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Abstract For the first time using computerized ionospheric tomography (CIT) and leveraging ultra-dense slant total electron content (STEC) measurements derived from two ground-based Global Navigation Satellite System (GNSS) receiver networks in Japan, we have reconstructed the 3-D field-aligned structure of nighttime medium-scale traveling ionospheric disturbances (MSTIDs) with high spatiotemporal resolution. The CIT algorithm focuses on electron density perturbation components, allowing for the imaging of disturbances with small amplitudes and scales. Slant TECs used for CIT are setup to consist of two components: the background derived from IRI-2016 model and TEC perturbations obtained by subtracting a 30-min running average from observations. The resolution is set to 0.25º in latitude and longitude, 10 km in altitude, 30 s in time. Simulations were conducted to assess the performance of the CIT algorithm, revealing that this technique has good fidelity by accurately reconstructing more than 80% of the electron density perturbations. The focus is on the nighttime event of July 4, 2022, when data were accessible. The reconstruction results show that the MSTIDs initially form at lower altitudes and subsequently develop to exhibit large amplitudes and scales that extend to higher altitudes, characterized by a well-defined frontal structure with electrodynamic signatures. These results are consistent with theories and snippets of observational evidence regarding electromagnetic-influenced MSTIDs, hence affirming the effectiveness of the developed CIT technique in probing of the variations in the 3-D structure of ionospheric electron density. This is expected to contribute to a compressive understanding of the underlying mechanisms of ionospheric inhomogeneities. Graphical Abstract

Abstract To investigate solar activity dependence of the coupling between medium-scale traveling ionosphere disturbance (MSTID) and sporadic E (Es) layer, we analyzed the total electron content (TEC) obtained from a Japanese global positioning system (GPS) receivers and ionosonde at Kokubunji (35.7° N, 139.5° E) in Japan during the summer period of May–August from 1998 to 2019. To obtain perturbation TEC caused by MSTIDs, the detrended TEC is calculated by subtracting 1-h moving averages from the measured TEC for each pair of GPS satellite and receiver. The detrended TEC data are mapped on to the geographical coordinates to make detrended 2-D maps with spatial resolution of 0.15° × 0.15° in longitude and latitude. The MSTID activity is defined as a ratio of the standard deviation to the background TEC over Kokubunji in Japan. Day-to-day variations of the MSTID activity during summer nights was compared to Es layer parameters [critical frequency ( $${f}_{o}Es$$ f o E s ) and $${\Delta f}_{o-b}\equiv {f}_{o}Es-{f}_{b}E$$ Δ f o - b ≡ f o E s - f b E , where $${f}_{{\text{b}}}Es$$ f b E s is blanketing frequency] derived from ionosonde station at Kokubunji. We have found that the correlation coefficient between the MSTID activity and $${f}_{o}Es$$ f o E s ( $${\Delta f}_{o-b}$$ Δ f o - b ) between 1998 and 2019 is 0.5 3 (0.46) on average, suggesting that there is an electrodynamical coupling between the Es layer and F region could generate nighttime MSTIDs. We also have found that the correlation coefficient positively correlates with solar activity. This finding indicates that in the high solar activity conditions, when the growth rate of Perkins instability is relatively low, generation of the polarization electric fields in the $$Es$$ Es layer could play a more important role to grow MSTIDs than in the low solar activity conditions. Graphical Abstract

Abstract Plasma blob is generally a low‐latitude phenomenon occurring at the poleward edge of equatorial plasma bubble (EPB) during post‐sunset periods. Here we report a case of midlatitude ionospheric plasma blob‐like structures occurring along with super EPBs over East Asia around sunrise during the May 2024 great geomagnetic storm. Interestingly, the blob‐like structures appeared at both the poleward and westward edges of EPBs, reached up to 40°N magnetic latitudes, and migrated westward several thousand kilometers together with the bubble. The total electron content (TEC) inside the blob‐like structures was enhanced by ∼50 TEC units relative to the ambient ionosphere. The blob‐like structure at the EPB poleward edge could be partly linked with field‐aligned plasma accumulation due to poleward development of bubble. For the blob‐like structure at the EPB west side, one possible mechanism is that it was formed and enhanced accompanying the bubble evolution and westward drift.

Abstract We present X‐ray observations of the upper atmospheric density disturbance caused by the explosive eruption of the Hunga Tonga‐Hunga Ha'apai (HTHH) volcano on 15 January 2022. From 14 January to 16 January, the Chinese X‐ray astronomy satellite, Insight‐HXMT, was observing the supernova remnant Cassiopeia A. The X‐ray data obtained during Earth's atmospheric occultations allowed us to measure neutral densities in the altitude range of ∼90–150 km. The density profiles above 110 km altitude obtained before the major eruption are in reasonable agreement with expectations by both GAIA and NRLMSIS 2.0 models. In contrast, after the HTHH eruption, a severe density depletion was found up to 1,000 km away from the epicenter, and a relatively weak depletion extending up to ∼7,000 km for over 8 hr after the eruption. In addition, density profiles showed wavy structures with a typical length scale of either ∼20 km (vertical) or ∼1,000 km (horizontal). This may be caused by Lamb waves or gravity waves triggered by the volcanic eruption.

Interfacial damages (wear, delamination) and bone damage (remodeling, micro-cracks) can significantly affect the local bone deterioration and loosening of the acetabular cup. However, limited research has been conducted on both delamination and bone remodeling. This study aims to analyze the loosening behavior of an acetabular cup caused by the interaction of both interfacial damages and bone remodeling under different boundary conditions. A three-dimensional model of the acetabular cup was developed, and mechanically-induced remodeling behavior was implemented for the surrounding bone while the interfacial delamination between the cup and bone was modeled using the fracture mechanics approach. The delamination in the low initial bone mineral density (BMDs) cases encompasses almost the entire cup surface, which significantly affects the local bone remodeling process. The bone density near the top edge could be reduced to 20% in the lowest BMDs case which exaggerates the local strain accumulation and causes it to approach the micro-breaking limit. The loosening risk of the 45∘ fixation was reported in the low BMDs case which is a major limitation in conventional operation procedures for elderly patients. The interactive effect of the low BDMs, inclination angle, and loading amplitude can reduce the aseptic loosening life by half. This can be attributed to the amplified embedding of the acetabular cup caused by the delamination-induced reduction of the bone density. In future works, we aim to further consider anisotropic bone remodeling, microstructure of the bone, and delamination initiation behavior of surface coating.

Abstract Electrodynamic coupling between the ionospheric E and F regions is widely recognized as the underlying mechanism for generating medium-scale traveling ionospheric disturbances (MSTIDs) during nighttime at midlatitudes. Recently, the double-thin-shell approach has proven to be a useful tool for studying the E–F coupling. By using total electron content (TEC) measurements, this approach enables the simultaneous reconstruction of electron density perturbations in both the E and F regions with broad and continuous coverage. However, the current reconstruction performance is limited when using only GPS-TEC measurements from GEONET, a dense network of ground-based Global Navigation Satellite System (GNSS) receivers over Japan. The expansion of available data sources and the integration of multi-GNSS observation data are considered important to enhance the double-thin-shell model. Fortunately, SoftBank Corp., a Japanese telecommunications provider, has recently developed a dense independent GNSS observation network to improve positioning services. In this paper, we analyze the potential of the improved double-thin-shell approach and emphasize the importance of incorporating multi-GNSS observation data from both GEONET and SoftBank networks. The solvability analysis, simulation, and observation results collectively indicate a substantial improvement in the spatiotemporal resolution. Specifically, the longitudinal and latitudinal resolution is improved from 0.15° to 0.1° in the E region, and from 0.5° to 0.3° in the F region. The temporal resolution is also improved from 2 to 1 min. In addition, significant improvements have been achieved in the reconstruction performance, particularly for the E region under complex background conditions. Based on these assessments, we conclude that the incorporation of GEONET and SoftBank GNSS observation data holds significant potential for improving the double-thin-shell model and advancing our understanding of MSTIDs. Graphical abstract

