162 results on '"Zedong Jiang"'
Search Results
2. Revealing the crucial roles of suppressive immune microenvironment in cardiac myxoma progression
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Zedong Jiang, Qianlong Kang, Hong Qian, Zhijie Xu, Huan Tong, Jiaqing Yang, Li Li, Renwei Li, Guangqi Li, Fei Chen, Nan Lin, Yunuo Zhao, Huashan Shi, Juan Huang, and Xuelei Ma
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Medicine ,Biology (General) ,QH301-705.5 - Abstract
Abstract Cardiac myxoma is a commonly encountered tumor within the heart that has the potential to be life-threatening. However, the cellular composition of this condition is still not well understood. To fill this gap, we analyzed 75,641 cells from cardiac myxoma tissues based on single-cell sequencing. We defined a population of myxoma cells, which exhibited a resemblance to fibroblasts, yet they were distinguished by an increased expression of phosphodiesterases and genes associated with cell proliferation, differentiation, and adhesion. The clinical relevance of the cell populations indicated a higher proportion of myxoma cells and M2-like macrophage infiltration, along with their enhanced spatial interaction, were found to significantly contribute to the occurrence of embolism. The immune cells surrounding the myxoma exhibit inhibitory characteristics, with impaired function of T cells characterized by the expression of GZMK and TOX, along with a substantial infiltration of tumor-promoting macrophages expressed growth factors such as PDGFC. Furthermore, in vitro co-culture experiments showed that macrophages promoted the growth of myxoma cells significantly. In summary, this study presents a comprehensive single-cell atlas of cardiac myxoma, highlighting the heterogeneity of myxoma cells and their collaborative impact on immune cells. These findings shed light on the complex pathobiology of cardiac myxoma and present potential targets for intervention.
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- 2024
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3. Improving the thermostability of Pseudoalteromonas Porphyrae κ-carrageenase by rational design and MD simulation
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Yuyan Sang, Xiaoyi Huang, Hebin Li, Tao Hong, Mingjing Zheng, Zhipeng Li, Zedong Jiang, Hui Ni, Qingbiao Li, and Yanbing Zhu
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Mutant κ-carrageenase ,Folding free energy change ,Molecular dynamic simulation ,Thermostability improvement ,Biotechnology ,TP248.13-248.65 ,Microbiology ,QR1-502 - Abstract
Abstract The industrial applications of the κ-carrageenases have been restricted by their poor thermostability. In this study, based on the folding free energy change (ΔΔG) and the flexibility analysis using molecular dynamics (MD) simulation for the alkaline κ-carrageenase KCgCD from Pseudoalteromonas porphyrae (WT), the mutant S190R was identified with improved thermostability. After incubation at 50 °C for 30 min, the residual activity of S190R was 63.7%, 25.7% higher than that of WT. The T m values determined by differential scanning calorimetry were 66.2 °C and 64.4 °C for S190R and WT, respectively. The optimal temperature of S190R was 10 °C higher than that of WT. The κ-carrageenan hydrolysates produced by S190R showed higher xanthine oxidase inhibitory activity compared with the untreated κ-carrageenan. MD simulation analysis of S190R showed that the residues (V186–M194 and P196–G197) in F5 and the key residue R150 in F3 displayed the decreased flexibility, and residues of T169–N173 near the catalytic center displayed the increased flexibility. These changed flexibilities might be the reasons for the improved thermostability of mutant S190R. This study provides a useful rational design strategy of combination of ΔΔG calculation and MD simulation to improve the κ-carrageenase’s thermostability for its better industrial applications.
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- 2024
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4. Wrapping gastroduodenal artery stump with the teres hepatis ligament to prevent postpancreatectomy hemorrhage after pancreaticoduodenectomy
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Xiang Zheng, Zedong Jiang, Zhenzhen Gao, Bo Zhou, Guogang Li, Sheng Yan, and Xiaoping Mei
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Pancreaticoduodenectomy ,Gastroduodenal artery ,Postpancreatectomy hemorrhage ,Pancreatic fistula ,Teres hepatis ligament ,Surgery ,RD1-811 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Gastroduodenal artery (GDA) stump erosion hemorrhage is a fatal complication after pancreaticoduodenectomy. This study aimed to determine whether GDA stump wrapping with the teres hepatis ligament during pancreaticoduodenectomy decreased the incidence of postpancreatectomy hemorrhage (PPH). Methods We reviewed 307 patients who had undergone pancreaticoduodenectomy between March 2019 and June 2022. The patients were divided into two groups according to application of GDA stump wrapping with the teres hepatis ligament: GDA wrapping group (165 patients) and no-wrapping group (142 patients). The perioperative data were compared between the groups. Results The clinical characteristics were balanced between the two groups. Grades B and C PPH and GDA-stump-related hemorrhage were significantly reduced in the GDA wrapping group compared with the no-wrapping group (PPH B/C, 13.4% vs 6.1%, P = 0.029; GDA hemorrhage, 5.6% vs 0.6%, P = 0.014). No difference was observed in the incidence of clinically relevant postoperative pancreatic fistula, biliary leak, intra-abdominal abscess, delayed gastric emptying, 90-day mortality, and postoperative hospital stay between the two groups. Conclusion Wrapping GDA stump with the teres hepatis ligament reduced the incidence of GDA-stump-related PPH. Therefore, the wrapping technique is a simple and effective strategy to prevent PPH. Prospective studies are needed to confirm the benefit of this procedure.
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- 2023
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5. LMP2-mRNA lipid nanoparticle sensitizes EBV-related tumors to anti-PD-1 therapy by reversing T cell exhaustion
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Yu Xiang, Miaomiao Tian, Juan Huang, Yueyi Li, Guangqi Li, Xue Li, Zedong Jiang, Xiangrong Song, and Xuelei Ma
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Lymph node targeting ,mRNA vaccine ,EBV ,Nasopharyngeal carcinoma ,PD-1 ,Immunotherapy ,Biotechnology ,TP248.13-248.65 ,Medical technology ,R855-855.5 - Abstract
Abstract Background Targeting EBV-proteins with mRNA vaccines is a promising way to treat EBV-related tumors like nasopharyngeal carcinoma (NPC). We assume that it may sensitize tumors to immune checkpoint inhibitors. Results We developed an LMP2-mRNA lipid nanoparticle (C2@mLMP2) that can be delivered to tumor-draining lymph nodes. C2@mLMP2 exhibited high transfection efficiency and lysosomal escape ability and induced an increased proportion of CD8 + central memory T cells and CD8 + effective memory T cells in the spleen of the mice model. A strong synergistic anti-tumor effect of C2@mLMP2 in combination with αPD-1 was observed in tumor-bearing mice. The mechanism was identified to be associated with a reverse of CD8 + T cell exhaustion in the tumor microenvironment. The pathological analysis further proved the safety of the vaccine and the combined therapy. Conclusions This is the first study proving the synergistic effect of the EBV-mRNA vaccine and PD-1 inhibitors for EBV-related tumors. This study provides theoretical evidence for further clinical trials that may expand the application scenario and efficacy of immunotherapy in NPC. Graphical Abstract
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- 2023
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6. Optimization of Wheat Noodles with Compound Gels by Response Surface-Principal Component Analysis
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Lingling XU, Xiaojia JIAO, Yanhong CHEN, Hui NI, Jingxin LIN, Zedong JIANG, Yanbing ZHU, and Mingjing ZHENG
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enzymatic degraded konjac gum ,κ-carrageenan ,compound gelling agent ,noodles ,cooking properties ,texture ,sensory evaluation ,Food processing and manufacture ,TP368-456 - Abstract
In order to improve the quality of wheat noodles, the compounding gels were prepared by enzymatic hydrolysis of konjac gum and carrageenan to study its effects on quality of wheat noodle. The additions of compounding gels, salt and water were selected as single factors, and cooking, texture, and sensory properties were used as evaluation indexes to optimize the processing condition of wheat noodles by response surface and principal component analysis. The optimum formula determined as follows: based on 150 g of wheat flour as 100%, the compounding gel was 3%, salt was 1% and water was 43%. Under these conditions, the improved noodles had the best comprehensive quality, with a cooking yield of 64% and a cooking loss of 4.5%. Compared with the traditional wheat noodles, the cooking yield, hardness and chewiness of the improved noodles were increased by 3.8%, 18.6% and 2.1%, respectively, whereas the cooking loss and stickiness values decreased by 7.3% and 2.9%, respectively. The comprehensive quality of noodles was improved with sensory score increasing from 69.9 to 82.9. This study showed that enzymatic konjac gum and carrageenan compound gelling agent could be used as a noodle improver to enhance the quality of wheat noodles, and the results of the study provided a certain reference for the development of konjac gum and carrageenan compound gelling agent and its application research.
