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1. North Pontic crossroads: Mobility in Ukraine from the Bronze Age to the early modern period

Author

Saag, Lehti, primary, Utevska, Olga, additional, Zadnikov, Stanislav, additional, Shramko, Iryna, additional, Gorbenko, Kyrylo, additional, Bandrivskyi, Mykola, additional, Pavliv, Dmytro, additional, Bruyako, Igor, additional, Grechko, Denys, additional, Okatenko, Vitalii, additional, Toshev, Gennadi, additional, Andrukh, Svitlana, additional, Radziyevska, Vira, additional, Buynov, Yurii, additional, Kotenko, Viktoriia, additional, Smyrnov, Oleksandr, additional, Petrauskas, Oleg, additional, Magomedov, Borys, additional, Didenko, Serhii, additional, Heiko, Anatolii, additional, Reida, Roman, additional, Sapiehin, Serhii, additional, Aksonov, Viktor, additional, Laptiev, Oleksii, additional, Terskyi, Svyatoslav, additional, Skorokhod, Viacheslav, additional, Zhyhola, Vitalii, additional, Sytyi, Yurii, additional, Jarve, Mari, additional, Scheib, Christiana Lyn, additional, Anastasiadou, Kyriaki, additional, Kelly, Monica, additional, Williams, Mia, additional, Silva, Marina, additional, Barrington, Christopher, additional, Gilardet, Alexandre, additional, Macleod, Ruairidh, additional, Skoglund, Pontus, additional, and Thomas, Mark G, additional

Published
2024
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2. Genomic analyses inform on migration events during the peopling of Eurasia

Author

Pagani, Luca, Lawson, Daniel John, Jagoda, Evelyn, Mörseburg, Alexander, Eriksson, Anders, Mitt, Mario, Clemente, Florian, Hudjashov, Georgi, DeGiorgio, Michael, Saag, Lauri, Wall, Jeffrey D, Cardona, Alexia, Mägi, Reedik, Sayres, Melissa A Wilson, Kaewert, Sarah, Inchley, Charlotte, Scheib, Christiana L, Järve, Mari, Karmin, Monika, Jacobs, Guy S, Antao, Tiago, Iliescu, Florin Mircea, Kushniarevich, Alena, Ayub, Qasim, Tyler-Smith, Chris, Xue, Yali, Yunusbayev, Bayazit, Tambets, Kristiina, Mallick, Chandana Basu, Saag, Lehti, Pocheshkhova, Elvira, Andriadze, George, Muller, Craig, Westaway, Michael C, Lambert, David M, Zoraqi, Grigor, Turdikulova, Shahlo, Dalimova, Dilbar, Sabitov, Zhaxylyk, Sultana, Gazi Nurun Nahar, Lachance, Joseph, Tishkoff, Sarah, Momynaliev, Kuvat, Isakova, Jainagul, Damba, Larisa D, Gubina, Marina, Nymadawa, Pagbajabyn, Evseeva, Irina, Atramentova, Lubov, Utevska, Olga, Ricaut, François-Xavier, Brucato, Nicolas, Sudoyo, Herawati, Letellier, Thierry, Cox, Murray P, Barashkov, Nikolay A, Škaro, Vedrana, Mulahasanovic´, Lejla, Primorac, Dragan, Sahakyan, Hovhannes, Mormina, Maru, Eichstaedt, Christina A, Lichman, Daria V, Abdullah, Syafiq, Chaubey, Gyaneshwer, Wee, Joseph TS, Mihailov, Evelin, Karunas, Alexandra, Litvinov, Sergei, Khusainova, Rita, Ekomasova, Natalya, Akhmetova, Vita, Khidiyatova, Irina, Marjanović, Damir, Yepiskoposyan, Levon, Behar, Doron M, Balanovska, Elena, Metspalu, Andres, Derenko, Miroslava, Malyarchuk, Boris, Voevoda, Mikhail, Fedorova, Sardana A, Osipova, Ludmila P, Lahr, Marta Mirazón, Gerbault, Pascale, Leavesley, Matthew, Migliano, Andrea Bamberg, Petraglia, Michael, Balanovsky, Oleg, Khusnutdinova, Elza K, Metspalu, Ene, Thomas, Mark G, Manica, Andrea, Nielsen, Rasmus, Villems, Richard, Willerslev, Eske, Kivisild, Toomas, and Metspalu, Mait

Subjects
Human Genome, Biotechnology, Genetics, Generic health relevance, Africa, Animals, Asia, Datasets as Topic, Estonia, Europe, Fossils, Gene Flow, Genetics, Population, Genome, Human, Genomics, Heterozygote, History, Ancient, Human Migration, Humans, Native Hawaiian or Other Pacific Islander, Neanderthals, New Guinea, Population Dynamics, Racial Groups, General Science & Technology
Abstract

High-coverage whole-genome sequence studies have so far focused on a limited number of geographically restricted populations, or been targeted at specific diseases, such as cancer. Nevertheless, the availability of high-resolution genomic data has led to the development of new methodologies for inferring population history and refuelled the debate on the mutation rate in humans. Here we present the Estonian Biocentre Human Genome Diversity Panel (EGDP), a dataset of 483 high-coverage human genomes from 148 populations worldwide, including 379 new genomes from 125 populations, which we group into diversity and selection sets. We analyse this dataset to refine estimates of continent-wide patterns of heterozygosity, long- and short-distance gene flow, archaic admixture, and changes in effective population size through time as well as for signals of positive or balancing selection. We find a genetic signature in present-day Papuans that suggests that at least 2% of their genome originates from an early and largely extinct expansion of anatomically modern humans (AMHs) out of Africa. Together with evidence from the western Asian fossil record, and admixture between AMHs and Neanderthals predating the main Eurasian expansion, our results contribute to the mounting evidence for the presence of AMHs out of Africa earlier than 75,000 years ago.