Abstract The occurrence of equatorial spread F (ESF) has the potential to detrimentally impact space-based technological systems. This study investigates the utility of ionosondes in forecasting the incidence of post-sunset ESF in the zonal direction, utilizing observational data obtained from four ionosondes located near the magnetic Equator in Southeast Asia. Data were collected during the equinox seasons (March–April and September–October) between 2003 and 2020. To establish a relationship between the probability of post-sunset ESF occurrence and the evening vertical plasma drift (v), a logistic regression model was employed. Post-sunset ESF occurrence is defined as the presence of ESF during the time window between 19:00 and 21:00 LT, while v is derived from the average time derivative of virtual heights during the interval from 18:30 to 19:00 LT. Results indicate that the probability of post-sunset ESF occurrence approaches zero, signifying that ESF is unlikely to develop when v is negative. Conversely, when v exceeds 30 m/s, the probability of post-sunset ESF occurrence surpasses 0.87, indicating that ESF occurs almost invariably. The likelihood of post-sunset ESF occurrence reaches 1 when v equals or exceeds 40 m/s. Utilizing this model, the study determined that a single ionosonde positioned at the Equator can effectively forecast the incidence of post-sunset ESF up to a longitudinal distance of 30° from its location. The accuracy of ionosondes in predicting post-sunset ESF occurrence above their respective locations is approximately 0.80, with a 10% decrease in accuracy when forecasting ESF occurrence at longitudinal distances of 30°. In conclusion, this study enhances our understanding of the link between the evening vertical plasma drift and the manifestation of post-sunset ESF by leveraging ionosonde data. Furthermore, it provides valuable insights into the recommended coverage range of ionosondes for predicting post-sunset ESF occurrence in the zonal direction, which can be employed to fortify regional space weather services. Graphical Abstract

Abstract On behalf of the journal, AGU, and the scientific community, the editors of Geophysical Research Letters would like to sincerely thank those who reviewed manuscripts for us in 2023. The hours reading and commenting on manuscripts not only improve the manuscripts, but also increase the scientific rigor of future research in the field. With the advent of AGU's data policy, many reviewers have also helped immensely to evaluate the accessibility and availability of data, and many have provided insightful comments that helped to improve the data presentation and quality. We greatly appreciate the assistance of the reviewers in advancing open science, which is a key objective of AGU's data policy. We particularly appreciate the timely reviews in light of the demands imposed by the rapid review process at Geophysical Research Letters. We received 4,512 submissions in 2023 and 5,112 reviewers contributed to their evaluation by providing 8,587 reviews in total. We deeply appreciate their contributions.

Abstract The Hunga Tonga–Hunga Ha’apai (HTHH) undersea volcanic eruption that occurred at 04:15 UT on 15 January 2022 is one of the most explosive events in the modern era, and a vertical plume reached approximately 55 km, corresponding to a height of the lower mesosphere. The intense explosion and subsequent plume generated acoustic and atmospheric gravity waves detected by ground-based instruments worldwide. Because a global-scale atmospheric and ionospheric response to the large volcanic eruption has not yet been observed, it provides a unique opportunity to promote interdisciplinary studies of coupling processes in lithosphere–atmosphere–ionosphere with ground-based and satellite observations and modeling. Further, this event allows us to elucidate the propagation and occurrence features of traveling ionospheric disturbances, the generation of equatorial plasma bubbles, the cause of electron density holes around the volcano, and the magnetic conjugacy of magnetic field perturbations. The most notable point among these studies is that the medium-scale travelling traveling ionospheric disturbances (MSTIDs) have magnetic conjugacy even in the daytime ionosphere and are generated by an external electric field, such as an E-region dynamo field, due to the motions of neutrals in the thermosphere. This advocates a new generation mechanism of MSTIDs other than the neutral oscillation associated with atmospheric gravity waves and electrified MSTIDs, which are frequently observed during daytime and nighttime, respectively. This paper reviews the recent studies of atmospheric and ionospheric disturbances after the HTHH volcanic eruption and summarizes what we know from this extreme event analysis. Further, we analyzed new datasets not shown in previous studies to give some new insights to understanding of some related phenomena. As a result, we also found that 4-min plasma flow oscillations caused by the acoustic resonance appeared with the amplitude of approximately 30 m/s in the northern hemisphere a few hours before the initial arrival of the air pressure waves. The propagation direction was westward, which is the same as that of the daytime MSTIDs with a magnetic conjugate feature. This result suggests that the 4-min oscillations are generated by an external electric field transmitted to the northern hemisphere along magnetic field lines. Graphical Abstract

Abstract The explosive eruption of the Hunga Tonga-Hunga Ha’apai volcano on 15 January 2022 generated atmospheric waves traveling around the Earth, which caused ionospheric disturbances on various spatio-temporal scales. A HF Doppler sounding system in Japan detected characteristic ionospheric disturbances showing periodic oscillations in the Doppler frequency with a period of ~ 4 min. In this study, such periodic oscillations were examined by comparing Doppler frequency data with Total Electron Content data obtained by Global Navigation Satellite System. The observed periodic oscillations in the Doppler frequency were characterized by a sawtooth or S-letter shaped variation, implying the passage of the traveling ionospheric disturbances through the reflection points of the HF Doppler sounding system. It was also found that the periodic oscillations occurred prior to the arrival of the tropospheric Lamb wave excited by the Tonga eruption. From the total electron content data, the traveling ionospheric disturbances causing the periodic oscillations were excited by the tropospheric Lamb waves at the conjugate point in the southern hemisphere, namely, the electric field perturbations due to the Lamb waves in the southern hemisphere mapped onto the sensing area of the HF Doppler sounding system in the northern hemisphere along the magnetic field lines. The periodic oscillations were observed only in the path between Chofu transmitter and Sarobetsu receiver, whose the radio propagation path is almost aligned in the north–south direction. This suggests that the traveling ionospheric disturbance has a structure elongating in the meridional direction. The variation in the Doppler frequency was reproduced by using a simple model of the propagation of the traveling ionospheric disturbances and the resultant motion of the reflection point. As a result, the vertical motion of the reflection point associated with the periodic oscillations was estimated to be about 1 km. It is known that 4-min period variations are sometimes observed in association with earthquakes, which is due to resonances of acoustic mode waves propagating between the ground and the lower ionosphere. Therefore, a similar resonance structure in the southern hemisphere is a plausible source of the traveling ionospheric disturbances detected in the northern hemisphere. Graphical Abstract

ABSTRACTBacteria have developed various defense mechanisms against phages. Abortive infection (Abi), a bacterial defense mechanism, can be achieved through various means, including toxin-antitoxin systems, cyclic oligonucleotide-based antiphage signaling systems, and retrons. AbpA and AbpB (AbpAB) defend against many lytic phages harboring double-stranded DNA genomes in Escherichia coli; however, how AbpAB senses phage infection and inhibits its propagation remains unclear. Here, we demonstrated that AbpAB inhibited the growth of the φX174 lytic phage with single-stranded DNA (ssDNA) as well as the lysogenization and induction of the Sakai prophage 5 lysogenic phage. The AbpAB defense system limits T4 and φX174 phage propagation via Abi. AbpA contains a nuclease domain at its N-terminus, and AbpB has an ATP-dependent RNA helicase domain; both domains are required for phage defense. This system is activated by phage Gp32 binding to ssDNA and inhibits E. coli growth. Without phage infection, DNA replication inhibitors or defects in the DNA repair factors RecB and RecC activate this system. Therefore, the E. coli AbpAB defense system may sense DNA-protein complexes, including the phage-encoded ssDNA-binding protein or those formed by interrupting host DNA replication or repair.IMPORTANCEAlthough numerous phage defense systems have recently been discovered in bacteria, how these systems defend against phage propagation or sense phage infections remains unclear. The Escherichia coli AbpAB defense system targets several lytic and lysogenic phages harboring DNA genomes. A phage-encoded single-stranded DNA-binding protein, Gp32, activates this system similar to other phage defense systems such as Retron-Eco8, Hachiman, ShosTA, Nhi, and Hna. DNA replication inhibitors or defects in DNA repair factors activate the AbpAB system, even without phage infection. This is one of the few examples of activating phage defense systems without phage infection or proteins. The AbpAB defense system may be activated by sensing specific DNA-protein complexes.

