65 results on '"Zhuoqi Liu"'
Search Results
2. Identification and validation of lactate metabolism-related genes in oxygen-induced retinopathy
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Jiawei Xu, Yunpeng Zhang, Rong Gan, Zhuoqi Liu, and Yan Deng
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Medicine ,Science - Abstract
Abstract Retinopathy of Prematurity (ROP) is a multifactorial disease characterized by abnormal retinal vascular growth in premature infants, which is one of the leading causes of childhood blindness. Lactic acid metabolism may play an imperative role in the development of ROP, but there are still few relevant studies. Our team use a dataset GSE158799 contained 284 genes in 3 P17_OIR mice and 3 P30_OIR mice to identify 41 potentially differentially expressed lactate metabolism-related genes (LMRGs) related to ROP. Then through bioinformatics analysis, we strive to reveal the interaction, the enriched pathways and the immune cell infiltration among these LMRGs, and predict their functions and internal mechanisms. These DEGs may regulate lactate metabolism, leading to the changes of metabolism and immunity, thereby inducing the development of ROP. Our results will expand our understanding of the intrinsic mechanism of ROP and may be helpful for the directions for treatment of ROP in the future.
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- 2023
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3. Transcriptome Analysis of Female and Male Henosepilachna vigintioctopunctata (Coleoptera: Coccinellidae) Identifies Sex-related Genes
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Wei Guo, Zhuoqi Liu, Jiaqi Yu, Jing Lü, Xiaoguo Jiao, Lan Kong, Chunxiao Yang, and Huipeng Pan
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Henosepilachna vigintioctopunctata ,sex ,RNA-seq ,transcriptome annotation ,differential expression ,Plant culture ,SB1-1110 - Abstract
Henosepilachna vigintioctopunctata is an emerging horticultural pest of Solanaceae plants in Asia. Here, we employed transcriptome sequencing of three female and three male H. vigintioctopunctata libraries to identify sex-related genes. We recorded 281 599 294 bp of clean reads, and de novo assembly generated 85 206 unigenes, with N50 of 1 311 bp and average length of 763 bp. We found 5 002 genes highly expressed in males and 2 179 genes highly expressed in females. Expression profiles of six unigenes specific to females, six unigenes specific to males, and ten unigenes common to both sexes were verified using semi-quantitive RT-PCR; results showed expression levels of these 22 unigenes were relatively consistent with the transcriptome analysis. Using all unigenes as references, we identified 6 657 putative simple sequence repeats. The transcriptome sequences and gene expression profiles of female and male H. vigintioctopunctata help explore genetic mechanisms of sexual dimorphism.
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- 2021
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4. Toxicity of fluralaner against vegetable pests and its sublethal impact on a biocontrol predatory ladybeetle
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Zhuoqi Liu, Muhammad Musa Khan, Anugerah Fajar, Shimin Chen, Mujuan Guo, Yueyin Chen, Chunxiao Yang, Jianhui Wu, Baoli Qiu, Xuguo Zhou, and Huipeng Pan
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Fluralaner ,Sublethal effect ,Henosepilachna vigintioctopunctata ,Phyllotreta striolata ,Megalurothrips usitatus ,Propylaea japonica ,Environmental pollution ,TD172-193.5 ,Environmental sciences ,GE1-350 - Abstract
Fluralaner, a systemic pesticide, was originally registered with the US Food and Drug Administration in 2014 under the trade name Bravecto for flea treatment for pets. As a GABA antagonist, the footprint of fluralaner has expended beyond medical and veterinary pests in recent years. In this study, we examined the acute toxicity of fluralaner against three pests of Henosepilachna vigintioctopunctata, Megalurothrips usitatus, and Phyllotreta striolata in the Solanaceae, Fabaceae, and Cruciferae families, respectively, and the sublethal impact of fluralaner on Propylaea japonica, a widely distributed predatory ladybeetle. Based on LC50, fluralaner was effective against H. vigintioctopunctata (0.098 mg a.i. L−1 for the second instar larvae), M. usitatus (0.134 mg a.i. L−1 for adult females), and P. striolata (0.595 mg a.i. L−1 for adults). For P. japonica, however, fluralaner was substantially less effective (1.177 mg a.i. L−1 for the third instar larvae). Furthermore, the LC10 and LC30 of P. japonica were also consistently higher than the LC50 of the three pests. In addition, we did not observe any significant impacts of fluralaner at LC10 and LC30 on the life history traits, including body weight, developmental time, pre-oviposition period, and fecundity of P. japonica. Based on our results from acute toxicities and sublethal impacts, fluralaner is effective against vegetable pests, while potentially friendly to P. japonica when employed as a biological control agent.
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- 2021
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5. Characteristics of a Fluidic Oscillator with Low Frequency and Low Speed and Its Application to Stall Margin Improvement
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Zhuoqi Liu, Tianyu Pan, Shiqi Wang, and Zhaoqi Yan
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fluidic oscillator ,pulsating jets ,axial compressor ,unsteady stall margin improvement ,Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Production of electric energy or power. Powerplants. Central stations ,TK1001-1841 - Abstract
Active flow control methods are commonly used in expanding the operating range of compressors. Indeed, unsteady active control methods are the main focus of researchers due to their effectiveness. For constructing an unsteady active control system, reliable actuators are significant. To compare with conventional actuators such as synthetic jet actuators and rotating valves, fluidic oscillators have structurally robust characteristics and can generate self-excited and self-sustained oscillating jets, which leads to its higher applicability in compressors under severe working conditions. Thus, to explore the feasibility of unsteady active control systems by the usage of fluidic oscillators, a low-frequency and low-speed oscillator is first designed and experimentally studied for improving the stability of a low-speed axial flow compressor. During the experiments, a special casing is designed to install 15 uniformly distributed oscillators in the tip region of compressor. Based on the unsteady micro injections of the rotor tip with rotor rotation frequency, the results indicate that the frequency/period of oscillators are flexible, in which the values are decoupled with the variation of inlet pressure. When the inlet-to-outlet pressure ratio of the oscillator is in the range of 1.1~2.0, the maximum velocity ranges from 30 m/s to 80 m/s. Moreover, the mass flow rate of the single oscillator only varies from 0.017‰ to 0.059‰ from the designed compressor mass flow rate. For the improvement of the compressor stall margin, the value is 3.45% when the total mass flow of oscillators is 0.08% of the designed compressor mass flow.
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- 2022
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6. WDR5-H3K4me3 epigenetic axis regulates OPN expression to compensate PD-L1 function to promote pancreatic cancer immune escape
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Jennifer L Waller, Chunwan Lu, Kebin Liu, John D Klement, Dafeng Yang, Zhuoqi Liu, Alyssa D Merting, Dakota Poschel, Thomas Albers, and Huidong Shi
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background Despite PD-L1 (Programmed death receptor ligand-1) expression on tumor cells and cytotoxic T lymphocytes tumor infiltration in the tumor microenvironment, human pancreatic cancer stands out as one of the human cancers that does not respond to immune checkpoint inhibitor (ICI) immunotherapy. Epigenome dysregulation has emerged as a major mechanism in T cell exhaustion and non-response to ICI immunotherapy, we, therefore, aimed at testing the hypothesis that an epigenetic mechanism compensates PD-L1 function to render pancreatic cancer non-response to ICI immunotherapy.Methods Two orthotopic pancreatic tumor mouse models were used for chromatin immunoprecipitation-Seq and RNA-Seq to identify genome-wide dysregulation of H3K4me3 and gene expression. Human pancreatic tumor and serum were analyzed for osteopontin (OPN) protein level and for correlation with patient prognosis. OPN and PD-L1 cellular location were determined in the tumors using flow cytometry. The function of WDR5-H3K4me3 axis in OPN expression were determined by Western blotting. The function of H3K4me3-OPN axis in pancreatic cancer immune escape and response to ICI immunotherapy was determined in an orthotopic pancreatic tumor mouse model.Results Mouse pancreatic tumors have a genome-wide increase in H3K4me3 deposition as compared with normal pancreas. OPN and its receptor CD44 were identified being upregulated in pancreatic tumors by their promoter H3K4me3 deposition. OPN protein is increased in both tumor cells and tumor-infiltrating immune cells in human pancreatic carcinoma and is inversely correlated with pancreatic cancer patient survival. OPN is primarily expressed in tumor cells and monocytic myeloid-derived suppressor cells (M-MDSCs), whereas PD-L1 is expressed in tumor cells, M-MDSCs, polymorphonuclear MDSCs and tumor-associated macrophages. WDR5 is essential for H3K4me3-specific histone methyltransferase activity that regulates OPN expression in tumor cells and MDSCs. Inhibition of WDR5 significantly decreased OPN protein level. Inhibition of WDR5 or knocking out of OPN suppressed orthotopic mouse pancreatic tumor growth. Inhibition of WDR5 also significantly increased efficacy of anti-PD-1 immunotherapy in suppression of mouse pancreatic tumor growth in vivo.Conclusions OPN compensates PD-L1 function to promote pancreatic cancer immune escape. Pharmacological inhibition of the WDR5-H3K4me3 epigenetic axis is effective in suppressing pancreatic tumor immune escape and in improving efficacy of anti-PD-1 immunotherapy in pancreatic cancer.
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- 2021
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7. Factors involved in cancer metastasis: a better understanding to 'seed and soil' hypothesis
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Qiang Liu, Hongfei Zhang, Xiaoli Jiang, Caiyun Qian, Zhuoqi Liu, and Daya Luo
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Cancer metastasis ,Seed ,Soil ,Metastasis research ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Metastasis has intrigued researchers for more than 100 years. Despite the development of technologies and therapeutic strategies, metastasis is still the major cause of cancer-related death until today. The famous “seed and soil” hypothesis is widely cited and accepted, and it still provides significant instructions in cancer research until today. To our knowledge, there are few reviews that comprehensively and correlatively focus on both the seed and soil factors involved in cancer metastasis; moreover, despite the fact that increasingly underlying mechanisms and concepts have been defined recently, previous perspectives are appealing but may be limited. Hence, we reviewed factors involved in cancer metastasis, including both seed and soil factors. By integrating new concepts with the classic hypothesis, we aim to provide a comprehensive understanding of the “seed and soil” hypothesis and to conceptualize the framework for understanding factors involved in cancer metastasis. Based on a dynamic overview of this field, we also discuss potential implications for future research and clinical therapeutic strategies.
