1. Genome-wide investigation and analysis of U-box E3 ubiquitin-protein ligase gene family in kiwifruit (<italic>Actinidia chinensis</italic>) in response to the yeast antagonist, <italic>Wickerhamomyces anomalus</italic>.
- Author
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Su, Yingying, Wang, Kaili, Lu, Yuchun, Zhao, Qianhua, Ackah, Michael, Yang, Qiya, and Zhang, Hongyin
- Subjects
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CULTIVARS , *GENE families , *PLANT development , *CHROMOSOMES , *UBIQUITIN , *KIWIFRUIT - Abstract
Although the ubiquitin ligase U-box protein family is a vital component of plant development and stress response, the exact role of kiwifruit
U-box genes family is not known. The study identified 73 putativeU-box genes from the kiwifruit genome. Chromosomal localisation, phylogenetic analysis, physicochemical properties, gene structure, motifs, and promoters of these genes were analysed. Distribution ofActinidia chinensis PUB (AcPUB ) genes exhibited varying densities across 27 chromosomes. The study found that U-box clusters were classified into groups I–VII in phylogenetic analyses of a variety of plants, including kiwifruit,Arabidopsis thaliana , and rice, with most of the genes in kiwifruit being related to rice. The conserved motif analyses revealed that all theAcPUB genes have typical U-box structural domains. Analysis of the cis-acting elements suggested thatAcPUBs expression may be responsive to several hormones and stresses. RNA-Seq analysis showed that six kiwifruitU-box genes were differentially expressed after induction byWickerhamomyces anomalus , suggesting a potential involvement of theseU-box genes in the kiwifruit's response toW. anomalus , which might include mechanisms related to resistance. Overall, our findings provide valuable insights into the function and structure ofU-box genes that will help develop new genomic technologies and study plant resistance. [ABSTRACT FROM AUTHOR]- Published
- 2024
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