Abstract Equatorial plasma bubbles are a phenomenon of plasma density depletion with small-scale density irregularities, normally observed in the equatorial ionosphere. This phenomenon, which impacts satellite-based communications, was observed in the Asia-Pacific region after the largest-on-record January 15, 2022 eruption of the Tonga volcano. We used satellite and ground-based ionospheric observations to demonstrate that an air pressure wave triggered by the Tonga volcanic eruption could cause the emergence of an equatorial plasma bubble. The most prominent observation result shows a sudden increase of electron density and height of the ionosphere several ten minutes to hours before the initial arrival of the air pressure wave in the lower atmosphere. The propagation speed of ionospheric electron density variations was ~ 480–540 m/s, whose speed was higher than that of a Lamb wave (~315 m/s) in the troposphere. The electron density variations started larger in the Northern Hemisphere than in the Southern Hemisphere. The fast response of the ionosphere could be caused by an instantaneous transmission of the electric field to the magnetic conjugate ionosphere along the magnetic field lines. After the ionospheric perturbations, electron density depletion appeared in the equatorial and low-latitude ionosphere and extended at least up to ±25° in geomagnetic latitude.

Abstract The X-rays and extreme ultraviolet (EUV) emitted during solar flares can rapidly change the physical composition of Earth’s ionosphere, causing space weather phenomena. It is important to develop an accurate understanding of solar flare emission spectra to understand how it affects the ionosphere. We reproduced the entire solar flare emission spectrum using an empirical model and physics-based model, and input it into the Earth’s atmospheric model, GAIA to calculate the total electron content (TEC) enhancement due to solar flare emission. We compared the statistics of nine solar flare events and calculated the TEC enhancements with the corresponding observed data. The model used in this study was able to estimate the TEC enhancement due to solar flare emission with a correlation coefficient greater than 0.9. The results of this study indicate that the TEC enhancement due to solar flare emission is determined by soft X-ray and EUV emission with wavelengths shorter than 35 nm. The TEC enhancement is found to be largely due to the change in the soft X-ray emission and EUV line emissions with wavelengths, such as Fe XVII 10.08 nm, Fe XIX 10.85 nm and He II 30.38 nm. Graphical Abstract

Abstract Relativistic electron precipitation (REP) from the Earth’s radiation belt plays an important role in mesospheric ozone loss as a connection between space weather and the climate system. However, the rapid (tens of minutes) destruction of mesospheric ozone directly caused by REP has remained poorly understood due to the difficulty of recognizing its location and duration. Here we show a compelling rapid correspondence between localized REP and ozone destruction during a specific auroral phenomenon, the called an isolated proton aurora (IPA). The IPA from the Earth’s radiation belt becomes an important spatial and temporal proxy of REP, distinct from other auroral phenomena, and allowing visualizing micro-ozone holes. We found ozone destruction of as much as 10–60% within 1.5 h of the initiation of IPA. Electromagnetic ion cyclotron waves in the oxygen ion band observed as the driver of REP likely affect through resonance with mainly ultra-relativistic (> 2 mega-electron-volts) energy electrons. The rapid REP impact demonstrates its crucial role and direct effect on regulating the atmospheric chemical balance.

Abstract This study, for the first time, reports the geomagnetically conjugate structure of a plasma bubble extending to the mid-latitudes and the asymmetrical structure of the decay of the plasma bubble during a geomagnetic storm. We investigated the temporal and spatial variations of plasma bubbles in the Asian sector during a geomagnetic storm on March 1, 2013, using Global Navigation Satellite System-total electron content data with high spatiotemporal resolutions. The first important point of our data analysis results is that the plasma bubble extended from the equator to the mid-latitudes with geomagnetic conjugacy along the magnetic field lines. The total electron content data showed that the plasma bubbles appeared in the equatorial regions near 150° E after sunset during the main phase of the geomagnetic storm. From ionosonde data over both Japan and Australia, they suggest that a large eastward electric field existed in the Asian sector. Finally, the plasma bubbles extended up to the mid-latitudes (~ 43° geomagnetic latitude) in both hemispheres, maintaining geomagnetic conjugacy. The second point is that the mid-latitude plasma bubble disappeared 1–2 h earlier in the northern hemisphere than in the southern hemisphere at close to midnight. In the northern hemisphere, the ionospheric virtual height decreased near midnight, followed by a rapid decrease in the total electron content and a rapid increase in the ionospheric virtual height. These results imply that the mid-latitude plasma bubble disappeared as the background plasma density decreased after midnight due to the recombination resulting from the descent of the F layer. Therefore, we can conclude that mid-latitude plasma bubbles can be asymmetric between the northern and southern hemispheres because of the rapid decay of plasma bubbles in one of the hemispheres. Graphical Abstract

Abstract To elucidate the characteristics of electromagnetic conjugacy of traveling ionospheric disturbances just after the 15 January 2022 Hunga Tonga-Hunga Ha’apai volcanic eruption, we analyze Global Navigation Satellite System-total electron content data and ionospheric plasma velocity data obtained from the Super Dual Auroral Radar Network Hokkaido pair of radars. Further, we use thermal infrared grid data with high spatial resolution observed by the Himawari 8 satellite to identify lower atmospheric disturbances associated with surface air pressure waves propagating as a Lamb mode. After 07:30 UT on 15 January, two distinct traveling ionospheric disturbances propagating in the westward direction appeared in the Japanese sector with the same structure as those at magnetically conjugate points in the Southern Hemisphere. Corresponding to these traveling ionospheric disturbances with their large amplitude of 0.5 – 1.1 × 1016 el/m2 observed in the Southern Hemisphere, the plasma flow direction in the F region changed from southward to northward. At this time, the magnetically conjugate points in the Southern Hemisphere were located in the sunlit region at a height of 105 km. The amplitude and period of the plasma flow variation are ~ 100–110 m/s and ~ 36–38 min, respectively. From the plasma flow perturbation, a zonal electric field is estimated as ~ 2.8–3.1 mV/m. Further, there is a phase difference of ~ 10–12 min between the total electron content and plasma flow perturbations. This result suggests that the external electric field variation generates the traveling ionospheric disturbances observed in both Southern and Northern Hemispheres. The origin of the external electric field is an E-region dynamo driven by the neutral wind oscillation associated with atmospheric acoustic waves and gravity waves. Finally, the electric field propagates to the F region and magnetically conjugate ionosphere along magnetic field lines with the local Alfven speed, which is much faster than that of Lamb mode waves. From these observational facts, it can be concluded that the E-region dynamo electric field produced in the sunlit Southern Hemisphere is a main cause of the two distinct traveling ionospheric disturbances appearing over Japan before the arrival of the air pressure disturbances. Graphical Abstract

Abstract A strong volcanic eruption caused a clear vertical acoustic resonance between the sea surface and the thermosphere. Its effects are observed as geomagnetic and GPS-TEC oscillations near the volcano and its geomagnetic conjugate area. The geomagnetic oscillations are observed at Apia and Honolulu geomagnetic observatories with amplitude of about 2 nT and 0.2 nT, respectively. The volcanic eruption started around 04:14 UT on January 15, 2022. The oscillations appeared at 04:21UT at Apia, Samoa, only about 7 min after the start of eruption. Because the distance between the volcano and Apia is about 841 km, it takes about 40 min for a sound wave to propagate from the volcano to Apia. Therefore, it is more plausible to assume that the magnetic oscillation observed at Apia about 7 min after the eruption is caused by the sound waves propagated vertically upward to the ionosphere and generated an electric current. The coherent appearance of geomagnetic oscillation at Honolulu located near the geomagnetic conjugate point of the volcano strongly support the idea that the ionospheric current generated over the volcano diverted as a field-aligned current which flew to the opposite hemisphere and caused the geomagnetic oscillation at Honolulu. The earliest start of GPS-TEC oscillation was around 04:15UT near the volcanic eruption, and it was around 04:20 UT at KOKV station in Hawaii. The time-lag of the TEC variations between Samoa and Hawaii obtained by a cross-correlation analysis is 4.5 min or 8.5 min. These time differences are much smaller than the travel time of the seismic waves from the volcano to Hawaii islands. Therefore, it is suggested that the electric field transmitted along geomagnetic field caused the TEC variation observed over Hawaii Islands. A sawtooth waveform of geomagnetic oscillation observed at Apia and Honolulu is analyzed and a possible generation mechanism is discussed. Graphical Abstract

