112 results on '"Xianwei, Yang"'
Search Results
2. Integrity Auditing for Multi-Copy in Cloud Storage Based on Red-Black Tree
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Zhenpeng Liu, Yi Liu, Xianwei Yang, and Xiaofei Li
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Cloud storage ,data integrity auditing ,red-black tree ,dynamic data update ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
With the rapid development of cloud storage, cloud users are willing to store data in the cloud storage system, and at the same time, the requirements for the security, integrity, and availability of data storage are getting higher and higher. Although many cloud audit schemes have been proposed, the data storage overhead is too large and the data cannot be dynamically updated efficiently when most of the schemes are in use. In order to solve these problems, a cloud audit scheme for multi-copy dynamic data integrity based on red-black tree full nodes is proposed. This scheme uses ID-based key authentication, and improves the classic Merkel hash tree MHT to achieve multi-copy storage and dynamic data manipulation, which improves the efficiency of real-time dynamic data update (insertion, deletion, modification). The third-party audit organization replaces users to verify the integrity of data stored on remote cloud servers, which reduces the computing overhead and system communication overhead. The security analysis proves that the security model based on the CDH problem and the DL problem is safe. Judging from the results of the simulation experiment, the scheme is safe and efficient.
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- 2021
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3. Multiple recurrent cystic hydatid disease of abdominal cavity
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Xianwei Yang, Tao Huang, and Wentao Wang
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Surgery ,RD1-811 - Published
- 2022
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4. Comprehensive Molecular Analyses of a Macrophage-Related Gene Signature With Regard to Prognosis, Immune Features, and Biomarkers for Immunotherapy in Hepatocellular Carcinoma Based on WGCNA and the LASSO Algorithm
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Tao Wang, Liqun Dai, Shu Shen, Yi Yang, Ming Yang, Xianwei Yang, Yiwen Qiu, and Wentao Wang
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macrophage-related genes ,hepatocellular carcinoma (HCC) ,immunity ,prognosis ,immune drug response ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Macrophages have been reported to exert a crucial role in hepatocellular carcinoma (HCC). This study aimed to explore the macrophage-related genes and establish a macrophage-related signature (MRS) model to predict the overall survival (OS) of patients with HCC based on these genes’ expression. We screened the macrophage-related gene module by weighted gene coexpression network analysis (WGCNA), the least absolute shrinkage and selection operator (LASSO) Cox regression analysis was utilized for further selection, and the selected genes were entered into stepwise regression to develop the MRS model, which was further validated in the Gene Expression Omnibus (GEO) and International Cancer Genome Consortium (ICGC) datasets. We analyzed the biological phenotypes associated with macrophages in terms of functional enrichment, tumor immune signature, and tumor mutational signature. The patient’s response to immunotherapy was inferred by the tumor immune dysfunction and exclusion (TIDE) score, the immunophenotype score (IPS), and the IMvigor210 dataset. A novel MRS model was established based on the LASSO regression coefficients of the genes PON1, IL15RA, NEIL3, HILPDA, PFN2, HAVCR1, ANXA10, CDCA8, EPO, S100A9, TTK, KLRB1, SPP1, STC2, CYP26B1, GPC1, G6PD, and CBX2. In either dataset, MRS was identified as an independent risk factor for OS in HCC patients. Additionally, our research indicated that a high-risk score in the MRS model was significantly correlated with tumor staging, pathological grade, tumor–node–metastasis (TNM) stage, and survival. Several genes of the human leukocyte antigen (HLA) family and immune checkpoints were highly expressed in the high-risk group. In addition, the frequency of tumor mutations was also higher in the high-risk group. According to our analyses, a higher risk score in the MRS model may predict a better response to immunotherapy.
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- 2022
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5. Expression and serodiagnostic efficacy of a novel echinococcosis-specific recombinant fusion antigen rAgB8/1-Em18-Eg95
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Xianwei, Yang, primary, Tao, Wang, additional, Wentao, Wang, additional, and Yin, Chen, additional
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- 2023
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6. Resection of retrohepatic inferior vena cava without reconstruction in ex vivo liver resection and autotransplantation: a retrospective study
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Xianwei Yang, Tao Wang, Junjie Kong, Bin Huang, and Wentao Wang
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Hepatic alveolar echinococcosis ,Inferior vena cava ,Liver autotransplantation ,Reconstruction ,Surgery ,RD1-811 - Abstract
Abstract Background Retrohepatic inferior vena cava (RIVC) resection without reconstruction in ex vivo liver resection and autotransplantation (ERAT) for advanced alveolar echinococcosis (HAE) is unclear. Methods This is a retrospective study of consecutive patients referred to our hospital from 2014 to 2018. Depending on the presence of a rich collateral circulation and stable blood volume in ERAT, patients did not rebuild the RIVC. Then, patients were selected some appropriate revascularization techniques for the hepatic and renal veins. Finally, all ERAT procedures were completed, and short- and long-term outcomes were observed. Results Five advanced HAE patients underwent ERAT without RIVC reconstruction. One patient died of circulatory failure 1 day after surgery. Another four patients, with a median follow-up duration of 18 months (range, 10–25 months), demonstrated normal liver and kidney function, no thrombosis and no HAE recurrence. Conclusions Through the long-term results of ERAT, the pros and cons of not reconstructing the RIVC need to be re-examined. In cases with a rich collateral circulation, the RIVC cannot be reconstructed. However, in cases requiring the resection of multiple organs, RIVC without reconstruction was prudential.
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- 2020
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7. Evolutionary selection of biofilm-mediated extended phenotypes in Yersinia pestis in response to a fluctuating environment
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Yujun Cui, Boris V. Schmid, Hanli Cao, Xiang Dai, Zongmin Du, W. Ryan Easterday, Haihong Fang, Chenyi Guo, Shanqian Huang, Wanbing Liu, Zhizhen Qi, Yajun Song, Huaiyu Tian, Min Wang, Yarong Wu, Bing Xu, Chao Yang, Jing Yang, Xianwei Yang, Qingwen Zhang, Kjetill S. Jakobsen, Yujiang Zhang, Nils Chr. Stenseth, and Ruifu Yang
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Science - Abstract
Yersinia pestis, the causative agent of plague, can change its biofilm production to influence the dynamics of flea-borne transmission. Here, the authors sequence Y. pestis isolates sampled over 40 years in China and show evidence for climate-associated selection on rpoZ to increase biofilm production.
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- 2020
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8. Learning Curve of Ex Vivo Liver Resection and Autotransplantation in Treating End-Stage Hepatic Alveolar Echinococcosis: A RA-CUSUM Analysis
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Yiwen Qiu, Xianwei Yang, Tao Wang, Shu Shen, Yi Yang, Bin Huang, and Wentao Wang
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risk-adjusted cumulative sum analysis ,autotransplantation ,liver transplantation ,living donor ,ex vivo resection ,alveolar echinococcosis ,Surgery ,RD1-811 - Abstract
Background: This retrospective study aimed to evaluate the safety and learning curve of ex vivo liver resection and autotransplantation (ELRA).Methods: A total of 102 consecutive end-stage HAE patients who underwent ELRA between 2014 and 2020 in West China Hospital were enrolled. The primary endpoint was major postoperative complications (comprehensive complication index, CCI > 26). The ELRA learning curve was evaluated using risk-adjusted cumulative sum (RA-CUSUM) methods. The learning phases were determined based on RA-CUSUM analysis and tested for their association with intra- and post-operative endpoints.Results: The median surgery time was 738 (659–818) min, with a median blood loss of 2,250 (1,600–3,000) ml. The overall incidence of major morbidity was 38.24% (39/102). Risk-adjusted cumulative sum analysis demonstrated a learning curve of 53 ELRAs for major postoperative complications. The learning phase showed a significant association with the hemodynamic unstable time (HR −30.29, 95% CI −43.32, −17.25, P < 0.0001), reimplantation time (HR −13.92, 95% CI −23.17, −4.67, P = 0.004), total postoperative stay (HR −6.87, 95% CI −11.33, −2.41, P = 0.0033), and postoperative major morbidity (HR 0.25, 95% CI 0.09, 0.68, p = 0.007) when adjusted for age, disease course, liver function, and remote metastasis.Discussion:Ex vivo liver resection and autotransplantation is feasible and safe with a learning curve of 53 cases for major postoperative complications.
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- 2021
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9. Bicolor angelfish (Centropyge bicolor) provides the first chromosome-level genome of the Pomacanthidae family
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Chunhua Li, Xianwei Yang, Libin Shao, Rui Zhang, Qun Liu, Mengqi Zhang, Shanshan Liu, Shanshan Pan, Weizhen Xue, Congyan Wang, Chunyan Mao, He Zhang, and Guangyi Fan
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Electronic computers. Computer science ,QA75.5-76.95 - Abstract
The Bicolor Angelfish, Centropyge bicolor, is a tropical coral reef fish. It is named for its striking two-color body. However, a lack of high-quality genomic data means little is known about the genome of this species. Here, we present a chromosome-level C. bicolor genome constructed using Hi-C data. The assembled genome is 650 Mbp in size, with a scaffold N50 value of 4.4 Mbp, and a contig N50 value of 114 Kbp. Protein-coding genes numbering 21,774 were annotated. Our analysis will help others to choose the most appropriate de novo genome sequencing strategy based on resources and target applications. To the best of our knowledge, this is the first chromosome-level genome for the Pomacanthidae family, which might contribute to further studies exploring coral reef fish evolution, diversity and conservation.
