1. Liver and whole blood transcriptome response to chronic heat exposure in laying hens
- Author
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Frédéric Jehl, Andrea Rau, Colette Désert, Morgane Boutin, Kévin Muret, Sophie Leroux, Diane Esquerre, Christophe Klopp, David Gourichon, Frédérique Pitel, Anne Collin, Sandrine Lagarrigue, Tatiana Zerjal, Génétique Animale et Biologie Intégrative (GABI), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Physiologie, Environnement et Génétique pour l'Animal et les Systèmes d'Elevage [Rennes] (PEGASE), AGROCAMPUS OUEST-Institut National de la Recherche Agronomique (INRA), Génétique Physiologie et Systèmes d'Elevage (GenPhySE ), École nationale supérieure agronomique de Toulouse [ENSAT]-Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, Institut National de la Recherche Agronomique (INRA), Pôle d'Expérimentation Avicole de Tours (PEAT), Unité de Recherches Avicoles, AgroParisTech-Institut National de la Recherche Agronomique (INRA), Université Paris-Saclay, Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Vétérinaire de Toulouse (ENVT), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-École nationale supérieure agronomique de Toulouse [ENSAT], Dynamiques Forestières dans l'Espace Rural (DYNAFOR), Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Supérieure Agronomique de Toulouse-Institut National Polytechnique (Toulouse) (Toulouse INP), Unité de Mathématiques et Informatique Appliquées de Toulouse (MIAT INRA), Recherches Avicoles (SRA), Institut National de la Recherche Agronomique (INRA)-AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Institut National de la Recherche Agronomique (INRA)-École nationale supérieure agronomique de Toulouse [ENSAT]-Institut National Polytechnique (Toulouse) (Toulouse INP), Pôle d'Expérimentation Avicole de Tours (UE PEAT), and Unité de Recherches Avicoles (URA)
- Subjects
Animal biology ,Heat exposure ,Blood ,Liver ,health care facilities, manpower, and services ,[SDV]Life Sciences [q-bio] ,Biologie animale ,education ,[SDV.SA.AGRO]Life Sciences [q-bio]/Agricultural sciences/Agronomy ,RNA-seq ,Laying hens ,health care economics and organizations - Abstract
International audience; Adaptation to heat exposure is required to maintain animal welfare and productivity under high ambient temperature (AT) conditions. In this study we investigate the effects of chronic heat exposure (5 weeks at a constant temperature of 32°C) on the liver and whole blood transcriptome of brown egg layers from 2 divergent lines selected for low (R-) and high (R+) residual feed intake. The R+ and R- hens were equally distributed among 2 temperature-controlled chambers and reared under thermo-neutrality (22°C). At 28 wk of age the AT of one chamber was increased to 32°C until 33 wk of age, when 32 animals (8 per line and treatment) were slaughtered. Total RNA was obtained from the liver and blood and was sequenced using the Illumina HiSEqn 3000, yielding an average per sample of 90 million paired-end reads. The reads were mapped to the Gallus gallus-5 reference genome by STAR software and counted by RSEM software using the Ensembl V87 GTF annotation. Comparisons between the two AT groups were made using the edgeR-robust R/Bioconductor package. Patterns of AT-specific differential expression were largely shared by the two lines, and no evidence of temperature × line interactions were observed. In liver, a total of 229 differentially expressed genes (DEG) were identified (adjusted P-values < 0.05) with respectively 104 and 125 over and under expressed in the heat-exposed compared to the control group. In blood, 960 DEG were identified between the two AT groups with 479 and 481 over and under expressed. Most DEG were tissue specific, and only 18 genes were DE in both liver and blood. Ingenuity Pathway Analysis revealed that many of the DEG in liver were associated with amino acid and lipid metabolisms and energy production. Key genes involved in fatty acid β-oxidation, ketogenesis, cholesterol biosynthesis were under-expressed in the heat-exposed animals. In blood, many of the DEG were associated with cell related functions. Based on the DEG expression profile, down-regulation was observed for the PI3K/AKT, the VEGF and the PDGF signalling pathways involved in cell survival and growth, vasculogenesis and angiogenesis. Taken together, these results indicate a tissue-specific response to heat exposure.
- Published
- 2017