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- 2023
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7. Targeting lymph node delivery with nanovaccines for cancer immunotherapy: recent advances and future directions
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Yueyi Li, Shen Li, Zedong Jiang, Keqin Tan, Yuanling Meng, Dingyi Zhang, and Xuelei Ma
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Nanovaccines ,Lymph node ,Cancer ,Immunotherapy ,Delivery ,Biotechnology ,TP248.13-248.65 ,Medical technology ,R855-855.5 - Abstract
Abstract Although cancer immunotherapy is a compelling approach against cancer, its effectiveness is hindered by the challenge of generating a robust and durable immune response against metastatic cancer cells. Nanovaccines, specifically engineered to transport cancer antigens and immune-stimulating agents to the lymph nodes, hold promise in overcoming these limitations and eliciting a potent and sustained immune response against metastatic cancer cells. This manuscript provides an in-depth exploration of the lymphatic system’s background, emphasizing its role in immune surveillance and tumor metastasis. Furthermore, it delves into the design principles of nanovaccines and their unique capability to target lymph node metastasis. The primary objective of this review is to provide a comprehensive overview of the current advancements in nanovaccine design for targeting lymph node metastasis, while also discussing their potential to enhance cancer immunotherapy. By summarizing the state-of-the-art in nanovaccine development, this review aims to shed light on the promising prospects of harnessing nanotechnology to potentiate cancer immunotherapy and ultimately improve patient outcomes.
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- 2023
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8. Editorial: Biological macromolecules from marine organisms: isolation, characterization and pharmacological activities
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Bin Wang, Zhe-Sheng Chen, Zedong Jiang, and Zhongshan Zhang
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marine organisms ,macromolecules ,polysaccharides ,characterization ,bioactivity ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Published
- 2023
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9. Characterisation of marine bacterium Microbulbifer sp. ALW1 with Laminaria japonica degradation capability
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Zhipeng Li, Zeping Du, Hebin Li, Yanhong Chen, Mingjing Zheng, Zedong Jiang, Xiping Du, Hui Ni, and Yanbing Zhu
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Brown algae ,Polysaccharide degradation ,Microbulbifer ,Strain characteristics ,Complete genome sequence ,Biotechnology ,TP248.13-248.65 ,Microbiology ,QR1-502 - Abstract
Key points Microbulbifer sp. ALW1 has Laminaria japonica degradation capability. Genomic information of strain ALW1 is useful for analysing the polysaccharides degradation process. Microbulbifer sp. ALW1 could be potentially applied in producing functional materials.
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- 2022
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10. Corrigendum: In vivo total or partial hepatectomy followed by ex vivo liver resection and autotransplantation for malignant tumors: a single center experience
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Shaoyan Xu, Chenlu Hu, Zedong Jiang, Guogang Li, Bo Zhou, Zhenzhen Gao, Weilin Wang, and Sheng Yan
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in vivo total hepatectomy ,in vivo partial hepatectomy ,hepatic metastases ,autotransplantation ,biliary tract cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2023
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11. Effects of Refining on Konjac Glucomannan and Gel Properties of Its Blend with κ-Carrageenan
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Xiaojia JIAO, Kunxin DENG, Huiting WEI, Lingling XU, Yanbing ZHU, Kuncheng LIN, Zedong JIANG, Hui NI, Qingbiao LI, and Mingjing ZHENG
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konjac glucomannan ,purification ,κ-carrageenan ,structure ,properties ,Food processing and manufacture ,TP368-456 - Abstract
Refined conditions of konjac glucomannan (KGM), physicochemical properties and structural characterization of KGM before and after refining and its blend with κ-carrageenan were explored in this study. Furthermore, the correlation between physicochemical properties of KGM and gel properties of the blend was also determined. The result showed that refined conditions of KGM were as follows: Refined ethanol concentration 60%, swelling time 2 h, swelling temperature 50 ℃. With this treatment, the glucomannan content, viscosity, brightness and whiteness of KGM were increased by 34.43%, 128.55%, 17.94% and 28.29%, respectively. Gel strength, hardness, chewiness and gumminess of its blend with κ-carrageenan were significantly increased by 47.39%, 60.47%, 55.44%, and 45.87%(P < 0.05), respectively. The best gel properties of the blend were obtained with the enhanced hydrogen bond force, smoother and tighter gel network structure. In addition, physicochemical properties of KGM e.g. glucomannan content, viscosity, color and flavor were considered to be the key factors to improve quality of the blend gel. This study could provide an efficient and simple refined method for development of KGM and carrageenan blend with high gel strength, and lay a theoretical foundation for the industrial production of refined KGM in future.
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- 2022
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12. In vivo total or partial hepatectomy followed by ex vivo liver resection and autotransplantation for malignant tumors: a single center experience
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Shaoyan Xu, Chenlu Hu, Zedong Jiang, Guogang Li, Bo Zhou, Zhenzhen Gao, Weilin Wang, and Sheng Yan
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in vivo total hepatectomy ,in vivo partial hepatectomy ,hepatic metastases ,autotransplantation ,biliary tract cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundEx vivo liver resection and autotransplantation (ELRAT) may provide an opportunity for R0 resection of conventionally unresectable hepatobiliary cancers and hepatic metastases. To date, few studies of the surgery for malignant tumors have been conducted and there are no known reports of in vivo partial hepatectomy followed by ELRAT (IPH-ELRAT) for malignant tumors.MethodsBetween December 2021 and November 2022, ten patients with malignant hepatobiliary primary cancers or hepatic metastases underwent ELRAT at our institution. We shared the surgical skills and postoperative prognoses of these patients were assessed.ResultsThe types of tumors were biliary tract cancer (BTC, n=8), hepatic metastasis of colonic carcinoma (n=1), and hepatic metastasis of small-bowel stromal tumor (n=1). Five patients underwent in vivo total hepatectomy followed by ex vivo liver resection and autotransplantation (ITH-ELRAT), The other five received in vivo partial hepatectomy followed by ex vivo liver resection and autotransplantation (IPH-ELRAT). Four patients underwent inferior vena cava replacement using artificial blood vessels. The survival rate of all ten patients one month after surgery was 100%. Nine patients (90%) are currently alive, with a median follow-up of 8.5 months (range 6–16.5 months). To date, seven of the nine surviving patients have had no cancer recurrence, including six with BTC.ConclusionsWe report the world first five cases that received IPH-ELRAT for malignancies. We also demonstrated relatively favorable outcomes in patients who underwent ELRAT. ELRAT may be a recommendable surgical option for selected patients with conventionally unresectable hepatobiliary malignant tumors.
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- 2023
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13. Preparation of Fucoidan from Laminaria japonica by Ethanol-free Extraction Process
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Yanhong CHEN, Yuting DONG, Pengjie CHUAI, Shiqiaoxin CHEN, Zedong JIANG, Yanbing ZHU, Hui NI, Shanggui DENG, and Qingbiao LI
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laminaria japonica ,fucoidan ,ethanol-free extraction process ,antioxidation ,bacteriostasis ,Food processing and manufacture ,TP368-456 - Abstract
In this study, based on the traditional hot water extraction-ethanol precipitation method for fucoidan, the ethanol-free extraction process of kelp fucoidan was studied in accordance with the difference in the fucose contents and sulfate groups of fucoidans and their beneficial biological activities. Three extraction methods including hot water extraction-ethanol precipitation method, hot water extraction-acid precipitation method, and hot water extraction-acid precipitation-enzymatic hydrolysis assisted extraction method, were applied to prepare fucoidans, and three fucoidan samples (sample 1, sample 2 and sample 3) were obtained, respectively. Fucose and sulfuric acid group-contents and biological activities (antioxidant, antibacterial activities) analysis results showed that the contents of fucose and sulfate groups in fucoidan (sample 3) prepared by hot water extraction-acid precipitation-enzymatic assisted hydrolysis method were 41.10%±0.87% and 24.90%±0.15%, respectively, which were significantly higher than the Trade Standard requirements of fucoidan (SC/T 3404-2012), samples 1 and sample 2. Meanwhile, the sample 3 also had the best antioxidant and antibacterial activities in three fucoidan samples. The Response surface methodology (RSM) was used to optimize the key process conditions of hot water extraction-acid precipitation-enzymatic hydrolysis assisted extraction of fucoidan. The best extraction process parameters were obtained as follows: Extraction temperature was 90℃, extraction time was 2.0 h, liquid material ratio was 40:1 mL/g, and the extraction yield reached 9.65%±0.11%. In this study, raction rate of fucoidan and the biological activity of fucoidan prepared by hot water extraction-acid precipitation-enzymatic assisted hydrolysis method were significantly higher than those prepared by hot water extraction-ethanol precipitation method and hot water extraction-acid precipitation method, therefore, the hot water extraction-acid precipitation-enzymatic assisted hydrolysis method digestion would be a good process to effectively replace the hot water extraction-ethanol precipitation method for fucoidan extraction.