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- 2017
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8. Screening of immunosuppressive factors for biomarkers of breast cancer malignancy phenotypes and subtype-specific targeted therapy
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Ping Wang, Jiaxuan Liu, Yunlei Song, Qiang Liu, Chao Wang, Caiyun Qian, Shuhua Zhang, Weifeng Zhu, Xiaohong Yang, Fusheng Wan, Zhuoqi Liu, and Daya Luo
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Breast cancer ,Immunosuppressive factor ,Biomarker ,Therapeutic target ,Online databases ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
We aimed to screen and validate immunosuppressive factors in luminal- and basal-like breast cancer cell lines and tissue samples associated with malignant phenotypes. The mRNA microarray datasets, GSE40057 and GSE1561, were downloaded and remodeled, and differentially expressed genes were identified. Weighted gene co-expression network analysis (WGCNA) and gene ontology (GO) and KEGG pathway enrichment analysis were performed to explore the immune-related events related to the basal-like breast cancer. The online resources, GOBO, Kaplan–Meier Plotter and UALCAN, were employed to screen for immunosuppressive factors associated with breast cancer malignant phenotypes. Immunohistochemistry was used to evaluate VEGFA and MIF levels in breast tumors and normal breast tissues; qPCRs and western blots were used to validate the expression of clinical immuno-oncology (IO) therapeutic targets CD274 (PD-L1) and IL8 in cell lines. The results showed that various immune-related events contribute to basal-like breast cancer. First, TGFβ1 and IL8 had higher average expression levels in more malignant cell lines; second, MIF and VEGFA had higher average expression levels in more malignant breast cancer tissues, and the high expression levels were associated with poor survival rate. Third, IO targets CD274 and IL8 which were confirmed to be more suitable for the treatment of basal-like breast cancer. In view of the above, during the formation and development of breast cancer, immune-related genes are always activated, and immunosuppressive factors, IL8, TGFβ1, MIF, and VEGFA are up-regulated. Such molecules could be used as biomarkers for breast cancer prognosis. However, because individual immune-related factors can play several biological roles, the mechanistic relationship between immunosuppressive factors and breast cancer malignant phenotypes and the feasibility of their application as drug targets require further investigation.
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- 2019
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9. Development of an Integrated and Project-Based Laboratory Course in Upper-Level Biochemistry and Molecular Biology
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Yange Liu, Shuo Tu, Xiaojuan Hu, Xiangyang Xiong, Zezheng Pan, Zhuoqi Liu, Weifeng Zhu, Daya Luo, Xiangpei Cui, Chunhong Huang, and Caifeng Xie
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An integrated and projected-based laboratory course was described, integrating interconnected knowledge points and biochemistry and molecular biology techniques on a research project-based system. The program, which served as an essential extension of theoretical courses to practice, was conducted with a sophomore of basic medical science who had completed the course in medical biochemistry and molecular biology. This course engaged students in learning "genetic manipulation" and "recombinant DNA technology" to understand the target gene's role in disease mechanics, thus altering evaluation and treatment for clinical disease. Students could master applied and advanced techniques, such as cell culture, transfection, inducing exogenous fusion protein expression, purifying protein and its concentration assay, quantitative polymerase chain reaction, and western bot analysis. This laboratory exercise links laboratory practices with the methods of current basic research. Students need to complete the experimental design report and laboratory report, which could be advantageous for improving their ability to write lab summaries and scientific papers in the future. The reliability and validity analyses were conducted on the questionnaire, and we examined students' satisfaction with the course and their gains from the course. The student feedback was generally positive, indicating that the exercise helped consolidate theoretical knowledge, increase scientific research enthusiasm, and provide a powerful tool to be a better person and make informed decisions.
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- 2024
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10. Identification of potential crucial genes and pathways associated with vein graft restenosis based on gene expression analysis in experimental rabbits
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Qiang Liu, Xiujie Yin, Mingzhu Li, Li Wan, Liqiao Liu, Xiang Zhong, Zhuoqi Liu, and Qun Wang
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Occlusive artery disease ,Vein graft restenosis ,Microarray data ,Differentially expressed gene ,Bioinformatics analysis ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Occlusive artery disease (CAD) is the leading cause of death worldwide. Bypass graft surgery remains the most prevalently performed treatment for occlusive arterial disease, and veins are the most frequently used conduits for surgical revascularization. However, the clinical efficacy of bypass graft surgery is highly affected by the long-term potency rates of vein grafts, and no optimal treatments are available for the prevention of vein graft restenosis (VGR) at present. Hence, there is an urgent need to improve our understanding of the molecular mechanisms involved in mediating VGR. The past decade has seen the rapid development of genomic technologies, such as genome sequencing and microarray technologies, which will provide novel insights into potential molecular mechanisms involved in the VGR program. Ironically, high throughput data associated with VGR are extremely scarce. The main goal of the current study was to explore potential crucial genes and pathways associated with VGR and to provide valid biological information for further investigation of VGR. A comprehensive bioinformatics analysis was performed using high throughput gene expression data. Differentially expressed genes (DEGs) were identified using the R and Bioconductor packages. After functional enrichment analysis of the DEGs, protein–protein interaction (PPI) network and sub-PPI network analyses were performed. Finally, nine potential hub genes and fourteen pathways were identified. These hub genes may interact with each other and regulate the VGR program by modulating the cell cycle pathway. Future studies focusing on revealing the specific cellular and molecular mechanisms of these key genes and pathways involved in regulating the VGR program may provide novel therapeutic targets for VGR inhibition.
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- 2018
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11. Roles of the MST1-JNK signaling pathway in apoptosis of colorectal cancer cells induced by Taurine
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Zhuoqi Liu, Yanqin Xia, Xiali Zhang, Liqiao Liu, Shuo Tu, Weifeng Zhu, Lehan Yu, Huifang Wan, Bo Yu, and Fusheng Wan
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Taurine ,mammalian male sterile line 20-like kinase 1 ,c-Jun amino terminal kinase ,colorectal cancer ,apoptosis ,Medicine - Abstract
The aim of this study was to observe the impact of the mammalian sterile 20-like kinase 1-c-Jun N-terminal kinase (MST1-JNK) signaling pathway on apoptosis in colorectal cancer (CRC) cells induced by Taurine (Tau). Caco-2 and SW620 cells transfected with p-enhanced green fluorescent protein (EGFP)-MST1 or short interfering RNA (siRNA)-MST1 were treated with Tau for 48 h. Apoptosis was detected by flow cytometry, and the levels of MST1 and JNK were detected by western blotting. Compared with the control group, 80 mM Tau could significantly induce apoptosis of CRC cells, and the apoptotic rate increased with increasing Tau concentration (P
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- 2018
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12. Exosomal microRNA remodels the tumor microenvironment
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Xiaoli Jiang, Song Hu, Qiang Liu, Caiyun Qian, Zhuoqi Liu, and Daya Luo
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Endogenous ,Exogenous ,Exosome ,microRNA ,Tumor microenvironment ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Tumor occurrence, progression and metastasis depend on the crosstalk between tumor cells and stromal cells and on extrinsic factors outside the tumor microenvironment. Exosomal microRNA (miRNA) not only is involved in communications within the tumor microenvironment but also mediates communications between the extrinsic environment and tumor microenvironment. However, most reviews have been limited to the role of endogenous exosomal miRNA in remodeling the tumor microenvironment. Hence, we herein review the role of endogenous exosomal miRNA in mediating intercellular crosstalk within the tumor microenvironment, inducing the formation of the premetastatic niche. To place our vision outside the microenvironment, we also summarize for the first time the most recent studies regarding how exogenous miRNA derived from milk, plants and microbes influences the tumor microenvironment. Furthermore, to improve the value of exosomal miRNA in cancer research and clinical applications, we also provide some novel ideas for future research based on the comprehensive role of exosomal miRNA in remodeling the tumor microenvironment.
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- 2017
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13. Feeding Delivery of dsHvSnf7 Is a Promising Method for Management of the Pest Henosepilachna vigintioctopunctata (Coleoptera: Coccinellidae)
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Jing Lü, Zhuoqi Liu, Wei Guo, Mujuan Guo, Shimin Chen, Huali Li, Chunxiao Yang, Youjun Zhang, and Huipeng Pan
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henosepilachna vigintioctopunctata ,hvsnf7 ,feeding rnai ,mortality ,ultrastructural change ,Science - Abstract
RNA interference (RNAi) techniques have emerged as powerful tools in the development of novel management strategies for the control of insect pests, such as Henosepilachna vigintioctopunctata, which is a major solanaceous pest in Asia. Our results showed that levels of HvSnf7 expression were greater in larval midguts than in other tissues. Silencing of HvSnf7 led to greater H. vigintioctopunctata mortality rates and appeared to be time- and partially dose-dependent. Bacterially expressed dsHvSnf7 that was applied to detached plant leaves caused 98, 88, and 60% mortality in 1st and 3rd instars, and adults after 10, 12, and 14 d, respectively; when applied to living plants, bacterially expressed dsHvSnf7 led to mortality in 1st and 3rd instars, with no effect on adults. Bacterially expressed dsHvSnf7 led to improved plant protection against H. vigintioctopunctata. Ultrastructural changes caused by HvSnf7-RNAi in larval midguts showed extensive loss of cellular contents that indicate loss of membrane integrity. This study indicate that HvSnf7 potentially can be used as RNAi target gene for controlling of H. vigintioctopunctata.
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- 2019
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14. Numerical scheme for delay-type stochastic McKean-Vlasov equations driven by fractional Brownian motion.