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- 2021
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10. The Silt-like linear matter occupying the gallbladder
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Zerong Xie, Xianwei Yang, and Menghang Wu
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Gallbladder ,Taenia saginata ,Gallbladder stones ,Traditional Chinese Medicine ,Surgery ,RD1-811 - Published
- 2022
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11. Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil
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Yun-Peng Zhao, Guangyi Fan, Ping-Ping Yin, Shuai Sun, Ning Li, Xiaoning Hong, Gang Hu, He Zhang, Fu-Min Zhang, Jing-Dan Han, Ya-Jun Hao, Qiwu Xu, Xianwei Yang, Wenjie Xia, Wenbin Chen, Han-Yang Lin, Rui Zhang, Jiang Chen, Xiao-Ming Zheng, Simon Ming-Yuen Lee, Joongku Lee, Koichi Uehara, Jian Wang, Huanming Yang, Cheng-Xin Fu, Xin Liu, Xun Xu, and Song Ge
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Science - Abstract
Ginkgo is one of the living fossils from the plant kingdom. Here, authors conduct population genomics analyses to reveal its refugia and demographic history, and provide evidence of multiple anthropogenic introductions of ginkgo from eastern China into different continents.
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- 2019
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12. Impact of surgical resection for gastrointestinal stromal tumor (GIST) patients with initially diagnosed synchronous hepatic metastases on long-term survival outcomes
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Jian Wang, Tao Wang, Xianwei Yang, Yi Yang, Xin He, and Wentao Wang
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Hepatology ,Gastroenterology - Abstract
The effect of surgical resection on the long-term outcome of GIST patients with initially diagnosed synchronous hepatic metastases in the targeted therapy era is still uncertain. The main aims of this study were to investigate the role of surgery in the treatment of these patients and establish clinical predictive models for assessing prognosis.We identified these patients from the Surveillance, Epidemiology and End Results (SEER) database between 2010 and 2018. The selection bias in comparisons was minimized by performing propensity score matching (PSM). The risk factors associated with long-term survival outcomes were identified by a Cox proportional hazards model and thus used to establish the nomograms. Nomograms were validated by concordance indexes (C-indexes), time-dependent receiver operator characteristic (ROC) curves, calibration plots, and decision curve analyses (DCA).Of these 523 eligible patients, there were 187 (35.8%) and 336 (64.2%) patients in the surgical and nonsurgical groups, respectively. Multivariate analysis revealed that surgical resection was an independent prognostic factor for OS (hazard ratio [HR] 0.62; 95% confidence interval [CI] 0.44-0.88, p = 0.0068) and CSS (HR 0.51; 95% CI 0.33 - 0.77, p = 0.0016). After PSM, it was found that surgical resection still showed significantly improved OS (5-year 54.9% vs 38.8%, p = 0.028) and CSS (5-year 65.8% vs 50.3%, p = 0.077). In addition, the C-indexes of the nomograms for OS and CSS prediction were 0.692 and 0.705, respectively, and the nomograms showed good consistency.This study revealed that surgical resection has a favorable impact on the long-term outcome of patients with synchronous GIST liver metastases, and the nomograms showed remarkable prediction performance for OS and CSS.
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- 2023
13. Development and Validation of a Nomogram for Differentiating Combined Hepatocellular Cholangiocarcinoma From Intrahepatic Cholangiocarcinoma
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Tao Wang, Wanxiang Wang, Jinfu Zhang, Xianwei Yang, Shu Shen, and Wentao Wang
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intrahepatic cholangiocarcinoma ,combined hepatocellular cholangiocarcinoma ,differential diagnosis ,least absolute shrinkage and selection operator regression ,nomogram ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
ObjectivesTo establish a nomogram based on preoperative laboratory study variables using least absolute shrinkage and selection operator (LASSO) regression for differentiating combined hepatocellular cholangiocarcinoma (cHCC) from intrahepatic cholangiocarcinoma (iCCA).MethodsWe performed a retrospective analysis of iCCA and cHCC patients who underwent liver resection. Blood signatures were established using LASSO regression, and then, the clinical risk factors based on the multivariate logistic regression and blood signatures were combined to establish a nomogram for a differential preoperative diagnosis between iCCA and cHCC. The differential accuracy ability of the nomogram was determined by Harrell’s index (C-index) and decision curve analysis, and the results were validated using a validation set. Furthermore, patients were categorized into two groups according to the optimal cut-off values of the nomogram-based scores, and their survival differences were assessed using Kaplan-Meier curves.ResultsA total of 587 patients who underwent curative liver resection for iCCA or cHCC between January 2008 and December 2017 at West China Hospital were enrolled in this study. The cHCC score was based on the personalized levels of the seven laboratory study variables. On multivariate logistic analysis, the independent factors for distinguishing cHCC were age, sex, biliary duct stones, and portal hypertension, all of which were incorporated into the nomogram combined with the cHCC-score. The nomogram had a good discriminating capability, with a C-index of 0.796 (95% CI, 0.752–0.840). The calibration plot for distinguishing cHCC from iCCA showed optimal agreement between the nomogram prediction and actual observation in the training and validation sets. The decision curves indicated significant clinical usefulness.ConclusionThe nomogram showed good accuracy for the differential diagnosis between iCCA and cHCC preoperatively, and therapeutic decisions would improve if it was applied in clinical practice.
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- 2020
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14. Emergency laparoscopy-treated spontaneous bleeding and cystobiliary communication of multiple liver cysts
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Xianwei Yang, Tao Wang, and Wentao Wang
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Liver cysts ,Spontaneous bleeding ,Cystobiliary communication ,Laparoscopic ,Emergency ,Surgery ,RD1-811 - Published
- 2020
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15. Another case of hepatic alveolar echinococcosis?
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Tao Wang, Xianwei Yang, and Wentao Wang
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Liver lesion ,Primary cholangiocellular carcinosarcoma ,Hepatic alveolar echinococcosis ,Surgery ,RD1-811 - Published
- 2020
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16. A genomic-clinical nomogram predicting recurrence-free survival for patients diagnosed with hepatocellular carcinoma
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Junjie Kong, Tao Wang, Shu Shen, Zifei Zhang, Xianwei Yang, and Wentao Wang
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Hepatocellular carcinoma ,Recurrence ,Bioinformatics ,Nomogram ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Liver resection surgery is the most commonly used treatment strategy for patients diagnosed with hepatocellular carcinoma (HCC). However, there is still a chance for recurrence in these patients despite the survival benefits of this procedure. This study aimed to explore recurrence-related genes (RRGs) and establish a genomic-clinical nomogram for predicting postoperative recurrence in HCC patients. A total of 123 differently expressed genes and three RRGs (PZP, SPP2, and PRC1) were identified from online databases via Cox regression and LASSO logistic regression analyses and a gene-based risk model containing RRGs was then established. The Harrell’s concordance index (C-index), receiver operating characteristic (ROC) curves and calibration curves showed that the model performed well. Finally, a genomic-clinical nomogram incorporating the gene-based risk model, AJCC staging system, and Eastern Cooperative Oncology Group performance status was constructed to predict the 1-, 2-, and 3-year recurrence-free survival rates (RFS) for HCC patients. The C-index, ROC analysis, and decision curve analysis were good indicators of the nomogram’s performance. In conclusion, we identified three reliable RRGs associated with the recurrence of cancer and constructed a nomogram that performed well in predicting RFS for HCC patients. These findings could enrich our understanding of the mechanisms for HCC recurrence, help surgeons predict patients’ prognosis, and promote HCC treatment.
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- 2019
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17. Development and Evaluation of a Film Forming System Containing Myricetin and Miconazole Nitrate for Preventing Candida albicans Catheter-Related Infection
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Fei Mo, Peipei Zhang, Qingqing Li, Xianwei Yang, Jia Ma, and Jiye Zhang
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Microbiology (medical) ,Pharmacology ,Immunology ,Microbiology - Published
- 2022
18. ImReMuDF: Redundant Mutants Identification Method Based on Definition and Reference of Variables
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Xiaofei Li, Zhenpeng Liu, Yonggang Zhao, Yi Liu, and Xianwei Yang
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Article Subject ,Computer science ,Mutant ,Execution time ,Computer Science Applications ,Reliability engineering ,Identification rate ,QA76.75-76.765 ,Identification (information) ,Software testing ,Mutation testing ,Redundancy (engineering) ,Computer software ,Software ,Data-flow analysis - Abstract
Mutation testing is an effective defect-based software testing method, but a large number of mutants lead to expensive testing costs, which hinders the application of variation testing in industrial engineering. To solve this problem and enable mutation testing to be applied in industrial engineering, this paper improves the method of identifying redundant mutants based on data flow analysis and proposes the inclusion relationship between redundant mutants, so that the redundancy rate of mutants is reduced. In turn, the cost of mutation testing can be reduced. The redundant mutants identification method based on definition and reference of variables (ImReMuDF) was validated and evaluated using 8 C programs. The minimum improvement in redundant mutant identification rate was 34.0%, and the maximum improvement was 71.3% in the 8 C programs tested, and the verification results showed that the method is feasible and effective and has been improved in reducing redundant mutants and effectively reducing the execution time of mutation testing.