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- 2022
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14. A novel method of ultrasound-guided positive staining using indocyanine green fluorescence in laparoscopic anatomical liver resection of segments VII and VIII
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Zedong Jiang, Bo Zhou, Xiang Zheng, Guogang Li, Zhenzhen Gao, Yang Tian, Chunlong Shao, Shaoyan Xu, and Sheng Yan
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laparoscopic anatomical liver resection ,right superior segments ,ICG-positive staining ,novel method ,three-dimensional (3D) simulation ,laparoscopic ultrasound ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundRecently, in many Asian centers, laparoscopic anatomical liver resection (LALR) using the indocyanine green (ICG) fluorescence imaging technique has been increasingly applied in resecting hepatocellular carcinoma, even in colorectal liver metastases. However, LALR techniques have not been fully standardized, especially in right superior segments. Due to the anatomical position, prevailing positive staining using a PTCD (percutaneous transhepatic cholangial drainage) needle was superior to negative staining in right superior segments hepatectomy, while it was difficult to manipulate. Herein, we design a novel method of ICG-positive staining for LALR of right superior segments.MethodsBetween April 2021 and October 2022, we retrospectively studied patients in our institute who underwent LALR of right superior segments using a novel method of ICG-positive staining, which comprised a customized puncture needle and an adaptor. Compared to the PTCD needle, the customized needle was not limited by the abdominal wall and could be punctured from the liver dorsal surface, which was more flexible to manipulate. The adapter was attached to the guide hole of the laparoscopic ultrasound (LUS) probe to ensure the precise puncture path of the needle. Guided by preoperative three-dimensional (3D) simulation and intraoperative laparoscopic ultrasound imaging, we punctured the transhepatic needle into the target portal vein through the adaptor and then slowly injected 5-10 ml of 0.025 mg/ml ICG solution into the vessel. LALR can be guided by the demarcation line under fluorescence imaging after injection. Demographic, procedural and postoperative data were collected and analyzed.ResultsIn this study, 21 patients underwent LALR of the right superior segments with ICG fluorescence-positive staining, and the procedures had a success rate of 71.4%. The average staining time was 13.0 ± 6.4 min, the operative time was 230.4 ± 71.7 min, R0 resection was 100%, the postoperative hospital stay was 7.1 ± 2.4 days, and no severe puncture complications occurred.ConclusionsThe novel customized puncture needle approach seems to be feasible and safe for ICG-positive staining in LALR of right superior segments, with a high success rate and a short staining time.
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- 2023
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15. Dynamic regulatory networks of T cell trajectory dissect transcriptional control of T cell state transition
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Min Yan, Jing Hu, Huating Yuan, Liwen Xu, Gaoming Liao, Zedong Jiang, Jiali Zhu, Bo Pang, Yanyan Ping, Yunpeng Zhang, Yun Xiao, and Xia Li
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T cell dysfunction ,state transition trajectory ,dynamic regulatory network ,pseudo-times ,critical regulators ,Therapeutics. Pharmacology ,RM1-950 - Abstract
T cells exhibit heterogeneous functional states, which correlate with responsiveness to immune checkpoint blockade and prognosis of tumor patients. However, the molecular regulatory mechanisms underlying the dynamic process of T cell state transition remain largely unknown. Based on single-cell transcriptome data of T cells in non-small cell lung cancer, we combined cell states and pseudo-times to propose a pipeline to construct dynamic regulatory networks for dissecting the process of T cell dysfunction. Candidate regulators at different stages were revealed in the process of tumor-infiltrating T cell dysfunction. Through comparing dynamic networks across the T cell state transition, we revealed frequent regulatory interaction rewiring and further refined critical regulators mediating each state transition. Several known regulators were identified, including TCF7, EOMES, ID2, and TOX. Notably, one of the critical regulators, TSC22D3, was frequently identified in the state transitions from the intermediate state to the pre-dysfunction and dysfunction state, exerting diverse roles in each state transition by regulatory interaction rewiring. Moreover, higher expression of TSC22D3 was associated with the clinical outcome of tumor patients. Our study embedded transcription factors (TFs) within the temporal dynamic networks, providing a comprehensive view of dynamic regulatory mechanisms controlling the process of T cell state transition.
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- 2021
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16. Editorial: Application of biotechnology on the high-value development of marine bioresource
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Zedong Jiang, Haijin Mou, Yuya Kumagai, and Hideki Kishimura
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biotechnological application ,marine macromolecule ,astaxanthin ,cutinase ,volatile fingerprint ,Biotechnology ,TP248.13-248.65 - Published
- 2022
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17. Combined homologous recombination repair deficiency and immune activation analysis for predicting intensified responses of anthracycline, cyclophosphamide and taxane chemotherapy in triple-negative breast cancer
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Gaoming Liao, Zedong Jiang, Yiran Yang, Cong Zhang, Meiting Jiang, Jiali Zhu, Liwen Xu, Aimin Xie, Min Yan, Yunpeng Zhang, Yun Xiao, and Xia Li
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Triple-negative breast cancer ,ACT chemotherapy ,Homologous recombination repair deficiency ,Failure-free interval ,Immune checkpoint ,Medicine - Abstract
Abstract Background Triple-negative breast cancer (TNBC) is a clinically aggressive disease with abundant variants that cause homologous recombination repair deficiency (HRD). Whether TNBC patients with HRD are sensitive to anthracycline, cyclophosphamide and taxane (ACT), and whether the combination of HRD and tumour immunity can improve the recognition of ACT responders are still unknown. Methods Data from 83 TNBC patients in The Cancer Genome Atlas (TCGA) was used as a discovery cohort to analyse the association between HRD and ACT chemotherapy benefits. The combined effects of HRD and immune activation on ACT chemotherapy were explored at both the genome and the transcriptome levels. Independent cohorts from the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) and Gene Expression Omnibus (GEO) were adopted to validate our findings. Results HRD was associated with a longer ACT chemotherapy failure-free interval (FFI) with a hazard ratio of 0.16 (P = 0.004) and improved patient prognosis (P = 0.0063). By analysing both HRD status and ACT response, we identified patients with a distinct TNBC subtype (ACT-S&HR-P) that showed higher tumour lymphocyte infiltration, IFN-γ activity and NK cell levels. Patients with ACT-S&HR-P had significantly elevated immune inhibitor levels and presented immune activation associated with the increased activities of both innate immune cells and adaptive immune cells, which suggested treatment with immune checkpoint blockade as an option for this subtype. Our analysis revealed that the combination of HRD and immune activation enhanced the efficiency of identifying responders to ACT chemotherapy (AUC = 0.91, P = 1.06e−04) and synergistically contributed to the clinical benefits of TNBC patients. A transcriptional HRD signature of ACT response-related prognostic factors was identified and independently validated to be significantly associated with improved survival in the GEO cohort (P = 0.0038) and the METABRIC dataset (P < 0.0001). Conclusions These findings highlight that HR deficiency prolongs FFI and predicts intensified responses in TNBC patients by combining HRD and immune activation, which provides a molecular basis for identifying ACT responders.
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- 2021
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18. Single-Cell Transcriptomic Analysis Reveals the Crosstalk Propensity Between the Tumor Intermediate State and the CD8+ T Exhausted State to be Associated with Clinical Benefits in Melanoma
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Jiali Zhu, Min Yan, Haoteng Yan, Liwen Xu, Zedong Jiang, Gaoming Liao, Yao Zhou, Wei Liu, Xin Liang, Xia Li, Yun Xiao, and Yunpeng Zhang
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cell-cell communication ,cell state ,melanoma ,single-cell transcriptome analysis ,CD8+ T cell ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Heterogeneous crosstalk between tumor cells and CD8+ T cells leads to substantial variation in clinical benefits from immunotherapy in melanoma. Due to spatial distribution and functional state heterogeneity, it is still unknown whether there is a crosstalk propensity between tumor cells and CD8+ T cells in melanoma, and how this crosstalk propensity affects the clinical outcome of patients. Using public single-cell transcriptome data, extensive heterogeneous functional states and ligand–receptor interactions of tumor cells and CD8+ T cells were revealed in melanoma. Furthermore, based on the association between cell–cell communication intensity and cell state activity in a single cell, we identified a crosstalk propensity between the tumor intermediate state and the CD8+ T exhausted state. This crosstalk propensity was further verified by pseudo-spatial proximity, spatial co-location, and the intra/intercellular signal transduction network. At the sample level, the tumor intermediate state and the CD8+ T exhausted state synergistically indicated better prognosis and both reduced in immunotherapy-resistant samples. The risk groups defined based on these two cell states could comprehensively reflect tumor genomic mutations and anti-tumor immunity information. The low-risk group had a higher BRAF mutation fraction as well as stronger antitumor immune response. Our findings highlighted the crosstalk propensity between the tumor intermediate state and the CD8+ T exhausted state, which may serve as a reference to guide the development of diagnostic biomarkers for risk stratification and therapeutic targets for new therapeutic strategies.