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Shuaibin Gao, Qian Guo 0002, Zhuoqi Liu, and Chenggui Yuan
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- 2024
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15. The truncated EM scheme for multiple-delay SDEs with irregular coefficients and application to stochastic volatility model.
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Zhuoqi Liu, Zhaohang Wang, Siying Sun, and Shuaibin Gao
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- 2024
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16. The randomized Milstein scheme for stochastic Volterra integral equations with weakly singular kernels.
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Zhaohang Wang, Zhuoqi Liu, Shuaibin Gao, and Junhao Hu
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- 2023
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17. Stability of the numerical scheme for stochastic McKean-Vlasov equations.
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Zhuoqi Liu, Shuaibin Gao, Chenggui Yuan, and Qian Guo 0002
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- 2023
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18. The rate of change in clinical indicators can predict the progression of hepatitis B virus-related acute-on-chronic preliver failure.
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Jun Lu, Zhihui Tu, Zhen Zhang, Shumei Wang, Zhuoqi Liu, Xiaohui Lu, Jun Zhang, and Daya Luo
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- 2024
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19. Mean-square convergence and stability of the backward Euler method for stochastic differential delay equations with highly nonlinear growing coefficients.
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Zhuoqi Liu, Qian Guo, and Shuaibin Gao
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- 2022
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20. Stationary distribution of the Milstein scheme for stochastic differential delay equations with first-order convergence.
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Shuaibin Gao, Xiaotong Li, and Zhuoqi Liu
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- 2023
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21. Oral delivery of dsHvUSP is a promising method for Henosepilachna vigintioctopunctata control with no adverse effect on the non-target insect Propylea japonica
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Zhuoqi Liu, Yajie Wang, Satyabrata Nanda, Zhaoyang Li, Yingqiu Li, Mujuan Guo, Shimin Chen, Chunxiao Yang, and Huipeng Pan
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Insect Science - Published
- 2023
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22. The first comprehensive study of a giant nebula around a radio-quiet quasar in the z < 1 Universe.
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(Will), Zhuoqi Liu, Johnson, Sean D, Li, Jennifer I-Hsiu, Rudie, Gwen C, Schaye, Joop, Chen, Hsiao-Wen, Brinchmann, Jarle, Cantalupo, Sebastiano, Chen, Mandy C, Kollatschny, Wolfram, Maseda, Michael V, Mishra, Nishant, and Muzahid, Sowgat
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QUASARS , *INTEGRAL field spectroscopy , *NEBULAE , *INTERSTELLAR medium , *ELECTRON density ,UNIVERSE - Abstract
We present the first comprehensive study of a giant, ≈70 kpc-scale nebula around a radio-quiet quasar at z < 1. The analysis is based on deep integral field spectroscopy with Multi-Unit Spectroscopic Explorer of the field of HE 0238−1904, a luminous quasar at z = 0.6282. The nebula emits strongly in [O ii ], |$\rm H \beta$| , and [O iii ], and the quasar resides in an unusually overdense environment for a radio-quiet system. The environment likely consists of two groups which may be merging, and in total have an estimated dynamical mass of M dyn ≈ 4 × 1013 to 1014 M⊙. The nebula exhibits largely quiescent kinematics and irregular morphology. The nebula may arise primarily through interaction-related stripping of circumgalactic and interstellar medium (CGM/ISM) of group members, with some potential contributions from quasar outflows. The simultaneous presence of the giant nebula and a radio-quiet quasar in a rich environment suggests a correlation between such circum-quasar nebulae and environmental effects. This possibility can be tested with larger samples. The upper limits on the electron number density implied by the [O ii ] doublet ratio range from |$\log (n_{\rm e, [O\,{\small II}]} /\mathrm{cm}^{-3})<1.2$| to 2.8. However, assuming a constant quasar luminosity and negligible projection effects, the densities implied from the measured line ratios between different ions (e.g. [O ii ], [O iii ], and [Ne v ]) and photoionization simulations are often 10−400 times larger. This large discrepancy can be explained by quasar variability on a time-scale of ≈104−105 yr. [ABSTRACT FROM AUTHOR]
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- 2024
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23. Data from Autocrine IL6-Mediated Activation of the STAT3–DNMT Axis Silences the TNFα–RIP1 Necroptosis Pathway to Sustain Survival and Accumulation of Myeloid-Derived Suppressor Cells
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Kebin Liu, Asha Nayak-Kapoor, Thomas J. Hartney, Huidong Shi, Zhuoqi Liu, Qimei Han, Dafeng Yang, Mohammed L. Ibrahim, Priscilla S. Redd, John D. Klement, Amy V. Paschall, Daniela Payne, Chunwan Lu, and Alyssa D. Smith
- Abstract
Although accumulation of myeloid-derived suppressor cells (MDSC) is a hallmark of cancer, the underlying mechanism of this accumulation within the tumor microenvironment remains incompletely understood. We report here that TNFα–RIP1–mediated necroptosis regulates accumulation of MDSCs. In tumor-bearing mice, pharmacologic inhibition of DNMT with the DNA methyltransferease inhibitor decitabine (DAC) decreased MDSC accumulation and increased activation of antigen-specific cytotoxic T lymphocytes. DAC-induced decreases in MDSC accumulation correlated with increased expression of the myeloid cell lineage-specific transcription factor IRF8 in MDSCs. However, DAC also suppressed MDSC-like cell accumulation in IRF8-deficient mice, indicating that DNA methylation may regulate MDSC survival through an IRF8-independent mechanism. Instead, DAC decreased MDSC accumulation by increasing cell death via disrupting DNA methylation of RIP1-dependent targets of necroptosis. Genome-wide DNA bisulfite sequencing revealed that the Tnf promoter was hypermethylated in tumor-induced MDSCs in vivo. DAC treatment dramatically increased TNFα levels in MDSC in vitro, and neutralizing TNFα significantly increased MDSC accumulation and tumor growth in tumor-bearing mice in vivo. Recombinant TNFα induced MDSC cell death in a dose- and RIP1-dependent manner. IL6 was abundantly expressed in MDSCs in tumor-bearing mice and patients with human colorectal cancer. In vitro, IL6 treatment of MDSC-like cells activated STAT3, increased expression of DNMT1 and DNMT3b, and enhanced survival. Overall, our findings reveal that MDSCs establish a STAT3–DNMT epigenetic axis, regulated by autocrine IL6, to silence TNFα expression. This results in decreased TNFα-induced and RIP1-dependent necroptosis to sustain survival and accumulation.Significance:These findings demonstrate that targeting IL6 expression or function represent potentially effective approaches to suppress MDSC survival and accumulation in the tumor microenvironment.
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- 2023
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24. Supplementary Data from Autocrine IL6-Mediated Activation of the STAT3–DNMT Axis Silences the TNFα–RIP1 Necroptosis Pathway to Sustain Survival and Accumulation of Myeloid-Derived Suppressor Cells
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Kebin Liu, Asha Nayak-Kapoor, Thomas J. Hartney, Huidong Shi, Zhuoqi Liu, Qimei Han, Dafeng Yang, Mohammed L. Ibrahim, Priscilla S. Redd, John D. Klement, Amy V. Paschall, Daniela Payne, Chunwan Lu, and Alyssa D. Smith
- Abstract
Supplemental Figures 1-7. Figure S1. IRF8 expression profiles in subsets of immune cells in spleens of tumor-bearing mice. Figure S2. IRF8 expression profiles in subsets of immune cells in peripheral blood of tumor-bearing mice. Figure S3. DNA methylation and MDSC accumulation in tumor-bearing mice. Figure S4. Inhibition of DNA methylation activates antigen-specific CTLs in tumor-bearing mice. Figure S5. Neutralization of TNFα increases tumor growth and MDSC accumulation. Figure S6. RIP1 and RIP3 are expressed in MDSCs. Figure S7. IL6 expression level in human colon carcinoma and melanoma. Table S1. Colorectal cancer patient data. Table S2. Colon cancer patient data.
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- 2023
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25. Identification and Validation of Lactate Metabolism-Related Genes in Retinopathy of Prematurity
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Jiawei Xu, Yunpeng Zhang, Gan Rong, Zhuoqi Liu, and Yan Deng
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Purpose: Lactic acid metabolism may play an imperative role in the development of Retinopathy of Prematurity (ROP). Through bioinformatics analysis, we strive to identify the potential lactate metabolism-related genes (LMRGs) of ROP, and predict their functions and internal mechanisms. Methods: GSE158799 microarray dataset is located on the GPL18635 platform (Ion Torrent Proton), which is from the National Center for Biotechnology Information (NCBI). Firstly, we used R software to screen for potentially differentially expressed LMRGs related to ROP. Then we analyzed the differentially expressed genes (DEGs) by protein–protein interactions (PPI), correlation analysis, gene-ontology (GO) enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis, Gene Set Enrichment Analysis (GSEA), and assessment of immune cell infiltration. Results: A total of 41 differentially expressed LMRGs were identified among 284 genes in 3 P17_OIR mice and 3 P17_OIR mice. The results of PPI analysis indicated the interaction among these LMRGs. And the GO and KEGG analysis revealed several enriched pathways related to lactate metabolism, such as PI3K-Akt signaling pathway and Apelin signaling pathway. Moreover, immune infiltration analysis showed that the expression levels of immune cells in the sample changed greatly, especially M1 and M2 macrophages. Conclusion: We identified 41 potential LMRGs correlated to ROP. These DEGs may regulate lactate metabolism, leading to the changes of metabolism and immunity, thereby inducing the development of ROP. Our results will expand our understanding of the intrinsic mechanism of ROP and may be helpful for the directions for treatment of ROP in the future.