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- 2021
19. Pan‑cancer analysis supports MAPK12 as a potential prognostic and immunotherapeutic target in multiple tumor types, including in THCA
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Jinju, Wang, Zhe, Song, Li, Ren, Bowei, Zhang, Yun, Zhang, Xianwei, Yang, Tong, Liu, Yi, Gu, and Chao, Feng
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Cancer Research ,Oncology - Abstract
P38 mitogen-activated protein kinase (MAPK)12 (also known as P38 γ) is critical in the development and progression of various types of tumors. Despite the extensive literature on the subject, further studies are needed to elucidate its role in cancer progression. Here, a comprehensive bioinformatics analysis of a generalized cancer dataset was performed to explore the mechanism of MAPK12 regulation in tumorigenesis. Several tumor datasets and online analytical tools, including HPA, SangerBox, UALCAN, GEPIA2, STRING, ImmuCellAI, and MEXPRESS, were used to analyze the expression information on MAPK12 in several types of cancers. Western blotting and reverse transcription-quantitative PCR were used to verify the protein and mRNA expression levels of MAPK12, respectively, in human normal thyroid cells (HTORI-3) and thyroid carcinoma (THCA) cells. Cytotoxicity and EdU assays were used to verify the promoting effect of MAPK12 on cell proliferation in THCA cells. Analysis of several cancers found that MAPK12 was overexpressed in multiple cancer types. Upregulated MAPK12 mRNA expression levels were correlated with a worse prognosis in patients with several types of cancer. Cytotoxicity and EdU experiments showed that MAPK12 knockdown inhibited THCA cell proliferation. Gene Ontology-Biological Process and Kyoto Encyclopedia of Genes and Genomes analyses showed that the enrichment of MAPK12 genes was related to cell proliferation and the tumor immune microenvironment. These results showed that MAPK12 was closely related to the immune checkpoint, microsatellite instability, and tumor mutational burden and affected the sensitivity of the tumor to immunotherapy. This study showed that MAPK12 may be an immunotherapeutic and promising prognostic biomarker in certain types of tumors.
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- 2022
20. Response to crizotinib in a patient with MET‐ amplified hepatocellular carcinoma
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Wenjing Wang, Xianwei Yang, Chun-Feng Xie, Mian Xu, Qing-Lian Chen, Cheng-Ming Xiong, Haijun Huang, Chong Zhong, Kun-Liang Feng, and Tengjiao Lin
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Oncology ,medicine.medical_specialty ,Hepatology ,Crizotinib ,medicine.diagnostic_test ,business.industry ,medicine.medical_treatment ,Met amplification ,Tissue sample ,Drug resistance ,medicine.disease ,digestive system diseases ,Targeted therapy ,Clinical trial ,03 medical and health sciences ,0302 clinical medicine ,Infectious Diseases ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,Internal medicine ,Biopsy ,medicine ,030211 gastroenterology & hepatology ,business ,medicine.drug - Abstract
Aims Molecular profiling of hepatocellular carcinoma (HCC) has helped identify actionable genomic alterations that could guide therapeutic decision-making and clinical trial enrollment. However, in clinical practice, next-generation sequencing (NGS) is not extensively used in routine clinical care to identify patients with HCC who are likely to benefit from genome-directed targeted therapies. Methods Here, we describe the case of a 66-year-old man with advanced HCC. After rapid progression on transarterial chemoembolization, the tissue sample obtained from biopsy was subjected to NGS to verify whether precision therapy was an option. Results Our analysis revealed high MET amplification. The patient received crizotinib (250 mg, bid) and showed a remarkable response. Conclusions Our case report suggests NGS could help identify patients with high MET amplification in HCC who were likely to benefit from MET inhibitors; moreover, this requires further investigation in clinical trials.
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- 2021
21. Relevance of regional lymph node invasion in radical hepatectomy and lymphadenectomy for alveolar echinococcosis
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Xianwei Yang, Haizhou Qiu, Shu Shen, and Wentao Wang
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medicine.medical_specialty ,RD1-811 ,medicine.medical_treatment ,Alveolar echinococcosis ,Group A ,Group B ,Invasion ,Echinococcosis ,medicine ,Hepatectomy ,Humans ,Lymph node ,Pathological ,Retrospective Studies ,business.industry ,Lymphadenectomy ,medicine.anatomical_structure ,Lymph Node Excision ,Surgery ,Radiology ,Lymph ,Lymph Nodes ,business - Abstract
Summary Aim Regional lymph node enlargement and alveolar echinococcosis (AE) invasion are two different pathological results. The purpose of this study was to distinguish whether regional lymph node invasion and lymphadenectomy were associated with survival benefits. Methods This study enrolled consecutive patients with AE underwent radical hepatectomy with removal and pathological assessment of the regional lymph nodes between January 2009 and April 2019. Based on the pathological examination, patients with inflammatory lymph node enlargement was included in group A, and patients with AE lymph node invasion were included in group B. The clinical characteristics, survival and recurrence rates of the two groups were compared. Results 421 patients underwent radical hepatectomy, of whom 127 (30.16%) underwent lymphadenectomy. 103 patients were enrolled group A, and 24 were enrolled in group B. Preoperative computed tomography showed that the lymph node positivity rate in group B was 70.8% while that in group A was 43.7% (p = 0.017). The lymph node diameter was 1.8 ± 0.9 cm in group A vs 2.5 ± 1.1 cm in group B (p = 0.004), and the lymph node number (p = 0.035) and lymph node location (p = 0.001) were also different between the two groups. 10 patients (7.9%) had recurrent lesions, and 6 patients (4.7%) died (P > 0.05). Conclusions Preoperative computed tomography has a low sensitivity in diagnosing lymph node invasion of AE. Lymph node diameter, number, and distance from the liver were important characteristics for describing lymph node invasion. There was no difference in the long-term efficacy of lymphadenectomy between patients with lymph node enlargement and those with invasion.
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- 2022
22. Associations of genetic polymorphisms in CTLA-4 and IL-18 with chronic liver diseases: Evidence from a meta-analysis
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Xianwei Yang, Shenglong Zhang, and Wentao Wang
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Liver Cirrhosis ,0106 biological sciences ,Population ,Disease ,Cochrane Library ,Biology ,Bioinformatics ,Chronic liver disease ,Polymorphism, Single Nucleotide ,01 natural sciences ,Hepatitis ,03 medical and health sciences ,Genetics ,medicine ,Humans ,CTLA-4 Antigen ,Allele ,education ,030304 developmental biology ,0303 health sciences ,education.field_of_study ,Liver Neoplasms ,Interleukin-18 ,medicine.disease ,CTLA-4 ,Meta-analysis ,Interleukin 18 ,010606 plant biology & botany - Abstract
Background The aim of this meta-analysis was to explore associations between polymorphisms in CTLA-4/IL-18 and chronic liver diseases by combing the results of all relevant studies. Methods Eligible studies were searched from Pubmed, Embase, Web of Science and Cochrane library. We used Review Manager to combine the results of eligible studies. Results Sixty-seven studies were included in this meta-analysis. Combined results revealed that CTLA-4 rs231775 (dominant, recessive and allele comparisons), IL-18 rs1946518 (dominant, recessive and allele comparisons) and IL-18 rs187238 (dominant, over-dominant and allele comparisons) polymorphisms were all significantly associated with chronic liver diseases in the overall population. We also obtained similar positive results for rs231775, rs5742909, rs3087243, rs1946518 and rs187238 polymorphisms in subgroup analyses by ethnicity and type of disease. Conclusions This meta-analysis demonstrated that CTLA-4 rs231775, CTLA-4 rs5742909, CTLA-4 rs3087243, IL-18 rs1946518 and IL-18 rs187238 polymorphisms may confer susceptibility to certain types of chronic liver diseases.
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- 2020
23. Automatic Generation of Test Cases Based on Genetic Algorithm and RBF Neural Network
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Zhenpeng Liu, Xianwei Yang, Shichen Zhang, Yi Liu, Yonggang Zhao, and Weihua Zheng
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Article Subject ,Computer Networks and Communications ,Computer Science Applications - Abstract
Software testing plays an important role in improving the quality of software, but the design of test cases requires a lot of manpower, material resources, and time, and designers tend to be subjective when designing test cases. To solve this problem and make the test cases have objectivity and greater coverage, a branch coverage test case automatic generation method based on genetic algorithm and RBF neural network algorithm (GAR) is proposed. In terms of test case generation, based on the genetic algorithm optimized in this paper, a certain number of test case samples are randomly selected to train the RBF neural network to simulate the fitness function and to calculate the individual fitness value. The experiment uses 7 C language codes to automatically generate test cases and compares the experimental data generated by the branch coverage test case generation method based on adaptive genetic algorithm (PDGA), traditional genetic algorithm (SGA), and random test generation method (random) to evaluate the proposed algorithm. The experimental results show that the method is feasible and effective, the branch coverage is increased in the generation of test cases, and the number of iterations of the population is less.