This brief report examines the ground-based total electron content (TEC) in Asian sector during August–October 2019, covering the period of a stratosphere sudden warming (SSW) occurred in Antarctica. The analysis reveals pronounced ionospheric day-to-day variability with distinct periodicities. The most dominant and long-lasting periodicities are quasi-10 days and quasi 14-day during September and October, while a quasi 6-day also present in September. The 10-day and 6-day TEC oscillations were attributed by previous studies solely to the Antarctic SSW while assuming negligible geomagnetic effects. By comparing co-located ground mesospheric wind observations, along with the interplanetary electric field (IEF) and geomagnetic activity (Kp index), we demonstrate that the quasi 14-day oscillation is mainly driven by low-level geomagnetic activities, while quasi-6 days oscillation is driven by mesospheric wind changes during the SSW. The 10-day oscillation, on the other hand, is driven by both IEF and mesospheric wind in September, but by IEF in October. These results demonstrate that low-level geomagnetic activities traditionally classified as “quiet conditions” can induce significant day-to-day oscillations in TEC, and their impacts should not be ignored when studying meteorological (e.g., SSWs) impacts on the ionosphere.

Abstract We carried out a statistical analysis of the propagation characteristics of Es and Medium-Scale Traveling Ionospheric Disturbances (MSTIDs) by combining data of HF Doppler (HFD) sounder and Total Electron Content (TEC) obtained from the GPS receivers of GEONET (GPS-TEC) for 4 years from 2014 to 2017. We made use of Es reflection data from the HFD receivers in Sugito, Saitama (36.0°N, 139.7°E), Fujisawa, Kanagawa (35.3°N, 139.5°E), and Sugadaira, Nagano (36.4°N, 138.3°E) in Japan. By using this triangle observation, we succeeded in deriving the horizontal speed and direction of the motion of Es. In addition, we estimated the phase velocity of MSTIDs observed in the simultaneously obtained maps of GPS-TEC with the same triangle observation procedure. The speeds of Es and MSTIDs were commonly less than 100 m/s in most cases and their propagation direction was predominantly southwestward. This result is consistent with the statistical characteristics of nighttime MSTIDs observed in the previous studies. More importantly, good correspondence between the propagation characteristics of the two phenomena at two different altitudes confirms that Es and MSTIDs move in tandem with each other, further suggesting that Es in the E region plays an important role in the generation and propagation of MSTIDs in the F region. Graphical Abstract

The density, porosity and compressive strength of white Portland cement (WPC) samples were evaluated to study their potential for use for bone implant applications. The effects of simulated body fluid (SBF) solution on the compressive strengths of WPC samples were also examined by immersing the sample in an SBF solution. The formation of bone-like apatite on the surface and in the internal structure of the WPC samples after immersion in an SBF solution was investigated. After 28 days of water curing, the compressive strength and porosity of the WPC samples were 51.88 MPa and 41.83%, respectively. The WPC samples tested after immersion in an SBF solution showed an improvement in compressive strength at approximately 13 percent, which is a good indicator for its use as a bone implant material. Bone-like apatite was apparently formed on the surfaces and in the internal structures of WPC samples after 28 days of immersion in an SBF solution. The thickness of the bone-like apatite forming was about 30 µm.

Abstract We provide the first unbiased evidence for a higher-order topological Mott insulator in three dimensions by numerically exact quantum Monte Carlo simulations. This insulating phase is adiabatically connected to a third-order topological insulator in the noninteracting limit, which features gapless modes around the corners of the pyrochlore lattice and is characterized by a $${\mathbb {Z}}_{4}$$ Z 4 spin-Berry phase. The difference between the correlated and non-correlated topological phases is that in the former phase the gapless corner modes emerge only in spin excitations being Mott-like. We also show that the topological phase transition from the third-order topological Mott insulator to the usual Mott insulator occurs when the bulk spin gap solely closes.

This paper reports that plasma density depletions appearing at middle latitudes near sunrise survived until afternoon on 29 May 2017 during the recovery phase of a geomagnetic storm. By analyzing GPS data collected in Japan, we investigate temporal variations in the horizontal two-dimensional distribution of total electron content (TEC) during the geomagnetic storm. The SYM-H index reached −142 nT around 08 UT on 28 May 2017. TEC depletions extending up to approximately 38°N along the meridional direction appeared over Japan around 05 LT (LT = UT + 9 hours) on 29 May 2017, when TEC rapidly increased at sunrise due to the solar extreme ultraviolet (EUV) radiation. The TEC depletions appeared sequentially over Japan for approximately 8 hours in sunlit conditions. At 06 LT on 29 May, when the plasma depletions first appeared over Japan, the background TEC was enhanced to approximately 17 TECU, and then decreased to approximately 80% of the TEC typical of magnetically quiet conditions. We conclude that this temporal variation of background plasma density in the ionosphere was responsible for the persistence of these plasma depletions for so long in daytime. By using the Naval Research Laboratory: Sami2 is Another Model of the Ionosphere (SAMI2), we have evaluated how plasma production and ambipolar diffusion along the magnetic field may affect the rate of plasma depletion disappearance. Simulation shows that the plasma density increases at the time of plasma depletion appearance; subsequent decreases in the plasma density appear to be responsible for the long-lasting persistence of plasma depletions during daytime. The plasma density depletion in the top side ionosphere is not filled by the plasma generated by the solar EUV productions because plasma production occurs mainly at the bottom side of the ionosphere.

The study of ionospheric irregularities is important since many technological systems might be influenced by the ionosphere. In this work, we use data from the Global Navigation Satellite Systems (GNSS) receiver installed in Abuja, Nigeria, GPS Scintillation Network Decision Aid (SCINDA) TEC data from the Air Force Research Laboratory (AFRL) data archive, and the geomagnetic data from the World Data Center (WDC) in Kyoto, Japan, to investigate the relationship between geomagnetic storm and ionospheric irregularity occurrences using the rate of change of total electron content (TEC) index (ROTI), with a validation using the S4 indices, during the peak of the 24th solar cycle. The occurrences of irregularities were investigated on day-to-day and seasonal bases. The nighttime ionospheric irregularities, which are attributed to ionospheric plasma irregularities in the equatorial ionospheric F-region, were found to be prevalent. To investigate the relationship between the strength of ionospheric irregularities (ROTI) and the geomagnetic storm (Dst), the periodogram power spectral density (PSD) and regression analysis were used. The results showed that there was no correlation, cc = 0.073, between the Dst and ROTI, implying that the strengths of ionospheric irregularities occurring during geomagnetic storms are not strictly decided by the magnitudes of the storms; this was also confirmed using the S4 index. The impact of geomagnetic storms caused enhanced development or inhibition of ionospheric irregularities. We observed that the bulk of the storms occurring during the period of this study is not associated with ionospheric irregularities. Finally, the investigation showed that the correlation between the ROTI and Dst observed during the coronal mass ejection (CME)-driven geomagnetic storms was higher than that during the corotating interaction region (CIR)-driven geomagnetic storms, during the peak of the 24th solar cycle. The results of this work confirm the findings by other researchers.