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- 2023
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26. Design and research of information systems for construction worker management services
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Chao Hu, Yiyan Zhuang, Zhuoqi Liu, and Hualong Cai
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- 2022
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27. Innovations in education of the medical molecular biology curriculum during the <scp>COVID</scp> ‐19 pandemic in <scp>China</scp>
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Xiaohong Yang, Daya Luo, Kemin Jie, Caifeng Xie, Xiangyang Xiong, Zhuoqi Liu, Chunhong Huang, and Shuo Tu
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China ,Process (engineering) ,Distance education ,Biochemistry ,Flipped classroom ,Education, Distance ,03 medical and health sciences ,Pandemic ,ComputingMilieux_COMPUTERSANDEDUCATION ,medicine ,Humans ,Sociology ,Pandemics ,Molecular Biology ,Curriculum ,030304 developmental biology ,0303 health sciences ,Medical education ,Education, Medical ,SARS-CoV-2 ,05 social sciences ,COVID-19 ,050301 education ,medicine.disease ,Mobile Applications ,Workflow ,0503 education ,Psychological trauma - Abstract
The COVID-19 pandemic is a huge challenge to education systems. Most governments around the world have temporarily closed schools, universities, and colleges. At the same time, teachers and students are encouraged to use the online and distance learning programs and platforms as an alternative. In the present study, we proposed a series of innovative solutions in Medical Molecular Biology education during the COVID-19 pandemic in China, including a flipped classroom model, live streaming course, chat Apps, and scientific papers on COVID-19 as additional learning material. Our results demonstrated that these innovations not only help teachers to maintain the teaching process as usual but also be useful for protecting students from psychological trauma. Our study indicates that online education with a well-designed workflow for conducting provides an alternative approach for teachers to maintain quality education during the onset of the emerging crisis.
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- 2021
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28. Intelligent community management information system
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Hualong Cai, Zhuoqi Liu, Ming Ouyang, and Yuan Yu
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- 2022
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29. Tyrosine hydroxylase involved in cuticle tanning and reproduction in the 28-spotted potato ladybeetle, Henosepilachna vigintioctopunctata
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Shimin Chen, Satyabrata Nanda, Mujuan Guo, Lan Kong, Chunxiao Yang, Zhuoqi Liu, Ran Gao, Baoli Qiu, Youjun Zhang, Xuguo Zhou, and Huipeng Pan
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Tyrosine 3-Monooxygenase ,Reproduction ,Pupa ,General Medicine ,Coleoptera ,Insect Science ,Larva ,Animals ,Insect Proteins ,Tyrosine ,Female ,RNA Interference ,Agronomy and Crop Science ,Solanum tuberosum - Abstract
Tyrosine hydroxylase (TH), a melanin synthesis pathway enzyme hydroxylating tyrosine into 3,4-dihydroxyphenylalanine, is involved in the pigmentation and sclerotization of insect cuticles. However, the role of TH in 28-spotted potato ladybeetle (Henosepilachna vigintioctopunctata), an emerging pest of the solanaceous crops has been explored to a limited extent. In this study, we integrated dietary RNA interference (RNAi) and hematoxylin and eosin (HE) staining with various bioassays to analyze the role of tyrosine hydroxylase (HvTH) throughout the developmental processes of Henosepilachna vigintioctopunctata.The results revealed that ingestion of dsHvTH led to cuticle tanning impairment, arrested larval feeding in the first and second instars of Henosepilachna vigintioctopunctata, and subsequently resulted in 100% mortality. The HE staining assays revealed that dsHvTH prevented new abdominal cuticle formation. A pharmacological study using 3-iodo-tyrosine (3-IT), a HvTH inhibitor, disrupted larval-larval-pupal cuticle tanning during the third-fourth instar larval development and eventually failed to pupate. Similarly, dsHvTH fed to fourth instars hindered larval-pupal-adult cuticle tanning, and the eclose adults were 100% malformed. Ingestion of dsHvTH or 3-IT significantly down-regulated HvTH, HvDDC, Hvebony, and Hvlaccase2 expression and reduced dopamine levels. Finally, HvTH silencing in adult females substantially reduced the offspring hatching rates.The collective results of the study suggested that HvTH plays conserved roles in larval-pupal-adult cuticle melanization and sclerotization while exhibiting a novel function in Henosepilachna vigintioctopunctata reproduction. © 2022 Society of Chemical Industry.
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- 2022
30. Autocrine IL6-Mediated Activation of the STAT3–DNMT Axis Silences the TNFα–RIP1 Necroptosis Pathway to Sustain Survival and Accumulation of Myeloid-Derived Suppressor Cells
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Dafeng Yang, Alyssa D. Smith, Amy V. Paschall, Thomas J. Hartney, Qimei Han, John D. Klement, Daniela Payne, Huidong Shi, Chunwan Lu, Priscilla S. Redd, Asha Nayak-Kapoor, Zhuoqi Liu, Mohammed L. Ibrahim, and Kebin Liu
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DNA (Cytosine-5-)-Methyltransferase 1 ,STAT3 Transcription Factor ,0301 basic medicine ,Cancer Research ,Programmed cell death ,Cell Survival ,Necroptosis ,Down-Regulation ,Mice, Transgenic ,Article ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Animals ,Humans ,DNA (Cytosine-5-)-Methyltransferases ,Autocrine signalling ,STAT3 ,Cells, Cultured ,Cell Proliferation ,Mice, Inbred BALB C ,Tumor microenvironment ,biology ,Interleukin-6 ,Tumor Necrosis Factor-alpha ,Chemistry ,Myeloid-Derived Suppressor Cells ,Gene Expression Regulation, Neoplastic ,Mice, Inbred C57BL ,Autocrine Communication ,030104 developmental biology ,Oncology ,Receptor-Interacting Protein Serine-Threonine Kinases ,030220 oncology & carcinogenesis ,DNA methylation ,Cancer research ,biology.protein ,Myeloid-derived Suppressor Cell ,Female ,IRF8 ,Signal Transduction - Abstract
Although accumulation of myeloid-derived suppressor cells (MDSC) is a hallmark of cancer, the underlying mechanism of this accumulation within the tumor microenvironment remains incompletely understood. We report here that TNFα–RIP1–mediated necroptosis regulates accumulation of MDSCs. In tumor-bearing mice, pharmacologic inhibition of DNMT with the DNA methyltransferease inhibitor decitabine (DAC) decreased MDSC accumulation and increased activation of antigen-specific cytotoxic T lymphocytes. DAC-induced decreases in MDSC accumulation correlated with increased expression of the myeloid cell lineage-specific transcription factor IRF8 in MDSCs. However, DAC also suppressed MDSC-like cell accumulation in IRF8-deficient mice, indicating that DNA methylation may regulate MDSC survival through an IRF8-independent mechanism. Instead, DAC decreased MDSC accumulation by increasing cell death via disrupting DNA methylation of RIP1-dependent targets of necroptosis. Genome-wide DNA bisulfite sequencing revealed that the Tnf promoter was hypermethylated in tumor-induced MDSCs in vivo. DAC treatment dramatically increased TNFα levels in MDSC in vitro, and neutralizing TNFα significantly increased MDSC accumulation and tumor growth in tumor-bearing mice in vivo. Recombinant TNFα induced MDSC cell death in a dose- and RIP1-dependent manner. IL6 was abundantly expressed in MDSCs in tumor-bearing mice and patients with human colorectal cancer. In vitro, IL6 treatment of MDSC-like cells activated STAT3, increased expression of DNMT1 and DNMT3b, and enhanced survival. Overall, our findings reveal that MDSCs establish a STAT3–DNMT epigenetic axis, regulated by autocrine IL6, to silence TNFα expression. This results in decreased TNFα-induced and RIP1-dependent necroptosis to sustain survival and accumulation. Significance: These findings demonstrate that targeting IL6 expression or function represent potentially effective approaches to suppress MDSC survival and accumulation in the tumor microenvironment.
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- 2020
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31. H3K9me3 represses G6PD expression to suppress the pentose phosphate pathway and ROS production to promote human mesothelioma growth
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Chunwan Lu, Dafeng Yang, John D. Klement, Yolonda L. Colson, Nicholas H. Oberlies, Cedric J. Pearce, Aaron H. Colby, Mark W. Grinstaff, Zhuoqi Liu, Huidong Shi, Han-Fei Ding, and Kebin Liu
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Mesothelioma ,Pentose Phosphate Pathway ,Cancer Research ,Disease Models, Animal ,Mice ,Carcinoma ,Genetics ,Animals ,Humans ,Mice, Nude ,Glucosephosphate Dehydrogenase ,Reactive Oxygen Species ,Molecular Biology - Abstract
The role of glucose-6-phosphate dehydrogenase (G6PD) in human cancer is incompletely understood. In a metabolite screening, we observed that inhibition of H3K9 methylation suppressed aerobic glycolysis and enhances the PPP in human mesothelioma cells. Genome-wide screening identified G6PD as an H3K9me3 target gene whose expression is correlated with increased tumor cell apoptosis. Inhibition of aerobic glycolysis enzyme LDHA and G6PD had no significant effects on tumor cell survival. Ablation of G6PD had no significant effect on human mesothelioma and colon carcinoma xenograft growth in athymic mice. However, activation of G6PD with the G6PD-selective activator AG1 induced tumor cell death. AG1 increased tumor cell ROS production and the resultant extrinsic and intrinsic death pathways, mitochondrial processes, and unfolded protein response in tumor cells. Consistent with increased tumor cell death in vitro, AG1 suppressed human mesothelioma xenograft growth in a dose-dependent manner in vivo. Furthermore, AG1 treatment significantly increased tumor-bearing mouse survival in an intra-peritoneum xenograft athymic mouse model. Therefore, in human mesothelioma and colon carcinoma, G6PD is not essential for tumor growth. G6PD acts as a metabolic checkpoint to control metabolic flux towards the PPP to promote tumor cell apoptosis, and its expression is repressed by its promotor H3K9me3 deposition.