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- 2022
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24. Five Core Genes Related to the Progression and Prognosis of Hepatocellular Carcinoma Identified by Analysis of a Coexpression Network
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Xianwei Yang, Tao Wang, Shu Shen, Junjie Kong, Wentao Wang, and Zifei Zhang
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0301 basic medicine ,RFC4 ,Carcinoma, Hepatocellular ,Ribonucleoside Diphosphate Reductase ,Human Protein Atlas ,Computational biology ,Biology ,medicine.disease_cause ,Histones ,03 medical and health sciences ,0302 clinical medicine ,Interaction network ,Proliferating Cell Nuclear Antigen ,Biomarkers, Tumor ,Genetics ,medicine ,Humans ,Gene Regulatory Networks ,Protein Interaction Maps ,Replication Protein C ,Molecular Biology ,Gene ,Gene Expression Profiling ,Tumor Suppressor Proteins ,Liver Neoplasms ,Computational Biology ,Cancer ,Cell Biology ,General Medicine ,Prognosis ,medicine.disease ,digestive system diseases ,Gene Expression Regulation, Neoplastic ,Securin ,030104 developmental biology ,ROC Curve ,Case-Control Studies ,030220 oncology & carcinogenesis ,Hepatocellular carcinoma ,Disease Progression ,Transcriptome ,Carcinogenesis ,H2AFZ - Abstract
The molecular mechanism of tumorigenesis of the prevalent cancer hepatocellular carcinoma (HCC) is unclear. In this study, through weighted gene coexpression network analysis, a coexpression network was constructed by selecting the top 25% most variant genes in the dataset GSE62232. The average linkage hierarchical clustering identified 24 modules, and among them, the pink module associated with prognosis of HCC was screened. Five gene candidates (PCNA, RFC4, PTTG1, H2AFZ, and RRM1) with a common network in the module were screened after the protein-protein interaction network complex was combined with the coexpression network. After progression and survival analysis, all candidates were identified as real core genes. According to the Human Protein Atlas and the Oncomine database, these genes were dysregulated in HCC samples. The receiver operating characteristic curve proved that the expression levels of the core genes had high diagnostic efficacy. The results of gene set enrichment analysis and functional enrichment analysis demonstrated the importance of the cell cycle-related pathways in HCC progression and prognosis. In conclusion, the five real core genes and cell cycle-related pathways identified in this study could greatly improve the knowledge about HCC progression and contribute to HCC treatment.
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- 2019
25. Learning Curve of Ex Vivo Liver Resection and Autotransplantation in Treating End-Stage Hepatic Alveolar Echinococcosis: A RA-CUSUM Analysis
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Bin Huang, Tao Wang, Shu Shen, Yiwen Qiu, Wentao Wang, Xianwei Yang, and Yi Yang
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medicine.medical_specialty ,autotransplantation ,RD1-811 ,liver transplantation ,business.industry ,Incidence (epidemiology) ,medicine.medical_treatment ,living donor ,Hemodynamics ,Retrospective cohort study ,Liver transplantation ,Autotransplantation ,Surgery ,risk-adjusted cumulative sum analysis ,ex vivo resection ,alveolar echinococcosis ,Clinical endpoint ,Medicine ,Liver function ,Stage (cooking) ,business ,Original Research - Abstract
Background: This retrospective study aimed to evaluate the safety and learning curve of ex vivo liver resection and autotransplantation (ELRA).Methods: A total of 102 consecutive end-stage HAE patients who underwent ELRA between 2014 and 2020 in West China Hospital were enrolled. The primary endpoint was major postoperative complications (comprehensive complication index, CCI > 26). The ELRA learning curve was evaluated using risk-adjusted cumulative sum (RA-CUSUM) methods. The learning phases were determined based on RA-CUSUM analysis and tested for their association with intra- and post-operative endpoints.Results: The median surgery time was 738 (659–818) min, with a median blood loss of 2,250 (1,600–3,000) ml. The overall incidence of major morbidity was 38.24% (39/102). Risk-adjusted cumulative sum analysis demonstrated a learning curve of 53 ELRAs for major postoperative complications. The learning phase showed a significant association with the hemodynamic unstable time (HR −30.29, 95% CI −43.32, −17.25, P < 0.0001), reimplantation time (HR −13.92, 95% CI −23.17, −4.67, P = 0.004), total postoperative stay (HR −6.87, 95% CI −11.33, −2.41, P = 0.0033), and postoperative major morbidity (HR 0.25, 95% CI 0.09, 0.68, p = 0.007) when adjusted for age, disease course, liver function, and remote metastasis.Discussion:Ex vivo liver resection and autotransplantation is feasible and safe with a learning curve of 53 cases for major postoperative complications.
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- 2021
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26. The Silt-like linear matter occupying the gallbladder
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Zerong Xie, Xianwei Yang, and Menghang Wu
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Gallbladder stones ,RD1-811 ,Abdomen ,Traditional Chinese Medicine ,Gallbladder ,Humans ,Taenia saginata ,Surgery - Published
- 2021
27. Evaluating the Benefits and Risks of Ex Vivo Liver Resection and Autotransplantation in Treating Hepatic End-stage Alveolar Echinococcosis
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Yiwen Qiu, Bin Huang, Xianwei Yang, Tao Wang, Shu Shen, Yi Yang, and Wentao Wang
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Microbiology (medical) ,Echinococcosis, Hepatic ,Infectious Diseases ,Echinococcosis ,Humans ,Risk Assessment ,Transplantation, Autologous ,Liver Transplantation ,Retrospective Studies - Abstract
Background Ex vivo liver resection and autotransplantation (ELRA) has shown promising outcomes in treating end-stage hepatic alveolar echinococcosis (AE). However, the actual benefits and risks remain unclear. This study aims to analyze the benefits and risks of ELRA. Methods This retrospective cohort analysis included 228 patients with end-stage hepatic AE who underwent ELRA or nonsurgical treatment between 2014 and 2020. Propensity score matching was used. Long-term survival was compared in the matched cohorts using Kaplan-Meier curves generated with the log-rank test. Short-term mortality in entire cohort was predicted based on the nonsurgical group, and the interaction between the predicted mortality risk and observed mortality was tested. Risk factors for postoperative major morbidity in the ELRA group were evaluated using logistic regression analyses. Results The long-term overall survival of the ELRA group was superior to that of the nonsurgical group (82.1% vs 19.1%, 5-year survival). Regarding short-term outcomes, the basic risk of 12-month mortality exerted a significant effect on the benefit of ELRA in entire cohort (per 1%, odds ratio, 1.043; 95% confidence interval [CI]: 1.007–1.082; P = .021). Patients with a predicted 12-month mortality risk >75% would significantly benefit from ELRA. Combined resection (hazard ratio [HR], 3.32; 95% CI: 1.01–10.99; P = .049) and overall surgery time (per hour, HR, 1.41; 95% CI: 1.09–1.82; P = .009) were identified as independent risk factors for postoperative major morbidity. Conclusions ELRA was significantly beneficial in selected patients with end-stage AE compared with nonsurgical treatment. The timing of conducting ELRA remarkably affected the short-term risk of mortality and should be carefully determined.
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- 2021
28. Development and Validation of Artificial Neural Networks for Survival Prediction Model for Patients with Spontaneous Hepatocellular Carcinoma Rupture After Transcatheter Arterial Embolization
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Xianwei Yang, Yiwen Qiu, Wentao Wang, Yi Yang, Tao Wang, and Shu Shen
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Oncology ,medicine.medical_specialty ,HCC spontaneous rupture bleeding ,LASSO regression ,survival ,Lasso (statistics) ,Internal medicine ,Medicine ,Original Research ,Artificial neural network ,Receiver operating characteristic ,hepatocellular carcinoma spontaneous rupture bleeding ,business.industry ,Proportional hazards model ,Arterial Embolization ,least absolute shrinkage and selection operator regression ,ANNs ,medicine.disease ,Cancer Management and Research ,Hepatocellular carcinoma ,Extrahepatic metastasis ,prognosis ,Complication ,business ,artificial neural networks - Abstract
Yiwen Qiu, Tao Wang, Xianwei Yang, Shu Shen, Yi Yang, Wentao Wang Department of Liver Surgery and Liver Transplantation Center, West China Hospital of Sichuan University, Chengdu, 610041, Peopleâs Republic of ChinaCorrespondence: Wentao WangDepartment of Liver Surgery and Liver Transplantation Center, West China Hospital of Sichuan University, 37 Guoxue Road, Chengdu, 610041, Peopleâs Republic of ChinaTel +86 18980601895Fax +86 28-85422871Email wwtdoctor02@163.comBackground: Spontaneous rupture bleeding is a fatal hepatocellular carcinoma (HCC) complication and a significant determinant of survival outcomes. This study aimed to develop and validate a novel artificial neural network (ANN)-based survival prediction model for patients with spontaneous HCC rupture after transcatheter arterial embolization (TAE).Methods: Patients with spontaneous HCC rupture bleeding who underwent TAE at our hospital between January 2010 and December 2018 were included in our study. The least absolute shrinkage and selection operator (LASSO) Cox regression model was used to screen clinical variables related to prognosis. We incorporated the above clinical variables identified by LASSO Cox regression into the ANNs model. Multilayer perceptron ANNs were used to develop the 1-year overall survival (OS) prediction model for patients with spontaneous HCC ruptured bleeding in the training set. The area under the receiver operating characteristic curve and decision curve analysis were used to compare the predictive capability of the ANNs model with that of existing conventional prediction models.Results: The median survival time for the whole set was 11.8 months, and the 1-year OS rate was 47.5%. LASSO Cox regression revealed that sex, extrahepatic metastasis, macroscopic vascular invasion, tumor number, hepatitis B surface antigen, hepatitis B e antigen, tumor size, alpha-fetoprotein, fibrinogen, direct bilirubin, red blood cell, and γ-glutamyltransferase were risk factors for OS. An ANNs model with 12 input nodes, seven hidden nodes, and two corresponding prognostic outcomes was constructed. In the training set and the validation set, AUCs for the ability of the ANNs model to predict the 1-year OS of patients with spontaneous HCC rupture bleeding were 0.923 (95% CI, 0.890â 0.956) and 0.930 (95% CI, 0.875â 0.985), respectively, which were higher than that of the existing conventional models (all P < 0.0001).Conclusion: The ANNs model that we established has better survival prediction performance.Keywords: hepatocellular carcinoma spontaneous rupture bleeding, HCC spontaneous rupture bleeding, least absolute shrinkage and selection operator regression, LASSO regression, artificial neural networks, ANNs, survival, prognosis
