polymerization induced self-assembly - Abstract
International audience; This article presents the synthesis of poly(methacrylic acid)-b-poly(methyl methacrylate) diblock copolymer via polymerization-induced self-assembly in the presence of iron-oxide nanoparticles. Detailed phase diagrams with and without inorganic nanoparticles were constructed. Scanning transmission electron microscopy and energy dispersive X-ray photometry studies confirme the decoration of the polymeric nanoparticles with the iron-oxide nanoparticles. These hybrid nanoparticles were used to prepare porous thin film membranes by spin coating. Finally, the magneto-responsive properties of the membranes were assessed using water filtration tests in the presence and absence of a magnetic field.
- Published
- 2019
15. Prediction of Anti-Glioblastoma Drug-Decorated Nanoparticle Delivery Systems Using Molecular Descriptors and Machine Learning.
- Author
-
Munteanu, Cristian R., Gutiérrez-Asorey, Pablo, Blanes-Rodríguez, Manuel, Hidalgo-Delgado, Ismael, Blanco Liverio, María de Jesús, Castiñeiras Galdo, Brais, Porto-Pazos, Ana B., Gestal, Marcos, Arrasate, Sonia, and González-Díaz, Humbert
- Subjects
- *
MACHINE learning , *RECEIVER operating characteristic curves , *PERTURBATION theory , *MACHINE theory , *DECISION trees , *FEATURE selection - Abstract
The theoretical prediction of drug-decorated nanoparticles (DDNPs) has become a very important task in medical applications. For the current paper, Perturbation Theory Machine Learning (PTML) models were built to predict the probability of different pairs of drugs and nanoparticles creating DDNP complexes with anti-glioblastoma activity. PTML models use the perturbations of molecular descriptors of drugs and nanoparticles as inputs in experimental conditions. The raw dataset was obtained by mixing the nanoparticle experimental data with drug assays from the ChEMBL database. Ten types of machine learning methods have been tested. Only 41 features have been selected for 855,129 drug-nanoparticle complexes. The best model was obtained with the Bagging classifier, an ensemble meta-estimator based on 20 decision trees, with an area under the receiver operating characteristic curve (AUROC) of 0.96, and an accuracy of 87% (test subset). This model could be useful for the virtual screening of nanoparticle-drug complexes in glioblastoma. All the calculations can be reproduced with the datasets and python scripts, which are freely available as a GitHub repository from authors. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
16. Prediction of Antimalarial Drug-Decorated Nanoparticle Delivery Systems with Random Forest Models.
- Author
-
Urista DV, Carrué DB, Otero I, Arrasate S, Quevedo-Tumailli VF, Gestal M, González-Díaz H, and Munteanu CR
- Abstract
Drug-decorated nanoparticles (DDNPs) have important medical applications. The current work combined Perturbation Theory with Machine Learning and Information Fusion (PTMLIF). Thus, PTMLIF models were proposed to predict the probability of nanoparticle-compound/drug complexes having antimalarial activity (against Plasmodium). The aim is to save experimental resources and time by using a virtual screening for DDNPs. The raw data was obtained by the fusion of experimental data for nanoparticles with compound chemical assays from the ChEMBL database. The inputs for the eight Machine Learning classifiers were transformed features of drugs/compounds and nanoparticles as perturbations of molecular descriptors in specific experimental conditions (experiment-centered features). The resulting dataset contains 107 input features and 249,992 examples. The best classification model was provided by Random Forest, with 27 selected features of drugs/compounds and nanoparticles in all experimental conditions considered. The high performance of the model was demonstrated by the mean Area Under the Receiver Operating Characteristics (AUC) in a test subset with a value of 0.9921 ± 0.000244 (10-fold cross-validation). The results demonstrated the power of information fusion of the experimental-centered features of drugs/compounds and nanoparticles for the prediction of nanoparticle-compound antimalarial activity. The scripts and dataset for this project are available in the open GitHub repository.
- Published
- 2020
- Full Text
- View/download PDF
17. Influence of Magnetic Nanoparticles on PISA Preparation of Poly(Methacrylic Acid)‐b‐Poly(Methylmethacrylate) Nano‐Objects.