Published
2016

3. A recent bottleneck of Y chromosome diversity coincides with a global change in culture

Author

Karmin, Monika, Saag, Lauri, Vicente, Mário, Sayres, Melissa A Wilson, Järve, Mari, Talas, Ulvi Gerst, Rootsi, Siiri, Ilumäe, Anne-Mai, Mägi, Reedik, Mitt, Mario, Pagani, Luca, Puurand, Tarmo, Faltyskova, Zuzana, Clemente, Florian, Cardona, Alexia, Metspalu, Ene, Sahakyan, Hovhannes, Yunusbayev, Bayazit, Hudjashov, Georgi, DeGiorgio, Michael, Loogväli, Eva-Liis, Eichstaedt, Christina, Eelmets, Mikk, Chaubey, Gyaneshwer, Tambets, Kristiina, Litvinov, Sergei, Mormina, Maru, Xue, Yali, Ayub, Qasim, Zoraqi, Grigor, Korneliussen, Thorfinn Sand, Akhatova, Farida, Lachance, Joseph, Tishkoff, Sarah, Momynaliev, Kuvat, Ricaut, François-Xavier, Kusuma, Pradiptajati, Razafindrazaka, Harilanto, Pierron, Denis, Cox, Murray P, Sultana, Gazi Nurun Nahar, Willerslev, Rane, Muller, Craig, Westaway, Michael, Lambert, David, Skaro, Vedrana, Kovačevic´, Lejla, Turdikulova, Shahlo, Dalimova, Dilbar, Khusainova, Rita, Trofimova, Natalya, Akhmetova, Vita, Khidiyatova, Irina, Lichman, Daria V, Isakova, Jainagul, Pocheshkhova, Elvira, Sabitov, Zhaxylyk, Barashkov, Nikolay A, Nymadawa, Pagbajabyn, Mihailov, Evelin, Seng, Joseph Wee Tien, Evseeva, Irina, Migliano, Andrea Bamberg, Abdullah, Syafiq, Andriadze, George, Primorac, Dragan, Atramentova, Lubov, Utevska, Olga, Yepiskoposyan, Levon, Marjanovic´, Damir, Kushniarevich, Alena, Behar, Doron M, Gilissen, Christian, Vissers, Lisenka, Veltman, Joris A, Balanovska, Elena, Derenko, Miroslava, Malyarchuk, Boris, Metspalu, Andres, Fedorova, Sardana, Eriksson, Anders, Manica, Andrea, Mendez, Fernando L, Karafet, Tatiana M, Veeramah, Krishna R, Bradman, Neil, Hammer, Michael F, Osipova, Ludmila P, Balanovsky, Oleg, Khusnutdinova, Elza K, Johnsen, Knut, Remm, Maido, Thomas, Mark G, Tyler-Smith, Chris, Underhill, Peter A, Willerslev, Eske, Nielsen, Rasmus, Metspalu, Mait, Villems, Richard, and Kivisild, Toomas

Subjects
Biological Sciences, Genetics, Human Genome, Base Sequence, Chromosomes, Human, Y, DNA, Mitochondrial, Evolution, Molecular, Genetic Variation, Genetics, Population, Haplotypes, Humans, Male, Models, Genetic, Phylogeny, Racial Groups, Sequence Analysis, DNA, Medical and Health Sciences, Bioinformatics
Abstract

It is commonly thought that human genetic diversity in non-African populations was shaped primarily by an out-of-Africa dispersal 50-100 thousand yr ago (kya). Here, we present a study of 456 geographically diverse high-coverage Y chromosome sequences, including 299 newly reported samples. Applying ancient DNA calibration, we date the Y-chromosomal most recent common ancestor (MRCA) in Africa at 254 (95% CI 192-307) kya and detect a cluster of major non-African founder haplogroups in a narrow time interval at 47-52 kya, consistent with a rapid initial colonization model of Eurasia and Oceania after the out-of-Africa bottleneck. In contrast to demographic reconstructions based on mtDNA, we infer a second strong bottleneck in Y-chromosome lineages dating to the last 10 ky. We hypothesize that this bottleneck is caused by cultural changes affecting variance of reproductive success among males.

