239 results on '"Xiaojie Zhu"'
Search Results
2. The association of preoperative radiotherapy and surgery for AJCC stage I-III rectal adenocarcinoma: a population-based study
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Yuhan Wang, Xiaojie Zhu, Weiwei Pan, Zhulin Li, Zhengyu Hu, Bo Hou, and Hai Meng
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Preoperative radiotherapy ,Rectal adenocarcinoma ,Surgery ,Circumferential resection margin ,Lymph nodes examined ,Restricted cubic spline ,RD1-811 - Abstract
Abstract Background With the increasing application of neoadjuvant therapy in rectal adenocarcinoma, there remain many controversies in clinical practical applications. Preoperative radiotherapy (PR) can limit the surgical plane and potentially affect the quality of surgical treatment. This study aimed to investigate the potential impact of PR on the surgical quality of rectal adenocarcinoma. Methods This retrospective study analyzed the clinicopathological data from 6,585 AJCC stage I-III rectal adenocarcinoma in the Surveillance, Epidemiology, and End Results (SEER) database from 2010 to 2015. Kaplan-Meier survival analysis and multivariate Cox proportional were used to assess the impact of PR on survival. Propensity score matching (PSM) was employed to balance the baseline covariates between the PR and non-PR groups and to compare postoperative pathological differences. Results After PSM, PR did not improve overall survival (OS) in stages I (p = 0.33), II (p = 0.37), and III (p = 0.14) patients. Multivariate Cox analysis indicated that PR was not an independent prognostic factor for patients. Restricted cubic spline (RCS) analysis demonstrated a nonlinear negative correlation between OS hazard ratios and both circumferential resection margin (CRM) and lymph node evaluation (LNE). Compared to the non-PR group, patients in the PR group had lower tumor deposits (TD) (p
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- 2024
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3. Antiviral activity of luteolin against porcine epidemic diarrhea virus in silico and in vitro
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Jieru Wang, Xiaoyu Zeng, Jiaojiao Gou, Xiaojie Zhu, Dongdong Yin, Lei Yin, Xuehuai Shen, Yin Dai, and Xiaocheng Pan
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PEDV ,Luteolin ,Porcine ACE2 ,Spike ,Mpro ,Pro-inflammatory cytokine ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background Porcine epidemic diarrhea virus (PEDV) mainly causes acute and severe porcine epidemic diarrhea (PED), and is highly fatal in neonatal piglets. No reliable therapeutics against the infection exist, which poses a major global health issue for piglets. Luteolin is a flavonoid with anti-viral activity toward several viruses. Results We evaluated anti-viral effects of luteolin in PEDV-infected Vero and IPEC-J2 cells, and identified IC50 values of 23.87 µM and 68.5 µM, respectively. And found PEDV internalization, replication and release were significantly reduced upon luteolin treatment. As luteolin could bind to human ACE2 and SARS-CoV-2 main protease (Mpro) to contribute viral entry, we first identified that luteolin shares the same core binding site on pACE2 with PEDV-S by molecular docking and exhibited positive pACE2 binding with an affinity constant of 71.6 µM at dose-dependent increases by surface plasmon resonance (SPR) assay. However, pACE2 was incapable of binding to PEDV-S1. Therefore, luteolin inhibited PEDV internalization independent of PEDV-S binding to pACE2. Moreover, luteolin was firmly embedded in the groove of active pocket of Mpro in a three-dimensional docking model, and fluorescence resonance energy transfer (FRET) assays confirmed that luteolin inhibited PEDV Mpro activity. In addition, we also observed PEDV-induced pro-inflammatory cytokine inhibition and Nrf2-induced HO-1 expression. Finally, a drug resistant mutant was isolated after 10 cell culture passages concomitant with increasing luteolin concentrations, with reduced PEDV susceptibility to luteolin identified at passage 10. Conclusions Our results push forward that anti-PEDV mechanisms and resistant-PEDV properties for luteolin, which may be used to combat PED.
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- 2024
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4. Robust Estimation of Component Reliability Based on System Lifetime Data with Known Signature
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Xiaojie Zhu, Hon Keung Tony Ng, and Ping Shing Chan
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censoring ,maximum likelihood estimation ,minimum density divergence ,Monte Carlo simulation ,Weibull distribution ,Statistics ,HA1-4737 ,Probabilities. Mathematical statistics ,QA273-280 - Abstract
This paper considers the estimation of component reliability based on system lifetime data with known system signature using the minimum density divergence estimation method. Different estimation procedures based on the minimum density divergence estimation method are proposed. Standard error estimation and interval estimation procedures are also studied. Then, a Monte Carlo simulation study is used to evaluate the performance of those proposed procedures and compare those procedures with the maximum likelihood estimation method under different contaminated models. A numerical example is presented to illustrate the effectiveness of the proposed minimum density divergence estimation method. We have shown that the proposed estimation procedures are robust to contamination and model misspecification. Finally, concluding remarks with some possible future research directions are provided.
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- 2024
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5. Development of multiplex real-time PCR for simultaneous detection of SARS-CoV-2, CCoV, and FIPV
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Yan Liu, Zhen Zhu, Jige Du, Xiaojie Zhu, Chenfan Pan, Chunsheng Yin, and Weidong Sun
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real-time PCR ,FIPV ,canine coronavirus ,SARS-CoV-2 ,detection ,Veterinary medicine ,SF600-1100 - Abstract
IntroductionCoronaviruses, including severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), canine coronavirus (CCoV), and feline infectious peritonitis virus (FIPV), have the potential for interspecies transmission. These viruses can be present in complex environments where humans, dogs, and cats coexist, posing a significant threat to both human and animal safety.Methods and resultsIn this study, we developed a novel multiplex TaqMan-probe-based real-time PCR assay for the simultaneous detection and differentiation of SARS-CoV-2, CCoV, and FIPV. Specific primers and TaqMan fluorescent probes were designed based on the N region of SARS-CoV-2 and FIPV, as well as the S region of CCoV, which demonstrated a remarkable sensitivity and specificity toward the targeted viruses, as few as 21.83, 17.25 and 9.25 copies/μL for SARS-CoV-2, CCoV and FIPV, respectively. The standard curve constructed by the optimized method in our present study showed a high amplification efficiency within or near the optimal range of 91% to 116% and R(2) values were at least 0.95 for the abovementioned coronaviruses. A total of 91 samples, including six plasmid mixed mock samples, four virus fluid mixing simulated samples, and 81 clinical samples, were analyzed using this method. Results demonstrated strong agreement with conventional approaches.DiscussionBy enabling the simultaneous detection of three viruses, this method enhances testing efficiency while decreasing costs. Importantly, it provides a valuable tool for the prevalence and geographical distribution of suspected and co-infected animals, ultimately contributing to the advancement of both animal and public health.
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- 2024
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6. Disconnection data transmission technology based on mine monitoring substation
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Xiaojie ZHU
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monitoring substation ,continuous transmission of disconnected data ,data storage ,data preprocessing ,data transmission ,Mining engineering. Metallurgy ,TN1-997 - Abstract
In order to ensure the consistency and completeness of monitoring data in the safety monitoring system of coal mines, a design scheme for continuous transmission of disconnected data was proposed in response to faults in the monitoring substation equipment. The methods for fault recognition of data transmission, data preprocessing, data storage strategies, and data transmission protocols were studied. Based on the principle of invariable nonstorage, analog data with invalid values was cleaned up by bit storage compression of discrete transient data. Two-level storage of data was achieved by using FLASH and ferroelectric memory, and the data storage format and strategy were described. Network transmission protocols and bus transmission protocols were formulated separately to implement data continuation functions. The experimental results showed that after the main communication of the substation was interrupted, the monitoring data could be continuously stored for 7 days, and the correct rate of data continuation after the end of the failure reached 100%. This solution effectively solved the problem of missing data caused by equipment failure in the substation, ensured the integrity of monitoring data, and improved the reliability of the monitoring system.
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- 2023
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7. Slik maintains tissue homeostasis by preventing JNK-mediated apoptosis
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Chenglin Li, Xiaojie Zhu, Xinyue Sun, Xiaowei Guo, Wenzhe Li, Ping Chen, Yulii V. Shidlovskii, Qian Zhou, and Lei Xue
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Slik ,JNK ,Drosophila ,Apoptosis ,Homeostasis ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Cytology ,QH573-671 - Abstract
Abstract Background The c-Jun N-terminal kinase (JNK) pathway is an evolutionarily conserved regulator of cell death, which is essential for coordinating tissue homeostasis. In this study, we have characterized the Drosophila Ste20-like kinase Slik as a novel modulator of JNK pathway-mediated apoptotic cell death. Results First, ectopic JNK signaling-triggered cell death is enhanced by slik depletion whereas suppressed by Slik overexpression. Second, loss of slik activates JNK signaling, which results in enhanced apoptosis and impaired tissue homeostasis. In addition, genetic epistasis analysis suggests that Slik acts upstream of or in parallel to Hep to regulate JNK-mediated apoptotic cell death. Moreover, Slik is necessary and sufficient for preventing physiologic JNK signaling-mediated cell death in development. Furthermore, introduction of STK10, the human ortholog of Slik, into Drosophila restores slik depletion-induced cell death and compromised tissue homeostasis. Lastly, knockdown of STK10 in human cancer cells also leads to JNK activation, which is cancelled by expression of Slik. Conclusions This study has uncovered an evolutionarily conserved role of Slik/STK10 in blocking JNK signaling, which is required for cell death inhibition and tissue homeostasis maintenance in development.