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- 2021
29. A Sarcopenia-Based Prediction Model for Postoperative Complications of ex vivo Liver Resection and Autotransplantation to Treat End-Stage Hepatic Alveolar Echinococcosis
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Yiwen Qiu, Tao Wang, Shu Shen, Wentao Wang, Xianwei Yang, Yi Yang, Ting Sun, and Bin Huang
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Pharmacology ,medicine.medical_specialty ,Receiver operating characteristic ,liver transplantation ,business.industry ,medicine.medical_treatment ,Retrospective cohort study ,Perioperative ,Nomogram ,Liver transplantation ,hepatic alveolar echinococcosis ,medicine.disease ,Autotransplantation ,Surgery ,sarcopenia ,Infectious Diseases ,hepatectomy ,Infection and Drug Resistance ,Sarcopenia ,medicine ,postoperative complications ,Pharmacology (medical) ,Hepatectomy ,business ,Original Research - Abstract
Ting Sun,1 Tao Wang,1 Yiwen Qiu,1 Shu Shen,1 Xianwei Yang,1 Yi Yang,1 Bin Huang,2 Wentao Wang1 1Department of Liver Surgery & Liver Transplantation Center, West China Hospital of Sichuan University, Chengdu, Peopleâs Republic of China; 2Department of Vascular Surgery, West China Hospital of Sichuan University, Chengdu, Peopleâs Republic of ChinaCorrespondence: Wentao Wang Email wwtdoctor02@163.comBackground: Sarcopenia and visceral adiposity have been shown to be associated with postoperative complications in numerous diseases. However, their effects on the postoperative complications of end-stage hepatic alveolar echinococcosis (HAE) patients undergoing ex vivo liver resection and autotransplantation (ELRA) remain unclear.Methods: This retrospective study included 101 end-stage HAE patients who underwent ELRA from January 2014 to August 2020. We measured the skeletal muscle and adipose tissue of all patients at the level of the third lumbar vertebra on plain abdominal computed tomography (CT) images and subsequently derived an equation via least absolute shrinkage and selection operator (LASSO) regression analysis to calculate the sarcopenia score. Univariate and multivariate regression were performed to reveal the relationship between major postoperative complications and perioperative clinical data, and the obtained nomogram was validated with the bootstrapping method.Results: The sarcopenia score was constructed as a personalized indicator to evaluate sarcopenia and visceral adiposity in each patient. Logistic regression analysis finally selected duration from primary diagnosis to obvious symptoms (OR=1.024, 95% CI, 1.007â 1.042), surgical time (OR=1.003, 95% CI, 0.999â 1.007) and sarcopenia score (OR=4.283, 95% CI, 1.739â 10.551) as independent risk factors for predicting major postoperative complications following ELRA for end-stage HAE patients. The area under the receiver operating characteristic curve (AUROC) of 0.807 (95% CI, 0.720â 0.895) and the calibration curve for this prediction model were satisfactory.Conclusion: The sarcopenia score, which systematically evaluates the skeletal muscle and adipose tissue of end-stage HAE patients, was a significant predictive factor for major postoperative complications of ELRA. Relevant interventions should be conducted for those who have a high risk of postoperative complications according to the nomogram.Keywords: hepatic alveolar echinococcosis, liver transplantation, hepatectomy, sarcopenia, postoperative complications
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- 2021
30. Comparative genomic analysis of 45 type strains of the genus Bifidobacterium: a snapshot of its genetic diversity and evolution.
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Zhihong Sun, Wenyi Zhang, Chenyi Guo, Xianwei Yang, Wenjun Liu, Yarong Wu, Yuqin Song, Lai Yu Kwok, Yujun Cui, Bilige Menghe, Ruifu Yang, Liangping Hu, and Heping Zhang
- Subjects
Medicine ,Science - Abstract
Bifidobacteria are well known for their human health-promoting effects and are therefore widely applied in the food industry. Members of the Bifidobacterium genus were first identified from the human gastrointestinal tract and were then found to be widely distributed across various ecological niches. Although the genetic diversity of Bifidobacterium has been determined based on several marker genes or a few genomes, the global diversity and evolution scenario for the entire genus remain unresolved. The present study comparatively analyzed the genomes of 45 type strains. We built a robust genealogy for Bifidobacterium based on 402 core genes and defined its root according to the phylogeny of the tree of bacteria. Our results support that all human isolates are of younger lineages, and although species isolated from bees dominate the more ancient lineages, the bee was not necessarily the original host for bifidobacteria. Moreover, the species isolated from different hosts are enriched with specific gene sets, suggesting host-specific adaptation. Notably, bee-specific genes are strongly associated with respiratory metabolism and are potential in helping those bacteria adapt to the oxygen-rich gut environment in bees. This study provides a snapshot of the genetic diversity and evolution of Bifidobacterium, paving the way for future studies on the taxonomy and functional genomics of the genus.
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- 2015
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31. Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil
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Guangyi Fan, Ning Li, Ya-Jun Hao, Wenbin Chen, Huanming Yang, Cheng-Xin Fu, Xun Xu, Shuai Sun, Song Ge, Xiaoming Zheng, Fu-Min Zhang, Wenjie Xia, Jiang Chen, Yunpeng Zhao, Rui Zhang, He Zhang, Xianwei Yang, Xiaoning Hong, Han-Yang Lin, Simon Ming-Yuen Lee, Gang Hu, Ping-Ping Yin, Jian Wang, Qiwu Xu, Koichi Uehara, Jing-Dan Han, Xin Liu, and Joongku Lee
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0106 biological sciences ,0301 basic medicine ,China ,Science ,Population ,General Physics and Astronomy ,010603 evolutionary biology ,01 natural sciences ,Article ,Evolutionary genetics ,General Biochemistry, Genetics and Molecular Biology ,Plant evolution ,03 medical and health sciences ,Phylogenetics ,Genetic variation ,Selection, Genetic ,education ,lcsh:Science ,Phylogeny ,education.field_of_study ,Multidisciplinary ,Natural selection ,Extinction ,biology ,Fossils ,Ecology ,Ginkgo biloba ,Ginkgo ,Genomics ,General Chemistry ,biology.organism_classification ,Adaptation, Physiological ,Biological Evolution ,Genome evolution ,030104 developmental biology ,Geography ,Seeds ,lcsh:Q ,Adaptation ,Living fossil ,Genome, Plant - Abstract
As Charles Darwin anticipated, living fossils provide excellent opportunities to study evolutionary questions related to extinction, competition, and adaptation. Ginkgo (Ginkgo biloba L.) is one of the oldest living plants and a fascinating example of how people have saved a species from extinction and assisted its resurgence. By resequencing 545 genomes of ginkgo trees sampled from 51 populations across the world, we identify three refugia in China and detect multiple cycles of population expansion and reduction along with glacial admixture between relict populations in the southwestern and southern refugia. We demonstrate multiple anthropogenic introductions of ginkgo from eastern China into different continents. Further analyses reveal bioclimatic variables that have affected the geographic distribution of ginkgo and the role of natural selection in ginkgo’s adaptation and resilience. These investigations provide insights into the evolutionary history of ginkgo trees and valuable genomic resources for further addressing various questions involving living fossil species., Ginkgo is one of the living fossils from the plant kingdom. Here, authors conduct population genomics analyses to reveal its refugia and demographic history, and provide evidence of multiple anthropogenic introductions of ginkgo from eastern China into different continents.
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- 2019
32. L-Se-methylselenocysteine loaded mucoadhesive thermogel for effective treatment of Vulvar candidiasis
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Xianwei, Yang, Menghan, Wang, Ximeng, Kang, Fei, Mo, Peiru, Si, Jia, Ma, Peipei, Zhang, Shaohua, Zheng, Jiyu, Li, Yang, Wang, Qingqing, Li, and Jiye, Zhang
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Antifungal Agents ,Candida albicans ,Animals ,Humans ,Pharmaceutical Science ,Female ,Candidiasis, Vulvovaginal ,Candida ,Rats ,Selenocysteine - Abstract
Vulvar candidiasis (VVC) is a vaginitis caused by vaginal mucosa infection of Candida, which greatly impairs women's health. Although there are more and more thiazoles on the market, new classes of antifungal drugs are still missing, it is still challenging to treat azole-resistant candidal vaginitis. We found that L-Se-methylselenocysteine (L-SeMC) could effectively inhibit the growth of Candida albicans, reduce the density and length of the mycelia. To extend the retention time of L-SeMC in the vaginal tract and enhance its therapeutic effect for VVC, a mucoadhesive thermogel (NAC-HA thermogel) was successfully synthesized and prepared. The gelation window was around 29-56 °C for L-SeMC loaded mucoadhesive thermogel (L-SeMC@NAC-HA thermogel), which exhibited a sustained release profile in the in vitro release study and an extended retention time in the vaginal tract. Besides, L-SeMC@NAC-HA thermogel exhibited a good safety profile in the in vivo safety study. The in vivo anti-VVC effect was examined in a rat VVC model and L-SeMC@NAC-HA thermogel significantly reduced the number of Candida albicans in the vaginal secreta, mitigated the vaginal damage and reduced the secretion of proinflammatory factors (TNF-α, IL-1α and IL-β). Therefore, it is a promising therapy for the clinical treatment of VVC in the near future.