Published
2015

4. Ancient human genomes suggest three ancestral populations for present-day Europeans

Author

Lazaridis, Iosif, Patterson, Nick, Mittnik, Alissa, Renaud, Gabriel, Mallick, Swapan, Kirsanow, Karola, Sudmant, Peter H., Schraiber, Joshua G., Castellano, Sergi, Lipson, Mark, Berger, Bonnie, Economou, Christos, Bollongino, Ruth, Fu, Qiaomei, Bos, Kirsten I., Nordenfelt, Susanne, Li, Heng, de Filippo, Cesare, Prüfer, Kay, Sawyer, Susanna, Posth, Cosimo, Haak, Wolfgang, Hallgren, Fredrik, Fornander, Elin, Rohland, Nadin, Delsate, Dominique, Francken, Michael, Guinet, Jean-Michel, Wahl, Joachim, Ayodo, George, Babiker, Hamza A., Bailliet, Graciela, Balanovska, Elena, Balanovsky, Oleg, Barrantes, Ramiro, Bedoya, Gabriel, Ben-Ami, Haim, Bene, Judit, Berrada, Fouad, Bravi, Claudio M., Brisighelli, Francesca, Busby, George, Cali, Francesco, Churnosov, Mikhail, Cole, David E. C., Corach, Daniel, Damba, Larissa, van Driem, George, Dryomov, Stanislav, Dugoujon, Jean-Michel, Fedorova, Sardana A., Romero, Irene Gallego, Gubina, Marina, Hammer, Michael, Henn, Brenna, Hervig, Tor, Hodoglugil, Ugur, Jha, Aashish R., Karachanak-Yankova, Sena, Khusainova, Rita, Khusnutdinova, Elza, Kittles, Rick, Kivisild, Toomas, Klitz, William, Kučinskas, Vaidutis, Kushniarevich, Alena, Laredj, Leila, Litvinov, Sergey, Loukidis, Theologos, Mahley, Robert W., Melegh, Béla, Metspalu, Ene, Molina, Julio, Mountain, Joanna, Näkkäläjärvi, Klemetti, Nesheva, Desislava, Nyambo, Thomas, Osipova, Ludmila, Parik, Jüri, Platonov, Fedor, Posukh, Olga, Romano, Valentino, Rothhammer, Francisco, Rudan, Igor, Ruizbakiev, Ruslan, Sahakyan, Hovhannes, Sajantila, Antti, Salas, Antonio, Starikovskaya, Elena B., Tarekegn, Ayele, Toncheva, Draga, Turdikulova, Shahlo, Uktveryte, Ingrida, Utevska, Olga, Vasquez, René, Villena, Mercedes, Voevoda, Mikhail, Winkler, Cheryl, Yepiskoposyan, Levon, Zalloua, Pierre, Zemunik, Tatijana, Cooper, Alan, Capelli, Cristian, Thomas, Mark G., Ruiz-Linares, Andres, Tishkoff, Sarah A., Singh, Lalji, Thangaraj, Kumarasamy, Villems, Richard, Comas, David, Sukernik, Rem, Metspalu, Mait, Meyer, Matthias, Eichler, Evan E., Burger, Joachim, Slatkin, Montgomery, Pääbo, Svante, Kelso, Janet, Reich, David, and Krause, Johannes

Subjects
Quantitative Biology - Populations and Evolution
Abstract

We sequenced genomes from a $\sim$7,000 year old early farmer from Stuttgart in Germany, an $\sim$8,000 year old hunter-gatherer from Luxembourg, and seven $\sim$8,000 year old hunter-gatherers from southern Sweden. We analyzed these data together with other ancient genomes and 2,345 contemporary humans to show that the great majority of present-day Europeans derive from at least three highly differentiated populations: West European Hunter-Gatherers (WHG), who contributed ancestry to all Europeans but not to Near Easterners; Ancient North Eurasians (ANE), who were most closely related to Upper Paleolithic Siberians and contributed to both Europeans and Near Easterners; and Early European Farmers (EEF), who were mainly of Near Eastern origin but also harbored WHG-related ancestry. We model these populations' deep relationships and show that EEF had $\sim$44% ancestry from a "Basal Eurasian" lineage that split prior to the diversification of all other non-African lineages.

Published
2013
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5. The genetic history of admixture across inner Eurasia

Author

Jeong, Choongwon, Balanovsky, Oleg, Lukianova, Elena, Kahbatkyzy, Nurzhibek, Flegontov, Pavel, Zaporozhchenko, Valery, Immel, Alexander, Wang, Chuan-Chao, Ixan, Olzhas, Khussainova, Elmira, Bekmanov, Bakhytzhan, Zaibert, Victor, Lavryashina, Maria, Pocheshkhova, Elvira, Yusupov, Yuldash, Agdzhoyan, Anastasiya, Koshel, Sergey, Bukin, Andrei, Nymadawa, Pagbajabyn, Turdikulova, Shahlo, Dalimova, Dilbar, Churnosov, Mikhail, Skhalyakho, Roza, Daragan, Denis, Bogunov, Yuri, Bogunova, Anna, Shtrunov, Alexandr, Dubova, Nadezhda, Zhabagin, Maxat, Yepiskoposyan, Levon, Churakov, Vladimir, Pislegin, Nikolay, Damba, Larissa, Saroyants, Ludmila, Dibirova, Khadizhat, Atramentova, Lubov, Utevska, Olga, Idrisov, Eldar, Kamenshchikova, Evgeniya, Evseeva, Irina, Metspalu, Mait, Outram, Alan K., Robbeets, Martine, Djansugurova, Leyla, Balanovska, Elena, Schiffels, Stephan, Haak, Wolfgang, Reich, David, and Krause, Johannes

Published
2019
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6. Human Y Chromosome Haplogroup N: A Non-trivial Time-Resolved Phylogeography that Cuts across Language Families

Author

Ilumäe, Anne-Mai, Reidla, Maere, Chukhryaeva, Marina, Järve, Mari, Post, Helen, Karmin, Monika, Saag, Lauri, Agdzhoyan, Anastasiya, Kushniarevich, Alena, Litvinov, Sergey, Ekomasova, Natalya, Tambets, Kristiina, Metspalu, Ene, Khusainova, Rita, Yunusbayev, Bayazit, Khusnutdinova, Elza K., Osipova, Ludmila P., Fedorova, Sardana, Utevska, Olga, Koshel, Sergey, Balanovska, Elena, Behar, Doron M., Balanovsky, Oleg, Kivisild, Toomas, Underhill, Peter A., Villems, Richard, and Rootsi, Siiri