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- 2023
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8. The Prevalence and Molecular Characterization of Bovine Leukemia Virus among Dairy Cattle in Henan Province, China
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Yuxi Zhao, Xiaojie Zhu, Zhen Zhang, Jianguo Chen, Yingyu Chen, Changmin Hu, Xi Chen, Ian D. Robertson, and Aizhen Guo
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bovine leukemia virus ,prevalence ,genotypes ,dairy cattle ,Bayesian phylodynamic analysis ,positive selection ,Microbiology ,QR1-502 - Abstract
Enzootic bovine leukosis, a neoplastic disease caused by the bovine leukemia virus (BLV), was the primary cancer affecting cattle in China before 1985. Although its prevalence decreased significantly between 1986 and 2000, enzootic bovine leukosis has been re-emerging since 2000. This re-emergence has been largely overlooked, possibly due to the latent nature of BLV infection or the perceived lack of sufficient evidence. This study investigated the molecular epidemiology of BLV infections in dairy cattle in Henan province, Central China. Blood samples from 668 dairy cattle across nine farms were tested using nested polymerase chain reaction assays targeting the partial envelope (env) gene (gp51 fragment). Twenty-three samples tested positive (animal-level prevalence of 3.4%; 95% confidence interval: 2.2, 5.1). The full-length env gene sequences from these positive samples were obtained and phylogenetically analyzed, along with previously reported sequences from the GenBank database. The sequences from positive samples were clustered into four genotypes (1, 4, 6, and 7). The geographical annotation of the maximum clade credibility trees suggested that the two genotype 1 strains in Henan might have originated from Japan, while the genotype 7 strain is likely to have originated from Moldova. Subsequent Bayesian stochastic search variable selection analysis further indicated a strong geographical association between the Henan strains and Japan, as well as Moldova. The estimated substitution rate for the env gene ranged from 4.39 × 10−4 to 2.38 × 10−3 substitutions per site per year. Additionally, codons 291, 326, 385, and 480 were identified as positively selected sites, potentially associated with membrane fusion, epitope peptide vaccine design, and transmembrane signal transduction. These findings contribute to the broader understanding of BLV epidemiology in Chinese dairy cattle and highlight the need for measures to mitigate further BLV transmission within and between cattle herds in China.
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- 2024
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9. Risk factors associated with Salmonella in dairy cattle farms in Henan and Hubei provinces, China
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Jie Wang, Xiaojie Zhu, Yuxi Zhao, Yongkang Xue, Zhen Zhang, Lei Yan, Yingyu Chen, Ian D. Robertson, Aizhen Guo, and Joshua W. Aleri
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Cattle ,Management practices ,Risk factors ,Salmonella ,Veterinary medicine ,SF600-1100 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract A cross-sectional study was conducted to evaluate the risk factors associated with the Salmonella infection status of dairy herds in Henan and Hubei provinces, China. Herds were assigned a Salmonella status based on the isolation of Salmonella from fecal samples obtained from adult lactating dairy cows. Information on potential biosecurity risk factors was collected using a questionnaire template via a 15-min face-to-face interview with dairy cattle producers from May 2020 to March 2021. The questionnaire consisted of 23 questions across two broad categories of potential biosecurity risk factors: farm and biosecurity managemental factors. A total of 48 farms were surveyed. In all (100%, 48/48) of the surveyed farms, although sick animals were separated from healthy animals using fencing, there were no strict quarantine protocols for newly introduced animals. Mixed species rearing was practiced in 35.4% (17/48) of the farms. Feces were removed more than once a day in 45.8% (22/48) of the farms, whereas the remainder (54.2%, 26/48) only removed animal feces once a day. A total of 29.2% (14/48) of the farms were located
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- 2023
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10. The association between type 2 diabetes and pulmonary cavitation revealed among IGRA-positive tuberculosis patients
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Min Yang, Pei Li, Han Liu, Xiaojie Zhu, Guofeng Zhu, Peize Zhang, and Guofang Deng
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tuberculosis ,diabetes mellitus ,pulmonary cavitation ,interferon-gamma ,risk factor ,Medicine (General) ,R5-920 - Abstract
The co-occurrence of tuberculosis (TB) and diabetes mellitus (DM) presents a significant obstacle to TB eradication. Pulmonary cavitation can occur in severe cases of TB, particularly in patients with DM. From 1 May 2014 through 30 June 2019, we conducted a cross-sectional study of 1,658 smear- or culture-confirmed pulmonary TB (PTB) patients at the Second Department of Pulmonary Medicine and Tuberculosis, Shenzhen, China. A total of 861 participants who satisfied the criteria (chest CT scan for cavitation, interferon-gamma release assay (IGRA), diagnosis of diabetes mellitus), with the median age of 36.7 years, 63.6% of male, 79.7% IGRA positive, 13.8% with diabetes, and 40.8% with pulmonary cavitation, were included in the study. The association between diabetes and pulmonary cavitation was confirmed in these TB patients (adjusted OR, 2.54; 95% CI, 1.66–3.94; p < 0.001). No associations were observed between diabetes and IGRA, as well as between lung cavitary and IGRA. Based on the criteria of IGRA+/–, pulmonary cavitation+/–, and DM+/–, the further analysis with univariate and multivariate logistic regression were conducted in six subgroups. The significant association between diabetes and pulmonary cavitation was further confirmed in the IGRA+ subgroup (adjusted OR, 3.07; 95% CI, 1.86–5.16; p < 0.001) but not observed in IGRA- individuals. This observation suggests that different immunological mechanisms of pulmonary cavitary/DM may be employed in IGRA+ TB patients from IGRA- TB patients.
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- 2023
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11. Identification of BMP2 gene and its association with growth traits in the razor clam Sinonovacula constricta
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Xiaojie Zhu, Jiaxi Zhao, Congying Lai, Liyuan Lv, Hanhan Yao, and Yinghui Dong
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Sinonovacula constricta ,BMP2 ,RNAi ,SNP ,Growth traits ,Aquaculture. Fisheries. Angling ,SH1-691 - Abstract
Growth is a crucial and intricate trait that significantly impacts clam breeding. BMP2, a member of the bone morphogenetic protein family, is widely recognized for its vital role in promoting growth and development. To study the possible functions of BMP2 in the razor clam Sinonovacula constricta, Sc-BMP2 was identified and characterized from S. constricta genome, and its correlations with growth traits were also analyzed. Compared with Sc-BMP3, Sc-BMP7 and Sc-BMP10, Sc-BMP2 had higher homology in the vertebrates and mollusks. The Sc-BMP2 highly conserved and exhibited an N-terminal signal peptide, Arg-X-X-Arg site and seven conserved cysteine. The results of tissue expression showed that Sc-BMP2 was expressed much higher in the mantle and foot (P
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- 2023
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12. High-Performance Detection of Mycobacterium bovis in Milk Using Recombinase-Aided Amplification–Clustered Regularly Interspaced Short Palindromic Repeat–Cas13a–Lateral Flow Detection
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Jieru Wang, Nan Wang, Lei Xu, Xiaoyu Zeng, Junsheng Cheng, Xiaoqian Zhang, Yinghui Zhang, Dongdong Yin, Jiaojiao Gou, Xiaocheng Pan, and Xiaojie Zhu
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milk ,food safety ,bovine tuberculosis ,CRISPR–Cas13a ,rapid detection ,Chemical technology ,TP1-1185 - Abstract
Mycobacterium bovis (M. bovis), the microorganism responsible for bovine tuberculosis (bTB), is transferred to people by the ingestion of unpasteurized milk and unprocessed fermented milk products obtained from animals with the infection. The identification of M. bovis in milk samples is of the utmost importance to successfully prevent zoonotic diseases and maintain food safety. This study presents a comprehensive description of a highly efficient molecular test utilizing recombinase-aided amplification (RPA)–clustered regularly interspaced short palindromic repeat (CRISPR)-associated protein (Cas) 13a–lateral flow detection (LFD) for M. bovis detection. In contrast to ELISA, RPA–CRISPR–Cas13a–LFD exhibited greater accuracy and sensitivity in the detection of M. bovis in milk, presenting a detection limit of 2 × 100 copies/μL within a 2 h time frame. The two tests exhibited a moderate level of agreement, as shown by a kappa value of 0.452 (95%CI: 0.287–0.617, p < 0.001). RPA–CRISPR–Cas13a–LFD holds significant potential as a robust platform for pathogen detection in complex samples, thereby enabling the more dependable regulation of food safety examination, epidemiology research, and medical diagnosis.