The use of waste or natural resources is an interesting approach to preparing adsorbent materials. Most adsorption materials are powder-based, making them impractical for a variety of applications. In this work, the natural kaolin clay and hydroxyapatite synthesized from biogenic waste were studied as defluoridation materials. The point of zero charge (pHPZC), the fluoride adsorption capability and the adsorption isotherm of calcined kaolin and mixed calcined kaolin/hydroxyapatite in both powdered and moulded forms were investigated. The hardness of the moulded (post-formed) samples was tested before and after in immersion in a fluoride solution. The maximum hardness was 15.8 kilo-pounds for the post-formed calcined kaolin sample. Sample hardness values slightly decreased after immersion in a fluoride solution due to the formation of micro-cracks. Most samples presented high pHPZC values, implying that these materials are suitable for the capture of fluoride anions. The adsorption properties varied with the ratio of calcined kaolin to hydroxyapatite. These properties for post-formed samples were different from those in powdered form. Post-formed samples showed higher fluoride adsorption. The maximum fluoride adsorption capacity and efficiency of the post-formed samples (calcined kaolin) at pH 3 were 1.74 F− mg/g and 87%, respectively. The sorption of fluoride of hydroxyapatite and mixed calcined kaolin/hydroxyapatite powders was found to have the form of the Langmuir isotherm, which indicates a monolayer adsorption on the adsorbent surface. Isotherms of calcined kaolin powder, post-formed calcined kaolin and mixed calcined kaolin/hydroxyapatite samples followed the Freundlich isotherm, which indicates multilayer adsorption on a heterogenous adsorbent surface.

Abstract Although solar activity may significantly impact the global environment and socioeconomic systems, the mechanisms for solar eruptions and the subsequent processes have not yet been fully understood. Thus, modern society supported by advanced information systems is at risk from severe space weather disturbances. Project for solar–terrestrial environment prediction (PSTEP) was launched to improve this situation through synergy between basic science research and operational forecast. The PSTEP is a nationwide research collaboration in Japan and was conducted from April 2015 to March 2020, supported by a Grant-in-Aid for Scientific Research on Innovative Areas from the Ministry of Education, Culture, Sports, Science and Technology of Japan. By this project, we sought to answer the fundamental questions concerning the solar–terrestrial environment and aimed to build a next-generation space weather forecast system to prepare for severe space weather disasters. The PSTEP consists of four research groups and proposal-based research units. It has made a significant progress in space weather research and operational forecasts, publishing over 500 refereed journal papers and organizing four international symposiums, various workshops and seminars, and summer school for graduate students at Rikubetsu in 2017. This paper is a summary report of the PSTEP and describes the major research achievements it produced.

Abstract This paper presents the results of a coordinated measurement campaign with ground based and satellite observations over European and Japanese regions during September 5–6, 2017. Two incoherent scatter radars, two satellite missions, International Reference Ionosphere (IRI-2016) empirical model, and Field Line Interhemispheric Plasma (FLIP) physical model were employed to examine the regular behavior of the F2-layer peak height and density and the topside ionosphere electron density, electron, and ion temperatures as well as traveling ionospheric disturbances (TIDs). The daily ionospheric variations over Kharkiv and Shigaraki exhibited similar behavior qualitatively and quantitatively. The results show that none of the empirical IRI-2016 models of F2-layer peak height, topside electron density, and temperature can be preferred for predicting the key qualitative features of variations in ionospheric plasma parameters over Kharkiv and Shigaraki. The likely reason is rapid day to day changes in solar activity and series of moderate enhancements of magnetic activity occurring in the observation period and preceding days. Compared with IRI-2016 model, the FLIP physical model was shown to provide the best agreement with the observations when constrained to follow the observed diurnal variations of F2-layer peak height both over Europe and Japan. This paper presents the first direct comparison of the mid-latitude electron density measured by the Swarm satellite with incoherent scatter radar data and it confirms the high quality of the space-borne data. For the first time, evidence of the possible need to increase the neutral hydrogen density in NRLMSISE-00 model by at least a factor of 2 was obtained for the Asian longitudinal sector. The TIDs, which have predominant periods of about 50 min over Europe and 80 min over Japan, were detected, likely caused by passage of the solar terminator. Such a difference in the periods could indicate regional features and is the topic for further research.

Abstract This study investigates the medium-scale traveling ionospheric disturbances (MSTIDs) statistically at the low-latitude equatorial ionization anomaly (EIA) region in the northern hemisphere. We apply the automatic detection algorithm including the three-dimensional fast Fourier transform (3-D FFT) and support vector machine (SVM) on total electron content (TEC) observations, derived from a network of ground-based global navigation satellite system (GNSS) receivers in Taiwan (14.5° N geomagnetic latitude; 32.5° inclination), to identify MSTID from other waves or irregularity features. The obtained results are analyzed statistically to examine the behavior of low-latitude MSTIDs. Statistical results indicate the following characteristics. First, the southward (equatorward) MSTIDs are observed almost every day during 0800–2100 LT in Spring and Winter. At midnight, southward MSTIDs are more discernible in Summer and majority of them are propagating from Japan to Taiwan. Second, northward (poleward) MSTIDs are more frequently detected during 1200–2100 LT in Spring and Summer with the secondary peak of occurrence between day of year (DOY) 100–140 during 0000–0300 LT. The characteristics of the MSTIDs are interpreted with additional observations from radio occultation (RO) soundings of FORMOSAT-3/COSMIC as well as modeled atmospheric waves from the high-resolution Whole Atmosphere Community Climate Model (WACCM) suggesting that the nighttime MSTIDs in Summer is likely connected to the atmospheric gravity waves (AGWs).

Abstract We attempted to reproduce the total electron content (TEC) variation in the Earth's atmosphere from the temporal variation of the solar flare spectrum of the X9.3 flare on September 6, 2017. The flare spectrum from the Flare Irradiance Spectral Model (FISM), and the flare spectrum from the 1D hydrodynamic model, which considers the physics of plasma in the flare loop, are used in the GAIA model, which is a simulation model of the Earth's whole atmosphere and ionosphere, to calculate the TEC difference. We then compared these results with the observed TEC. When we used the FISM flare spectrum, the difference in TEC from the background was in a good agreement with the observation. However, when the flare spectrum of the 1D-hydrodynamic model was used, the result varied depending on the presence or absence of the background. This difference depending on the models is considered to represent which extreme ultraviolet (EUV) radiation is primarily responsible for increasing TEC. From the flare spectrum obtained from these models and the calculation result of TEC fluctuation using GAIA, it is considered that the enhancement in EUV emission by approximately 15–35 nm mainly contributes in increasing TEC rather than that of X-ray emission, which is thought to be mainly responsible for sudden ionospheric disturbance. In addition, from the altitude/wavelength distribution of the ionization rate of Earth's atmosphere by GAIA (Ground-to-topside Atmosphere and Ionosphere model for Aeronomy), it was found that EUV radiation of approximately 15–35 nm affects a wide altitude range of 120–300 km, and TEC enhancement is mainly caused by the ionization of nitrogen molecules.

The 2nd Equatorial Plasma Bubble (EPB) workshop, funded by the Institute of Geology and Geophysics, Chinese Academy of Sciences, and the National Natural Science Foundation of China, took place in Beijing, China during September 13–15, 2019. The EPB workshop belongs to a conference series that began in 2016 in Nagoya, Japan at the Institute for Space-Earth Environmental Research, Nagoya University, resulting in a special issue of Progress in Earth and Planetary Science that focused on EPBs. The main goal of the series is to organize in-depth discussion by scientists working on ionospheric irregularities, and solve the scientific challenges in EPB and ionospheric scintillation forecasting. The 2nd EPB workshop gathered almost 60 scientists from seven countries. A total of 20 invited and contributing papers focusing on ionospheric irregularities and scintillations were presented. Here we briefly comment on 10 papers included in this special issue.