Published
2016
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9. Ancient human genomes suggest three ancestral populations for present-day Europeans

Author

Lazaridis, Iosif, Patterson, Nick, Mittnik, Alissa, Renaud, Gabriel, Mallick, Swapan, Kirsanow, Karola, Sudmant, Peter H., Schraiber, Joshua G., Castellano, Sergi, Lipson, Mark, Berger, Bonnie, Economou, Christos, Bollongino, Ruth, Fu, Qiaomei, Bos, Kirsten I., Nordenfelt, Susanne, Li, Heng, de Filippo, Cesare, Prüfer, Kay, Sawyer, Susanna, Posth, Cosimo, Haak, Wolfgang, Hallgren, Fredrik, Fornander, Elin, Rohland, Nadin, Delsate, Dominique, Francken, Michael, Guinet, Jean-Michel, Wahl, Joachim, Ayodo, George, Babiker, Hamza A., Bailliet, Graciela, Balanovska, Elena, Balanovsky, Oleg, Barrantes, Ramiro, Bedoya, Gabriel, Ben-Ami, Haim, Bene, Judit, Berrada, Fouad, Bravi, Claudio M., Brisighelli, Francesca, Busby, George B. J., Cali, Francesco, Churnosov, Mikhail, Cole, David E. C., Corach, Daniel, Damba, Larissa, van Driem, George, Dryomov, Stanislav, Dugoujon, Jean-Michel, Fedorova, Sardana A., Gallego Romero, Irene, Gubina, Marina, Hammer, Michael, Henn, Brenna M., Hervig, Tor, Hodoglugil, Ugur, Jha, Aashish R., Karachanak-Yankova, Sena, Khusainova, Rita, Khusnutdinova, Elza, Kittles, Rick, Kivisild, Toomas, Klitz, William, Kučinskas, Vaidutis, Kushniarevich, Alena, Laredj, Leila, Litvinov, Sergey, Loukidis, Theologos, Mahley, Robert W., Melegh, Béla, Metspalu, Ene, Molina, Julio, Mountain, Joanna, Näkkäläjärvi, Klemetti, Nesheva, Desislava, Nyambo, Thomas, Osipova, Ludmila, Parik, Jüri, Platonov, Fedor, Posukh, Olga, Romano, Valentino, Rothhammer, Francisco, Rudan, Igor, Ruizbakiev, Ruslan, Sahakyan, Hovhannes, Sajantila, Antti, Salas, Antonio, Starikovskaya, Elena B., Tarekegn, Ayele, Toncheva, Draga, Turdikulova, Shahlo, Uktveryte, Ingrida, Utevska, Olga, Vasquez, René, Villena, Mercedes, Voevoda, Mikhail, Winkler, Cheryl A., Yepiskoposyan, Levon, Zalloua, Pierre, Zemunik, Tatijana, Cooper, Alan, Capelli, Cristian, Thomas, Mark G., Ruiz-Linares, Andres, Tishkoff, Sarah A., Singh, Lalji, Thangaraj, Kumarasamy, Villems, Richard, Comas, David, Sukernik, Rem, Metspalu, Mait, Meyer, Matthias, Eichler, Evan E., Burger, Joachim, Slatkin, Montgomery, Pääbo, Svante, Kelso, Janet, Reich, David, and Krause, Johannes

Published
2014
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11. Shifts in the Genetic Landscape of the Western Eurasian Steppe Associated with the Beginning and End of the Scythian Dominance

Author

Järve, Mari, Saag, Lehti, Scheib, Christiana Lyn, Pathak, Ajai K., Montinaro, Francesco, Pagani, Luca, Flores, Rodrigo, Guellil, Meriam, Saag, Lauri, Tambets, Kristiina, Kushniarevich, Alena, Solnik, Anu, Varul, Liivi, Zadnikov, Stanislav, Petrauskas, Oleg, Avramenko, Maryana, Magomedov, Boris, Didenko, Serghii, Toshev, Gennadi, Bruyako, Igor, Grechko, Denys, Okatenko, Vitalii, Gorbenko, Kyrylo, Smyrnov, Oleksandr, Heiko, Anatolii, Reida, Roman, Sapiehin, Serheii, Sirotin, Sergey, Tairov, Aleksandr, Beisenov, Arman, Starodubtsev, Maksim, Vasilev, Vitali, Nechvaloda, Alexei, Atabiev, Biyaslan, Litvinov, Sergey, Ekomasova, Natalia, Dzhaubermezov, Murat, Voroniatov, Sergey, Utevska, Olga, Shramko, Irina, Khusnutdinova, Elza, Metspalu, Mait, Savelev, Nikita, Kriiska, Aivar, Kivisild, Toomas, and Villems, Richard

Published
2019
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12. Shifts in the Genetic Landscape of the Western Eurasian Steppe Associated with the Beginning and End of the Scythian Dominance