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- 2022
33. Two-step source tracing strategy of Yersinia pestis and its historical epidemiology in a specific region.
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Yanfeng Yan, Hu Wang, Dongfang Li, Xianwei Yang, Zuyun Wang, Zhizhen Qi, Qingwen Zhang, Baizhong Cui, Zhaobiao Guo, Chang Yu, Jun Wang, Jian Wang, Guangming Liu, Yajun Song, Yingrui Li, Yujun Cui, and Ruifu Yang
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Medicine ,Science - Abstract
Source tracing of pathogens is critical for the control and prevention of infectious diseases. Genome sequencing by high throughput technologies is currently feasible and popular, leading to the burst of deciphered bacterial genome sequences. Utilizing the flooding genomic data for source tracing of pathogens in outbreaks is promising, and challenging as well. Here, we employed Yersinia pestis genomes from a plague outbreak at Xinghai county of China in 2009 as an example, to develop a simple two-step strategy for rapid source tracing of the outbreak. The first step was to define the phylogenetic position of the outbreak strains in a whole species tree, and the next step was to provide a detailed relationship across the outbreak strains and their suspected relatives. Through this strategy, we observed that the Xinghai plague outbreak was caused by Y. pestis that circulated in the local plague focus, where the majority of historical plague epidemics in the Qinghai-Tibet Plateau may originate from. The analytical strategy developed here will be of great help in fighting against the outbreaks of emerging infectious diseases, by pinpointing the source of pathogens rapidly with genomic epidemiological data and microbial forensics information.
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- 2014
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34. High Resolution Imaging Camera (HiRIC) on China’s First Mars Exploration Tianwen-1 Mission
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Fan Zhang, Haibo Zhao, Wei Yan, Qingyu Meng, Fanlu Wu, Yun-Hui Li, Dejie Yan, Qi Ji, Lin Lu, He Yunfeng, Zheng Wang, Hao Xianpeng, Xiaobo Li, Bowei Zhang, Dong Jihong, Dong Wang, Wen-Guang Liu, Ke-jun Wang, Wei Li, Tianyu Sun, Zhirui Cao, Zhou Pengji, Yang Li, Huang Jingtao, Hainan Guan, Zhou Dali, Weiguo Zhao, Xianwei Yang, Yan Wang, Xiao-Dong Wang, and Shiyu Zhu
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Time delay and integration ,010504 meteorology & atmospheric sciences ,Computer science ,Payload ,business.industry ,Astronomy and Astrophysics ,Field of view ,Exploration of Mars ,01 natural sciences ,Optics ,Space and Planetary Science ,Optical transfer function ,Martian surface ,0103 physical sciences ,Focal length ,Nyquist frequency ,business ,010303 astronomy & astrophysics ,0105 earth and related environmental sciences - Abstract
The High-Resolution Imaging Camera (HiRIC) is one major payload of China’s first Mars exploration mission, and its main objective is to obtain the detailed observation images of the key areas on the Martian surface. In this paper, the leading group of HiRIC shows a full blueprint of the HiRIC. The HiRIC can achieve a high resolution (0.5 m at an altitude of 265 km) with a wide swath width of 9 km. The HiRIC adopts an Off-Axis Three-Mirror Astigmatic (TMA) optical system with a focal length of 4640 mm, an F-number of 12 and a Field of View (FOV) of 2° × 0.693°. In order to reduce the instrument weight, carbon-based material is widely used in the opto-mechanical structure which is in ultra-lightweight design, thus, a light-weight camera with a total mass of 42 kg is obtained. The Time Delay and Integration (TDI) Charge Coupled Devices (CCDs) and Complementary Metal-Oxide-Semiconductor Transistor (CMOS) detectors are all set on the imaging plane to achieve the push-broom imaging and frame imaging, respectively. And the high Signal-to-Noise Ratio (SNR) >100:1 can achieve in multi observation types for various scientific imaging tasks. After 4-year design and fabricate, the HiRIC has been assembly. The testing results show that the instrument is in good condition, and the Modulation Transfer Function (MTF) can achieve 0.18 at Nyquist frequency. The HiRIC can achieve a well image on China first Mars exploration mission.
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- 2021
35. Comprehensive Molecular Analyses of a Macrophages-Related Gene Signature With Regard to Prognosis, Immune Features, and Biomarkers for Immunotherapy in Hepatocellular Carcinoma Based on WGCNA and LASSO Algorithm
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Tao Wang, Shu Shen, Yi Yang, Ming Yang, Xianwei Yang, Yiwen Qiu, and Wentao Wang
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History ,Polymers and Plastics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2021
36. Features of Variable Number of Tandem Repeats in Yersinia pestis and the Development of a Hierarchical Genotyping Scheme.
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Yanjun Li, Yujun Cui, Baizhong Cui, Yanfeng Yan, Xianwei Yang, Haidong Wang, Zhizhen Qi, Qingwen Zhang, Xiao Xiao, Zhaobiao Guo, Cong Ma, Jing Wang, Yajun Song, and Ruifu Yang
- Subjects
Medicine ,Science - Abstract
Variable number of tandem repeats (VNTRs) that are widely distributed in the genome of Yersinia pestis proved to be useful markers for the genotyping and source-tracing of this notorious pathogen. In this study, we probed into the features of VNTRs in the Y. pestis genome and developed a simple hierarchical genotyping system based on optimized VNTR loci.Capillary electrophoresis was used in this study for multi-locus VNTR analysis (MLVA) in 956 Y. pestis strains. The general features and genetic diversities of 88 VNTR loci in Y. pestis were analyzed with BioNumerics, and a "14+12" loci-based hierarchical genotyping system, which is compatible with single nucleotide polymorphism-based phylogenic analysis, was established.Appropriate selection of target loci reduces the impact of homoplasies caused by the rapid mutation rates of VNTR loci. The optimized "14+12" loci are highly discriminative in genotyping and source-tracing Y. pestis for molecular epidemiological or microbial forensic investigations with less time and lower cost. An MLVA genotyping datasets of representative strains will improve future research on the source-tracing and microevolution of Y. pestis.
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- 2013
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37. stLFR library construction v1
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Chunhua Li, Xianwei Yang, Libin Shao, Rui Zhang, QunLiu not provided, Mengqi Zhang, Shanshan Liu, Shanshan Pan, Weizhen Xue, Congyan Wang, Chunyan Mao, He Zhang, and Guangyi Fan
- Abstract
This protocol is used to clarity the process of stLFR library preparation for Bicolor Angelfish (Centropyge bicolor) genome.
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- 2020
38. Emergency laparoscopic treated the spontaneous bleeding and cystobiliary communication of multiple liver cysts
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Xianwei Yang, Wentao Wang, and Tao Wang
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medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,lcsh:Surgery ,lcsh:RD1-811 ,Letter to Editor ,Surgery ,Liver cysts ,Laparoscopic ,Emergency ,medicine ,Cystobiliary communication ,Laparoscopy ,business ,Spontaneous bleeding - Published
- 2020
39. Relevance of Regional Lymph Node Invasion in Radical Hepatectomy and Lymphadenectomy for Alveolar Echinococcosis: A Retrospective Cohort Study
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Tao Wang, Shu Shen, Xianwei Yang, and Wentao Wang
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medicine.medical_specialty ,medicine.anatomical_structure ,business.industry ,medicine.medical_treatment ,medicine ,Retrospective cohort study ,Lymphadenectomy ,Alveolar echinococcosis ,Radiology ,Hepatectomy ,business ,Lymph node - Abstract
Background Hepatic Alveolar echinococcosis (AE) is also known as worm cancer, parasitic cancer, and it often invades the regional lymph nodes of the liver. The present study was to investigate the clinical value of radical hepatectomy and lymphadenectomy in AE patients. Methods Our study enrolled consecutive AE patients who underwent radical hepatectomy with removal the regional lymph nodes between January 2009 and April 2019. Patients with inflammatory lymph node enlargement was included in group A, and patients with AE lymph node invasion were included in group B. The clinical characteristics, survival and recurrence rates were compared.Results A total of 103 patients were enrolled group A, and 24 in group B. Preoperative computed tomography showed that the lymph node positivity rate in group B was 70.8% while that in group A was 43.7% (p=0.017). The lymph node diameter was 1.8±0.9 cm in group A vs 2.5±1.1 cm in group B (p=0.004), and the lymph node number (p=0.035) and lymph node location (p=0.001). A total of 10 patients (7.9%) had recurrent lesions, and 6 patients (4.7%) died (P>0.05). Conclusions lymph node diameter, number, and distance from the liver were important characteristics for describing lymph node invasion. There was no difference in the long-term efficacy of lymphadenectomy between patients with lymph node enlargement and those with invasion.