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- 2024
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13. Robust Offloading for Edge Computing-Assisted Sensing and Communication Systems: A Deep Reinforcement Learning Approach
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Li Shen, Bin Li, and Xiaojie Zhu
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integrated communication and sensing ,mobile edge computing ,deep reinforcement learning ,robust design ,computation uncertainty ,Chemical technology ,TP1-1185 - Abstract
In this paper, we consider an integrated sensing, communication, and computation (ISCC) system to alleviate the spectrum congestion and computation burden problem. Specifically, while serving communication users, a base station (BS) actively engages in sensing targets and collaborates seamlessly with the edge server to concurrently process the acquired sensing data for efficient target recognition. A significant challenge in edge computing systems arises from the inherent uncertainty in computations, mainly stemming from the unpredictable complexity of tasks. With this consideration, we address the computation uncertainty by formulating a robust communication and computing resource allocation problem in ISCC systems. The primary goal of the system is to minimize total energy consumption while adhering to perception and delay constraints. This is achieved through the optimization of transmit beamforming, offloading ratio, and computing resource allocation, effectively managing the trade-offs between local execution and edge computing. To overcome this challenge, we employ a Markov decision process (MDP) in conjunction with the proximal policy optimization (PPO) algorithm, establishing an adaptive learning strategy. The proposed algorithm stands out for its rapid training speed, ensuring compliance with latency requirements for perception and computation in applications. Simulation results highlight its robustness and effectiveness within ISCC systems compared to baseline approaches.
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- 2024
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14. Cancelable biometric schemes for Euclidean metric and Cosine metric
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Yubing Jiang, Peisong Shen, Li Zeng, Xiaojie Zhu, Di Jiang, and Chi Chen
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Biometric template protection ,Distance-preserving hashing ,Many-to-one mapping ,Computer engineering. Computer hardware ,TK7885-7895 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
Abstract The handy biometric data is a double-edged sword, paving the way of the prosperity of biometric authentication systems but bringing the personal privacy concern. To alleviate the concern, various biometric template protection schemes are proposed to protect the biometric template from information leakage. The preponderance of existing proposals is based on Hamming metric, which ignores the fact that predominantly deployed biometric recognition systems (e.g. face, voice, gait) generate real-valued templates, more applicable to Euclidean metric and Cosine metric. Moreover, since the emergence of similarity-based attacks, those schemes are not secure under a stolen-token setting. In this paper, we propose a succinct biometric template protection scheme to address such a challenge. The proposed scheme is designed for Euclidean metric and Cosine metric instead of Hamming distance. Mainly, the succinct biometric template protection scheme consists of distance-preserving, one-way, and obfuscation modules. To be specific, we adopt location sensitive hash function to realize the distance-preserving and one-way properties simultaneously and use the modulo operation to implement many-to-one mapping. We also thoroughly analyze the proposed scheme in three aspects: irreversibility, unlinkability and revocability. Moreover, comprehensive experiments are conducted on publicly known face databases. All the results show the effectiveness of the proposed scheme.
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- 2023
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15. Macroscopic Electromagnetic Cooperative Network-Enhanced MXene/Ni Chains Aerogel-Based Microwave Absorber with Ultra-Low Matching Thickness
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Fei Pan, Yanping Rao, Dan Batalu, Lei Cai, Yanyan Dong, Xiaojie Zhu, Yuyang Shi, Zhong Shi, Yaowen Liu, and Wei Lu
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Electromagnetic wave absorption ,Ti3CNTx MXene ,Highly oriented Ni chains ,Electromagnetic cooperation ,Magnetic coupling ,Technology - Abstract
Abstract Electromagnetic cooperative strategy has been presented as a mainstream approach that can effectively optimize the matching thickness of dielectric loss dominant system. However, it is still challenging for dielectric–magnetic loss coexisting-type absorber to develop electromagnetic wave (EMW) performance with ultra-low matching thickness (≤ 1 mm). Breaking the limitation of traditional electromagnetic response at microscopic/mesoscopic scale, a ficus microcarpa-like magnetic aerogel with macroscopical electromagnetic cooperative effect was fabricated through highly oriented self-assembly engineering. The highly oriented Ni chains with unique macroscopic morphology (~ 1 cm in length) were achieved via a special magnetic field-induced growth. Strong magnetic coupling was observed in the Ni chains confirmed by the micromagnetic simulation. The deductive calculation validates that maintaining high value of electromagnetic parameters at high frequencies is the prerequisites of ultrathin absorber. The electromagnetic cooperative networks with uninterrupted and dual pathways spread through the entire aerogel skeleton, resulting in the impressive permittivity even at high frequencies. Consequently, the aerogel exhibits a remarkable EMW performance at an ultrathin thickness of 1 mm. Thus, based on the modulation of electromagnetic parameters, this work proposed a macroscopic ordered structure with the electromagnetic cooperative effect useful to develop a suitable strategy for achieving ultrathin EMW absorbers.
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- 2022
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16. Pharmacokinetic study of Strongylocentrotus nudus egg polysaccharide in rats and beagles using a 3H-labeling method
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Han Xing, Xiaojie Zhu, Jianmin Liao, Ying Kong, Yayuan Lu, Di Zhao, Ning Li, Xijing Chen, and Zhiying Qin
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Strongylocentrotus nudus egg polysaccharide ,3H-labeling method ,pharmacokinetics ,tritium ,beagles ,rats ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Strongylocentrotus nudus egg polysaccharide (SEP) extracted from sea urchins has potential anticancer activity. However, little is known about its pharmacokinetic properties. To investigate the pharmacokinetics of SEP, it was radiolabeled with tritium. Furthermore, a sensitive, selective, and rapid liquid scintillation counter (LSC) method for quantifying 3H-SEP in biological matrix was validated. The lower quantification limit of the method was 4 Bq. The relative standard deviations (RSDs) of the intra- and inter-day precision were
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- 2023
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17. Heterointerface Engineering of β-Chitin/Carbon Nano-Onions/Ni–P Composites with Boosted Maxwell-Wagner-Sillars Effect for Highly Efficient Electromagnetic Wave Response and Thermal Management
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Fei Pan, Lei Cai, Yuyang Shi, Yanyan Dong, Xiaojie Zhu, Jie Cheng, Haojie Jiang, Xiao Wang, Yifeng Jiang, and Wei Lu
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β-chitin ,Nano onion carbon ,Electromagnetic wave absorption ,Electromagnetic interference shielding ,Photothermal ,Technology - Abstract
Abstract The rational construction of microstructure and composition with enhanced Maxwell-Wagner-Sillars effect (MWSE) is still a challenging direction for reinforcing electromagnetic wave (EMW) absorption performance, and the related EMW attenuation mechanism has rarely been elucidated. Herein, MWSE boosted β-chitin/carbon nano-onions/Ni–P composites is prepared according to the heterointerface engineering strategy via facile layer-by-layer electrostatic assembly and electroless plating techniques. The heterogeneous interface is reinforced from the aspect of porous skeleton, nanomaterials and multilayer construction. The composites exhibit competitive EMW response mechanism between the conductive loss and the polarization/magnetic loss, as describing like the story of “The Hare and the Tortoise”. As a result, the composites not only achieve a minimum reflection loss (RLmin) of − 50.83 dB and an effective bandwidth of 6.8 GHz, but also present remarkable EMW interference shielding effectiveness of 66.66 dB. In addition, diverse functions such as good thermal insulation, infrared shielding and photothermal performance were also achieved in the hybrid composites as a result of intrinsic morphology and chemicophysics properties. Therefore, we believe that the boosted MWSE open up a novel orientation toward developing multifunctional composites with high-efficient EMW response and thermal management.