Author

Järve, Mari, primary, Saag, Lehti, additional, Scheib, Christiana Lyn, additional, Pathak, Ajai K., additional, Montinaro, Francesco, additional, Pagani, Luca, additional, Flores, J. Rodrigo, additional, Guellil, Meriam, additional, Saag, Lauri, additional, Tambets, Kristiina, additional, Kushniarevich, Alena, additional, Solnik, Anu, additional, Varul, Liivi, additional, Zadnikov, Stanislav, additional, Petrauskas, Oleg, additional, Avramenko, Maryana, additional, Magomedov, Boris, additional, Didenko, Serghii, additional, Toshev, Gennadi, additional, Bruyako, Igor, additional, Grechko, Denys, additional, Okatenko, Vitalii, additional, Gorbenko, Kyrylo, additional, Smyrnov, Oleksandr, additional, Heiko, Anatolii, additional, Reida, Roman, additional, Sapiehin, Serheii, additional, Sirotin, Sergey, additional, Tairov, Aleksandr, additional, Beisenov, Arman, additional, Starodubtsev, Maksim, additional, Vasilev, Vitali, additional, Nechvaloda, Alexei, additional, Atabiev, Biyaslan, additional, Litvinov, Sergey, additional, Ekomasova, Natalia, additional, Dzhaubermezov, Murat, additional, Voroniatov, Sergey, additional, Utevska, Olga, additional, Shramko, Irina, additional, Khusnutdinova, Elza, additional, Metspalu, Mait, additional, Savelev, Nikita, additional, Kriiska, Aivar, additional, Kivisild, Toomas, additional, and Villems, Richard, additional

Published
2019
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13. Characterizing the genetic history of admixture across inner Eurasia

Author

Jeong, Choongwon, primary, Balanovsky, Oleg, additional, Lukianova, Elena, additional, Kahbatkyzy, Nurzhibek, additional, Flegontov, Pavel, additional, Zaporozhchenko, Valery, additional, Immel, Alexander, additional, Wang, Chuan-Chao, additional, Ixan, Olzhas, additional, Khussainova, Elmira, additional, Bekmanov, Bakhytzhan, additional, Zaibert, Victor, additional, Lavryashina, Maria, additional, Pocheshkhova, Elvira, additional, Yusupov, Yuldash, additional, Agdzhoyan, Anastasiya, additional, Sergey, Koshel, additional, Bukin, Andrei, additional, Nymadawa, Pagbajabyn, additional, Churnosov, Michail, additional, Skhalyakho, Roza, additional, Daragan, Denis, additional, Bogunov, Yuri, additional, Bogunova, Anna, additional, Shtrunov, Alexandr, additional, Dubova, Nadezda, additional, Zhabagin, Maxat, additional, Yepiskoposyan, Levon, additional, Churakov, Vladimir, additional, Pislegin, Nikolay, additional, Damba, Larissa, additional, Saroyants, Ludmila, additional, Dibirova, Khadizhat, additional, Artamentova, Lubov, additional, Utevska, Olga, additional, Idrisov, Eldar, additional, Kamenshchikova, Evgeniya, additional, Evseeva, Irina, additional, Metspalu, Mait, additional, Robbeets, Martine, additional, Djansugurova, Leyla, additional, Balanovska, Elena, additional, Schiffels, Stephan, additional, Haak, Wolfgang, additional, Reich, David, additional, and Krause, Johannes, additional

Published
2018
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14. Reproductive biology and ecological strategies of three species of medicinal leeches (genus Hirudo)

Author

Petrauskienė, Laima, Utevska, Olga, and Utevsky, Serge

Subjects
Biodiversity, Taxonomy
Abstract

Petrauskienė, Laima, Utevska, Olga, Utevsky, Serge (2011): Reproductive biology and ecological strategies of three species of medicinal leeches (genus Hirudo). Journal of Natural History 45 (11-12): 737-747, DOI: 10.1080/00222933.2010.535918, URL: http://dx.doi.org/10.1080/00222933.2010.535918

Published
2011

15. Deep Phylogenetic Analysis of Haplogroup G1 Provides Estimates of SNP and STR Mutation Rates on the Human Y-Chromosome and Reveals Migrations of Iranic Speakers

Author

Balanovsky, Oleg, primary, Zhabagin, Maxat, additional, Agdzhoyan, Anastasiya, additional, Chukhryaeva, Marina, additional, Zaporozhchenko, Valery, additional, Utevska, Olga, additional, Highnam, Gareth, additional, Sabitov, Zhaxylyk, additional, Greenspan, Elliott, additional, Dibirova, Khadizhat, additional, Skhalyakho, Roza, additional, Kuznetsova, Marina, additional, Koshel, Sergey, additional, Yusupov, Yuldash, additional, Nymadawa, Pagbajabyn, additional, Zhumadilov, Zhaxybay, additional, Pocheshkhova, Elvira, additional, Haber, Marc, additional, A. Zalloua, Pierre, additional, Yepiskoposyan, Levon, additional, Dybo, Anna, additional, Tyler-Smith, Chris, additional, and Balanovska, Elena, additional

Published
2015
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16. Ancient human genomes suggest three ancestral populations for present-day Europeans