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- 2020
40. Development and Validation of a Nomogram for Differentiating Combined Hepatocellular Cholangiocarcinoma From Intrahepatic Cholangiocarcinoma
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Jinfu Zhang, Wentao Wang, Xianwei Yang, Tao Wang, Shu Shen, and Wanxiang Wang
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medicine.medical_specialty ,Multivariate statistics ,Cancer Research ,Logistic regression ,lcsh:RC254-282 ,nomogram ,03 medical and health sciences ,0302 clinical medicine ,intrahepatic cholangiocarcinoma ,differential diagnosis ,medicine ,Intrahepatic Cholangiocarcinoma ,Original Research ,combined hepatocellular cholangiocarcinoma ,business.industry ,Nomogram ,least absolute shrinkage and selection operator regression ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Regression ,Oncology ,030220 oncology & carcinogenesis ,Portal hypertension ,030211 gastroenterology & hepatology ,Radiology ,Differential diagnosis ,business ,Clinical risk factor - Abstract
ObjectivesTo establish a nomogram based on preoperative laboratory study variables using least absolute shrinkage and selection operator (LASSO) regression for differentiating combined hepatocellular cholangiocarcinoma (cHCC) from intrahepatic cholangiocarcinoma (iCCA).MethodsWe performed a retrospective analysis of iCCA and cHCC patients who underwent liver resection. Blood signatures were established using LASSO regression, and then, the clinical risk factors based on the multivariate logistic regression and blood signatures were combined to establish a nomogram for a differential preoperative diagnosis between iCCA and cHCC. The differential accuracy ability of the nomogram was determined by Harrell’s index (C-index) and decision curve analysis, and the results were validated using a validation set. Furthermore, patients were categorized into two groups according to the optimal cut-off values of the nomogram-based scores, and their survival differences were assessed using Kaplan-Meier curves.ResultsA total of 587 patients who underwent curative liver resection for iCCA or cHCC between January 2008 and December 2017 at West China Hospital were enrolled in this study. The cHCC score was based on the personalized levels of the seven laboratory study variables. On multivariate logistic analysis, the independent factors for distinguishing cHCC were age, sex, biliary duct stones, and portal hypertension, all of which were incorporated into the nomogram combined with the cHCC-score. The nomogram had a good discriminating capability, with a C-index of 0.796 (95% CI, 0.752–0.840). The calibration plot for distinguishing cHCC from iCCA showed optimal agreement between the nomogram prediction and actual observation in the training and validation sets. The decision curves indicated significant clinical usefulness.ConclusionThe nomogram showed good accuracy for the differential diagnosis between iCCA and cHCC preoperatively, and therapeutic decisions would improve if it was applied in clinical practice.
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- 2020
41. Development and Validation of Nomograms for Predicting Cancer-Specific Survival in Elderly Patients with Intrahepatic Cholangiocarcinoma After Liver Resection: A Competing Risk Analysis
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Junjie Kong, Xianwei Yang, Jinfu Zhang, Tao Wang, Shu Shen, Wentao Wang, and Wanxiang Wang
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0301 basic medicine ,Oncology ,medicine.medical_specialty ,Multivariate statistics ,Multivariate analysis ,Competing risks ,elderly patients ,Cancer specific survival ,Resection ,nomogram ,03 medical and health sciences ,0302 clinical medicine ,intrahepatic cholangiocarcinoma ,Internal medicine ,medicine ,Intrahepatic Cholangiocarcinoma ,Original Research ,iCCA ,business.industry ,competing risk analysis ,Specific mortality ,Nomogram ,030104 developmental biology ,Cancer Management and Research ,030220 oncology & carcinogenesis ,liver resection ,business - Abstract
Tao Wang,1,* Jinfu Zhang,1,* Wanxiang Wang,2 Xianwei Yang,1 Junjie Kong,3 Shu Shen,1 Wentao Wang1 1Department of Liver Surgery and Liver Transplantation Center, West China Hospital of Sichuan University, Chengdu, People’s Republic of China; 2Department of Hepatobiliary, Pancreatic, and Splenic Surgery, The Affiliated Hospital of Inner Mongolia Medical University, Hohhot, People’s Republic of China; 3Department of Liver Transplantation and Hepatobiliary Surgery, Shandong Provincial Hospital, Cheeloo College of Medicine, Shandong University, Jinan, Shandong Province, People’s Republic of China*These authors contributed equally to this workCorrespondence: Wentao WangDepartment of Liver Surgery and Liver Transplantation Center, West China Hospital of Sichuan University, Chengdu, People’s Republic of ChinaTel +86 18980601895Fax +86-28-85422871Email wwtdoctor02@163.comBackground: There are few studies on the prognosis of elderly intrahepatic cholangiocarcinoma (iCCA) patients after liver resection. The aims of this study were to assess the cumulative incidences of cancer-specific mortality in elderly iCCA patients and to construct a corresponding competing risk nomogram for elderly iCCA patients.Methods: We performed a retrospective analysis of elderly patients with iCCA who underwent liver resection between January 2006 and December 2019. Eligible elderly iCCA patients were randomly divided into training and validation sets at a ratio of 7:3. Based on the results of multivariate analysis using the Fine-Gray competing risk model, we developed a competing risk nomogram using data from the training set to predict the cumulative probabilities of iCCA-specific mortality. The performance of the nomogram was measured by the concordance index (C-index) and calibration curves. To evaluate the clinical usefulness of the nomogram, the clinical benefit was measured by using decision curve analysis (DCA). Furthermore, the patients were categorized into two groups according to the dichotomy values of the nomogram-based scores, and their survival differences were assessed using Kaplan–Meier and cumulative incidence function (CIF) curves.Results: The 1-year, 3-year and 5-year cumulative iCCA-specific mortalities were 19.7%, 48.3% and 56.1%, respectively, for elderly iCCA patients. The multivariate Fine-Gray analysis indicated that microvascular invasion, macroscopic vascular invasion and lymph node metastasis were related to a significantly higher likelihood of iCCA specific mortality. The established nomogram was well calibrated and had a good discriminative ability, with a concordance index (C-index) of 0.742 (95% CI, 0.708– 0.748). Furthermore, the DCA indicated that the nomogram had positive net benefits compared with the conventional staging systems. In the training set and validation sets, the high-risk group had the higher probabilities of iCCA cancer-specific mortality than the low-risk group; meanwhile, the patients in the high-risk the group had significantly poorer overall survival (OS) than those in the low-risk group.Conclusion: Elderly iCCA patients had comparable long-term outcomes with non-elderly iCCA patients. In addition, we constructed a prognostic nomogram for predicting survival in elderly iCCA patients based on the competing risk analysis. The competing risk nomogram displayed excellent discrimination and calibration.Keywords: intrahepatic cholangiocarcinoma, iCCA, liver resection, elderly patients, competing risk analysis, nomogram
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- 2020
42. Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)
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He Zhang, Xianwei Yang, Suyu Zhang, Huanming Yang, Rod A. Wing, Kun Wang, Yue Song, Yue Chang, Nansheng Chen, Yongxin Li, Jing Wang, Xin Liu, Shunping He, Thomas J. Near, Chenguang Feng, Jeffery Chu, Xiaoyun Huang, Mengqi Zhang, Lili Yu, Xun Xu, Wen Wang, Shanshan Liu, Inge Seim, Guangyi Fan, and Liandong Yang
- Subjects
AcademicSubjects/SCI02254 ,Health Informatics ,Genomics ,Data Note ,Genome ,03 medical and health sciences ,0302 clinical medicine ,Procurement ,biology.animal ,evolution ,stLFR ,Animals ,Humans ,Fish10K ,Human society ,Ecosystem ,030304 developmental biology ,fish ,0303 health sciences ,biology ,Fishes ,Vertebrate ,Computer Science Applications ,genome sequencing ,phylogenetics ,Workflow ,Evolutionary biology ,Vertebrates ,AcademicSubjects/SCI00960 ,%22">Fish ,Data release ,030217 neurology & neurosurgery - Abstract
Background With more than 30,000 species, fish—including bony, jawless, and cartilaginous fish—are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. Results Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. Conclusions To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development.
- Published
- 2020
43. Application of target tracking and abnormal target detection algorithm in power network security
- Author
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Weifeng Wang and Xianwei Yang
- Subjects
Record locking ,Computer science ,Frame (networking) ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Process (computing) ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,Laser ,Tracking (particle physics) ,law.invention ,Position (vector) ,law ,Point (geometry) ,Power network ,Algorithm - Abstract
Targets such as plastic bags can absorb a lot of high-energy lasers which fired from the laser in a long distance. By aligning the laser center with the optical center of the high definition camera, we can determine that the laser emission point is located at the center of video. We can adjust the angle and position of the camera to make the video center coincide with the target, and finally accurately clean up the target from a long distance. In the process of video, this paper uses the target tracking algorithm based on template and the abnormal target detection method based on inter-frame difference. After we lock the target to be cleaned in a frame, the system can automatically calculate the angle and distance if the target swings in the wind, and send the corresponding motion command to the rotating device which can drive the camera to move, finally realize the target tracking and cleaning. Abnormal target detection algorithm is used to monitor the designated area near the target while emitting high-energy laser. When abnormal target such as human is found to enter, protection mechanism is triggered in time to turn off laser which can prevent dangerous accidents.