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- 2022
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19. Applicability of Anticancer Drugs for the Triple-Negative Breast Cancer Based on Homologous Recombination Repair Deficiency
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Gaoming Liao, Yiran Yang, Aimin Xie, Zedong Jiang, Jianlong Liao, Min Yan, Yao Zhou, Jiali Zhu, Jing Hu, Yunpeng Zhang, Yun Xiao, and Xia Li
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triple-negative breast cancer (TNBC) ,homologous recombination repair deficiency (HRD) ,drug sensitivity ,pharmacogenomics ,connectivity map (CMap) ,Biology (General) ,QH301-705.5 - Abstract
Triple-negative breast cancer (TNBC) is a highly aggressive disease with historically poor outcomes, primarily due to the lack of effective targeted therapies. Here, we established a drug sensitivity prediction model based on the homologous recombination deficiency (HRD) using 83 TNBC patients from TCGA. Through analyzing the effect of HRD status on response efficacy of anticancer drugs and elucidating its related mechanisms of action, we found rucaparib (PARP inhibitor) and doxorubicin (anthracycline) sensitive in HR-deficient patients, while paclitaxel sensitive in the HR-proficient. Further, we identified a HRD signature based on gene expression data and constructed a transcriptomic HRD score, for analyzing the functional association between anticancer drug perturbation and HRD. The results revealed that CHIR99021 (GSK3 inhibitor) and doxorubicin have similar expression perturbation patterns with HRD, and talazoparib (PARP inhibitor) could kill tumor cells by reversing the HRD activity. Genomic characteristics indicated that doxorubicin inhibited tumor cells growth by hindering the process of DNA damage repair, while the resistance of cisplatin was related to the activation of angiogenesis and epithelial-mesenchymal transition. The negative correlation of HRD signature score could interpret the association of doxorubicin pIC50 with worse chemotherapy response and shorter survival of TNBC patients. In summary, these findings explain the applicability of anticancer drugs in TNBC and underscore the importance of HRD in promoting personalized treatment development.
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- 2022
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20. Effect of Black Tea Powder on Antioxidant Activity and Gel Characteristics of Silver Carp Fish Balls
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Jinling Hong, Jiaying Wu, Yanhong Chen, Zedong Jiang, Yanbing Zhu, Zhipeng Li, Xianmu Chen, Hui Ni, and Mingjing Zheng
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black tea powder ,fish balls ,antioxidant activity ,gel characteristics ,Science ,Chemistry ,QD1-999 ,Inorganic chemistry ,QD146-197 ,General. Including alchemy ,QD1-65 - Abstract
The effect of black tea powder on the antioxidant activity and gel characteristics of fish balls from silver carp were investigated after freezing storage for 7 days. The results show that black tea powder with different concentrations of 0.1%, 0.2% and 0.3% (w/w) could significantly increase the antioxidant activity of fish balls (p < 0.05). In particular, at the concentration of 0.3%, the antioxidant activity was the strongest among these samples, where the reducing power, DPPH, ABTS and OH free radical scavenging rate were up to 0.33, 57.93%, 89.24% and 50.64%, respectively. In addition, black tea powder at the level of 0.3% significantly increased the gel strength, hardness and chewiness while greatly reducing the whiteness of the fish balls (p < 0.05). ESEM observation found that the addition of black tea powder could promote the crosslinking of proteins and reduced the pore size of the gel network structure of the fish balls. The results suggest that black tea powder could be used as a natural antioxidant and gel texture enhancer in fish balls, which we found to be much related to the phenolic compounds of black tea powder.
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- 2023
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21. A Combination of Biomarkers Predict Response to Immune Checkpoint Blockade Therapy in Non-Small Cell Lung Cancer
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Zedong Jiang, Yao Zhou, and Juan Huang
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immune checkpoint blockade ,immunotherapy ,biomarker ,biomarker combinations ,non-small-cell lung cancer ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Immune checkpoint blockade (ICB) therapy has provided clinical benefits for patients with advanced non-small-cell lung cancer (NSCLC), but the majority still do not respond. Although a few biomarkers of ICB treatment response have been developed, the predictive power of these biomarkers showed substantial variation across datasets. Therefore, predicting response to ICB therapy remains a challenge. Here, we provided a concise combinatorial strategy for predicting ICB therapy response and constructed the ICB treatment signature (ITS) in lung cancer. The prediction performance of ITS has been validated in an independent ICB treatment cohort of NSCLC, where patients with higher ITS score were significantly associated with longer progression-free survival and better response. And ITS score was more powerful than traditional biomarkers, such as TMB and PD-L1, in predicting the ICB treatment response in NSCLC. In addition, ITS scores still had predictive effects in other cancer data sets, showing strong scalability and robustness. Further research showed that a high ITS score represented comprehensive immune activation characteristics including activated immune cell infiltration, increased mutation load, and TCR diversity. In conclusion, our practice suggested that the combination of biomarkers will lead to a better prediction of ICB treatment prognosis, and the ITS score will provide NSCLC patients with better ICB treatment decisions.
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- 2021
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22. Single-Cell Transcriptomic Analysis Reveals a Tumor-Reactive T Cell Signature Associated With Clinical Outcome and Immunotherapy Response In Melanoma
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Min Yan, Jing Hu, Yanyan Ping, Liwen Xu, Gaoming Liao, Zedong Jiang, Bo Pang, Shangqin Sun, Yunpeng Zhang, Yun Xiao, and Xia Li
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tumor reactivity ,tumor-infiltrating T cells ,immunotherapy ,exhausted T cells ,melanoma ,Immunologic diseases. Allergy ,RC581-607 - Abstract
The infiltration of tumor-reactive T cells in the tumor site is associated with better survival and immunotherapy response. However, tumor-reactive T cells were often represented by the infiltration of total CD8+ T cells, which was confounded by the presence of bystander T cells. To identify tumor-reactive T cells at the cancer lesion, we performed integration analyses of three scRNA-seq data sets of T cells in melanoma. Extensive heterogeneous functional states of T cells were revealed in the tumor microenvironment. Among these states, we identified a subset of tumor-reactive T cells which specifically expressed tumor-reactive markers and T cell activation signature, and were strongly enriched for larger T cell receptor (TCR) clones. We further identified and validated a tumor-reactive T cell signature (TRS) to evaluate the tumor reactivity of T cells in tumor patients. Patients with high TRS scores have strong immune activity and high mutation burden in the TCGA-SKCM cohort. We also demonstrated a significant association of the TRS with the clinical outcomes of melanoma patients, with higher TRS scores representing better survival, which was validated in four external independent cohorts. Furthermore, the TRS scores exhibited greater performance on prognosis prediction than infiltration levels of CD8+ T cells and previously published prognosis-related signatures. Finally, we observed the capability of TRS to predict immunotherapy response in melanoma. Together, based on integrated analysis of single-cell RNA-sequencing, we developed and validated a tumor-reactive-related signature that demonstrated significant association with clinical outcomes and response to immunotherapy.
- Published
- 2021
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23. Analysis of Mutations and Dysregulated Pathways Unravels Carcinogenic Effect and Clinical Actionability of Mutational Processes
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Zedong Jiang, Gaoming Liao, Yiran Yang, Yujia Lan, Liwen Xu, Min Yan, Yao Zhou, Jiali Zhu, Wei Liu, Jing Bai, Yun Xiao, and Xia Li
- Subjects
mutational process ,mutational signature ,mutation ,homologous recombination proficient ,APOBEC mutational signature ,Biology (General) ,QH301-705.5 - Abstract
Somatic mutations accumulate over time in cancer cells as a consequence of mutational processes. However, the role of mutational processes in carcinogenesis remains poorly understood. Here, we infer the causal relationship between mutational processes and somatic mutations in 5,828 samples spanning 34 cancer subtypes. We found most mutational processes cause abundant recurrent mutations in cancer genes, while exceptionally ultraviolet exposure and altered activity of the error-prone polymerase bring a large number of recurrent non-driver mutations. Furthermore, some mutations are specifically induced by a certain mutational process, such as IDH1 p.R132H which is mainly caused by spontaneous deamination of 5-methylcytosine. At the pathway level, clock-like mutational processes extensively trigger mutations to dysregulate cancer signal transduction pathways. In addition, APOBEC mutational process destroys DNA double-strand break repair pathway, and bladder cancer patients with high APOBEC activity, though with homologous recombination proficient, show a significantly longer overall survival with platinum regimens. These findings help to understand how mutational processes act on the genome to promote carcinogenesis, and further, presents novel insights for cancer prevention and treatment, as our results showing, APOBEC mutagenesis and HRD synergistically contributed to the clinical benefits of platinum-based treatment.