Author

Lazaridis, Iosif, primary, Patterson, Nick, additional, Mittnik, Alissa, additional, Renaud, Gabriel, additional, Mallick, Swapan, additional, Kirsanow, Karola, additional, Sudmant, Peter H., additional, Schraiber, Joshua G., additional, Castellano, Sergi, additional, Lipson, Mark, additional, Berger, Bonnie, additional, Economou, Christos, additional, Bollongino, Ruth, additional, Fu, Qiaomei, additional, Bos, Kirsten, additional, Nordenfelt, Susanne, additional, Li, Heng, additional, de Filippo, Cesare, additional, Prüfer, Kay, additional, Sawyer, Susanna, additional, Posth, Cosimo, additional, Haak, Wolfgang, additional, Hallgren, Fredrik, additional, Fornander, Elin, additional, Rohland, Nadin, additional, Delsate, Dominique, additional, Francken, Michael, additional, Guinet, Jean-Michel, additional, Wahl, Joachim, additional, Ayodo, George, additional, Babiker, Hamza A., additional, Baillet, Graciela, additional, Balanovska, Elena, additional, Balanovsky, Oleg, additional, Barrantes, Ramiro, additional, Bedoya, Gabriel, additional, Ben-Ami, Haim, additional, Bene, Judit, additional, Berrada, Fouad, additional, Bravi, Claudio M., additional, Brisighelli, Francesca, additional, Busby, George B.J., additional, Cali, Francesco, additional, Churnosov, Mikhail, additional, Cole, David E.C., additional, Corach, Daniel, additional, Damba, Larissa, additional, van Driem, George, additional, Dryomov, Stanislav, additional, Dugoujon, Jean-Michel, additional, Fedorova, Sardana A., additional, Gallego Romero, Irene, additional, Gubina, Marina, additional, Hammer, Michael, additional, Henn, Brenna, additional, Helvig, Tor, additional, Hodoglugil, Ugur, additional, Jha, Aashish R., additional, Karachanak-Yankova, Sena, additional, Khusainova, Rita, additional, Khusnutdinova, Elza, additional, Kittles, Rick, additional, Kivisild, Toomas, additional, Klitz, William, additional, Kučinskas, Vaidutis, additional, Kushniarevich, Alena, additional, Laredj, Leila, additional, Litvinov, Sergey, additional, Loukidis, Theologos, additional, Mahley, Robert W., additional, Melegh, Béla, additional, Metspalu, Ene, additional, Molina, Julio, additional, Mountain, Joanna, additional, Näkkäläjärvi, Klemetti, additional, Nesheva, Desislava, additional, Nyambo, Thomas, additional, Osipova, Ludmila, additional, Parik, Jüri, additional, Platonov, Fedor, additional, Posukh, Olga L., additional, Romano, Valentino, additional, Rothhammer, Francisco, additional, Rudan, Igor, additional, Ruizbakiev, Ruslan, additional, Sahakyan, Hovhannes, additional, Sajantila, Antti, additional, Salas, Antonio, additional, Starikovskaya, Elena B., additional, Tarekegn, Ayele, additional, Toncheva, Draga, additional, Turdikulova, Shahlo, additional, Uktveryte, Ingrida, additional, Utevska, Olga, additional, Vasquez, René, additional, Villena, Mercedes, additional, Voevoda, Mikhail, additional, Winkler, Cheryl, additional, Yepiskoposyan, Levon, additional, Zalloua, Pierre, additional, Zemunik, Tatijana, additional, Cooper, Alan, additional, Capelli, Cristian, additional, Thomas, Mark G., additional, Ruiz-Linares, Andres, additional, Tishkoff, Sarah A., additional, Singh, Lalji, additional, Thangaraj, Kumarasamy, additional, Villems, Richard, additional, Comas, David, additional, Sukernik, Rem, additional, Metspalu, Mait, additional, Meyer, Matthias, additional, Eichler, Evan E., additional, Burger, Joachim, additional, Slatkin, Montgomery, additional, Pååbo, Svante, additional, Kelso, Janet, additional, Reich, David, additional, and Krause, Johannes, additional

Published
2013
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17. Genetic affinities of Ukrainians from the maternal perspective

Author

Pshenichnov, Andrey, primary, Balanovsky, Oleg, additional, Utevska, Olga, additional, Metspalu, Ene, additional, Zaporozhchenko, Valery, additional, Agdzhoyan, Anastasia, additional, Churnosov, Mikhail, additional, Atramentova, Lyubov, additional, and Balanovska, Elena, additional

Published
2013
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20. Genetic Heritage of the Balto-Slavic Speaking Populations: A Synthesis of Autosomal, Mitochondrial and Y-Chromosomal Data.

Author

Kushniarevich, Alena, Utevska, Olga, Chuhryaeva, Marina, Agdzhoyan, Anastasia, Dibirova, Khadizhat, Uktveryte, Ingrida, Möls, Märt, Mulahasanovic, Lejla, Pshenichnov, Andrey, Frolova, Svetlana, Shanko, Andrey, Metspalu, Ene, Reidla, Maere, Tambets, Kristiina, Tamm, Erika, Koshel, Sergey, Zaporozhchenko, Valery, Atramentova, Lubov, Kučinskas, Vaidutis, and Davydenko, Oleg

Subjects
*BALTIC languages, *SLAVIC languages, *ELOCUTION, *LOCUS (Genetics), *MITOCHONDRIAL DNA, *AFFILIATION (Psychology)
Abstract

The Slavic branch of the Balto-Slavic sub-family of Indo-European languages underwent rapid divergence as a result of the spatial expansion of its speakers from Central-East Europe, in early medieval times. This expansion–mainly to East Europe and the northern Balkans–resulted in the incorporation of genetic components from numerous autochthonous populations into the Slavic gene pools. Here, we characterize genetic variation in all extant ethnic groups speaking Balto-Slavic languages by analyzing mitochondrial DNA (n = 6,876), Y-chromosomes (n = 6,079) and genome-wide SNP profiles (n = 296), within the context of other European populations. We also reassess the phylogeny of Slavic languages within the Balto-Slavic branch of Indo-European. We find that genetic distances among Balto-Slavic populations, based on autosomal and Y-chromosomal loci, show a high correlation (0.9) both with each other and with geography, but a slightly lower correlation (0.7) with mitochondrial DNA and linguistic affiliation. The data suggest that genetic diversity of the present-day Slavs was predominantly shaped in situ, and we detect two different substrata: ‘central-east European’ for West and East Slavs, and ‘south-east European’ for South Slavs. A pattern of distribution of segments identical by descent between groups of East-West and South Slavs suggests shared ancestry or a modest gene flow between those two groups, which might derive from the historic spread of Slavic people. [ABSTRACT FROM AUTHOR]