Abstract The total electron content (TEC) data derived from the GAIA (Ground-to-topside model of Atmosphere Ionosphere for Aeronomy) is used to study the seasonal and longitudinal variation of occurrence of medium-scale traveling ionospheric disturbances (MSTIDs) during daytime (09:00–15:00 LT) for the year 2011 at eight locations in northern and southern hemispheres, and the results are compared with ground-based Global Positioning System (GPS)-TEC. To derive TEC variations caused by MSTIDs from the GAIA (GPS) data, we obtained detrended TEC by subtracting 2-h (1-h) running average from the TEC, and calculated standard deviation of the detrended TEC in 2 h (1 h). MSTID activity was defined as a ratio of the standard deviation to the averaged TEC. Both GAIA simulation and GPS observations data show that daytime MSTID activities in the northern and southern hemisphere (NH and SH) are higher in winter than in other seasons. From the GAIA simulation, the amplitude of the meridional wind variations, which could be representative of gravity waves (GWs), shows two peaks in winter and summer. The winter peak in the amplitude of the meridional wind variations coincides with the winter peak of the daytime MSTIDs, indicating that the high GW activity is responsible for the high MSTID activity. On the other hand, the MSTID activity does not increase in summer. This is because the GWs in the thermosphere propagate poleward in summer, and equatorward in winter, and the equatorward-propagating GWs cause large plasma density perturbations compared to the poleward-propagating GWs. Longitudinal variation of daytime MSTID activity in winter is seen in both hemispheres. The MSTID activity during winter in the NH is higher over Japan than USA, and the MSTID activity during winter in the SH is the highest in South America. In a nutshell, GAIA can successfully reproduce the seasonal and longitudinal variation of the daytime MSTIDs. This study confirms that GWs cause the daytime MSTIDs in GAIA and amplitude and propagation direction of the GWs control the noted seasonal variation. GW activities in the middle and lower atmosphere cause the longitudinal variation.

Abstract In order to reveal solar activity dependence of the medium-scale traveling ionospheric disturbances (MSTIDs) at midlatitudes, total electron content (TEC) data obtained from a Global Positioning System (GPS) receiver network in Japan during 22 years from 1998 to 2019 were analyzed. We have calculated the detrended TEC by subtracting the 1-h running average from the original TEC data for each satellite and receiver pair, and made two-dimensional TEC maps of the detrended TEC with a spatial resolution of 0.15° × 0.15° in longitude and latitude. We have investigated MSTID activity, defined as $$\delta I/\overline{I}$$ δ I / I ¯ , where $$\delta I$$ δ I and $$\overline{I}$$ I ¯ are standard deviation of the detrended TEC and the average vertical TEC within the area of 133.0°–137.0° E and 33.0°–37.0° N for 1 h, respectively. From each 2-h time series of the detrended TEC data within the same area as the MSTID activity, auto-correlation functions (ACFs) of the detrended TEC were calculated to estimate the horizontal propagation velocity and direction of the MSTIDs. Statistical results of the MSTID activity and propagation direction of MSTIDs were consistent with previous studies and support the idea that daytime MSTIDs could be caused by atmospheric gravity waves, and that nighttime MSTIDs were caused by electro-dynamical forces, such as the Perkins instability. From the current long-term observations, we have found that the nighttime MSTID activity and occurrence rate increased with decreasing solar activity. For the daytime MSTID, the occurrence rate increased with decreasing solar activity, whereas the MSTID activity did not show distinct solar activity dependence. These results suggest that the secondary gravity waves generated by dissipation of the primary gravity waves propagating from below increase under low solar activity conditions. The mean horizontal phase velocity of the MSTIDs during nighttime did not show a distinct solar activity dependence, whereas that during daytime showed an anticorrelation with solar activity. The horizontal phase velocity of the daytime MSTIDs was widely distributed from 40 to 180 m/s under high solar activity conditions, whereas it ranged between 80 and 200 m/s, with a maximum occurrence at 130 m/s under low solar activity conditions, suggesting that gravity waves with low phase velocity could be dissipated by high viscosity in the thermosphere under low solar activity conditions.

Abstract Using a whole atmosphere–ionosphere coupled model GAIA (ground-to-topside model of atmosphere and ionosphere), we have investigated which parameters mainly control day-to-day variation of vertical plasma drift at the evening terminator over magnetic equator, so-called pre-reversal enhancement (PRE). Day-to-day variations of the peak PRE are compared with those of electron density, eastward current density and eastward neutral wind in the E- and F-region over Chumphon (10.7° N, 99.4° E; 0.86° N magnetic latitude), Thailand during equinoctial months in 2011–2013. Eastward neutral wind in the F-region shows positive correlation with peak PRE, indicating that the F-region winds control the peak PRE through the mechanisms of the F-region dynamo (including E- and F-region coupling processes). Daytime eastward electric current at an altitude of 110 km, corresponding to equatorial electro jet (EEJ), is also positively correlated with the peak PRE. Correlation between the EEJ and PRE is the largest at 1700 LT, approximately 1.5 h prior to the peak PRE.

Abstract Here, we introduce a low-cost airglow imaging system developed for observing plasma bubble signatures in 630.0-nm airglow emission from the F region of the ionosphere. The system is composed of a small camera, optical filter, and fish-eye lens, and is operated using free software that automatically records video from the camera. A pilot system was deployed in Ishigaki Island in the southern part of Japan (Lat 24.4, Lon 124.4, Mlat 19.6) and was operated for ~ 1.5 years from 2014 to 2016 corresponding to the recent solar maximum period. The pilot observations demonstrated that it was difficult to identify the plasma bubble signature in the raw image captured every 4 s. However, the quality of the image could be improved by reducing the random noise of instrumental origin through an integration of 30 consecutive raw images obtained in 2 min and further by subtracting the 1-h averaged background image. We compared the deviation images to those from a co-existing airglow imager of OMTIs, which is equipped with a back-illuminated cooled CCD camera with a high quantum efficiency of ~ 90%. It was confirmed that the low-cost airglow imager is capable of imaging the spatial structure of plasma bubbles, including their bifurcating traces. The results of these pilot observations in Ishigaki Island will allow us to distribute the low-cost imager in a wide area and construct a network for monitoring plasma bubbles and their space weather impacts on satellite navigation systems.

Surface wettability behaviour is generally categorised as hydrophobic and hydrophilic depending on the contact angle value. Surface wettability has been attracting considerable attention in research due to its unique behaviour in the field of self-cleaning, anti-fouling and anti-corrosion. Surfaces with high and low wettabilities can be fabricated using various methods, including chemical etching, anodisation and laser surface texturing. The present study investigated the effects of textured surfaces via laser surface texturing on the wettability properties of TiO2/ZnO coatings. TiO2/ZnO coating was selected due to its high photocatalytic activity, non-toxicity and low cost, which are essential properties for self-cleaning and anti-fouling applications. Picosecond laser ablation was used to produce micro- dimple textures on the coating surfaces. The wettability of the laser-textured surfaces was greatly reduced, achieving superhydrophilic properties with contact angle of 1.4° ± 2.42° for laser-textured TiO2 coating. On the other hand, coatings with ZnO compositions exhibited increased contact angles for both textured and non-textured surfaces. Moreover, no clear cut correlations between the surface roughness properties of non-textured and laser-textured TiO2/ZnO coatings and the surface wettability properties was observed. This finding provides new approaches in designing textured surface materials that can effectively increase the wettability properties for self-cleaning and anti-fouling applications.

Abstract Plasma density irregularities in the equatorial ionosphere are thought to cause the distortions of L‐band Synthetic Aperture Radar (SAR) images, which have been observed in recent years, but the origin of the image distortion has not yet been clearly identified experimentally. We report on the first simultaneous observation of equatorial plasma bubbles (EPBs) by the ALOS‐2/PALSAR‐2 satellite and ground 630‐nm airglow imager in northern Brazil. We observe stripe‐like distortions of SAR signal power that are aligned in the direction of local magnetic field lines. The stripe‐like patterns are observed in the vicinity of airglow depletion. The result shows that the observed L‐band SAR stripes are caused by ionospheric scintillation due to plasma irregularities with the scale size of hundreds of meters associated with EPBs. We show that the SAR scintillation stripes are predominantly found at the location of sharp density gradients in the two‐dimensional form.