- Published
- 2020
44. Remnant Liver-to-Standard Liver Volume Ratio Below 40% is Safe in Ex Vivo Liver Resection and Autotransplantation
- Author
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Xianwei Yang, Yiwen Qiu, Shu Shen, and Wentao Wang
- Subjects
Adult ,Male ,Echinococcosis, Hepatic ,medicine.medical_specialty ,medicine.medical_treatment ,Liver volume ,Urology ,030230 surgery ,Liver transplantation ,Transplantation, Autologous ,Resection ,Remnant liver ,03 medical and health sciences ,Postoperative Complications ,0302 clinical medicine ,Liver Function Tests ,medicine ,Hepatectomy ,Humans ,Hepatic Venous Outflow Obstruction ,Hepatic Alveolar Echinococcosis ,business.industry ,Gastroenterology ,Organ Size ,Middle Aged ,Autotransplantation ,Liver Transplantation ,Liver ,030220 oncology & carcinogenesis ,Female ,Surgery ,business ,Ex vivo - Abstract
The successful application of ex vivo liver resection and autotransplantation (ERAT) has gained widespread attention for the treatment of end-stage hepatic alveolar echinococcosis, which is considered to be unresectable by conventional methods due to extensive invasion of the extra- and intrahepatic vasculature. However, data on remnant liver volume (RLV) are limited, and the safe volume limit of remnant liver is still unclear. To determine the effect of liver volume in the technically developed era, we investigated the impact of the remnant liver-to-standard liver volume ratio (RLV/SLV) on the outcomes of ERAT. From February 2014 to May 2018, 56 ERAT procedures were performed. Eleven patients with an RLV/SLV
- Published
- 2018
45. Associations of polymorphisms in CTLA-4 and IL-18 with liver diseases: evidence from a meta-analysis
- Author
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Xianwei Yang, Wentao Wang, and Shenglong Zhang
- Subjects
0301 basic medicine ,education.field_of_study ,business.industry ,Population ,Biophysics ,Review manager ,Cell Biology ,Biochemistry ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Antigen ,CTLA-4 ,030220 oncology & carcinogenesis ,Meta-analysis ,Immunology ,Cytotoxic T cell ,Medicine ,Interleukin 18 ,Allele ,education ,business ,Molecular Biology - Abstract
Background Associations between polymorphisms in cytotoxic T-lymphocyte-associated antigen 4 (CTLA-4) / interleukin-18 (IL-18) and susceptibility to liver diseases were already reported by many publications. The aim of this meta-analysis was to clarify associations between polymorphisms in CTLA-4/IL-18 and liver diseases by combing the results of all relevant publications. Methods Eligible publications were searched from Pubmed, Embase, WOS and CNKI. The latest literature searching update was performed on 2nd October, 2019. We used Review Manager to combine the results of individual studies. Results Sixty-seven studies were included in this study. Combined results revealed that CTLA-4 rs231775 (dominant comparison: OR 0.83, 95 % CI 0.79-0.88; recessive comparison: OR 1.33, 95 % CI 1.23-1.43; allele comparison: OR 0.84, 95 % CI 0.78-0.90), IL-18 rs1946518 (dominant comparison: OR 0.85, 95 % CI 0.78-0.92; recessive comparison: OR 1.29, 95 % CI 1.13-1.48; allele comparison: OR 0.79, 95 % CI 0.71-0.88) and IL-18 rs187238 (dominant comparison: OR 1.28, 95 % CI 1.07-1.53; over-dominant comparison: OR 0.81, 95 % CI 0.68-0.97; allele comparison: OR 1.22, 95 % CI 1.07-1.39) polymorphisms were all significantly associated with liver diseases in the general population. We also obtained similar significant associations for CTLA-4 rs231775, CTLA-4 rs5742909, CTLA-4 rs3087243, IL-18 rs1946518 and IL-18 rs187238 polymorphisms in subgroup analyses. Conclusions Collectively, this meta-analysis proved that CTLA-4 rs231775, CTLA-4 rs5742909, CTLA-4 rs3087243, IL-18 rs1946518 and IL-18 rs187238 polymorphisms may confer susceptibility to various types of liver diseases.
- Published
- 2019
46. Selecting a suitable surgical treatment for hepatic angiomyolipoma: a retrospective analysis of 92 cases
- Author
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Shu Shen, Changli Lu, Yiwen Qiu, Wentao Wang, Chuanfen Lei, Lunan Yan, and Xianwei Yang
- Subjects
medicine.medical_specialty ,Hepatic Angiomyolipoma ,medicine.diagnostic_test ,business.industry ,Radiofrequency ablation ,Radiography ,medicine.medical_treatment ,Melanoma ,General Medicine ,medicine.disease ,Stem cell marker ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,law ,030220 oncology & carcinogenesis ,Liver biopsy ,medicine ,030211 gastroenterology & hepatology ,Surgery ,Radiology ,Hepatectomy ,business ,Pathological - Abstract
Background Hepatic angiomyolipoma (HAML) is a rare and difficult-to-diagnose liver tumour. The aim of this study was to summarize experiences in the management of HAML and to recommend a practical treatment strategy. Methods We retrospectively studied 92 patients who were diagnosed with HAML and analysed the clinical presentation, histopathological features and treatment of the tumours encountered at our institute from May 2009 to June 2016. Results The patients included 67 females and 25 males who underwent at least one radiographic examination. Sixty-eight patients underwent radical hepatectomy, two patients underwent liver biopsy, and 22 patients were treated with radiofrequency ablation after liver biopsy. The tumour cells correspondingly expressed both melanoma cell markers (HMB45, MART-1) and smooth muscle cell markers. Two patients were found to have tumour recurrence (2/92, 2.2%) after radical hepatectomy, and none of the patients died. Conclusion Diagnosis of HAML depends on pathological findings. The treatment strategy for HAML should be selected according to the tumour size, liver biopsy, location and clinical symptoms of HAML. Patients should be followed closely after surgery because of the malignant potential of HAML.
- Published
- 2017
47. Application of target tracking and abnormal target detection algorithm in power network security
- Author
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Xianwei, Yang, primary and Wang, Weifeng, additional
- Published
- 2020
- Full Text
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48. Another case of hepatic alveolar echinococcosis?
- Author
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Wentao Wang, Tao Wang, and Xianwei Yang
- Subjects
Hepatic alveolar echinococcosis ,Pathology ,medicine.medical_specialty ,Liver lesion ,business.industry ,lcsh:Surgery ,Medicine ,Surgery ,lcsh:RD1-811 ,business ,Primary cholangiocellular carcinosarcoma ,Hepatic Alveolar Echinococcosis - Published
- 2020
49. A genomic-clinical nomogram predicting recurrence-free survival for patients diagnosed with hepatocellular carcinoma
- Author
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Wentao Wang, Xianwei Yang, Junjie Kong, Zifei Zhang, Tao Wang, and Shu Shen
- Subjects
Oncology ,medicine.medical_specialty ,genetic structures ,Bioinformatics ,Hepatocellular carcinoma ,lcsh:Medicine ,Gastroenterology and Hepatology ,Logistic regression ,General Biochemistry, Genetics and Molecular Biology ,Nomogram ,03 medical and health sciences ,0302 clinical medicine ,Recurrence ,Recurrence free survival ,Internal medicine ,Medicine ,030304 developmental biology ,AJCC staging system ,0303 health sciences ,Receiver operating characteristic ,business.industry ,Proportional hazards model ,General Neuroscience ,lcsh:R ,General Medicine ,medicine.disease ,Decision curve analysis ,030220 oncology & carcinogenesis ,General Agricultural and Biological Sciences ,business - Abstract
Liver resection surgery is the most commonly used treatment strategy for patients diagnosed with hepatocellular carcinoma (HCC). However, there is still a chance for recurrence in these patients despite the survival benefits of this procedure. This study aimed to explore recurrence-related genes (RRGs) and establish a genomic-clinical nomogram for predicting postoperative recurrence in HCC patients. A total of 123 differently expressed genes and three RRGs (PZP, SPP2, and PRC1) were identified from online databases via Cox regression and LASSO logistic regression analyses and a gene-based risk model containing RRGs was then established. The Harrell’s concordance index (C-index), receiver operating characteristic (ROC) curves and calibration curves showed that the model performed well. Finally, a genomic-clinical nomogram incorporating the gene-based risk model, AJCC staging system, and Eastern Cooperative Oncology Group performance status was constructed to predict the 1-, 2-, and 3-year recurrence-free survival rates (RFS) for HCC patients. The C-index, ROC analysis, and decision curve analysis were good indicators of the nomogram’s performance. In conclusion, we identified three reliable RRGs associated with the recurrence of cancer and constructed a nomogram that performed well in predicting RFS for HCC patients. These findings could enrich our understanding of the mechanisms for HCC recurrence, help surgeons predict patients’ prognosis, and promote HCC treatment.
- Published
- 2019
50. Initial data release and announcement of the Fish10K: Fish 10,000 Genomes Project
- Author
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Jing Wang, Suyu Zhang, Mengqi Zhang, Huanming Yang, Shunping He, Guanngyi Fan, Xianwei Yang, Yue Chang, Inge Seim, Shanshan Liu, Kun Wang, Yue Song, Yongxin Li, Xin Liu, He Zhang, Chenguang Feng, Xun Xu, Lili Yu, Wen Wang, Liandong Yang, Nansheng Chen, and Xiaoyun Huang
- Subjects
biology ,business.industry ,Environmental resource management ,Vertebrate ,Genomics ,Context (language use) ,Genome ,Workflow ,Procurement ,Geography ,Work (electrical) ,biology.animal ,%22">Fish ,business - Abstract
With more than 30,000 species, fish are the largest and most ancient vertebrate group. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. Here, we announce the Fish10K project, an international collaborative project or initiative? aiming to sequence 10,000 representative fish genomes under a systematic context within ten years, and officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, and sequencing and assembly strategies. To illustrate, we present the genomes of ten fish species from a cohort of 93 species chosen for technology development.
- Published
- 2019
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