Published
2015
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21. Genomic analyses inform on migration events during the peopling of Eurasia

Author

Pagani, Luca, Lawson, Daniel John, Jagoda, Evelyn, Mörseburg, Alexander, Eriksson, Anders, Mitt, Mario, Clemente, Florian, Hudjashov, Georgi, DeGiorgio, Michael, Saag, Lauri, Wall, Jeffrey D, Cardona, Alexia, Mägi, Reedik, Wilson Sayres, Melissa A, Kaewert, Sarah, Inchley, Charlotte, Scheib, Christiana L, Järve, Mari, Karmin, Monika, Jacobs, Guy S, Antao, Tiago, Iliescu, Florin Mircea, Kushniarevich, Alena, Ayub, Qasim, Tyler-Smith, Chris, Xue, Yali, Yunusbayev, Bayazit, Tambets, Kristiina, Mallick, Chandana Basu, Saag, Lehti, Pocheshkhova, Elvira, Andriadze, George, Muller, Craig, Westaway, Michael C, Lambert, David M, Zoraqi, Grigor, Turdikulova, Shahlo, Dalimova, Dilbar, Sabitov, Zhaxylyk, Sultana, Gazi Nurun Nahar, Lachance, Joseph, Tishkoff, Sarah, Momynaliev, Kuvat, Isakova, Jainagul, Damba, Larisa D, Gubina, Marina, Nymadawa, Pagbajabyn, Evseeva, Irina, Atramentova, Lubov, Utevska, Olga, Ricaut, François-Xavier, Brucato, Nicolas, Sudoyo, Herawati, Letellier, Thierry, Cox, Murray P, Barashkov, Nikolay A, Skaro, Vedrana, Mulahasanovic, Lejla, Primorac, Dragan, Sahakyan, Hovhannes, Mormina, Maru, Eichstaedt, Christina A, Lichman, Daria V, Abdullah, Syafiq, Chaubey, Gyaneshwer, Wee, Joseph TS, Mihailov, Evelin, Karunas, Alexandra, Litvinov, Sergei, Khusainova, Rita, Ekomasova, Natalya, Akhmetova, Vita, Khidiyatova, Irina, Marjanović, Damir, Yepiskoposyan, Levon, Behar, Doron M, Balanovska, Elena, Metspalu, Andres, Derenko, Miroslava, Malyarchuk, Boris, Voevoda, Mikhail, Fedorova, Sardana A, Osipova, Ludmila P, Lahr, Marta Mirazón, Gerbault, Pascale, Leavesley, Matthew, Migliano, Andrea Bamberg, Petraglia, Michael, Balanovsky, Oleg, Khusnutdinova, Elza K, Metspalu, Ene, Thomas, Mark G, Manica, Andrea, Nielsen, Rasmus, Villems, Richard, Willerslev, Eske, Kivisild, Toomas, and Metspalu, Mait

Subjects
Estonia, Gene Flow, Heterozygote, New Guinea, Asia, Continental Population Groups, Fossils, Genome, Human, Human Migration, Population Dynamics, Datasets as Topic, Genomics, 3. Good health, Europe, Oceanic Ancestry Group, Genetics, Population, Africa, Animals, Humans, History, Ancient, Neanderthals
Abstract