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- 2022
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18. The Assessment of Natural Cross Pollination Properties of a Novel Male-Sterile–Female-Fertile Mutation msLC01 in Soybean
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Wen Wang, Xiaojie Zhu, Yu Zhang, Huawei Gao, Zeru Zhang, Chunyan Yang, Yuhong Zheng, Qianqian Yu, Yixin Zhu, Yating Geng, Shulei Wang, and Like Liu
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soybean ,male sterility ,msLC01 ,natural outcrossing pollination ,Botany ,QK1-989 - Abstract
The value of a novel soybean male-sterile mutation msLC01 in breeding practice was determined by its outcrossing properties. Then, the effects of different planting arrangements on the pod set characteristics of male-sterile plants were assessed by using orthogonal experiments at two sites. At the same time, the effects of msLC01 male sterility on other traits were assessed in two C2F2 populations. In addition, the nectar secretion and natural outcross of male-sterile plants from four msLC01 lines were compared with one ms1 line and one ms6 line. The results of the orthogonal experiment showed that the pod numbers and pod set rates of male-sterile plants were decisively different between the two experimental sites but not between the two levels of the other factors. Both increasing the ratio of paternal parent to maternal parent and planting the parental seeds in a mixed way, the proportion of seeds pollinated by the target parent pollen could be increased. Except for the pod number per plant trait, there was no significant difference between male-sterile plants and their fertile siblings. The amount of nectar significantly differed among the lines. Compared with ms1 and ms6 male-sterile plants, the four msLC01 lines possessed significantly more or similar numbers of pod sets. The results of this study lay a foundation for the future use of this mutant in soybean breeding.
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- 2023
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19. Association between EPHA5 methylation status in peripheral blood leukocytes and the risk and prognosis of gastric cancer
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Xu Han, Tianyu Liu, Jiabao Zhai, Chang Liu, Wanyu Wang, Chuang Nie, Qi Wang, Xiaojie Zhu, Haibo Zhou, and Wenjing Tian
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Gastric cancer ,EPHA5 methylation ,Peripheral blood leukocytes ,Environmental factors ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Purpose Altered DNA methylation, genetic alterations, and environmental factors are involved in tumorigenesis. As a tumor suppressor gene, abnormal EPHA5 methylation was found in gastric cancer (GC) tissues and was linked to the initiation, progression and prognosis of GC. In this study, the EPHA5 methylation level in peripheral blood leukocytes (PBLs) was detected to explore its relationship with GC risk and prognosis. Methods A total of 366 GC cases and 374 controls were selected as the subjects of this study to collect their environmental factors, and the EPHA5 methylation status was detected through the methylation-sensitive high-resolution melting method. Logistic regression analysis was utilized to evaluate the associations among EPHA5 methylation, environmental factors and GC risk. Meanwhile, the propensity score (PS) was used to adjust the imbalance of some independent variables. Results After PS adjustment, EPHA5 Pm (positive methylation) was more likely to increase the GC risk than EPHA5 Nm (negative methylation) (ORb = 1.827, 95% CI [1.202–2.777], P = 0.005). EPHA5 Pm had a more significant association with GC risk in the elderly (ORa = 2.785, 95% CI [1.563–4.961], P = 0.001) and H. pylori-negative groups (ORa = 2.758, 95% CI [1.369–5.555], P = 0.005). Moreover, the combined effects of EPHA5 Pm and H. pylori infection (ORca = 3.543, 95% CI [2.233–5.621], P < 0.001), consumption of alcohol (ORca = 2.893, 95% CI [1.844–4.539], P < 0.001), and salty food intake (ORca = 4.018, 95% CI [2.538–6.362], P < 0.001) on increasing the GC risk were observed. In addition, no convincing association was found between EPHA5 Pm and the GC prognosis. Conclusions EPHA5 methylation in PBLs and its combined effects with environmental risk factors are related to the GC risk.
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- 2022
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20. Flexible and Waterproof 2D/1D/0D Construction of MXene-Based Nanocomposites for Electromagnetic Wave Absorption, EMI Shielding, and Photothermal Conversion
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Zhen Xiang, Yuyang Shi, Xiaojie Zhu, Lei Cai, and Wei Lu
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Ti3C2Tx ,CNTs ,Co ,Low-dimensional materials ,Electromagnetic wave absorption ,EMI shielding ,Technology - Abstract
Abstract High-performance electromagnetic wave absorption and electromagnetic interference (EMI) shielding materials with multifunctional characters have attracted extensive scientific and technological interest, but they remain a huge challenge. Here, we reported an electrostatic assembly approach for fabricating 2D/1D/0D construction of Ti3C2Tx/carbon nanotubes/Co nanoparticles (Ti3C2Tx/CNTs/Co) nanocomposites with an excellent electromagnetic wave absorption, EMI shielding efficiency, flexibility, hydrophobicity, and photothermal conversion performance. As expected, a strong reflection loss of -85.8 dB and an ultrathin thickness of 1.4 mm were achieved. Meanwhile, the high EMI shielding efficiency reached 110.1 dB. The excellent electromagnetic wave absorption and shielding performances were originated from the charge carriers, electric/magnetic dipole polarization, interfacial polarization, natural resonance, and multiple internal reflections. Moreover, a thin layer of polydimethylsiloxane rendered the hydrophilic hierarchical Ti3C2Tx/CNTs/Co hydrophobic, which can prevent the degradation/oxidation of the MXene in high humidity condition. Interestingly, the Ti3C2Tx/CNTs/Co film exhibited a remarkable photothermal conversion performance with high thermal cycle stability and tenability. Thus, the multifunctional Ti3C2Tx/CNTs/Co nanocomposites possessing a unique blend of outstanding electromagnetic wave absorption and EMI shielding, light-driven heating performance, and flexible water-resistant features were highly promising for the next-generation intelligent electromagnetic attenuation system. Highlights The 2D/1D/0D Ti3C2Tx/carbon nanotubes/Co nanocomposite is successfully synthesized via an electrostatic assembly. Nanocomposites exhibit an excellent electromagnetic wave absorption and a remarkable electromagnetic interference shielding efficiency. The flexible, waterproof, and photothermal conversion performances are achieved.
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- 2021
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21. Expression and Functional Analysis of AMT1 Gene Responding to High Ammonia Stress in Razor Clam (Sinonovacula constricta)
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Chenxin Hu, Wenfang Dai, Xiaojie Zhu, Hanhan Yao, Zhihua Lin, Yinghui Dong, and Liyuan Lv
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AMT1 ,Sinonovacula constricta ,ammonia excretion ,RNA interference ,gene expression ,SNP validation ,Veterinary medicine ,SF600-1100 ,Zoology ,QL1-991 - Abstract
Ammonium transporter 1 (AMT1), a member of ammonia (NH3/NH4+) transport proteins, has been found to have ammonia transport activity in plants and microorganisms. However, the functional characteristics and molecular mechanisms of AMT1 in mollusks remain unclear. The razor clam (Sinonovacula constricta) is a suitable model species to explore the molecular mechanism of ammonia excretion because of the high concentration of ambient ammonia it is exposed to in the clam–fish–shrimp polyculture system. Here, the expression of AMT1 in S. constricta (Sc-AMT1) in response to high ammonia (12.85 mmol/L NH4Cl) stress was identified by real-time quantitative PCR (qRT-PCR), Western blotting, RNA interference, and immunofluorescence analysis. Additionally, the association between the SNP_g.15211125A > T linked with Sc-AMT1 and ammonia tolerance was validated by kompetitive allele-specific PCR (KASP). A significant upregulated expression of Sc-AMT1 was observed during ammonia exposure, and Sc-AMT1 was found to be localized in the flat cells of gill. Moreover, the interference with Sc-AMT1 significantly upregulated the hemolymph ammonia levels, accompanied by the increased mRNA expression of Rhesus glycoprotein (Rh). Taken together, our findings imply that AMT1 may be a primary contributor to ammonia excretion in S. constricta, which is the basis of their ability to inhabit benthic water with high ammonia levels.
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- 2023
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22. Lotus Leaf-Derived Gradient Hierarchical Porous C/MoS2 Morphology Genetic Composites with Wideband and Tunable Electromagnetic Absorption Performance
- Author
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Fei Pan, Zhicheng Liu, Baiwen Deng, Yanyan Dong, Xiaojie Zhu, Chuang Huang, and Wei Lu
- Subjects
Morphology genetic materials ,Lotus leaf ,Electromagnetic wave absorption ,Gradient hierarchical porous structure ,Dielectric sum-quotient model ,Technology - Abstract
Abstract Inspired by the nature, lotus leaf-derived gradient hierarchical porous C/MoS2 morphology genetic composites (GHPCM) were successfully fabricated through an in situ strategy. The biological microstructure of lotus leaf was well preserved after treatment. Different pores with gradient pore sizes ranging from 300 to 5 μm were hierarchically distributed in the composites. In addition, the surface states of lotus leaf resulted in the Janus-like morphologies of MoS2. The GHPCM exhibit excellent electromagnetic wave absorption performance, with the minimum reflection loss of − 50.1 dB at a thickness of 2.4 mm and the maximum effective bandwidth of 6.0 GHz at a thickness of 2.2 mm. The outstanding performance could be attributed to the synergy of conductive loss, polarization loss, and impedance matching. In particularly, we provided a brand-new dielectric sum-quotient model to analyze the electromagnetic performance of the non-magnetic material system. It suggests that the specific sum and quotient of permittivity are the key to keep reflection loss below − 10 dB within a certain frequency range. Furthermore, based on the concept of material genetic engineering, the dielectric constant could be taken into account to seek for suitable materials with designable electromagnetic absorption performance.