Abstract Energy input from the magnetosphere during substorms can strongly affect the high-latitude thermosphere. The ionospheric current caused by thermospheric wind variations may also provide a feedback to the magnetosphere. In this study, we investigate the characteristics of high-latitude thermospheric wind variations at local substorm onsets at Tromsø, Norway, as well as the possibility of such feedback mechanism. A Fabry–Perot interferometer (FPI) at Tromsø provided wind measurements estimated from the Doppler shift of red-line emission (630.0 nm) of aurora and airglow. We analyzed wind data in 2009 with a time resolution of ~ 13 min. We first carefully identified the onset times of isolated local substorms at Tromsø and extracted four wind measurements from red-line emission. All these events showed increases of eastward components at local substorm onsets. For northward components, these events showed decreases except for those at midnight. The observed wind variations at local substorm onsets were less than 49 m/s. These values are much smaller than the typical plasma convection speed in the auroral zone. We speculate that the ionospheric current caused by thermospheric wind variations at local substorm onsets does not provide strong feedback to the development of substorm expansion phase in the magnetotail. We discuss the possible causes of these wind variations in the context of plasma convection, diurnal tides, and arc-associated electric field.

Electron precipitation plays major role in magnetospheric physics and space weather. Here the authors show nonlinear behavior of the wave–particle interaction in the magnetosphere as the evolution of chorus electromagnetic waves detected by the Arase satellite and PWING observatory.

The occurrence of post-sunset equatorial spread-F (ESF) could have detrimental effects on trans-ionospheric radio wave propagation used in modern communications systems. This problem calls for a simple but robust model that accurately predicts the occurrence of post-sunset ESF. Logistic regression was implemented to model the daily occurrence of post-sunset ESF as a function of the evening upward plasma drift (v). The use of logistic regression is formalized by y^=1/[1+exp(−z)], where y^ represents the probability of post-sunset ESF occurrence, and z is a linear function containing v. The value of v is derived from the vertical motion of the bottom side of the F-region in the evening equatorial ionosphere, which is observed by the ionosondes in Southeast Asia. Data points (938) of v and post-sunset ESF occurrence were collected in the equinox seasons from 2003 to 2016. The training set used 70% of the dataset to derive z and y^ and the remaining 30% was used to test the performance of y^. The expression z=−2.25+0.14v was obtained from the training set, and y^≥0.5 (v ≥ ~16.1 m/s) and y^<0.5 (v < ~16.1 m/s) represented the occurrence and non-occurrence of ESF, respectively, with an accuracy of ~0.8 and a true skill score (TSS) of ~0.6. Similarly, in the testing set, y^ shows an accuracy of ~0.8 and a TSS of ~0.6. Further analysis suggested that the performance of the z-function can be reliable in the daily F10.7 levels ranging from 60 to 140 solar flux units. The z-function implemented in the logistic regression (y^) found in this study is a novel technique to predict the post-sunset ESF occurrence. The performance consistency between the training set and the testing set concludes that the z-function and the y^ values of the proposed model could be a simple and robust mathematical model for daily nowcasting the occurrence or non-occurrence of post-sunset ESFs.

Abstract This paper provides a brief review of ionospheric irregularities that occur in magnetically equatorial and low-latitude regions post-midnight during low solar activity periods. Ionospheric irregularities can occur in equatorial plasma bubbles. Plasma bubbles are well-known to frequently occur post-sunset when the solar terminator is nearly parallel to the geomagnetic field lines (during equinoxes at the longitude where the declination of the geomagnetic field is almost equal to zero and near the December solstice at the longitude where the declination is tilted westward), especially during high solar activity conditions via the Rayleigh–Taylor instability. However, recent observations during a solar minimum period show a high occurrence rate of irregularities post-midnight around the June solstice. The mechanisms for generating the post-midnight irregularities are still unknown, but two candidates have been proposed. One candidate is the seeding of the Rayleigh–Taylor instability by atmospheric gravity waves propagating from below into the ionosphere. The other candidate is the uplift of the F layer by the meridional neutral winds in the thermosphere, which may be associated with midnight temperature maximums in the thermosphere.

Abstract Occurrences of equatorial plasma bubbles (EPBs) and medium-scale traveling ionospheric disturbances (MSTIDs) were studied using GPS satellite data-based total electron content mapping, ionograms, and 630 nm all-sky airglow images observed over the South American continent during the period of 2014–2015. In many cases, we observed a close relationship between the inter-bubble distance and the horizontal wavelength of the MSTIDs. The MSTIDs followed by EPBs occurred primarily in the afternoon to evening period under strong tropospheric convective activities (cold fronts and/or intertropical convergence zones). The close relationship between EPBs and MSTIDs suggests that MSTIDs could be one of the seeding sources of EPBs.

Abstract The relationship between day-to-day variability of equatorial plasma bubbles (EPBs) and the neutral atmosphere is studied. This study is based on the previous study in which the GPS scintillation index and the tropospheric cloud-top temperature are used as proxies for EPB activity and atmospheric perturbations, respectively, and a correlation was found between their day-to-day variations. In this paper, we maintained the same GPS scintillation data but substituted the atmospheric data via an assimilation run of the Ground-to-topside model of Atmosphere and Ionosphere for Aeronomy (GAIA). Cross-correlation between the EPB activity and the atmospheric temperature is similar to the results in Ogawa et al. (Earth Planets Space 61:397–410, 2009). The new findings from our study include (1) an enhanced correlation between the EPB activity and the neutral atmosphere is found in horizontally and vertically large areas, (2) the longitudinal disturbance of atmospheric temperature and wind velocity during the EPB-active days is enhanced, and (3) the enhancement of atmospheric disturbance during the EPB-active days shows a similarity to the characteristics of large-scale wave structures in the ionosphere. These results more clearly support couplings between EPBs and the neutral atmosphere.

Abstract The linear growth rates of the Rayleigh-Taylor (R-T) instability in the ionosphere from 2011 to 2013 were obtained with a whole atmosphere-ionosphere coupled model GAIA (ground-to-topside model of atmosphere and ionosphere for aeronomy). The effects of thermospheric dynamics driven by atmospheric waves propagating from below on the R-T growth rate are included in the model by incorporating meteorological reanalysis data in the region below 30 km altitude. The daily maximum R-T growth rates for these periods are compared with the observed occurrence days of the equatorial plasma bubble (EPB) determined by the Equatorial Atmosphere Radar (EAR) and Global Positioning System (GPS) in West Sumatra, Indonesia. We found that a high R-T growth rate tends to correspond to the actual EPB occurrence, suggesting the possibility of predicting EPB occurrences with numerical models.

Abstract Unexpected daytime F-region irregularities following the appearance of an ionospheric hole have been observed over low latitude. The irregularities developed initially above the F-region peak height (~ 360 km) with a thickness of about 30 km and an east-west extension of more than 200 km around 1057 LT and then expanded upward to 500 km altitude behaving like the equatorial spread-F (ESF) irregularities of the nighttime ionosphere. These daytime F-region irregularities cannot be explained on basis of an earlier suggestion that the F-region irregularities observed during daytime are the continuation of the irregularities initially generated on the previous night. Based on the coincidence, both in space and time, with the appearance of an ionospheric hole, which was generated after the passage of a rocket, we conclude that the daytime F-region irregularities must have been artificially generated locally through a manifestation of plasma instability triggered by the rocket exhaust-induced ionospheric hole over low latitude.

The toxin-antitoxin (TA) genetic modules control various bacterial events, such as plasmid maintenance, persister cell formation, and phage defense. They also exist in mobile genetic elements, including prophages; however, their physiological roles remain poorly understood. Here, we demonstrate that hokW-sokW, a putative TA locus encoded in Sakai prophage 5 (Sp5) in enterohemorrhagic Escherichia coli O157: H7 Sakai strain, functions as a type I TA system. Bacterial growth assays showed that the antitoxic activity of sokW RNA against HokW toxin partially requires an endoribonuclease, RNase III, and an RNA chaperone, Hfq. We also demonstrated that hokW-sokW assists Sp5-mediated lysis of E. coli cells when prophage induction is promoted by the DNA-damaging agent mitomycin C (MMC). We found that MMC treatment diminished sokW RNA and increased both the expression level and inner membrane localization of HokW in a RecA-dependent manner. Remarkably, the number of released Sp5 phages decreased by half in the absence of hokW-sokW. These results suggest that hokW-sokW plays a novel role as a TA system that facilitates the release of Sp5 phage progeny through E. coli lysis.