High-coverage whole-genome sequence studies have so far focused on a limited number of geographically restricted populations, or been targeted at specific diseases, such as cancer. Nevertheless, the availability of high-resolution genomic data has led to the development of new methodologies for inferring population history and refuelled the debate on the mutation rate in humans. Here we present the Estonian Biocentre Human Genome Diversity Panel (EGDP), a dataset of 483 high-coverage human genomes from 148 populations worldwide, including 379 new genomes from 125 populations, which we group into diversity and selection sets. We analyse this dataset to refine estimates of continent-wide patterns of heterozygosity, long- and short-distance gene flow, archaic admixture, and changes in effective population size through time as well as for signals of positive or balancing selection. We find a genetic signature in present-day Papuans that suggests that at least 2% of their genome originates from an early and largely extinct expansion of anatomically modern humans (AMHs) out of Africa. Together with evidence from the western Asian fossil record, and admixture between AMHs and Neanderthals predating the main Eurasian expansion, our results contribute to the mounting evidence for the presence of AMHs out of Africa earlier than 75,000 years ago., Support was provided by: Estonian Research Infrastructure Roadmap grant no 3.2.0304.11-0312; Australian Research Council Discovery grants (DP110102635 and DP140101405) (D.M.L., M.W. and E.W.); Danish National Research Foundation; the Lundbeck Foundation and KU2016 (E.W.); ERC Starting Investigator grant (FP7 - 261213) (T.K.); Estonian Research Council grant PUT766 (G.C. and M.K.); EU European Regional Development Fund through the Centre of Excellence in Genomics to Estonian Biocentre (R.V.; M.Me. and A.Me.), and Centre of Excellence for Genomics and Translational Medicine Project No. 2014-2020.4.01.15-0012 to EGC of UT (A.Me.) and EBC (M.Me.); Estonian Institutional Research grant IUT24-1 (L.S., M.J., A.K., B.Y., K.T., C.B.M., Le.S., H.Sa., S.L., D.M.B., E.M., R.V., G.H., M.K., G.C., T.K. and M.Me.) and IUT20-60 (A.Me.); French Ministry of Foreign and European Affairs and French ANR grant number ANR-14-CE31-0013-01 (F.-X.R.); Gates Cambridge Trust Funding (E.J.); ICG SB RAS (No. VI.58.1.1) (D.V.L.); Leverhulme Programme grant no. RP2011-R-045 (A.B.M., P.G. and M.G.T.); Ministry of Education and Science of Russia; Project 6.656.2014/K (S.A.F.); NEFREX grant funded by the European Union (People Marie Curie Actions; International Research Staff Exchange Scheme; call FP7-PEOPLE-2012-IRSES-number 318979) (M.Me., G.H. and M.K.); NIH grants 5DP1ES022577 05, 1R01DK104339-01, and 1R01GM113657-01 (S.Tis.); Russian Foundation for Basic Research (grant N 14-06-00180a) (M.G.); Russian Foundation for Basic Research; grant 16-04-00890 (O.B. and E.B); Russian Science Foundation grant 14-14-00827 (O.B.); The Russian Foundation for Basic Research (14-04-00725-a), The Russian Humanitarian Scientific Foundation (13-11-02014) and the Program of the Basic Research of the RAS Presidium “Biological diversity” (E.K.K.); Wellcome Trust and Royal Society grant WT104125AIA & the Bristol Advanced Computing Research Centre (http://www.bris.ac.uk/acrc/) (D.J.L.); Wellcome Trust grant 098051 (Q.A.; C.T.-S. and Y.X.); Wellcome Trust Senior Research Fellowship grant 100719/Z/12/Z (M.G.T.); Young Explorers Grant from the National Geographic Society (8900-11) (C.A.E.); ERC Consolidator Grant 647787 ‘LocalAdaptatio’ (A.Ma.); Program of the RAS Presidium “Basic research for the development of the Russian Arctic” (B.M.); Russian Foundation for Basic Research grant 16-06-00303 (E.B.); a Rutherford Fellowship (RDF-10-MAU-001) from the Royal Society of New Zealand (M.P.C.).

22. Ancient human genomes suggest three ancestral populations for present-day Europeans

Author

Economou, Christos, Lipson, Mark, Berrada, Fouad, Hervig, Tor, Bedoya, Gabriel, Dryomov, Stanislav, Kittles, Rick, Mallick, Swapan, Yeppiskoposyan, Levon, Uktveryte, Ingrida, Corach, Daniel, Osipova, Ludmila, Bene, Judit, Bollongino, Ruth, Balanovska, Elena, Cali, Francesco, Sahakyan, Hovhannes, Busby, George B.J., Balanovsky, Oleg, Bailliet, Graciela, Jha, Aashish R., Van Driem, George, Dugoujon, Jean-Michael, Thomas, Mark G., Capelli, Cristian, Wahl, Joachim, Voevoda, Mikhail, Salas, Antonio, Khusnutdinova, Elza, Villems, Richard, Castellano, Sergi, Kivisild, Toomas, Pääbo, Svente, Ruizbakiev, Ruslan, Patterson, Nick, Fu, Qiaomei, Krause, Johannes, Ben-Ami, Haim, Fonander, Elin, Kirsanow, Karola, Renaud, Gabriel, Turdikulova, Shahlo, Damba, Larissa, Tarekegn, Ayele, Romero, Irene Gallego, Cooper, Alan, Klitz, William, Burger, Joachim, Berger, Bonnie, Filippo, Cesare De, Comas, David, Khusainova, Rita, Bravi, Chaudia M., Litvinov, Sergei, Zalloua, Pierre, Starikovskaya, Elena B., Henn, Brenna, Prüfer, Kay, Platanov, Fedor, Meyer, Matthias, Tishkoff, Sarah A., Delsate, Dominique, Toncheva, Draga, Haak, Wolfgang, Singh, Lalji, Kelso, Janet, Vazquez, Rene, Hammer, Michael, Villena, Mercedes, Brisighelli, Francesca, Gubina, Marina, Kucinskas, Vaidutis, Rohland, Nadin, Slatkin, Montgomery, Näkkäläjärvi, Klemetti, Li, Heng, Barrantes, Ramiro, Laredj, Leila, Kushniarevich, Alena, Winkler, Cheryl, Rudan, Igor, Guinet, Jean-Michel, Eichler, Evan E., Molina, Julio, Francken, Michael, Ayodo, George, Rothhammer, Francisco, Romano, Valentino, Metspalu, Ene, Hallgren, Fredrik, Lazaridis, Iosif, Mahley, Robert W., Thangaraj, Kumarasamy, Sukernik, Rem, Babiker, Hamza A., Karachanak-Yankova, Sena, Schraiber, Joshua G., Fedorova, Sardana A., Metspalu, Mait, Ruiz-Linares, Andres, Nyambo, Thomas, Mittnik, Alissa, Reich, David, Mountain, Joanna, Sudmant, Peter H., Zemunik, Tatijana, Posth, Cosimo, Loukidis, Theologos, Cole, David E.C., Nesheva, Desislava, Nordenfelt, Susanne, Posukh, Olga, Churnosov, Michail, Bos, Kirsten I., Hodoglugil, Ugur, Sajantila, Antti, Parik, Jüri, Melegh, Bela, Sawyer, Susanne, and Utevska, Olga

Subjects
410 Linguistics, 3. Good health

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