- Author
-
Upadhyaya, Lakshmeesha, Egbosimba, Chidubem, Qian, Xianghong, Wickramasinghe, Ranil, Fernández‐Pacheco, Rodrigo, Coelhoso, Isabel M., Portugal, Carla A. M., Crespo, João G., Quemener, Damien, and Semsarilar, Mona
- Subjects
- *
MAGNETIC nanoparticles , *DIBLOCK copolymers , *TRANSMISSION electron microscopy , *PHOTOMETRY , *PHASE diagrams - Abstract
This article presents the synthesis of poly(methacrylic acid)‐b‐poly(methyl methacrylate) diblock copolymer via polymerization‐induced self‐assembly in the presence of iron‐oxide nanoparticles. Detailed phase diagrams with and without inorganic nanoparticles were constructed. Scanning transmission electron microscopy and energy dispersive X‐ray photometry studies confirme the decoration of the polymeric nanoparticles with the iron‐oxide nanoparticles. These hybrid nanoparticles were used to prepare porous thin film membranes by spin coating. Finally, the magneto‐responsive properties of the membranes were assessed using water filtration tests in the presence and absence of a magnetic field. Iron‐oxide‐decorated PMAA‐b‐PMMA nanoparticles are prepared via polymerization‐induced self‐assembly and the influence of presence of magnetic iron‐oxide nanoparticles on the phase diagram is investigated. Thin‐film membranes made from these decorated nanoparticles show magnetic character. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
18. Magnetic resonance imaging of folic acid-coated magnetite nanoparticles reflects tissue biodistribution of long-acting antiretroviral therapy
- Author
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Xin Ming Liu, Tianyuzi Li, Tatiana K. Bronich, JoEllyn M McMillan, Michael D. Boska, Howard E. Gendelman, Benson J Edagwa, Gang Zhang, and Pavan Puligujja
- Subjects
Male ,theranostics ,Pharmaceutical Science ,02 engineering and technology ,Mice ,Drug Delivery Systems ,International Journal of Nanomedicine ,Drug Discovery ,Tissue Distribution ,Molecular Targeted Therapy ,Magnetite Nanoparticles ,Mononuclear Phagocyte System ,Original Research ,media_common ,Mice, Inbred BALB C ,0303 health sciences ,Alendronate ,Nanoart ,Dextrans ,General Medicine ,021001 nanoscience & nanotechnology ,Magnetic Resonance Imaging ,3. Good health ,Nanomedicine ,Anti-Retroviral Agents ,Drug delivery ,Systemic administration ,0210 nano-technology ,Drug ,Biodistribution ,magnetite ,Materials science ,media_common.quotation_subject ,Atazanavir Sulfate ,Biophysics ,Bioengineering ,Nanotechnology ,Biomaterials ,folic acid ,03 medical and health sciences ,Pharmacokinetics ,Animals ,030304 developmental biology ,Macrophages ,Organic Chemistry ,Reproducibility of Results ,Pharmacodynamics ,decorated nanoparticles ,Biomedical engineering - Abstract
Regimen adherence, systemic toxicities, and limited drug penetrance to viral reservoirs are obstacles limiting the effectiveness of antiretroviral therapy (ART). Our laboratory’s development of the monocyte-macrophage-targeted long-acting nanoformulated ART (nanoART) carriage provides a novel opportunity to simplify drug-dosing regimens. Progress has nonetheless been slowed by cumbersome, but required, pharmacokinetic (PK), pharmacodynamics, and biodistribution testing. To this end, we developed a small magnetite ART (SMART) nanoparticle platform to assess antiretroviral drug tissue biodistribution and PK using magnetic resonance imaging (MRI) scans. Herein, we have taken this technique a significant step further by determining nanoART PK with folic acid (FA) decorated magnetite (ultrasmall superparamagnetic iron oxide [USPIO]) particles and by using SMART particles. FA nanoparticles enhanced the entry and particle retention to the reticuloendothelial system over nondecorated polymers after systemic administration into mice. These data were seen by MRI testing and validated by comparison with SMART particles and direct evaluation of tissue drug levels after nanoART. The development of alendronate (ALN)-coated magnetite thus serves as a rapid initial screen for the ability of targeting ligands to enhance nanoparticle-antiretroviral drug biodistribution, underscoring the value of decorated magnetite particles as a theranostic tool for improved drug delivery., Video abstract
- Published
- 2015
19. Magnetic resonance imaging of folic acid-coated magnetite nanoparticles reflects tissue biodistribution of long-acting antiretroviral therapy.
- Author
-
Li T, Gendelman HE, Zhang G, Puligujja P, McMillan JM, Bronich TK, Edagwa B, Liu XM, and Boska MD
- Subjects
- Alendronate chemistry, Animals, Atazanavir Sulfate pharmacokinetics, Dextrans, Drug Delivery Systems methods, Folic Acid chemistry, Folic Acid pharmacokinetics, Macrophages drug effects, Male, Mice, Mice, Inbred BALB C, Molecular Targeted Therapy methods, Mononuclear Phagocyte System drug effects, Nanomedicine methods, Reproducibility of Results, Tissue Distribution, Anti-Retroviral Agents pharmacokinetics, Magnetic Resonance Imaging methods, Magnetite Nanoparticles chemistry
- Abstract
Regimen adherence, systemic toxicities, and limited drug penetrance to viral reservoirs are obstacles limiting the effectiveness of antiretroviral therapy (ART). Our laboratory's development of the monocyte-macrophage-targeted long-acting nanoformulated ART (nanoART) carriage provides a novel opportunity to simplify drug-dosing regimens. Progress has nonetheless been slowed by cumbersome, but required, pharmacokinetic (PK), pharmacodynamics, and biodistribution testing. To this end, we developed a small magnetite ART (SMART) nanoparticle platform to assess antiretroviral drug tissue biodistribution and PK using magnetic resonance imaging (MRI) scans. Herein, we have taken this technique a significant step further by determining nanoART PK with folic acid (FA) decorated magnetite (ultrasmall superparamagnetic iron oxide [USPIO]) particles and by using SMART particles. FA nanoparticles enhanced the entry and particle retention to the reticuloendothelial system over nondecorated polymers after systemic administration into mice. These data were seen by MRI testing and validated by comparison with SMART particles and direct evaluation of tissue drug levels after nanoART. The development of alendronate (ALN)-coated magnetite thus serves as a rapid initial screen for the ability of targeting ligands to enhance nanoparticle-antiretroviral drug biodistribution, underscoring the value of decorated magnetite particles as a theranostic tool for improved drug delivery.
- Published
- 2015
- Full Text
- View/download PDF
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