- Published
- 2021
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23. Identification of Tumor Microenvironment and DNA Methylation-Related Prognostic Signature for Predicting Clinical Outcomes and Therapeutic Responses in Cervical Cancer
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Bangquan Liu, Jiabao Zhai, Wanyu Wang, Tianyu Liu, Chang Liu, Xiaojie Zhu, Qi Wang, Wenjing Tian, and Fubin Zhang
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tumor microenvironment ,DNA methylation ,prognostic model ,drug response ,immunotherapy response ,cervical cancer ,Biology (General) ,QH301-705.5 - Abstract
Background: Tumor microenvironment (TME) has been reported to have a strong association with tumor progression and therapeutic outcome, and epigenetic modifications such as DNA methylation can affect TMB and play an indispensable role in tumorigenesis. However, the potential mechanisms of TME and DNA methylation remain unclear in cervical cancer (CC).Methods: The immune and stromal scores of TME were generated by the ESTIMATE algorithm for CC patients in The Cancer Genome Atlas (TCGA) database. The TME and DNA methylation-related genes were identified by the integrative analysis of DNA promoter methylation and gene expression. The least absolute shrinkage and selection operator (LASSO) Cox regression was performed 1,000 times to further identify a nine-gene TME and DNA methylation-related prognostic signature. The signature was further validated in Gene Expression Omnibus (GEO) dataset. Then, the identified signature was integrated with the Federation International of Gynecology and Obstetrics (FIGO) stage to establish a composite prognostic nomogram.Results: CC patients with high immunity levels have better survival than those with low immunity levels. Both in the training and validation datasets, the risk score of the signature was an independent prognosis factor. The composite nomogram showed higher accuracy of prognosis and greater net benefits than the FIGO stage and the signature. The high-risk group had a significantly higher fraction of genome altered than the low-risk group. Eleven genes were significantly different in mutation frequencies between the high- and low-risk groups. Interestingly, patients with mutant TTN had better overall survival (OS) than those with wild type. Patients in the low-risk group had significantly higher tumor mutational burden (TMB) than those in the high-risk group. Taken together, the results of TMB, immunophenoscore (IPS), and tumor immune dysfunction and exclusion (TIDE) score suggested that patients in the low-risk group may have greater immunotherapy benefits. Finally, four drugs (panobinostat, lenvatinib, everolimus, and temsirolimus) were found to have potential therapeutic implications for patients with a high-risk score.Conclusions: Our findings highlight that the TME and DNA methylation-related prognostic signature can accurately predict the prognosis of CC and may be important for stratified management of patients and precision targeted therapy.
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- 2022
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24. Comparative Analysis on Proteomics Profiles of Intracellular and Extracellular M.tb and BCG From Infected Human Macrophages
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Han Liu, Li Su, Tingting Zhu, Xiaojie Zhu, Yifan Zhu, Yonchong Peng, Kailun Zhang, Longwei Wang, Changmin Hu, Huanchun Chen, Yingyu Chen, and Aizhen Guo
- Subjects
tuberculosis ,M.tb ,BCG ,proteomics ,macrophages ,virulence ,Genetics ,QH426-470 - Abstract
Tuberculosis is the second cause in infectious diseases leading to human death. Understanding the virulence mechanism is inevitable if the disease needs to be fully cured. Therefore, this study aimed to reveal this mechanism by comparing proteomic profiles of intracellular and extracellular virulent strain M.tb and bacille Calmette–Guérin (BCG) from infected THP-1cells. First, M.tb and BCG infected THP-1 at MOI 10:1. Twelve hours postinfection, intracellular bacteria of M.tb and BCG were collected, whereas the two bacilli cultured in 7H9 broth media were used as the control. Then four groups of bacilli were subjected to proteomic analysis, and differential proteomic profiles between M.tb and BCG were comparatively analyzed with bioinformatics tools. As a result, we identified a total of 1,557 proteins. Further, they were divided into four groups for comparison of M.tb versus BCG under 7H9 culture (shorten as out), M.tb in (intracellular) versus M.tb out, BCG in versus BCG out and M.tb in versus BCG in. Between M.tb in versus BCG in, a total of 211 differentially expressed proteins were found. Eight proteins like ESAT-6 distributed in six RDs and some known proteins related to virulence. Besides, five uncharacterized proteins were differentially expressed. Further analysis revealed enriched pathways were associated with glyoxylate and dicarboxylate metabolism pathways. In M.tb out versus BCG out, a total of 144 differential proteins were identified and mainly involved in metabolism pathways. Then, 121 differential proteins in the group of M.tb in versus M.tb out were enriched in ribosome and oxidative phosphorylation related to adaptation to the host environment. The group of BCG in versus BCG out shared the same trend of different pathways to the M.tb in versus M.tb out. Finally, 42 proteins were identified to be up-regulated only in intracellular M.tb including eight RD proteins, whereas 22 up-regulated uniquely in intracellular BCG. Besides, only two proteins (Pks13 and Rv1405c) were commonly up-regulated in intracellular M.tb and BCG. Further, some unknown proteins were uniquely up-regulated in the intracellular M.tb and BCG. These findings provide valuable data for further exploration of molecular mechanism for M.tb virulence and BCG immune response.
- Published
- 2022
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25. Comprehensive Analysis of an Individualized Immune-Related lncRNA Pair Signature in Gastric Cancer
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Chuang Nie, Jiabao Zhai, Qi Wang, Xiaojie Zhu, Guanghui Xiang, Chang Liu, Tianyu Liu, Wanyu Wang, Yimin Wang, Yashuang Zhao, Wenjing Tian, Yingwei Xue, and Haibo Zhou
- Subjects
long noncoding RNA ,immune ,gastric cancer ,prognostic signature ,immunotherapy ,Biology (General) ,QH301-705.5 - Abstract
Long noncoding RNAs (lncRNAs) have diverse functions, including immune regulation. Increasing studies have reported immune-related lncRNAs in the prognosis of multiple cancers. In this study, we developed an individualized signature containing 13 immune-related lncRNA pairs (IRLPs) which could predict the overall survival, disease-free survival, progression-free survival, and disease-specific survival of gastric cancer (GC) patients in The Cancer Genome Atlas (TCGA) cohort, and internal and external validations, signature comparisons, and subgroup analyses further confirmed its superiority, stability, and generalizability. Notably, this signature also showed good applicability in discriminating the prognosis of pan-cancer patients. Then, we constructed and validated a nomogram for overall survival based on the signature and clinical factors, which allowed more accurate predictions of GC prognosis. In addition, we revealed that the low survival rate of patients with high-risk scores may be due to their aggressive clinical features, enriched cancer-related signaling pathways, the infiltration of specific immunosuppressive cells, and low tumor mutation burden. We further predicted obviously worse immunotherapeutic responses in the high-risk groups and identified some candidate compounds targeting GC risk group differentiation. This signature based on the IRLPs may be promising for predicting the survival outcomes and immunotherapeutic responses of GC patients in clinical practice.
- Published
- 2022
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26. Mycobacterium tuberculosis Rv0309 Dampens the Inflammatory Response and Enhances Mycobacterial Survival
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Yongchong Peng, Xiaojie Zhu, Lin Gao, Jieru Wang, Han Liu, Tingting Zhu, Yifan Zhu, Xin Tang, Changmin Hu, Xi Chen, Huanchun Chen, Yingyu Chen, and Aizhen Guo
- Subjects
mycobacterium tuberculosis ,Rv0309 ,BCG_RS01790 ,mycobacterium bovis BCG ,inflammation ,pathogenesis ,Immunologic diseases. Allergy ,RC581-607 - Abstract
To reveal functions of novel Mycobacterium tuberculosis (M. tb) proteins responsible for modulating host innate immunity is essential to elucidation of mycobacterial pathogenesis. In this study, we aimed to identify the role of a putative protein Rv0309 encoded within RD8 of M. tb genome in inhibiting the host inflammatory response and the underlying mechanism, using in-vitro and in-vivo experiments. A recombinant M. smegmatis strain Ms_rv0309 expressing Rv0309 and a mutant Bacillus Calmette-Guérin (BCG)ΔRS01790 strain with deletion of BCG_RS01790, 100% homologue of Rv0309 in BCG, were constructed. Rv0309 was found to localize in the cell wall and be able to decrease cell wall permeability. Purified recombinant rRv0309 protein inhibited lipopolysaccharide-induced IL-6 release in RAW264.7 cells. BCG_RS01790 in BCG or Rv0309 in Ms_rv0309 strain greatly inhibited production of IL-6, IL-1β, and TNF-α in RAW264.7 cells. Similarly, BCGΔRS01790 strongly induced expression of these cytokines compared with wild-type BCG and complement strain, cBCGΔRS01790::RS01790. Further BCG_RS01790 or Rv0309 suppressed cytokine production through NF-κB p65/IκBα and MAPK ERK/JNK signaling. Importantly, BCG_RS01790 in BCG and Rv0309 in Ms_rv0309 strain enhanced mycobacterial survival in macrophages. Mice infected with BCGΔRS01790 exhibited high levels of IFN-γ, TNF-α and IL-1β, and large numbers of neutrophils and lymphocytes in the early stage, and minimal lung bacterial load and inflammatory damage in late stage of the experiment. In conclusion, the cell wall protein Rv0309 or BCG_RS01790 enhanced mycobacterial intracellular survival after infection likely through inhibition of the pro-inflammatory response and decrease of bacterial cell wall permeability, thereby contributing to mycobacterial pathogenesis.