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- 2021
32. RNAi suppression of the nuclear receptor FTZ-F1 impaired ecdysis, pupation, and reproduction in the 28-spotted potato ladybeetle, Henosepilachna vigintioctopunctata
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Zhuoqi Liu, Satyabrata Nanda, Chunxiao Yang, Shimin Chen, Mujuan Guo, Muhammad Musa Khan, Baoli Qiu, Youjun Zhang, Xuguo Zhou, and Huipeng Pan
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Health, Toxicology and Mutagenesis ,Larva ,Reproduction ,Animals ,Insect Proteins ,Receptors, Cytoplasmic and Nuclear ,RNA Interference ,General Medicine ,Molting ,Agronomy and Crop Science ,Drugs, Chinese Herbal ,Solanum tuberosum - Abstract
Fushi-tarazu factor 1 (FTZF1) is an ecdysone-inducible transcription factor that plays a vital role during the metamorphosis in insects. In this study, we functionally characterized HvFTZ-F1 in H. vigintioctopunctata, a dreadful solanaceous crop pest, by using a dietary RNA interference technique. The HvFTZ-F1 expression levels were elevated in the 1st and 2nd-instars before molting and declined immediately after ecdysis. The HvFTZ-F1 silencing led to high mortality in the 1st instars, while the expression of the osmosis-regulative gene, HvAQPAn.G, was significantly increased in the 1st instars. HvFTZ-F1 silencing downregulated the Halloween and 20E-related genes, decreased the ecdysteroids titer, suppressed the expression of pigmentation-related genes, and reduced the catecholamines titer. In the 4th instars, HvFTZ-F1 silencing caused 100% mortality by arresting the development at the prepupal stage and preventing new abdominal cuticle formation. In the female adults, HvFTZ-F1 silencing caused an evident decrease in fecundity, prolonged the pre-oviposition period, reduced the number of eggs and hatching rate, severely atrophied the ovaries. Moreover, the 20E-related genes and the dopamine synthesis genes were suppressed in the dsHvFTZ-F1-treated females. Overall, our results revealed that HvFTZ-F1 regulates ecdysis, pupation, and reproduction in H. vigintioctopunctata, thereby could be a promising molecular target for the development of RNAi-based biopesticides to control H. vigintioctopunctata.
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- 2021
33. RNA interference-mediated silencing of vATPase subunits A and E affect survival and development of the 28-spotted ladybeetle, Henosepilachna vigintioctopunctata
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Wei, Guo, Mujuan, Guo, Chunxiao, Yang, Zhuoqi, Liu, Shimin, Chen, Jing, Lü, Baoli, Qiu, Youjun, Zhang, Xuguo, Zhou, and Huipeng, Pan
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Coleoptera ,Vacuolar Proton-Translocating ATPases ,Larva ,Animals ,RNA Interference ,Insect Control ,RNA, Double-Stranded - Abstract
RNA interference (RNAi) has emerged as a powerful tool for developing novel management strategies for controlling insect pests. The 28-spotted ladybeetle, Henosepilachna vigintioctopunctata is one of the most important pests attacking solanaceous plants in Asia. In this study, the potential of dietary RNAi to manage H. vigintioctopunctata was investigated using both in vitro synthesized and bacterially expressed double-stranded RNAs (dsRNAs) of HvvATPase A and HvvATPase E. The expression levels of HvvATPase A and HvvATPase E were higher in Malpighian tubules than in other tissue types. The silencing of HvvATPase A and HvvATPase E led to significant mortality in H. vigintioctopunctata larvae. In addition, the ingestion of HvvATPase A and HvvATPase E significantly deterred feeding behavior and subsequently arrested the development of H. vigintioctopunctata. Notably, the bacterially expressed dsRNAs consistently caused higher mortality in larvae and adults. Finally, the nontarget effects of the dsRNAs of H. vigintioctopunctata on the predatory ladybeetle Propylaea japonica were evaluated. P. japonica 1st instar larvae were administered vATPase A and vATPase E dsRNAs from H. vigintioctopunctata and P. japonica under the worst-case scenario, in which dsGFP served as negative control. There were significant effects of dsHvvATPase A on P. japonica at the transcriptional level but not at the organismal level, whereas dsHvvATPase E did not effect P. japonica at either the transcriptional or the organismal level. Collectively, the results of the study suggest that HvvATPase A and HvvATPase E can act as novel molecular targets for the control of H. vigintioctopunctata.
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- 2020
34. Persistent STAT5 activation reprograms the epigenetic landscape in CD4 + T cells to drive polyfunctionality and antitumor immunity
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Richard A. McIndoe, Eun Jeong Park, David H. Munn, Nada S. Aboelella, Gary A. Piazza, Zhuoqi Liu, Hongyan Xu, Jiaqi Li, Lirong Pei, Kateryna Fesenkova, Bruce R. Blazar, Zhi-Chun Ding, Gang Zhou, and Huidong Shi
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CD4-Positive T-Lymphocytes ,Male ,Adoptive cell transfer ,Lymphoma ,T cell ,medicine.medical_treatment ,Primary Cell Culture ,Immunology ,Mice, Transgenic ,Immunotherapy, Adoptive ,Article ,Epigenesis, Genetic ,Mice ,Single-cell analysis ,Transduction, Genetic ,Cell Line, Tumor ,STAT5 Transcription Factor ,medicine ,Animals ,Humans ,RNA-Seq ,Epigenetics ,Receptors, Chimeric Antigen ,Chemistry ,General Medicine ,Immunotherapy ,Chimeric antigen receptor ,Cell biology ,Gene Expression Regulation, Neoplastic ,Disease Models, Animal ,medicine.anatomical_structure ,Cell culture ,Female ,Single-Cell Analysis ,CD8 - Abstract
The presence of polyfunctional CD4(+) T cells is often associated with favorable antitumor immunity. We report here that persistent activation of signal transducer and activator of transcription 5 (STAT5) in tumor-specific CD4(+) T cells drives the development of polyfunctional T cells. We showed that ectopic expression of a constitutively active form of murine STAT5A (CASTAT5) enabled tumor-specific CD4(+) T cells to undergo robust expansion, infiltrate tumors vigorously and elicit antitumor CD8(+) T cell responses in a CD4(+) T-cell adoptive transfer model system. Integrated epigenomic and transcriptomic analysis revealed that CASTAT5 induced genome-wide chromatin remodeling in CD4(+) T cells and established a distinct epigenetic and transcriptional landscape. Single-cell RNA sequencing analysis further identified a subset of CASTAT5-transduced CD4(+) T cells with a molecular signature indicative of progenitor polyfunctional T cells. The therapeutic significance of CASTAT5 came from our finding that adoptive transfer of T cells engineered to co-express CD19-targeting chimeric antigen receptor (CAR) and CASTAT5 gave rise to polyfunctional CD4(+) CAR T cells in a mouse B-cell lymphoma model. Notably, the optimal therapeutic outcome was obtained when both CD4(+) and CD8(+) CAR T cells were transduced with CASTAT5, indicating that CASTAT5 facilitates productive CD4 help to CD8(+) T cells. Furthermore, we provide evidence that CASTAT5 is functional in primary human CD4(+) T cells, underscoring its potential clinical relevance. Our results implicate STAT5 as a valid candidate for T cell engineering to generate polyfunctional, exhaustion-resistant, and tumor-tropic antitumor CD4(+) T cells to potentiate adoptive T-cell therapy for cancer.
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- 2020
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35. Macrophage balance fraction determines the degree of immunosuppression and metastatic ability of breast cancer
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Chao Wang, Daya Luo, Minghua Cao, Zhuoqi Liu, Yudi Yao, and Xiaoli Jiang
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0301 basic medicine ,medicine.medical_treatment ,Immunology ,Breast Neoplasms ,Exosomes ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,Immune system ,Cell Line, Tumor ,Tumor Microenvironment ,medicine ,Humans ,Immunology and Allergy ,Macrophage ,Breast ,Neoplasm Staging ,Pharmacology ,Tumor microenvironment ,business.industry ,Macrophages ,Computational Biology ,Immunosuppression ,DNA Methylation ,Middle Aged ,Prognosis ,medicine.disease ,Progression-Free Survival ,Microvesicles ,In vitro ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,030220 oncology & carcinogenesis ,Cancer research ,Female ,Tumor Escape ,business ,circulatory and respiratory physiology - Abstract
Macrophages are important immune cells in the tumor microenvironment and can be divided into two polarized subtypes, M1 and M2. M1 type macrophages have anti-tumor effects, while M2 type macrophages have pro-tumor effect. Most of the current researches are limited to the effect of M1 or M2 macrophages on tumors, while ignoring the overall balance of macrophages. Our research suggests that the macrophage balance fraction (MBF) can more effectively and comprehensively reflect the balance of tumor associated macrophages. Using bioinformatics analysis and in vitro experiments, we found that MBF is also an effective indicator of the degree of immunosuppression and metastatic ability of breast cancer, and different MBF environment can impact the migration and invasion ability of breast cancer cells. Finally, we also found that the mechanism of MBF changes in breast cancer may be affected by breast cancer-derived exosomes. In summary, MBF was proposed and validated as a novel indicator of macrophage balance state. Using this indicator, we found that the balance of macrophages can affect the degree of immunosuppression and metastatic ability of breast cancer.