- Published
- 2021
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24. Hypoglycaemic effect of all-trans astaxanthin through inhibiting α-glucosidase
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Xiping Du, Xin Wang, Xing Yan, Yuanfan Yang, Zhipeng Li, Zedong Jiang, and Hui Ni
- Subjects
All-trans astaxanthin ,α-glucosidase ,Hypoglycaemic effect ,Docking simulation ,Type 2 diabetes ,Nutrition. Foods and food supply ,TX341-641 - Abstract
The hypoglycaemic effect of all-trans astaxanthin is long known for its antioxidation for type 2 diabetes, a global health concern. To reduce glycaemic index of type 2 diabetes, inhibition of key enzymes is an efficient approach, for example to inhibit α-glucosidase. Conventional chemical or synthetic enzyme-inhibitors have adverse side effects. Therefore, we studied the inhibition of α-glucosidase by all-trans astaxanthin. To inhibit α-glucosidase, the half maximal inhibitory concentration (IC50) of all-trans astaxanthin was 67.95 ± 0.03 μmol/L. All-trans astaxanthin inhibited α-glucosidase as a competitive inhibitor, as shown by kinetic analysis. All-trans astaxanthin could induce the changes of the secondary structure to reduce α-glucosidase activity. Molecular-docking analysis reveals that all-trans astaxanthin prevented substrate from binding to α-glucosidase by occupying the space of the active pocket to cause the inhibition. Our findings suggest that all-trans astaxanthin has the hypoglycaemic effect through inhibiting α-glucosidase, in addition to its antioxidation effect reported earlier.
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- 2020
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25. Macrophage-stimulating activities of a novel low molecular weight saccharide fragment prepared from ascophyllan with alginate lyase
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Zedong Jiang, Gang Yu, Qingyun Bao, Xu Xu, Yanbing Zhu, Hui Ni, Qingbiao Li, and Tatsuya Oda
- Subjects
Ascophyllum nodosum ,Ascophyllan ,Low-molecular-weight saccharide ,Structural characteristic ,Macrophage-stimulating activity ,Intracellular signal pathway ,Nutrition. Foods and food supply ,TX341-641 - Abstract
In this study, the polysaccharide ascophyllan, isolated from Ascophyllum nodosum, was degraded using alginate lyase (EC 4.2.2.3) to prepare low-molecular-weight fragments. LMWAs-L, an extremely low-molecular-weight saccharide (6.71 kDa) with low fucose- and sulphate-contents, was purified by gel filtration chromatography. LMWAs-L exhibited significant macrophage-stimulating activities, similar to ascophyllan, through intracellular signalling pathways. Methylation and GC/MS analyses indicated that the main glycosidic linkages of LMWAs-L were 1,2-linked-GlcpA, followed by T-linked-Glcp, 1,3,6-linked-Galp, 1,3-linked-Fucp, 1,4-linked-Xylp, and 1,4-linked-ManpA at a molar ratio of 3.37: 1.13: 1.11: 1.00: 0.96: 0.61. The proposal repeating structure of LMWAs-L was shown to be →2)-α-D-GlcpA-(1 → 2)-α-D-GlcpA-(1 → 6)-α-D-Galp-(1 → 2)-α-D-GlcpA-(1→ as main chain, branched by T-α-D-Glcp-(1 → 4)-β-D-Xylp-(1 → 3)-α-L-Fucp4S-(1→ at the O-3 of 3,6)-α-D-Galp-(1→ residues. 4-deoxy-L-erythro-hex-4-enuronosyluronate-4-β-D-ManpA-(1→ and →4)-β-D-ManpAred residues were attached to the ends of main chain as non-reducing end residue and reducing end residue, respectively. Our results suggest that the fragment LMWAs-L contain an essential structural element of ascophyllan that is responsible for the macrophage-stimulating activities.
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- 2020
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26. Simultaneous Inhibitory Effects of All-Trans Astaxanthin on Acetylcholinesterase and Oxidative Stress
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Xin Wang, Tao Zhang, Xiaochen Chen, Yating Xu, Zhipeng Li, Yuanfan Yang, Xiping Du, Zedong Jiang, and Hui Ni
- Subjects
Alzheimer´s disease ,acetylcholinesterase ,all-trans astaxanthin ,oxidative stress ,Biology (General) ,QH301-705.5 - Abstract
Alzheimer´s disease is a global neurodegenerative health concern. To prevent the disease, the simultaneous inhibition of acetylcholinesterase and oxidative stress is an efficient approach. In this study, the inhibition effect of all-trans astaxanthin mainly from marine organisms on acetylcholinesterase and oxidative stress was evaluated by a chemical-based method in vitro and cell assay model. The results show that all-trans astaxanthin was a reversible competitive inhibitor and exhibited a strong inhibition effect with half inhibitory concentration (IC50 value) of 8.64 μmol/L. Furthermore, all-trans astaxanthin inhibited oxidative stress through reducing malondialdehyde content and increasing the activity of superoxide dismutase as well as catalase. All-trans astaxanthin could induce the changes of the secondary structure to reduce acetylcholinesterase activity. Molecular-docking analysis reveals that all-trans astaxanthin prevented substrate from binding to acetylcholinesterase by occupying the space of the active pocket to cause the inhibition. Our finding suggests that all-trans astaxanthin might be a nutraceutical supplement for Alzheimer´s disease prevention.
- Published
- 2022
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27. Inhibitory effect of astaxanthin on pancreatic lipase with inhibition kinetics integrating molecular docking simulation
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Xiping Du, Manli Bai, Ying Huang, Zedong Jiang, Feng Chen, Hui Ni, and Qingbiao Li
- Subjects
Astaxanthin ,Pancreatic lipase ,Inhibitory effect ,Kinetics ,Molecular interaction ,Docking simulation ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Astaxanthin is a natural pigment that possesses benefit potentials to prevent obesity, however, its underlying mechanism is not clarified. In the current study, Phaffia rhodozyma astaxanthin was prepared and its inhibitory effect on pancreatic lipase was evaluated. The results showed that astaxanthin significantly inhibited the activity of pancreatic lipase in a dose-dependent manner within the tested concentration ranges. The kinetic analysis demonstrated that astaxanthin noncompetitively inhibited pancreatic lipase activity. In addition, astaxanthin induced secondary structure changes which resulted in decreased enzyme activities. Furthermore, the molecular docking analysis revealed that astaxanthin blocked the channel of catalytic site to delay substrate entrance or prevent product diffusion through changing the catalytic site conformation. These findings not only shed light on the underlying inhibitory mechanism of astaxanthin on pancreatic lipase, but also provide scientific evidence for extending the application of astaxanthin in functional food industries.
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- 2018
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28. Ascophyllan Purified from Ascophyllum nodosum Induces Th1 and Tc1 Immune Responses by Promoting Dendritic Cell Maturation
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Wei Zhang, Jiang-Yuan Du, Zedong Jiang, Takasi Okimura, Tatsuya Oda, Qing Yu, and Jun-O Jin
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ascophyllan ,dendritic cells ,DC maturation ,Th1 cells ,Tc1 cells ,Biology (General) ,QH301-705.5 - Abstract
Marine-derived sulfated polysaccharides have been shown to possess certain anti-virus, anti-tumor, anti-inflammatory and anti-coagulant activities. However, the in vivo immunomodulatory effects of marine-derived pure compounds have been less well characterized. In this study, we investigated the effect of ascophyllan, a sulfated polysaccharide purified from Ascophyllum nodosum, on the maturation of mouse dendritic cells (DCs) in vitro and in vivo. Ascophyllan induced up-regulation of co-stimulatory molecules and production of pro-inflammatory cytokines in bone marrow-derived DCs (BMDCs). Moreover, in vivo administration of ascophyllan promotes up-regulation of CD40, CD80, CD86, MHC class I and MHC class II and production of IL-6, IL-12 and TNF-α in spleen cDCs. Interestingly, ascophyllan induced a higher degree of co-stimulatory molecule up-regulation and pro-inflammatory cytokine production than fucoidan, a marine-derived polysaccharide with well-defined effect for promoting DC maturation. Ascophyllan also promoted the generation of IFN-γ-producing Th1 and Tc1 cells in the presence of DCs in an IL-12-dependent manner. Finally, myeloid differentiation primary response 88 (MyD88) signaling pathway was essential for DC maturation induced by ascophyllan. Taken together, these results demonstrate that ascophyllan induces DC maturation, and consequently enhances Th1 and Tc1 responses in vivo. This knowledge could facilitate the development of novel therapeutic strategies to combat infectious diseases and cancer.
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- 2014
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29. Revealing the contribution of somatic gene mutations to shaping tumor immune microenvironment.