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- 2022
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27. Rapid and Easy-Read Porcine Circovirus Type 4 Detection with CRISPR–Cas13a-Based Lateral Flow Strip
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Jieru Wang, Xiaojie Zhu, Dongdong Yin, Chang Cai, Hailong Liu, Yuqing Yang, Zishi Guo, Lei Yin, Xuehuai Shen, Yin Dai, and Xiaocheng Pan
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porcine circovirus 4 ,CRISPR–Cas13a ,RPA ,LFD ,rapid detection ,Biology (General) ,QH301-705.5 - Abstract
First identified as a new circovirus in Hunan Province in China in 2019, porcine circovirus (PCV4) is now widely detected in other Chinese provinces and South Korea. In recent years, the virus has threatened pig health and operations in the pig industry. Hence, early PCV4 detection and regular surveillance are required to control the spread of infection and prevent collateral damage to the industry. Due to PCV4 being difficult to isolate in vitro, molecular detection methods, such as conventional PCR and real-time PCR, and serological assays are currently the main methods used for the detection of PCV4 infection. However, they are time-consuming, labor-intensive, and complex and require professional personnel. To facilitate rapid pen-side PCV4 diagnoses, we used clustered regularly interspaced short palindromic repeats (CRISPR) and Cas13a technology to develop a quick testing kit. Five recombinase-aided amplification (RPA) primer sets were designed based on the conserved PCV4-Cap gene nucleotide region, which were used to determine several key lateral flow strip (LFD) characteristics (sensitivity, specificity, and accuracy). The results showed that the RPA-Cas13a-LFD reaction could detect PCV4 within 1.5 h in genomic DNA harboring a minimum of a single copy. Furthermore, the assay showed good specificity and absence of cross-reactivity with PCV2, PCV3, or other porcine viruses. When we tested 15 clinical samples, a high accuracy was also recorded. Therefore, we successfully developed a detection assay that was simple, fast, accurate, and suitable for on-site PCV4 testing.
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- 2023
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28. An Abattoir-Based Study on the Prevalence of Salmonella Fecal Carriage and ESBL Related Antimicrobial Resistance from Culled Adult Dairy Cows in Wuhan, China
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Jie Wang, Kaili Xue, Ping Yi, Xiaojie Zhu, Qingjie Peng, Zijian Wang, Yongchong Peng, Yingyu Chen, Ian D. Robertson, Xiang Li, Aizhen Guo, and Joshua W. Aleri
- Subjects
blaCTX-M gene ,slaughterhouse surveillance ,S. Typhimurium ,Medicine - Abstract
The objective of this study was to estimate the fecal carriage of Salmonella spp. among culled adult dairy cows presented to an abattoir in Wuhan, China and to evaluate their antimicrobial resistance profiles. Rectal swabs from 138 culled cows were cultured. Laboratory analysis involved the identification of Salmonella, the susceptibility assessment and the presence of Extended Spectrum β-lactamases and mcr genes in the isolates. An overall prevalence of Salmonella of 29.0% was recorded with 63.4% (26/41) and 2.4% (1/41) of the isolates identified as S. Typhimurium and S. Dublin, respectively. The occurrence of Salmonella was higher (odd ratios: 3.3) in culled cows originating from the northeast zone of China than cows originating from the central and north zones. Twenty multi-drug resistant strains (resistant to three or more antimicrobial agents) were detected (48.8%) and overall, a high resistance to ampicillin (36/41) and tetracycline (15/41) was observed. Extended Spectrum β-lactamases phenotypes were found in 7/41 isolates, of which all contained the blaCTX-M resistance gene, and no mcr genes were found by polymerase chain reaction. The high prevalence of Salmonella fecal carriage and antimicrobial resistance may contribute to an increased risk of Salmonella transmission to food.
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- 2020
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29. Mycobacterium tuberculosis YrbE3A Promotes Host Innate Immune Response by Targeting NF-κB/JNK Signaling
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Jieru Wang, Xiaojie Zhu, Yongchong Peng, Tingting Zhu, Han Liu, Yifan Zhu, Xuekai Xiong, Xi Chen, Changmin Hu, Huanchun Chen, Yingyu Chen, and Aizhen Guo
- Subjects
Mycobacterium tuberculosis ,YrbE3A ,macrophages ,proinflammatory cytokines ,signaling pathways ,Biology (General) ,QH301-705.5 - Abstract
Mycobacterium tuberculosis is considered a successful pathogen with multiple strategies to undermine host immunity. The YrbE3A is encoded by Rv1964 within the RD15 region present in the genome of Mtb, but missing in M. bovis, M. bovis BCG (Pasteur) strain, and M. smegmatis (Ms). However, little is known about its function. In this study, the YrbE3A gene was cloned into pMV261 and expressed in Ms and BCG, while the strains with the vector served as the controls. The YrbE3A was expressed on the mycobacterial membrane, and the purified protein could stimulate RAW264.7 cells to produce IL-6. Furthermore, the effect of the recombinant strains on cytokine secretion by RAW264.7 was confirmed, which varied with the host strains. Ms_YrbE3A increased significantly higher levels of TNF-α and IL-6 than did Ms_vec, while BCG_YrbE3A enhanced higher TNF-α than BCG_vec. The pathways associated with NF-κB p65 and MAPK p38/JNK, other than Erk1/2, regulated this process. In addition, mice were infected with Ms_YrbE3A and Ms-vec and were kinetically examined. Compared to Ms-vec, Ms_YrbE3A induced more serious inflammatory damage, higher levels of TNF-α and IL-6, higher numbers of lymphocytes, neutrophils, and monocytes in a time-dependent way, but lower lung bacterial load in lung. These findings may contribute to a better understanding of Mtb pathogenesis.
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- 2020
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30. Upregulation of Cytokines and Differentiation of Th17 and Treg by Dendritic Cells: Central Role of Prostaglandin E2 Induced by Mycobacterium bovis
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Han Liu, Xuekai Xiong, Wenjun Zhai, Tingting Zhu, Xiaojie Zhu, Yifan Zhu, Yongchong Peng, Yongliang Zhang, Jieru Wang, Huanchun Chen, Yingyu Chen, and Aizhen Guo
- Subjects
mycobacterium bovis ,pge2 ,cox-2 ,dendritic cells ,th17 ,treg ,bcg ,Biology (General) ,QH301-705.5 - Abstract
Mycobacterium bovis (M. bovis) is a zoonotic pathogen that causes bovine and human tuberculosis. Dendritic cells play a critical role in initiating and regulating immune responses by promoting antigen-specific T-cell activation. Prostaglandin E2 (PGE2)-COX signaling is an important mediator of inflammation and immunity and might be involved in the pathogenesis of M. bovis infection. Therefore, this study aimed to reveal the character of PGE2 in the differentiation of naïve CD4+ T cells induced by infected dendritic cells (DCs). Murine bone marrow-derived DCs were pre-infected with M. bovis and its attenuated strain M. bovis bacillus Calmette-Guérin (BCG). Then, the infected DCs were co-cultured with naïve CD4+ T cells with or without the cyclooxygenase (COX) inhibitor indomethacin. Quantitative RT-PCR analysis and protein detection showed that PGE2/COX-2 signaling was activated, shown by the upregulation of PGE2 production as well as COX-2 and microsomal PGE2 synthase (mPGES1) transcription in DCs specifically induced by M. bovis and BCG infection. The further co-culture of infected DCs with naïve CD4+ T cells enhanced the generation of inflammatory cytokines IL-17 and IL-23, while indomethacin suppressed their production. Following this, the differentiation of regulatory T cells (Treg) and Th17 cell subsets was significantly induced by the infected DCs rather than uninfected DCs. Meanwhile, M. bovis infection stimulated significantly higher levels of IL-17 and IL-23 and the differentiation of Treg and Th17 cell subsets, while BCG infection led to higher levels of TNF-α and IL-12, but lower proportions of Treg and Th17 cells. In mice, M. bovis infection generated more bacterial load and severe abnormalities in spleens and lungs, as well as higher levels of COX-2, mPGE2 expression, Treg and Th17 cell subsets than BCG infection. In conclusion, PGE2/COX-2 signaling was activated in DCs by M. bovis infection and regulated differentiation of Treg and Th17 cell subsets through the crosstalk between DCs and naive T cells under the cytokine atmosphere of IL-17 and IL-23, which might contribute to M. bovis pathogenesis in mice.