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- 2021
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36. WDR5-H3K4me3 epigenetic axis regulates OPN expression to compensate PD-L1 function to promote pancreatic cancer immune escape
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Thomas Albers, Chunwan Lu, Alyssa D. Merting, Dakota B. Poschel, Zhuoqi Liu, John D. Klement, Kebin Liu, Jennifer L. Waller, Dafeng Yang, and Huidong Shi
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Male ,0301 basic medicine ,Cancer Research ,medicine.medical_treatment ,B7-H1 Antigen ,Epigenesis, Genetic ,Histones ,Mice ,0302 clinical medicine ,Pancreatic tumor ,Immunology and Allergy ,Medicine ,Immune Checkpoint Inhibitors ,RC254-282 ,Clinical/Translational Cancer Immunotherapy ,biology ,Intracellular Signaling Peptides and Proteins ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.anatomical_structure ,Oncology ,030220 oncology & carcinogenesis ,Molecular Medicine ,Female ,immunotherapy ,immune evation ,T cell ,Immunology ,03 medical and health sciences ,Immune system ,stomatognathic system ,Pancreatic cancer ,Animals ,Humans ,Pharmacology ,Tumor microenvironment ,business.industry ,CD44 ,tumor escape ,Immunotherapy ,myeloid-derived suppressor cells ,medicine.disease ,Mice, Inbred C57BL ,Pancreatic Neoplasms ,Disease Models, Animal ,HEK293 Cells ,030104 developmental biology ,Cancer research ,biology.protein ,Myeloid-derived Suppressor Cell ,Osteopontin ,business - Abstract
BackgroundDespite PD-L1 (Programmed death receptor ligand-1) expression on tumor cells and cytotoxic T lymphocytes tumor infiltration in the tumor microenvironment, human pancreatic cancer stands out as one of the human cancers that does not respond to immune checkpoint inhibitor (ICI) immunotherapy. Epigenome dysregulation has emerged as a major mechanism in T cell exhaustion and non-response to ICI immunotherapy, we, therefore, aimed at testing the hypothesis that an epigenetic mechanism compensates PD-L1 function to render pancreatic cancer non-response to ICI immunotherapy.MethodsTwo orthotopic pancreatic tumor mouse models were used for chromatin immunoprecipitation-Seq and RNA-Seq to identify genome-wide dysregulation of H3K4me3 and gene expression. Human pancreatic tumor and serum were analyzed for osteopontin (OPN) protein level and for correlation with patient prognosis. OPN and PD-L1 cellular location were determined in the tumors using flow cytometry. The function of WDR5-H3K4me3 axis in OPN expression were determined by Western blotting. The function of H3K4me3-OPN axis in pancreatic cancer immune escape and response to ICI immunotherapy was determined in an orthotopic pancreatic tumor mouse model.ResultsMouse pancreatic tumors have a genome-wide increase in H3K4me3 deposition as compared with normal pancreas. OPN and its receptor CD44 were identified being upregulated in pancreatic tumors by their promoter H3K4me3 deposition. OPN protein is increased in both tumor cells and tumor-infiltrating immune cells in human pancreatic carcinoma and is inversely correlated with pancreatic cancer patient survival. OPN is primarily expressed in tumor cells and monocytic myeloid-derived suppressor cells (M-MDSCs), whereas PD-L1 is expressed in tumor cells, M-MDSCs, polymorphonuclear MDSCs and tumor-associated macrophages. WDR5 is essential for H3K4me3-specific histone methyltransferase activity that regulates OPN expression in tumor cells and MDSCs. Inhibition of WDR5 significantly decreased OPN protein level. Inhibition of WDR5 or knocking out of OPN suppressed orthotopic mouse pancreatic tumor growth. Inhibition of WDR5 also significantly increased efficacy of anti-PD-1 immunotherapy in suppression of mouse pancreatic tumor growth in vivo.ConclusionsOPN compensates PD-L1 function to promote pancreatic cancer immune escape. Pharmacological inhibition of the WDR5-H3K4me3 epigenetic axis is effective in suppressing pancreatic tumor immune escape and in improving efficacy of anti-PD-1 immunotherapy in pancreatic cancer.
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- 2021
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37. Protective Roles and Mechanisms of Taurine on Myocardial Hypoxia/Reoxygenation-Induced Apoptosis
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Xiaohong, Yang, Jingjing, Fu, Huifang, Wan, Zhuoqi, Liu, Lehan, Yu, Bo, Yu, and Fusheng, Wan
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Original Article - Abstract
BACKGROUND: This study aimed to investigate the protective roles and mechanisms of taurine on myocardial ischemia/reperfusion (I/R)-induced cell apoptosis, and thus provide evidence for the treatment of myocardial I/R injury and the development of related drugs. METHODS: The cardiomyocytes of neonatal rats were used to prepare the hypoxia/reoxygenation (H/R) injury model; gene transfection and small interfering RNA (siRNA) target gene silencing techniques were performed, along with methyl thiazolyl tetrazolium (MTT) assay to detect cell survival, flow cytometry to detect cell apoptosis, and Western blot to measure protein expressions. RESULTS: Compared with the H/R group, the apoptosis rates of cardiomyocytes in the three taurine (TAU)-protection groups were significantly decreased (p < 0.05). As the TAU concentration increased, the expression of Bcl-2 protein in H/R cardiomyocytes also gradually increased (p < 0.05), while the protein expressions of p53 up-regulated modulator of apoptosis (PUMA), C/EBP homologous protein (CHOP), Bax, glucose-regulated protein 78kD (GRP78), and caspase-3 gradually decreased (p < 0.01). TAU strongly downregulated the expression of PUMA-transfected cardiomyocytes. After targeted silencing of PUMA, the apoptosis rate was significantly decreased, while the expression of Bcl-2 protein was increased, and that of Bax protein was decreased (p < 0.05). CONCLUSIONS: TAU significantly inhibited myocardial H/R-induced apoptosis, and the mechanism may be related to a downregulated expression of PUMA.
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- 2019
38. Screening of immunosuppressive factors for biomarkers of breast cancer malignancy phenotypes and subtype-specific targeted therapy
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Caiyun Qian, Yunlei Song, Ping Wang, Shuhua Zhang, Xiaohong Yang, Jiaxuan Liu, Chao Wang, Zhuoqi Liu, Daya Luo, Weifeng Zhu, Fusheng Wan, and Qiang Liu
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Microarray ,Bioinformatics ,Therapeutic target ,medicine.medical_treatment ,Immunology ,lcsh:Medicine ,Malignancy ,General Biochemistry, Genetics and Molecular Biology ,Targeted therapy ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,Online databases ,Medicine ,Survival rate ,030304 developmental biology ,0303 health sciences ,business.industry ,General Neuroscience ,lcsh:R ,General Medicine ,Biomarker ,medicine.disease ,Phenotype ,Immunosuppressive factor ,Oncology ,030220 oncology & carcinogenesis ,Cancer research ,Immunohistochemistry ,Biomarker (medicine) ,General Agricultural and Biological Sciences ,business - Abstract
We aimed to screen and validate immunosuppressive factors in luminal- and basal-like breast cancer cell lines and tissue samples associated with malignant phenotypes. The mRNA microarray datasets, GSE40057 and GSE1561, were downloaded and remodeled, and differentially expressed genes were identified. Weighted gene co-expression network analysis (WGCNA) and gene ontology (GO) and KEGG pathway enrichment analysis were performed to explore the immune-related events related to the basal-like breast cancer. The online resources, GOBO, Kaplan–Meier Plotter and UALCAN, were employed to screen for immunosuppressive factors associated with breast cancer malignant phenotypes. Immunohistochemistry was used to evaluate VEGFA and MIF levels in breast tumors and normal breast tissues; qPCRs and western blots were used to validate the expression of clinical immuno-oncology (IO) therapeutic targets CD274 (PD-L1) and IL8 in cell lines. The results showed that various immune-related events contribute to basal-like breast cancer. First, TGFβ1 and IL8 had higher average expression levels in more malignant cell lines; second, MIF and VEGFA had higher average expression levels in more malignant breast cancer tissues, and the high expression levels were associated with poor survival rate. Third, IO targets CD274 and IL8 which were confirmed to be more suitable for the treatment of basal-like breast cancer. In view of the above, during the formation and development of breast cancer, immune-related genes are always activated, and immunosuppressive factors, IL8, TGFβ1, MIF, and VEGFA are up-regulated. Such molecules could be used as biomarkers for breast cancer prognosis. However, because individual immune-related factors can play several biological roles, the mechanistic relationship between immunosuppressive factors and breast cancer malignant phenotypes and the feasibility of their application as drug targets require further investigation.
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- 2019
39. Rs3842530 Polymorphism in MicroRNA-205 Host Gene in Lung and Breast Cancer Patients
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Jiangjie Wang, Xiaohong Yang, Huan Deng, Xiao-hua Jie, Fan Zou, Jizhu Li, Daya Luo, Mengmeng Wang, Zhuoqi Liu, Ruiqi Fan, Hua Li, and Xiong Peng
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0301 basic medicine ,Oncology ,medicine.medical_specialty ,Lung Neoplasms ,Breast Neoplasms ,Biology ,Polymorphism, Single Nucleotide ,Breast Neoplasms, Male ,03 medical and health sciences ,Breast cancer ,Lab/In Vitro Research ,Risk Factors ,Internal medicine ,Cell Line, Tumor ,Gene expression ,microRNA ,Genetic variation ,medicine ,Humans ,Epigenetics ,Lung cancer ,Promoter Regions, Genetic ,Gene ,Genetic Variation ,General Medicine ,DNA Methylation ,medicine.disease ,Prognosis ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,030104 developmental biology ,DNA methylation ,MCF-7 Cells ,Female - Abstract
Background The expression of miR-205 is closely related to the occurrence, development, and prognosis of lung cancer and breast cancer. However, studies show that it plays opposite roles in different tumor types. Because the expression and regulation of miR-205 are primarily confined to epigenetic areas, whether genetic variation of miR-205 is related to the occurrence or to the development of tumors has not been reported. The aim of this study was to screen genetic variation of miR-205 gene and to investigate its association with the risk and development of lung and breast cancer. Material/Methods Genomic DNA was extracted from cultured tumor cell lines and formalin-fixed and paraffin-embedded lung and breast tissue samples. Bisulfite Clone Sequencing (BCS) and qRT-PCR were employed to detect the DNA methylation status and gene expression of the miR-205 gene, respectively. Genetic variation of miR-205 and miR-205HG were genotyped with PCR-sequencing method. Immunohistochemical analysis for ER, PR, and HER2 was performed on breast tissue samples. Results A polymorphism, rs3842530, located downstream of the miR-205 gene and in the fourth exon of the miR-205 host gene (miR-205HG), was screened. rs3842530 had no correlation with the risk of breast cancer, but was associated with the risk of lung cancer (P
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- 2016
40. Autocrine IL6 activates the STAT3-DNMT axis to silence the TNFa-RIP1 necroptosis pathway to sustain myeloid-derived suppressor cell survival and accumulation
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Alyssa D. Smith, Chunwan Lu, Daniela Payne, Amy V Paschall, John David Klement, Priscilla S Redd, Mohammed Ibrahim, Dafeng Yang, Qimei Han, Zhuoqi Liu, Huidong Shi, Thomas Hartney, Asha Nayak-Kapoor, and Kebin Liu
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Immunology ,Immunology and Allergy - Abstract
Accumulation of myeloid-derived suppressor cells (MDSCs) is a hallmark of cancer. However, the underlying mechanism of MDSC accumulation in the tumor microenvironment (TME) remain incompletely understood. We report that MDSC accumulation is regulated by the TNFα-RIP1-mediated necroptosis. We determined that inhibition of DNMTs with Decitabine (DAC) abolished MDSC accumulation and increased activation of antigen-specific cytotoxic T lymphocytes (CTLs) in tumor-bearing mice. DAC-induced decrease of MDSC accumulation is correlated with increased IRF8 expression in MDSCs. However, DAC also abolished MDSC-like cell accumulation in IRF8 KO mice, indicating that DNA methylation does not regulate MDSC lineage differentiation but mediates MDSC accumulation at post differentiation stage. We determined that DAC decreased MDSC accumulation through increasing cell death and identified RIP1-dependent necroptosis as target of DNA methylation in MDSCs. Genome-wide DNA bisulfite sequencing revealed that the Tnf promoter is hypermethylated in tumor-induced MDSCs in vivo. Consequently, DAC dramatically increased TNFα level in MDSCs and neutralizing TNFα significantly decreased MDSC cell death. Furthermore, recombinant TNFα induced MDSC cell death in a does- and RIP1-dependent manner. IL6 which is expressed in MDSCs in tumor-bearing mice and human colorectal cancer patients. Our data shows that the autocrine IL6 activates the STAT3-DNMT axis to epigenetically silence the TNFα-RIP1 necroptosis pathway to sustain MDSC survival and accumulation in cancer. Targeting the TNFα-RIP1 necroptosis is potentially an effective approach to supress MDSCs to activate tumor-reactive CTLs in the TME.