Abstract The plasmas (electrons and ions) in the inner magnetosphere have wide energy ranges from electron volts to mega-electron volts (MeV). These plasmas rotate around the Earth longitudinally due to the gradient and curvature of the geomagnetic field and by the co-rotation motion with timescales from several tens of hours to less than 10 min. They interact with plasma waves at frequencies of mHz to kHz mainly in the equatorial plane of the magnetosphere, obtain energies up to MeV, and are lost into the ionosphere. In order to provide the global distribution and quantitative evaluation of the dynamical variation of these plasmas and waves in the inner magnetosphere, the PWING project (study of dynamical variation of particles and waves in the inner magnetosphere using ground-based network observations, http://www.isee.nagoya-u.ac.jp/dimr/PWING/ ) has been carried out since April 2016. This paper describes the stations and instrumentation of the PWING project. We operate all-sky airglow/aurora imagers, 64-Hz sampling induction magnetometers, 40-kHz sampling loop antennas, and 64-Hz sampling riometers at eight stations at subauroral latitudes (~ 60° geomagnetic latitude) in the northern hemisphere, as well as 100-Hz sampling EMCCD cameras at three stations. These stations are distributed longitudinally in Canada, Iceland, Finland, Russia, and Alaska to obtain the longitudinal distribution of plasmas and waves in the inner magnetosphere. This PWING longitudinal network has been developed as a part of the ERG (Arase)-ground coordinated observation network. The ERG (Arase) satellite was launched on December 20, 2016, and has been in full operation since March 2017. We will combine these ground network observations with the ERG (Arase) satellite and global modeling studies. These comprehensive datasets will contribute to the investigation of dynamical variation of particles and waves in the inner magnetosphere, which is one of the most important research topics in recent space physics, and the outcome of our research will improve safe and secure use of geospace around the Earth.

Abstract Bacteriophages have strict host specificity and the step of adsorption is one of key factors for determining host specificity. Here, we systematically examined the interaction between the Escherichia coli receptors lipopolysaccharide (LPS) and outer membrane protein C (OmpC), and the long tail fibers of bacteriophage T4. Using a variety of LPS mutants, we demonstrated that T4 has no specificity for the sugar sequence of the outer core (one of three LPS regions) in the presence of OmpC but, in the absence of OmpC, can adsorb to a specific LPS which has only one or two glucose residues without a branch. These results strengthen the idea that T4 adsorbs to E. coli via two distinct modes, OmpC‐dependent and OmpC‐independent, suggested by previous reports (Prehm et al. 1976; Yu and Mizushima 1982). Isolation and characterization of the T4 mutants Nik (No infection to K‐12 strain), Nib (No infection to B strain), and Arl (altered recognition of LPS) identified amino acids of the long tail fiber that play important roles in the interaction with OmpC or LPS, suggesting that the top surface of the distal tip head domain of T4 long tail fibers interacts with LPS and its lateral surface interacts with OmpC.

The aim of this study was to reveal the mechanism of enhancement of antibacterial properties of gray titania by plasma-sprayed hydroxyapatite (HAp)–amino acid fluorescent complexes under irradiation with visible light. Although visible-light–sensitive photocatalysts are applied safely to oral cavities, their efficacy is not high because of the low energy of irradiating light. This study proposed a composite coating containing HAp and gray titania. HAp itself functioned as bacteria catchers and gray titania released antibacterial radicals by visible-light irradiation. HAp-amino acid fluorescent complexes were formed on the surface of the composite coating in order to increase light intensity to gray titania by fluorescence, based on an idea bioinspired by deep-sea fluorescent coral reefs. A cytotoxicity assay on murine osteoblastlike cells revealed that biocompatibility of the HAp–amino acid fluorescent complexes was identical with the that of HAp. Antibacterial assays involving Escherichia coli showed that the three types of HAp–amino acid fluorescent complexes and irradiation with three types of light-emitting diodes (blue, green, and red) significantly decreased colony-forming units. Furthermore, kelvin probe force microscopy revealed that the HAp–amino acid fluorescent complexes preserved the surface potentials even after irradiation with visible light, whereas those of HAp were significantly decreased by the irradiation. Such a preservative effect of the HAp–amino acid fluorescent complexes maintained the bacterial-adhesion performance of HAp and consequently enhanced the antibacterial action of gray titania.

The rapid age growth in most of the developed countries leads to application of artificial joints such as knee joints and hip joints. The properties of titanium alloy such as light weight, high strength and good biocompatibility make it a suitable material for wide usage as artificial joints. However, titanium alloy cannot directly adhered with human bone; thus, bonds or coating are required. Plasma-sprayed hydroxyapatite (HAp) is widely used as a coating to bond artificial Ti-6Al-4V implants with human bone. The contact slip mainly occurs at the HAp-Ti-6Al-4V interface which also known as possible delamination interface in hip joint artificial implant. The coating fretting fatigue delamination condition can lead to contact slip at HAp coating-Ti-6Al-4V interface which will accelerate HAp coating fretting wear behavior. This paper presents the influence of normal loading, fatigue loading and delamination length on contact slip distributions at HAp coating-Ti-6Al-4V interface through finite element based methodology. A simple FE contact configuration model consist of contact pad, HAp coating and Ti-6Al-4V substrate is examined under static simulation. The predicted results revealed that lower normal load with higher maximum fatigue loading condition could promote more contact slip distribution. The contact slip is also increased with increasing delamination length. The induced contact slip can accelerates fretting wear behavior of HAp coating.

Antimicrobial peptides are potential molecules for the development of novel antibiotic agents. The ZorO toxin of a type I toxin−antitoxin system in Escherichia coli O157:H7 is composed of 29 amino acids and its endogenous expression inhibits E. coli growth. However, little is known about its inhibitory mechanism. In this study, we demonstrate that the ZorO localized in the inner membrane affects the plasma membrane integrity and potential when expressed in E. coli cells, which triggers the production of cytotoxic hydroxyl radicals. We further show that five internal amino acids (Ala−Leu−Leu−Arg−Leu; ALLRL) of ZorO are necessary for its toxicity. This result prompted us to address the potential of the synthetic ALLRL peptide as an antimicrobial. Exogenously-added ALLRL peptide to Gram-positive bacteria, Staphylococcus aureus and Bacillus subtilis, and a fungus, Candida albicans, trigger cell membrane damage and exhibit growth defect, while having no effect on Gram-negative bacterium, E. coli. The ALLRL peptide retains its activity under the physiological salt concentrations, which is in contrast to natural antimicrobial peptides. Importantly, this peptide has no toxicity against mammalian cells. Taken together, an effective and short peptide, ALLRL, would be an attractive antimicrobial to Gram-positive bacteria and C. albicans.

Between 130 and 170 km altitude in the daytime ionosphere, the so-called 150-km field-aligned irregularities (FAIs) have been observed since the 1960s at equatorial regions with several very high frequency (VHF) radars. We report statistical results of 150-km FAI drift velocities on a plane perpendicular to the geomagnetic field, acquired by analyzing the Doppler velocities of 150-km FAIs observed with the Equatorial Atmosphere Radar (EAR) at Kototabang, Indonesia during the period from Aug. 2007 to Oct. 2009. We found that the southward/upward perpendicular drift velocity of the 150-km FAIs tends to decrease in the afternoon and that this feature is consistent with that of F-region plasma drift velocities over the magnetic equator. The zonal component of the 150-km FAI drift velocity is westward and decreases with time, whereas the F-region plasma drift velocity observed with the incoherent scatter radar at Jicamarca, Peru, which is westward, reaches a maximum at about noon. The southward/upward and zonal drift velocities of the 150-km FAIs are smaller than that of the F-region plasma drift velocity by approximately 3 m/s and 25 m/s, respectively, on average. The large difference between the 150-km FAI and F-region plasma drift velocities may not arise from a difference in the magnetic latitudes at which their electric fields are generated. Electric fields generated at the altitude at which the 150-km FAIs occur may not be negligible.