- Published
- 2020
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31. Dynamic Responses of a Metro Train-Bridge System under Train-Braking: Field Measurements and Data Analysis
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Xuhui He, Kehui Yu, Chenzhi Cai, Yunfeng Zou, and Xiaojie Zhu
- Subjects
elevated metro line ,train-bridge system ,acceleration ,choi-williams distribution ,wavelet coherence ,Chemical technology ,TP1-1185 - Abstract
This paper focuses on the dynamic responses of a metro train−bridge system under train-braking. Experiments were performed on the elevated Metro Line 21 of Guangzhou (China). A continuous, three-span, rigid-frame bridge (42 m + 65 m + 42 m) and a standard B-type metro train were selected. The acceleration signals were measured at the center-points of the main span and one side-span, and the acceleration signals of the car body and the bogie frame were measured simultaneously. The train−bridge system’s vibration characteristics and any correlations with time and frequency were investigated. The Choi−Williams distribution method and wavelet coherence were introduced to analyze the obtained acceleration signals of the metro train−bridge system. The results showed that the Choi−Williams distribution provided a more explicit understanding of the time−frequency domain. The correlations between different parts of the bridge and the train−bridge system under braking conditions were revealed. The present study provides a series of measured dynamic responses of the metro train−bridge system under train-braking, which could be used as a reference in further investigations.
- Published
- 2020
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32. Comparative Genomics of a Bovine Mycobacterium tuberculosis Isolate and Other Strains Reveals Its Potential Mechanism of Bovine Adaptation
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Xuekai Xiong, Rui Wang, Dachuan Deng, Yingyu Chen, Han Liu, Tianqi Wang, Jieru Wang, Xiaojie Zhu, Xifang Zhu, Yongqiang Zhu, Xinyan Lu, Huanchun Chen, Huajun Zheng, and Aizhen Guo
- Subjects
Mycobacterium tuberculosis ,genome ,sequencing ,cattle ,zoonosis ,tuberculosis ,Microbiology ,QR1-502 - Abstract
The Mycobacterium tuberculosis complex causes tuberculosis (TB) in humans and other animal species, but Mycobacterium tuberculosis has a distinct host preference to humans. The present study aimed to determine whether a bovine M. tb strain 1458 has evolved some genetic properties in their genome that might be associated with their bovine adaptation. The genome of the M. tb strain 1458 was sequenced and subjected to an extensive comparative genomic analysis. A phylogenetic analysis showed that strain 1458 is most closely related to a Chinese M. tb strain, CCDC5079, of the same Beijing family. Compared with three human M. tb Beijing family strains, the strain 1458 has the fewest unique genes. However, there are most (21) IS6110 insertion sequences in the strain 1458 genome at either intragenic or intergenic sites, resulting in the interruption of 11 genes including three PPE family-encoding genes (PPE16, PPE38, and PPE59). Only the strain 1458 genome has the upstream insertion in esxS and phoP genes. PCR confirmed four upstream insertions and qPCR determined that transcription of esxS, phoP, dnaN, and ctpD genes differed significantly between M. tb strain 1458 and H37Rv or M. bovis. A Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis revealed that the genes affected by non-synonymous SNPs are enriched in RNA polymerase. Moreover, 127 of the 133 unique SNPs in strain 1458 are either different to those in the M. bovis genome. In conclusion, some critical genes responsible for bacterial virulence and immunogenicity were interrupted in the genome of bovine M. tb strain 1458 by IS insertions and non-synonymous SNPs, which might contribute to its bovine adaptation, and the modification of its virulence and immunogenicity in cattle.
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- 2017
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33. Approaches for Identification of HIV-1 Entry Inhibitors Targeting gp41 Pocket
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Asim K. Debnath, Shibo Jiang, Xiaojie Zhu, Lanying Du, Fei Yu, and Lu Lu
- Subjects
HIV-1 ,gp41 ,HIV fusion/entry inhibitors ,small molecule compounds ,hydrophobic pocket ,Microbiology ,QR1-502 - Abstract
The hydrophobic pocket in the HIV-1 gp41 N-terminal heptad repeat (NHR) domain plays an important role in viral fusion and entry into the host cell, and serves as an attractive target for development of HIV-1 fusion/entry inhibitors. The peptide anti-HIV drug targeting gp41 NHR, T-20 (generic name: enfuvirtide; brand name: Fuzeon), was approved by the U.S. FDA in 2003 as the first HIV fusion/entry inhibitor for treatment of HIV/AIDS patients who fail to respond to the current antiretroviral drugs. However, because T20 lacks the pocket-binding domain (PBD), it exhibits low anti-HIV-1 activity and short half-life. Therefore, several next-generation HIV fusion inhibitory peptides with PBD have been developed. They possess longer half-life and more potent antiviral activity against a broad spectrum of HIV-1 strains, including the T-20-resistant variants. Nonetheless, the clinical application of these peptides is still limited by the lack of oral availability and the high cost of production. Thus, development of small molecule compounds targeting the gp41 pocket with oral availability has been promoted. This review describes the main approaches for identification of HIV fusion/entry inhibitors targeting the gp41 pocket and summarizes the latest progress in developing these inhibitors as a new class of anti-HIV drugs.
- Published
- 2013
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34. PagPassGPT: Pattern Guided Password Guessing via Generative Pretrained Transformer.
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Xingyu Su, Xiaojie Zhu, Yang Li, Yong Li, Chi Chen, and Paulo Jorge Esteves Veríssimo
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- 2024
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35. Goldfish: An Efficient Federated Unlearning Framework.
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Houzhe Wang, Xiaojie Zhu, Chi Chen, and Paulo Esteves-Veríssimo
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- 2024
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36. Heterogeneous Spatio-Temporal Series Forecasting Using Dynamic Graph Neural Networks for Flood Prediction.
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Jiange Jiang, Chen Chen, Long Wang, Hailong Hou, Congjian Deng, Ying Ju, and Xiaojie Zhu
- Published
- 2024
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37. Novel Natural Angiotensin Converting Enzyme (ACE)-Inhibitory Peptides Derived from Sea Cucumber-Modified Hydrolysates by Adding Exogenous Proline and a Study of Their Structure–Activity Relationship
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Jianpeng Li, Zunying Liu, Yuanhui Zhao, Xiaojie Zhu, Rilei Yu, Shiyuan Dong, and Haohao Wu
- Subjects
sea cucumber ,ACE-inhibitory peptide ,molecular docking ,structure-activity relationship ,plastein reaction ,Biology (General) ,QH301-705.5 - Abstract
Natural angiotensin converting enzyme (ACE)-inhibitory peptides, which are derived from marine products, are useful as antihypertensive drugs. Nevertheless, the activities of these natural peptides are relatively low, which limits their applications. The aim of this study was to prepare efficient ACE-inhibitory peptides from sea cucumber-modified hydrolysates by adding exogenous proline according to a facile plastein reaction. When 40% proline (w/w, proline/free amino groups) was added, the modified hydrolysates exhibited higher ACE-inhibitory activity than the original hydrolysates. Among the modified hydrolysates, two novel efficient ACE-inhibitory peptides, which are namely PNVA and PNLG, were purified and identified by a sequential approach combining a sephadex G-15 gel column, reverse-phase high-performance liquid chromatography (RP-HPLC) and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF/MS), before we conducted confirmatory studies with synthetic peptides. The ACE-inhibitory activity assay showed that PNVA and PNLG exhibited lower IC50 values of 8.18 ± 0.24 and 13.16 ± 0.39 μM than their corresponding truncated analogs (NVA and NLG), respectively. Molecular docking showed that PNVA and PNLG formed a larger number of hydrogen bonds with ACE than NVA and NLG, while the proline at the N-terminal of peptides can affect the orientation of the binding site of ACE. The method developed in this study may potentially be applied to prepare efficient ACE-inhibitory peptides, which may play a key role in hypertension management.
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- 2018
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38. FAV-BFT: An Efficient File Authenticity Verification Protocol for Blockchain-Based File-Sharing System.
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Shuai Su, Chi Chen, and Xiaojie Zhu
- Published
- 2022
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39. User-centric Service System for Network beyond IMT-2020 (5G).
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Zhan Liu, Xiaojie Zhu, Peng Li, Jinlan Ma, Xiaozhi Yuan, Yuxiang Jiang, and Qingyang Wang
- Published
- 2022
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40. A data sharing method for internet of drones based on federated learning.