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Liwen Xu, Shiwei Zhu, Yujia Lan, Min Yan, Zedong Jiang, Jiali Zhu, Gaoming Liao, Yanyan Ping, Jinyuan Xu, Bo Pang, Yunpeng Zhang, Yun Xiao 0001, and Xia Li 0004
- Published
- 2022
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30. Exploring the dynamic and multifaceted effects of globalization on renewable energy sources through advanced nonparametric modeling techniques
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Yungui Yao, Mohammad Maruf Hasan, and Zedong Jiang
- Subjects
Health, Toxicology and Mutagenesis ,Environmental Chemistry ,General Medicine ,Pollution - Published
- 2023
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31. In vitro fermentation of seaweed polysaccharides and tea polyphenol blends by human intestinal flora and their effects on intestinal inflammation
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Shiqi Shen, Wenqin Yang, Lijun Li, Yanbing Zhu, Yuanfan Yang, Hui Ni, Zedong Jiang, and Mingjing Zheng
- Subjects
General Medicine ,Food Science - Abstract
The combination of different seaweed polysaccharides and tea polyphenols had different regulatory effects on the intestinal flora and intestinal inflammation.
- Published
- 2023
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32. In vitro fermentation of Bangia fusco-purpurea polysaccharide by human gut microbiota and the protective effects of the resultant products on Caco-2 cells from lipopolysaccharide-induced injury
- Author
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Mingjing, Zheng, Yajun, Zheng, Yifei, Zhang, Yanbing, Zhu, Yuanfan, Yang, Tatsuya, Oda, Hui, Ni, and Zedong, Jiang
- Subjects
Lipopolysaccharides ,Polysaccharides ,Structural Biology ,Fermentation ,Rhodophyta ,Humans ,General Medicine ,Caco-2 Cells ,Fatty Acids, Volatile ,Arginine ,Molecular Biology ,Biochemistry ,Gastrointestinal Microbiome - Abstract
Polysaccharide extracted from red seaweed Bangia fusco-purpurea (BFP) is a novel sulfated galactan, differed from agarans and carrageenans in fine structure. In this study, in vitro fermentation characteristics of BFP by human gut microbiota and its protective effect on lipopolysaccharide (LPS)-induced injury in Caco-2 cells were investigated. Our results showed that BFP was mainly degraded at transverse colon for 18 h fermentation by gut microbiota with reduced molecular weight. Meanwhile, BFP fermentation was associated with increased short-chain fatty acids (SCFAs) as compared to control group, especially acetic acid was increased to 129.53 ± 0.24 from 82.14 ± 0.23 mmol/L, and butyric acid was up to 1.56 ± 0.004 from 0.62 ± 0.01 mmol/L. Furthermore, BFP promoted abundances of Bacteroidetes and Firmicutes, while decreased numbers of Proteobacteria. The up-regrated beneficial differential metabolites were SCFAs, L-proline, arginine, folic acid, pyridoxamine, thiamine, etc. (p 0.05), and their related metabolic pathways mainly included mTOR, arginine biosynthesis, and vitamin metabolism. Notably, BFP fermentation products at transverse colon significantly restored cell viability of LPS-treated Caco-2 cells from 73.79 ± 0.48 % to 93.79-99.64 %, which might be caused by increased beneficial differential metabolites (e.g., SCFAs). Our findings suggest that BFP has prebiotic potential and can enhance gut health.
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- 2022
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33. Metabolomics of astaxanthin biosynthesis and corresponding regulation strategies in Phaffia rhodozyma
- Author
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Haoyi Yang, Liang Yang, Xiping Du, Ning He, Zedong Jiang, Yanbing Zhu, Lijun Li, Hui Ni, Qingbiao Li, and Zhipeng Li
- Subjects
Genetics ,Bioengineering ,Applied Microbiology and Biotechnology ,Biochemistry ,Biotechnology - Published
- 2023
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34. The role of key genes in astaxanthin biosynthesis in Phaffia rhodozyma by transcript level and gene knockout
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Zhipeng Li, Lina Chen, Haoyi Yang, Tianli Li, Xiping Du, Ning He, Zedong Jiang, Lijun Li, and Hui Ni
- Subjects
Bioengineering ,Applied Microbiology and Biotechnology ,Biochemistry - Published
- 2022
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- View/download PDF
35. Effect of Porphyra Haitanensis Polyphenols from Different Harvest Periods on Hypoglycaemic Activity Based on in Vitro Digestion and Widely Targeted Metabolomic Analysis
- Author
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Xiaochen Chen, Yating Xu, Xiping Du, Zhipeng Li, Yuanfan Yang, Zedong Jiang, Hui Ni, and Qingbiao Li
- Published
- 2023
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36. Dynamic regulatory networks of T cell trajectory dissect transcriptional control of T cell state transition
- Author
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Gaoming Liao, Jing Hu, Liwen Xu, Zedong Jiang, Yunpeng Zhang, Xia Li, Huating Yuan, Jiali Zhu, Yanyan Ping, Min Yan, Yun Xiao, and Bo Pang
- Subjects
state transition trajectory ,Transition (genetics) ,T cell ,critical regulators ,Cell ,RM1-950 ,Biology ,Immune checkpoint ,pseudo-times ,Transcriptome ,medicine.anatomical_structure ,Drug Discovery ,medicine ,Transcriptional regulation ,dynamic regulatory network ,Molecular Medicine ,Original Article ,T cell dysfunction ,Non small cell ,Therapeutics. Pharmacology ,Neuroscience ,Transcription factor - Abstract
T cells exhibit heterogeneous functional states, which correlate with responsiveness to immune checkpoint blockade and prognosis of tumor patients. However, the molecular regulatory mechanisms underlying the dynamic process of T cell state transition remain largely unknown. Based on single-cell transcriptome data of T cells in non-small cell lung cancer, we combined cell states and pseudo-times to propose a pipeline to construct dynamic regulatory networks for dissecting the process of T cell dysfunction. Candidate regulators at different stages were revealed in the process of tumor-infiltrating T cell dysfunction. Through comparing dynamic networks across the T cell state transition, we revealed frequent regulatory interaction rewiring and further refined critical regulators mediating each state transition. Several known regulators were identified, including TCF7, EOMES, ID2, and TOX. Notably, one of the critical regulators, TSC22D3, was frequently identified in the state transitions from the intermediate state to the pre-dysfunction and dysfunction state, exerting diverse roles in each state transition by regulatory interaction rewiring. Moreover, higher expression of TSC22D3 was associated with the clinical outcome of tumor patients. Our study embedded transcription factors (TFs) within the temporal dynamic networks, providing a comprehensive view of dynamic regulatory mechanisms controlling the process of T cell state transition., Graphical abstract, Antigen recognition in the tumor microenvironment drives T cell dysfunction, which is governed by a complex regulatory network. We constructed dynamic regulatory networks and identified critical regulators during state transition processes along T cell dysfunction. TSC22D3 was frequently identified in different state transition stages, and it exhibited prognostic significance for NSCLC patients.
- Published
- 2021
37. Structural characterization and antioxidant activity of polysaccharides extracted from Porphyra haitanensis by different methods
- Author
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Mingjing Zheng, Menghan Ma, Yuanfan Yang, Zhiyu Liu, Shuji Liu, Tao Hong, Hui Ni, and Zedong Jiang
- Subjects
Structural Biology ,General Medicine ,Molecular Biology ,Biochemistry - Published
- 2023
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38. Combined homologous recombination repair deficiency and immune activation analysis for predicting intensified responses of anthracycline, cyclophosphamide and taxane chemotherapy in triple-negative breast cancer
- Author
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Yunpeng Zhang, Zedong Jiang, Xia Li, Jiali Zhu, Gaoming Liao, Cong Zhang, Meiting Jiang, Aimin Xie, Liwen Xu, Min Yan, Yun Xiao, and Yiran Yang
- Subjects
Oncology ,medicine.medical_specialty ,Failure-free interval ,Cyclophosphamide ,Anthracycline ,ACT chemotherapy ,medicine.medical_treatment ,Triple Negative Breast Neoplasms ,Immune system ,Breast cancer ,Triple-negative breast cancer ,Internal medicine ,medicine ,Humans ,Anthracyclines ,Chemotherapy ,Taxane ,business.industry ,Recombinational DNA Repair ,General Medicine ,medicine.disease ,Immune checkpoint ,Medicine ,Taxoids ,Homologous recombination repair deficiency ,business ,Research Article ,medicine.drug - Abstract
Background Triple-negative breast cancer (TNBC) is a clinically aggressive disease with abundant variants that cause homologous recombination repair deficiency (HRD). Whether TNBC patients with HRD are sensitive to anthracycline, cyclophosphamide and taxane (ACT), and whether the combination of HRD and tumour immunity can improve the recognition of ACT responders are still unknown. Methods Data from 83 TNBC patients in The Cancer Genome Atlas (TCGA) was used as a discovery cohort to analyse the association between HRD and ACT chemotherapy benefits. The combined effects of HRD and immune activation on ACT chemotherapy were explored at both the genome and the transcriptome levels. Independent cohorts from the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) and Gene Expression Omnibus (GEO) were adopted to validate our findings. Results HRD was associated with a longer ACT chemotherapy failure-free interval (FFI) with a hazard ratio of 0.16 (P = 0.004) and improved patient prognosis (P = 0.0063). By analysing both HRD status and ACT response, we identified patients with a distinct TNBC subtype (ACT-S&HR-P) that showed higher tumour lymphocyte infiltration, IFN-γ activity and NK cell levels. Patients with ACT-S&HR-P had significantly elevated immune inhibitor levels and presented immune activation associated with the increased activities of both innate immune cells and adaptive immune cells, which suggested treatment with immune checkpoint blockade as an option for this subtype. Our analysis revealed that the combination of HRD and immune activation enhanced the efficiency of identifying responders to ACT chemotherapy (AUC = 0.91, P = 1.06e−04) and synergistically contributed to the clinical benefits of TNBC patients. A transcriptional HRD signature of ACT response-related prognostic factors was identified and independently validated to be significantly associated with improved survival in the GEO cohort (P = 0.0038) and the METABRIC dataset (P < 0.0001). Conclusions These findings highlight that HR deficiency prolongs FFI and predicts intensified responses in TNBC patients by combining HRD and immune activation, which provides a molecular basis for identifying ACT responders.