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- 2020
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41. An integrative bioinformatics analysis identified miR-375 as a candidate key regulator of malignant breast cancer
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Bo Huang, Ying-qun Xiao, Qiang Liu, Daya Luo, Caiyun Qian, Shuhua Zhang, Weifeng Zhu, Zhuoqi Liu, Hang Du, Xiaohong Yang, Xinyu Zhang, Ping Zhang, Ping Wang, and Jiaxuan Liu
- Subjects
0106 biological sciences ,0301 basic medicine ,RNA, Untranslated ,Breast Neoplasms ,Biology ,medicine.disease_cause ,01 natural sciences ,03 medical and health sciences ,Breast cancer ,Mir-375 ,Peptide Initiation Factors ,microRNA ,Genetics ,medicine ,Biomarkers, Tumor ,Humans ,Gene Regulatory Networks ,KEGG ,Oncogene ,L-Lactate Dehydrogenase ,Microarray analysis techniques ,Cancer ,Computational Biology ,RNA-Binding Proteins ,General Medicine ,medicine.disease ,Gene Expression Regulation, Neoplastic ,Isoenzymes ,MicroRNAs ,030104 developmental biology ,Cancer research ,MCF-7 Cells ,Female ,Carcinogenesis ,Carrier Proteins ,010606 plant biology & botany - Abstract
MicroRNAs (miRNAs) are key regulators that play important biological roles in carcinogenesis and are promising biomarkers for cancer diagnosis and therapy. hsa-miR-375-3p (miR-375) has been suggested to serve as a tumor suppressor or oncogene in various tumor types; however, its specific expression and potential regulatory role in malignant breast cancer remain unclear. In this study, the results from noncoding RNA microarray analysis indicated that the miR-375 expression level is significantly decreased in malignant basal-like breast cancer compared with luminal-like breast cancer. A total of 1895 co-downregulated and 1645 co-upregulated genes were identified in miR-375 mimic-transfected basal-like breast cancer cell lines. Predicted miR-375 targets were obtained from the online databases TargetScan and DIANA-microT-CDS. Combined KEGG enrichment analysis for coregulated genes and predicted miR-375 targets provided information and revealed differences in potential dynamic signaling pathways regulated by miR-375 and also indicated specific regulatory pathways, such as RNA transport and processing, in basal-like breast cancer. Additionally, gene expression microarray analysis accompanied by UALCAN analysis was performed to screen upregulated genes in the basal-like subtype. Four potential key genes, including LDHB, CPNE8, QKI, and EIF5A2, were identified as candidate target genes of miR-375. Therefore, the present study demonstrated that miR-375 may be a potential key regulator and provide a promising direction for diagnostic and therapeutic developments for malignant breast cancer.
- Published
- 2018
42. Roles of the MST1-JNK signaling pathway in apoptosis of colorectal cancer cells induced by Taurine
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Yanqin Xia, Xiali Zhang, Bo Yu, Liqiao Liu, Lehan Yu, Weifeng Zhu, Fusheng Wan, Zhuoqi Liu, Huifang Wan, and Shuo Tu
- Subjects
0301 basic medicine ,Taurine ,Small interfering RNA ,MAP Kinase Signaling System ,lcsh:Medicine ,colorectal cancer ,Protein Serine-Threonine Kinases ,Flow cytometry ,03 medical and health sciences ,chemistry.chemical_compound ,Cell Line, Tumor ,medicine ,Humans ,medicine.diagnostic_test ,Kinase ,business.industry ,mammalian male sterile line 20-like kinase 1 ,lcsh:R ,apoptosis ,c-Jun amino terminal kinase ,General Medicine ,Transfection ,Original Articles ,030104 developmental biology ,chemistry ,Apoptosis ,Cancer cell ,Cancer research ,Signal transduction ,Caco-2 Cells ,business ,Colorectal Neoplasms - Abstract
The aim of this study was to observe the impact of the mammalian sterile 20-like kinase 1-c-Jun N-terminal kinase (MST1-JNK) signaling pathway on apoptosis in colorectal cancer (CRC) cells induced by Taurine (Tau). Caco-2 and SW620 cells transfected with p-enhanced green fluorescent protein (EGFP)-MST1 or short interfering RNA (siRNA)-MST1 were treated with Tau for 48 h. Apoptosis was detected by flow cytometry, and the levels of MST1 and JNK were detected by western blotting. Compared with the control group, 80 mM Tau could significantly induce apoptosis of CRC cells, and the apoptotic rate increased with increasing Tau concentration ( P < 0.01). Meanwhile, the protein levels of MST1 and phosphorylated (p)-JNK in Caco-2 cells increased significantly ( P < 0.01). The apoptotic rate of the p-EGFP-MST1 plasmid-transfected cancer cells was significantly higher than that of the control group ( P < 0.05); however, the apoptotic rate of the p-EGFP-MST1+Tau group was increased further ( P < 0.01). Silencing the MST1 gene could decrease the apoptotic rate of cancer cells, and Tau treatment could reverse this decrease. Blocking the JNK signaling pathway significantly reduced the Tau-induced apoptotic rate of CRC cells. Thus, the MST1-JNK pathway plays an important role in Tau-induced apoptosis of CRC cells. Keywords: Taurine; mammalian male sterile line 20-like kinase 1; c-Jun amino terminal kinase; colorectal cancer; apoptosis
- Published
- 2018
43. Identification of potential crucial genes and pathways associated with vein graft restenosis based on gene expression analysis in experimental rabbits
- Author
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Xiang Zhong, Li Wan, Qun Wang, Qiang Liu, Xiujie Yin, Mingzhu Li, Zhuoqi Liu, and Liqiao Liu
- Subjects
0301 basic medicine ,Microarray ,Bioinformatics ,Cardiology ,lcsh:Medicine ,Disease ,Computational biology ,Differentially expressed gene ,Biology ,General Biochemistry, Genetics and Molecular Biology ,DNA sequencing ,Bioconductor ,03 medical and health sciences ,Bioinformatics analysis ,Gene expression ,Genetics ,Gene ,Microarray data ,Microarray analysis techniques ,General Neuroscience ,lcsh:R ,Occlusive artery disease ,General Medicine ,Cell Biology ,Genomics ,Cell cycle ,030104 developmental biology ,Vein graft restenosis ,General Agricultural and Biological Sciences - Abstract
Occlusive artery disease (CAD) is the leading cause of death worldwide. Bypass graft surgery remains the most prevalently performed treatment for occlusive arterial disease, and veins are the most frequently used conduits for surgical revascularization. However, the clinical efficacy of bypass graft surgery is highly affected by the long-term potency rates of vein grafts, and no optimal treatments are available for the prevention of vein graft restenosis (VGR) at present. Hence, there is an urgent need to improve our understanding of the molecular mechanisms involved in mediating VGR. The past decade has seen the rapid development of genomic technologies, such as genome sequencing and microarray technologies, which will provide novel insights into potential molecular mechanisms involved in the VGR program. Ironically, high throughput data associated with VGR are extremely scarce. The main goal of the current study was to explore potential crucial genes and pathways associated with VGR and to provide valid biological information for further investigation of VGR. A comprehensive bioinformatics analysis was performed using high throughput gene expression data. Differentially expressed genes (DEGs) were identified using the R and Bioconductor packages. After functional enrichment analysis of the DEGs, protein–protein interaction (PPI) network and sub-PPI network analyses were performed. Finally, nine potential hub genes and fourteen pathways were identified. These hub genes may interact with each other and regulate the VGR program by modulating the cell cycle pathway. Future studies focusing on revealing the specific cellular and molecular mechanisms of these key genes and pathways involved in regulating the VGR program may provide novel therapeutic targets for VGR inhibition.