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Hui Li 0067, Hailing Zhang, Dan Liao, Xiaojie Zhu, Yueyue Dai, and Sahil Verma
- Published
- 2022
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41. Exipnos: An Efficient Verifiable Dynamic Symmetric Searchable Encryption Scheme with Forward and Backward Privacy.
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Najwa Aaraj, Chiara Marcolla, and Xiaojie Zhu
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- 2021
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42. An Optimization Model for Restructuring Distribution Network Considering Connecting Constraints of DGs.
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Xiangyang Gong, Yinshu Yu, Liang Huang, Xiaojie Zhu, and Weiyan Qian
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- 2019
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43. Privacy-Preserving Relevance Ranking Scheme and Its Application in Multi-keyword Searchable Encryption.
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Peisong Shen, Chi Chen 0001, and Xiaojie Zhu
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- 2017
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44. An overview of interactive immersive services
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Xiaozhi Yuan, Qingyang Wang, Linfeng Zhang, Li Peng, Xiaojie Zhu, Jinlan Ma, Zhan Liu, and Yuxiang Jiang
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Computer Networks and Communications ,Electrical and Electronic Engineering - Published
- 2023
45. Towards Metaverse with Diversified Applications: Service Native Architecture
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Yuxiang Jiang, Li Peng, Xiaojie Zhu, Jinlan Ma, Xiaozhi Yuan, Zhan Liu, and Qingyang Wang
- Abstract
With the advancement of science and technology, Metaverse will empower the entity economy and social development, and stimulate the development potential of industries such as smart city. The current chimney-style application creation process is cumbersome, which cannot support the application diversification and efficient, flexible and open service provision methods, so it cannot meet the needs of the rapid development of the Metaverse. By introducing a service engine layer that encapsulates basic service capabilities, this research proposes a Metaverse application architecture based on service native, which has characteristics of function scalability, orchestration automation, system openness, full-type access, etc. The basic service capabilities based on this architecture can support diverse needs of Metaverse applications.
- Published
- 2022
46. Risk factors associated with cardiovascular mortality among gastric cancer patients: a population-based analysis
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Jing Wang, Qi Wang, Xinyu Du, Xiaojie Zhu, Chuang Nie, Xu Han, Wenjing Tian, He Li, and Haibo Zhou
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Male ,Cancer Research ,Oncology ,Stomach Neoplasms ,Cardiovascular Diseases ,Risk Factors ,Humans ,Female ,Radiology, Nuclear Medicine and imaging ,General Medicine ,Marriage ,Proportional Hazards Models ,SEER Program - Abstract
Background Cancer patients were found at a high risk of death from cardiovascular disease. This study aims to assess cardiovascular mortality risk and identify the potential risk factors associated with cardiovascular mortality among gastric cancer patients. Methods Gastric cancer patients were collected from the Surveillance Epidemiology and End Results database during 1975–2016. Standardized mortality ratios were calculated to compare cardiovascular mortality rates between gastric cancer patients and the general US population. Univariable Cox analysis and multivariable stepwise Cox analysis were adopted to identify the potential risk factors for cardiovascular disease death after gastric cancer diagnosis. Results There were 10 886 cardiovascular disease deaths identified among 165 433 individuals with gastric cancer observed for 410207.20 person-years. Gastric cancer patients were at a higher cardiovascular disease mortality risk (standardized mortality ratio = 3.35, 95% confidence interval: 3.24–3.47, P 80 years vs. 0–69 years, hazard ratio = 7.05, 95% confidence interval: 6.66–7.46, P Conclusions Gastric cancer patients were at an increased risk of cardiovascular disease death. Older age at diagnosis, male sex, black race, without a partner, living in the northern plains and surgery not performed were significantly associated with cardiovascular disease death after gastric cancer diagnosis.
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- 2022
47. Supplemental Figures S1-S6 and Table S1 from Apratoxin A Shows Novel Pancreas-Targeting Activity through the Binding of Sec 61
- Author
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Kenichi Nomoto, Mary Woodall-Jappe, Toshimitsu Uenaka, William H. Gerwick, Yoshihiko Kotake, Hajime Shimizu, Xiaojie Zhu, Hyeong-wook Choi, Steven Mathieu, Kuo-Ming Wu, Yongchun Shen, Karen Tendyke, Sergei Agoulnik, Krista Condon, Donna Kolber-Simonds, Sandeep Akare, Yimin Jiang, Zhihong Chen, and Kuan-Chun Huang
- Abstract
Figure S1. Synthesis of [3H]apratoxin A. Figure S2. Synthesis of C.18-epi-apratoxin A. Figure S3. Apratoxin A in vitro IC50 against panels of human cancer cell lines. Table S1. Summary table for in vivo efficacy studies. Figure S4. Apratoxin A concentration kinetics in plasma and various tissues in A549 human lung cancer xenograft tumor-bearing mice after a single IV dose (1 mg/kg). Figure S5. Apratoxin A and HUN-7293 have different binding sites on the Sec61 complex. Figure S6. Sec61α and Sec61β protein expression levels among different cell lines.
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- 2023
48. Data from Apratoxin A Shows Novel Pancreas-Targeting Activity through the Binding of Sec 61
- Author
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Kenichi Nomoto, Mary Woodall-Jappe, Toshimitsu Uenaka, William H. Gerwick, Yoshihiko Kotake, Hajime Shimizu, Xiaojie Zhu, Hyeong-wook Choi, Steven Mathieu, Kuo-Ming Wu, Yongchun Shen, Karen Tendyke, Sergei Agoulnik, Krista Condon, Donna Kolber-Simonds, Sandeep Akare, Yimin Jiang, Zhihong Chen, and Kuan-Chun Huang
- Abstract
Apratoxin A is a natural product with potent antiproliferative activity against many human cancer cell lines. However, we and other investigators observed that it has a narrow therapeutic window in vivo. Previous mechanistic studies have suggested its involvement in the secretory pathway as well as the process of chaperone-mediated autophagy. Still the link between the biologic activities of apratoxin A and its in vivo toxicity has remained largely unknown. A better understanding of this relationship is critically important for any further development of apratoxin A as an anticancer drug. Here, we describe a detailed pathologic analysis that revealed a specific pancreas-targeting activity of apratoxin A, such that severe pancreatic atrophy was observed in apratoxin A–treated animals. Follow-up tissue distribution studies further uncovered a unique drug distribution profile for apratoxin A, showing high drug exposure in pancreas and salivary gland. It has been shown previously that apratoxin A inhibits the protein secretory pathway by preventing cotranslational translocation. However, the molecule targeted by apratoxin A in this pathway has not been well defined. By using a 3H-labeled apratoxin A probe and specific Sec 61α/β antibodies, we identified that the Sec 61 complex is the molecular target of apratoxin A. We conclude that apratoxin A in vivo toxicity is likely caused by pancreas atrophy due to high apratoxin A exposure. Mol Cancer Ther; 15(6); 1208–16. ©2016 AACR.
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- 2023
49. Supplemental Figure Legends from Apratoxin A Shows Novel Pancreas-Targeting Activity through the Binding of Sec 61
- Author
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Kenichi Nomoto, Mary Woodall-Jappe, Toshimitsu Uenaka, William H. Gerwick, Yoshihiko Kotake, Hajime Shimizu, Xiaojie Zhu, Hyeong-wook Choi, Steven Mathieu, Kuo-Ming Wu, Yongchun Shen, Karen Tendyke, Sergei Agoulnik, Krista Condon, Donna Kolber-Simonds, Sandeep Akare, Yimin Jiang, Zhihong Chen, and Kuan-Chun Huang
- Abstract
Figure S1. Synthesis of [3H]apratoxin A. Figure S2. Synthesis of C.18-epi-apratoxin A. Figure S3. Apratoxin A in vitro IC50 against panels of human cancer cell lines. Table S1. Summary table for in vivo efficacy studies. Figure S4. Apratoxin A concentration kinetics in plasma and various tissues in A549 human lung cancer xenograft tumor-bearing mice after a single IV dose (1 mg/kg). Figure S5. Apratoxin A and HUN-7293 have different binding sites on the Sec61 complex. Figure S6. Sec61α and Sec61β protein expression levels among different cell lines.
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- 2023
50. Supplementary Figures S1-S4 from Eribulin Induces Irreversible Mitotic Blockade: Implications of Cell-Based Pharmacodynamics for In vivo Efficacy under Intermittent Dosing Conditions
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Bruce A. Littlefield, Melvin J. Yu, Yoshito Kishi, Bryan M. Lewis, Xiaojie Zhu, Boris M. Seletsky, Wanjun Zheng, Kimberley K. Aalfs, Bruce F. Wels, Kathleen A. Salvato, and Murray J. Towle
- Abstract
Supplementary Figures S1-S4.
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- 2023
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