- Published
- 2021
39. Preparation of immobilized arylsulfatase on magnetic Fe 3 O 4 nanoparticles and its application for agar quality improvement
- Author
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Qingbiao Li, Mingjing Zheng, Hebin Li, Hui Ni, Yanbing Zhu, Zedong Jiang, and Chenghao Zhang
- Subjects
arylsulfatase ,food.ingredient ,biology ,Immobilized enzyme ,Nutrition. Foods and food supply ,Chemistry ,magnetic nanoparticle ,Arylsulfatases ,tannic acid ,Hydrolysis ,chemistry.chemical_compound ,food ,agar desulfation ,Tannic acid ,biology.protein ,Surface modification ,Agar ,TX341-641 ,Fourier transform infrared spectroscopy ,Arylsulfatase ,immobilized enzyme ,Food Science ,Nuclear chemistry - Abstract
The presence of sulfate groups in agar compromises the agar quality by affecting the crosslinking during gelling process. Some arylsulfatases can catalyze the hydrolysis of sulfate bonds in agar to improve the agar quality. Immobilized arylsulfatases prove beneficial advantages for their industrial applications. Here, a previously characterized mutant arylsulfatase K253H/H260L was immobilized on the synthesized magnetic Fe3O4 nanoparticles after functionalization by tannic acid (MNPs@TA). The surface properties and molecular structures of the immobilized arylsulfatase (MNPs@TA@ARS) were examined by scanning electron microscopy and Fourier transform infrared spectroscopy. Enzymatic characterization showed that MNPs@TA@ARS exhibited shifted optimal temperature and pH with deviated apparent Km and Vmax compared to its free counterpart. The immobilized arylsulfatase demonstrated improved thermal and pH stability and enhanced storage stability with modest reusability. In addition, MNPs@TA@ARS displayed enhanced tolerance to various inhibitors and detergents. The utilization of the immobilized arylsulfatase for agar desulfation brought the treated agar with improved quality.
- Published
- 2021
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40. Characterization of the inhibition of aldose reductase with p ‐coumaric acid ethyl ester
- Author
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Yuanfan Yang, Junzhu He, Zedong Jiang, Xiping Du, Feng Chen, Jinling Wang, and Hui Ni
- Subjects
Diabetes Complications ,Pharmacology ,Coumaric Acids ,Aldehyde Reductase ,Biophysics ,Humans ,Esters ,Cell Biology ,Enzyme Inhibitors ,Food Science - Abstract
The inhibition of aldose reductase is an effective strategy to alleviate symptoms of diabetic complications. The p-coumaric acid ethyl ester (p-CAEE) was taken as an example to investigate the inhibition of aldose reductase from p-coumaric acid derivations. The results showed p-CAEE strongly inhibited aldose reductase with the half inhibitory concentration of 1.92 μM, following the noncompetitive manner with a K
- Published
- 2022
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41. Characterisation of a novel laminarinase from Microbulbifer sp. ALW1 and the antioxidant activity of its hydrolysates
- Author
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Hebin Li, Hui Ni, Xinghua Wang, Qingbiao Li, Xiaoqian Yin, Lijun Li, Zedong Jiang, Yanbing Zhu, and Qingsong Hu
- Subjects
Antioxidant ,Chemistry ,medicine.medical_treatment ,medicine ,Food science ,Industrial and Manufacturing Engineering ,Hydrolysate ,Microbulbifer sp ,Food Science - Published
- 2021
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42. Simultaneous enhancement of thermostability and catalytic activity of κ-carrageenase from Pseudoalteromonas tetraodonis by rational design
- Author
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Tao Hong, Liufei Long, Yuyan Sang, Zedong Jiang, Hui Ni, Mingjing Zheng, Lijun Li, Qingbiao Li, and Yanbing Zhu
- Subjects
Bioengineering ,Applied Microbiology and Biotechnology ,Biochemistry ,Biotechnology - Published
- 2023
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43. High-pressure homogenization treatment of red seaweed Bangia fusco-purpurea affects the physicochemical, functional properties and enhances in vitro anti-glycation activity of its dietary fibers
- Author
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Qingzhi Huang, Tao Hong, Mingjing Zheng, Yuanfan Yang, Yanbing Zhu, Zedong Jiang, Hui Ni, and Qingbiao Li
- Subjects
General Chemistry ,Industrial and Manufacturing Engineering ,Food Science - Published
- 2023
- Full Text
- View/download PDF
44. Lactobacillus-fermentation enhances nutritional value and improves the inhibition on pancreatic lipase and oral pathogens of edible red seaweed Bangia fusco-purpurea
- Author
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Zhipeng Li, Yuting Dong, Yifei Zhang, Mingjing Zheng, Zedong Jiang, Yanbing Zhu, Shanggui Deng, Qingbiao Li, and Hui Ni
- Subjects
Food Science - Published
- 2023
- Full Text
- View/download PDF
45. Effect of ultra-high pressure treatment on structural and functional properties of dietary fiber from pomelo fruitlets
- Author
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Huan Ouyang, Baoli Guo, Yang Hu, Lijun Li, Zedong Jiang, Qingbiao Li, Hui Ni, Zhipeng Li, and Mingjing Zheng
- Subjects
Biochemistry ,Food Science - Published
- 2023
- Full Text
- View/download PDF
46. Characterization of a bifunctional and endolytic alginate lyase from Microbulbifer sp. ALW1 and its application in alginate oligosaccharides production from Laminaria japonica
- Author
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Hebin Li, Xiaoyi Huang, Shuxiang Yao, Chenghao Zhang, Xuan Hong, Ting Wu, Zedong Jiang, Hui Ni, and Yanbing Zhu
- Subjects
Alginates ,Octoxynol ,Alteromonadaceae ,Temperature ,Oligosaccharides ,Polysorbates ,Hydrogen-Ion Concentration ,Antioxidants ,Substrate Specificity ,Surface-Active Agents ,Bacterial Proteins ,Escherichia coli ,Amino Acids ,Laminaria ,Biotechnology ,Polysaccharide-Lyases - Abstract
The diverse biological activities of alginate oligosaccharides attracted extensive exploration of alginate lyases with various substrate specificity and enzymatic properties. In this study, an alginate lyase from Microbulbifer sp. ALW1, namely AlgL7, was phylogenetically classified into the polysaccharide lyase family 7 (PL7). The conserved amino acid residues Tyr606 and His499 in AlgL7 were predicted to act as the general acid/base catalysts. The enzyme was enzymatically characterized after heterologous expression and purification in E. coli. AlgL7 displayed optimal activity at 40 °C and pH 7.0. It had good stability at temperature below 35 °C and within a pH range of 5.0-10.0. AlgL7 exhibited good stability against the reducing reagent β-ME and the surfactants of Tween-20 and Triton X-100. The degradation profiles of alginate indicated AlgL7 was a bifunctional endolytic alginate lyase generating alginate oligosaccharides with the degrees of polymerization 2-4. The degradation products of sodium alginate exhibited stronger antioxidant activities than the untreated polysaccharide. In addition, AlgL7 could directly digest Laminaria japonica to produce alginate oligosaccharides. These characteristics of AlgL7 offer a great potential of its application in high-value utilization of brown algae resources.