- Published
- 2018
44. Effect of taurine on the proliferation and apoptosis of human hepatocellular carcinoma HepG2 cells
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Daya Luo, Xiali Zhang, Fusheng Wan, Shuo Tu, Hua Li, Xiaohong Yang, Huifang Wan, Lehan Yu, and Zhuoqi Liu
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Cancer Research ,biology ,Cell growth ,Cell ,Articles ,General Medicine ,Transfection ,Cell cycle ,biology.organism_classification ,Molecular biology ,medicine.anatomical_structure ,Immunology and Microbiology (miscellaneous) ,Apoptosis ,Puma ,biology.protein ,medicine ,Gene silencing ,p53 upregulated modulator of apoptosis - Abstract
The aim of the present study was to observe the effect and molecular mechanism of taurine (Tau) on the cell proliferation and apoptosis of human hepatocellular carcinoma (HHCC) HepG2 cells. HHCC HepG2 cells were used as target cells, and the cell survival rate was assessed using a multi-time-step method. The p53 upregulated modulator of apoptosis (PUMA) gene was transiently transfected by lipofection and subsequently silenced with specific small interfering (si)RNA. The cell apoptosis rate was detected by flow cytometry, and protein expression levels were analyzed with western blotting. Addition of 20–160 mM Tau was shown to have a significant inhibitory effect on cell proliferation, while promoting the induction of HHCC HepG2 cell apoptosis (P
- Published
- 2015
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- View/download PDF
45. Factors involved in cancer metastasis: a better understanding to 'seed and soil' hypothesis
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Daya Luo, Hongfei Zhang, Caiyun Qian, Zhuoqi Liu, Qiang Liu, and Xiaoli Jiang
- Subjects
0301 basic medicine ,Cancer Research ,Knowledge management ,Cancer metastasis ,Review ,Biology ,lcsh:RC254-282 ,Metastasis ,03 medical and health sciences ,Soil ,medicine ,Biomarkers, Tumor ,Tumor Microenvironment ,Humans ,Neoplasm Metastasis ,Seed ,business.industry ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,Neoplastic Cells, Circulating ,Metastasis research ,030104 developmental biology ,Oncology ,Neoplastic Stem Cells ,Molecular Medicine ,business - Abstract
Metastasis has intrigued researchers for more than 100 years. Despite the development of technologies and therapeutic strategies, metastasis is still the major cause of cancer-related death until today. The famous “seed and soil” hypothesis is widely cited and accepted, and it still provides significant instructions in cancer research until today. To our knowledge, there are few reviews that comprehensively and correlatively focus on both the seed and soil factors involved in cancer metastasis; moreover, despite the fact that increasingly underlying mechanisms and concepts have been defined recently, previous perspectives are appealing but may be limited. Hence, we reviewed factors involved in cancer metastasis, including both seed and soil factors. By integrating new concepts with the classic hypothesis, we aim to provide a comprehensive understanding of the “seed and soil” hypothesis and to conceptualize the framework for understanding factors involved in cancer metastasis. Based on a dynamic overview of this field, we also discuss potential implications for future research and clinical therapeutic strategies.
- Published
- 2017
46. Screening of Immunosuppressive Factors for Identifying Breast Cancer Malignant Phenotypes Using mRNA Microarray Datasets
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Bo Huang, Yingquan Xiao, Yun-Lei Song, Fusheng Wan, Zhuoqi Liu, Lehan Yu, Xi Liu, Daya Luo, Xiaohong Yang, and Weifeng Zhu
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Tissue microarray ,Microarray ,molecular_biology ,business.industry ,Bioinformatics ,medicine.disease ,Phenotype ,Vascular endothelial growth factor A ,Breast cancer ,Cell culture ,Cancer research ,Biomarker (medicine) ,Immunohistochemistry ,Medicine ,business - Abstract
To screen and validate immunosuppressive factors in luminal- and basal-like breast cancer cell lines and tissue samples associated with malignant phenotypes. The mRNA microarray datasets, GSE40057 and GSE1561, were downloaded and remodelled. Differentially expressed genes (DEGs) were identified. Enrichment analyses performed and the online resources, GOBO and Kaplan-Meier Plotter, were employed to screen for immunosuppressive factors associated with breast cancer malignant phenotypes. qRT-PCR and western blot were used to validate the expression of CD274 and IL8 in cell lines and immunohistochemical detected the MIF and VEGFA on tissue microarrays. The results showed that CD274 and IL8 were both upregulated in basal-like cell lines. That MIF expression was dramatically increased in patients with breast cancer metastases (p
- Published
- 2016
47. Detection of single nucleotide polymorphisms by PCR conformation-difference gel electrophoresis
- Author
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Weifeng Zhu, Kemin Jie, Daya Luo, Fusheng Wan, Erming Zeng, Yan Deng, Lehan Yu, and Zhuoqi Liu
- Subjects
Time Factors ,Genotype ,Difference gel electrophoresis ,Bioengineering ,Single-nucleotide polymorphism ,Heteroduplex Analysis ,Biology ,Polymerase Chain Reaction ,Polymorphism, Single Nucleotide ,Applied Microbiology and Biotechnology ,chemistry.chemical_compound ,Humans ,Molecular Biology ,Genotyping ,Gel electrophoresis ,Genetics ,General Medicine ,Molecular biology ,SNP genotyping ,chemistry ,Costs and Cost Analysis ,Nucleic Acid Conformation ,Electrophoresis, Polyacrylamide Gel ,Human genome ,DNA ,Biotechnology - Abstract
The most common genetic variations in the human genome, single nucleotide polymorphisms (SNPs), are ideal biomarkers and are used extensively in disease research. Here we introduce a novel method of PCR-conformation-difference gel electrophoresis (PCR-CDGE) used for detecting SNPs. The principle of PCR-CDGE relies PCR products from different homozygous DNA samples showing dissimilar migration patterns upon PAGE due to their conformational differences. PCR products from heterozygous DNA samples may exhibit two or more bands in PAGE because of the existence of DNA homoduplexes and heteroduplexes. In this study, analysis of two SNPs showed that PCR-CDGE is an accurate, simple, rapid, low-cost, and high-throughput genotyping method that could be used in most laboratories.
- Published
- 2012
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- View/download PDF
48. Identification of potential crucial genes and pathways associated with vein graft restenosis based on gene expression analysis in experimental rabbits.
- Author
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Qiang Liu, Xiujie Yin, Mingzhu Li, Li Wan, Liqiao Liu, Xiang Zhong, Zhuoqi Liu, and Qun Wang
- Subjects
GENE expression ,ARTERIAL occlusions ,MICROARRAY technology ,REVASCULARIZATION (Surgery) ,VEINS - Abstract
Occlusive artery disease (CAD) is the leading cause of death worldwide. Bypass graft surgery remains the most prevalently performed treatment for occlusive arterial disease, and veins are the most frequently used conduits for surgical revascularization. However, the clinical efficacy of bypass graft surgery is highly affected by the long-term potency rates of vein grafts, and no optimal treatments are available for the prevention of vein graft restenosis (VGR) at present. Hence, there is an urgent need to improve our understanding of the molecular mechanisms involved in mediating VGR. The past decade has seen the rapid development of genomic technologies, such as genome sequencing and microarray technologies, which will provide novel insights into potential molecular mechanisms involved in the VGR program. Ironically, high throughput data associated with VGR are extremely scarce. The main goal of the current study was to explore potential crucial genes and pathways associated with VGR and to provide valid biological information for further investigation of VGR. A comprehensive bioinformatics analysis was performed using high throughput gene expression data. Differentially expressed genes (DEGs) were identified using the R and Bioconductor packages. After functional enrichment analysis of the DEGs, protein–protein interaction (PPI) network and sub-PPI network analyses were performed. Finally, nine potential hub genes and fourteen pathways were identified. These hub genes may interact with each other and regulate the VGR program by modulating the cell cycle pathway. Future studies focusing on revealing the specific cellular and molecular mechanisms of these key genes and pathways involved in regulating the VGR program may provide novel therapeutic targets for VGR inhibition. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
49. Exosomal microRNA remodels the tumor microenvironment
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Caiyun Qian, Zhuoqi Liu, Song Hu, Daya Luo, Xiaoli Jiang, and Qiang Liu
- Subjects
0301 basic medicine ,Stromal cell ,lcsh:Medicine ,Tumor cells ,Biology ,Biochemistry ,Exosome ,General Biochemistry, Genetics and Molecular Biology ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,Research based ,microRNA ,medicine ,Exogenous ,Tumor microenvironment ,Endogenous ,General Neuroscience ,lcsh:R ,General Medicine ,medicine.disease ,Crosstalk (biology) ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Cancer research ,General Agricultural and Biological Sciences - Abstract
Tumor occurrence, progression and metastasis depend on the crosstalk between tumor cells and stromal cells and on extrinsic factors outside the tumor microenvironment. Exosomal microRNA (miRNA) not only is involved in communications within the tumor microenvironment but also mediates communications between the extrinsic environment and tumor microenvironment. However, most reviews have been limited to the role of endogenous exosomal miRNA in remodeling the tumor microenvironment. Hence, we herein review the role of endogenous exosomal miRNA in mediating intercellular crosstalk within the tumor microenvironment, inducing the formation of the premetastatic niche. To place our vision outside the microenvironment, we also summarize for the first time the most recent studies regarding how exogenous miRNA derived from milk, plants and microbes influences the tumor microenvironment. Furthermore, to improve the value of exosomal miRNA in cancer research and clinical applications, we also provide some novel ideas for future research based on the comprehensive role of exosomal miRNA in remodeling the tumor microenvironment.
- Published
- 2017
- Full Text
- View/download PDF
50. Rs3842530 Polymorphism in MicroRNA-205 Host Gene in Lung and Breast Cancer Patients.
- Author
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Fan Zou, Jizhu Li, Xiaohua Jie, Xiong Peng, Ruiqi Fan, Mengmeng Wang, Jiangjie Wang, Zhuoqi Liu, Hua Li, Huan Deng, Xiaohong Yang, and Daya Luo
- Published
- 2018
- Full Text
- View/download PDF
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