- Published
- 2022
47. Characterization of a Thermostable and Surfactant-Tolerant Chondroitinase B from a Marine Bacterium Microbulbifer sp. ALW1
- Author
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Mingjing Mou, Qingsong Hu, Hebin Li, Liufei Long, Zhipeng Li, Xiping Du, Zedong Jiang, Hui Ni, and Yanbing Zhu
- Subjects
Inorganic Chemistry ,Organic Chemistry ,General Medicine ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy ,Catalysis ,Computer Science Applications ,chondroitinase B ,Microbulbifer sp ,thermostable ,surfactant-tolerant - Abstract
Chondroitinase plays an important role in structural and functional studies of chondroitin sulfate (CS). In this study, a new member of chondroitinase B of PL6 family, namely ChSase B6, was cloned from marine bacterium Microbulbifer sp. ALW1 and subjected to enzymatic and structural characterization. The recombinant ChSase B6 showed optimum activity at 40 °C and pH 8.0, with enzyme kinetic parameters of Km and Vmax against chondroitin sulfate B (CSB) to be 7.85 µg/mL and 1.21 U/mg, respectively. ChSase B6 demonstrated thermostability under 60 °C for 2 h with about 50% residual activity and good pH stability under 4.0–10.0 for 1 h with above 60% residual activity. In addition, ChSase B6 displayed excellent stability against the surfactants including Tween-20, Tween-80, Trion X-100, and CTAB. The degradation products of ChSase B6-treated CSB exhibited improved antioxidant ability as a hydroxyl radical scavenger. Structural analysis and site-directed mutagenesis suggested that the conserved residues Lys248 and Arg269 were important for the activity of ChSase B6. Characterization, structure, and molecular dynamics simulation of ChSase B6 provided a guide for further tailoring for its industrial application for chondroitin sulfate bioresource development.
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- 2022
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48. Tyrosinase inhibition by p ‐coumaric acid ethyl ester identified from camellia pollen
- Author
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Du Xiping, Zedong Jiang, Feng Chen, Sun Xu, Hui Ni, Lijun Li, Yuchen Cai, and Yuanfan Yang
- Subjects
Conformational change ,inhibition ,molecular docking ,tyrosinase ,p‐coumaric acid ethyl ester ,camellia pollen ,Tyrosinase ,lcsh:TX341-641 ,01 natural sciences ,p-Coumaric acid ,Fluorescence spectroscopy ,03 medical and health sciences ,chemistry.chemical_compound ,Countercurrent chromatography ,Original Research ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Chromatography ,010405 organic chemistry ,Arbutin ,0104 chemical sciences ,Solvent ,Enzyme ,chemistry ,lcsh:Nutrition. Foods and food supply ,Food Science - Abstract
A tyrosinase inhibitor was separated from camellia pollen with the aid of solvent fraction, macroporous adsorptive resin chromatography, and high‐speed countercurrent chromatography. The inhibitor was identified to be p‐coumaric acid ethyl ester (p‐CAEE) by nuclear magnetic resonance and mass spectrum. Its inhibitory activity (IC50 = 4.89 μg/ml) was about 10‐fold stronger than arbutin (IC50 = 51.54 μg/ml). The p‐CAEE inhibited tyrosinase in a noncompetitive model with the K I and K m of 1.83 μg/ml and 0.52 mM, respectively. Fluorescence spectroscopy analysis showed the p‐CAEE quenched an intrinsic fluorescence tyrosinase. UV‐Vis spectroscopy analysis showed the p‐CAEE did not interact with copper ions of the enzyme. Docking simulation implied the p‐CAEE induced a conformational change in the catalytic region and thus changed binding forces of L‐tyrosine. Our findings suggest that p‐CAEE plays an important role in inhibiting tyrosinase and provides a reference for developing pharmaceutical, cosmetic, and fruit preservation products using pollen., p‐Coumaric acid ethyl ester was first found in camellia pollen. The inhibition is reversible and dose‐dependent. p‐Coumaric acid ethyl ester altered the structure of tyrosinase. p‐Coumaric acid ethyl ester and pollen had potential applications for pharmaceutical, cosmetic, and fruit preservation. p‐Coumaric acid ethyl ester (p‐CAEE) can inhibit the activity of tyrosinase in a noncompetitive manner and can cause the transformation of tyrosinase.
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- 2020
- Full Text
- View/download PDF
49. Revealing the subtyping of non‐small cell lung cancer based on genomic evolutionary patterns by multi‐region sequencing
- Author
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Zedong Jiang, Xiaoqiu Dong, Chaohan Xu, Jianlong Liao, Yong Zhang, Xin Liang, Xiaobo Hou, Yanyan Ping, Yun Xiao, Yihan Wang, and Gaoming Liao
- Subjects
0301 basic medicine ,non‐small cell lung cancer ,Cancer Research ,Poor prognosis ,tumor evolution ,Lung Neoplasms ,Somatic cell ,evolutionary pattern ,Biology ,Clonal Evolution ,03 medical and health sciences ,0302 clinical medicine ,Carcinoma, Non-Small-Cell Lung ,Databases, Genetic ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,phylogenetic tree ,Lung cancer ,Gene ,Phylogeny ,Original Research ,Cancer Biology ,Phylogenetic tree ,intra‐tumor heterogeneity ,Computational Biology ,High-Throughput Nucleotide Sequencing ,Genomics ,medicine.disease ,Prognosis ,Phenotype ,Subtyping ,Survival Rate ,030104 developmental biology ,Oncology ,Evolutionary biology ,030220 oncology & carcinogenesis ,Mutation ,Non small cell - Abstract
Accurately classifying patients with non‐small cell lung cancer (NSCLC) from the perspective of tumor evolution has not been systematically studied to date. Here, we reconstructed phylogenetic relationships of somatic mutations in 100 early NSCLC patients (327 lesions) through reanalyzing the TRACERx data. Based on the genomic evolutionary patterns presented on the phylogenetic trees, we grouped NSCLC patients into three evolutionary subtypes. The phylogenetic trees among three subtypes exhibited distinct branching structures, with one subtype representing branched evolution and another reflecting the early accumulation of genomic variation. However, in the evolutionary pattern of the third subtype, some mutations experienced selective sweeps and were gradually replaced by multiple newly formed subclonal populations. The subtype patients with poor prognosis had higher intra‐tumor heterogeneity and subclonal diversity. We combined genomic heterogeneity with clinical phenotypes analysis and found that subclonal expansion results in the progression and deterioration of the tumor. The molecular mechanisms of subtype‐specific Early Driver Feature (EDF) genes differed across the evolutionary subtypes, reflecting the characteristics of the subtype itself. In summary, our study provided new insights on the stratification of NSCLC patients based on genomic evolution that can be valuable for us to understand the development of pulmonary tumor profoundly., The NSCLC patients were grouped into three subtypes based on the genomic evolutionary patterns. The phylogenetic trees among subtypes exhibited distinct branching structures. The molecular mechanisms of subtype‐specific EDF genes differed across the evolutionary subtypes.
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- 2020
50. Two‐dimensional liquid chromatography analysis of all‐ trans‐ , 9‐ cis‐ , and 13‐ cis‐ astaxanthin in raw extracts from Phaffia rhodozyma
- Author
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Chun Wang, Feng Chen, Qingbiao Li, Ling Wu, Du Xiping, Zedong Jiang, Zhipeng Li, Faizan A. Sadiq, and Hui Ni
- Subjects
Accuracy and precision ,Chromatography ,Phaffia rhodozyma ,Plant Extracts ,Calibration curve ,Chemistry ,Basidiomycota ,010401 analytical chemistry ,All trans ,Stereoisomerism ,Filtration and Separation ,04 agricultural and veterinary sciences ,Thermal treatment ,Xanthophylls ,040401 food science ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,chemistry.chemical_compound ,0404 agricultural biotechnology ,Astaxanthin ,Isomerization ,Chromatography, High Pressure Liquid ,Cis–trans isomerism - Abstract
An effective two-dimensional liquid chromatography method has been established for the analysis of all-trans-astaxanthin and its geometric isomers from Phaffia rhodozyma employing a C18 column at the first dimension and a C30 column in the second dimension, connected by a 10-port valve using the photo-diode array detector. The regression equation of astaxanthin calibration curve was established, and the precision and accuracy values were found to be in the range of 0.32-1.14% and 98.21-106.13%, respectively. By using two-dimensional liquid chromatography, it was found that day light, ultrasonic treatment, and heat treatment have significant influence on the content of all-trans-astaxanthin in the extract from P. rhodozyma due to the transformation of all-trans-astaxanthin to cis-astaxanthin. The day light and ultrasonic treatments more likely transform all-trans-astaxanthin to 9-cis-astaxanthin, and the thermal treatment transforms all-trans-astaxanthin to 13-cis-astaxanthin. These results indicate that the two-dimensional liquid chromatography method can facilitate monitoring astaxanthin isomerization in the raw extract from P. rhodozyma. In addition, the study will provide a general reference for monitoring other medicals and bioactive chemicals with geometric isomers.
- Published
- 2020
- Full Text
- View/download PDF
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