12 results on '"Tracey Rayner"'
Search Results
2. Eliminating anti-nutritional plant food proteins: the case of seed protease inhibitors in pea.
- Author
-
Alfonso Clemente, Maria C Arques, Marion Dalmais, Christine Le Signor, Catherine Chinoy, Raquel Olias, Tracey Rayner, Peter G Isaac, David M Lawson, Abdelhafid Bendahmane, and Claire Domoney
- Subjects
Medicine ,Science - Abstract
Several classes of seed proteins limit the utilisation of plant proteins in human and farm animal diets, while plant foods have much to offer to the sustainable intensification of food/feed production and to human health. Reduction or removal of these proteins could greatly enhance seed protein quality and various strategies have been used to try to achieve this with limited success. We investigated whether seed protease inhibitor mutations could be exploited to enhance seed quality, availing of induced mutant and natural Pisum germplasm collections to identify mutants, whilst acquiring an understanding of the impact of mutations on activity. A mutant (TILLING) resource developed in Pisum sativum L. (pea) and a large germplasm collection representing Pisum diversity were investigated as sources of mutations that reduce or abolish the activity of the major protease inhibitor (Bowman-Birk) class of seed protein. Of three missense mutations, predicted to affect activity of the mature trypsin / chymotrypsin inhibitor TI1 protein, a C77Y substitution in the mature mutant inhibitor abolished inhibitor activity, consistent with an absolute requirement for the disulphide bond C77-C92 for function in the native inhibitor. Two further classes of mutation (S85F, E109K) resulted in less dramatic changes to isoform or overall inhibitory activity. The alternative strategy to reduce anti-nutrients, by targeted screening of Pisum germplasm, successfully identified a single accession (Pisum elatius) as a double null mutant for the two closely linked genes encoding the TI1 and TI2 seed protease inhibitors. The P. elatius mutant has extremely low seed protease inhibitory activity and introgression of the mutation into cultivated germplasm has been achieved. The study provides new insights into structure-function relationships for protease inhibitors which impact on pea seed quality. The induced and natural germplasm variants identified provide immediate potential for either halving or abolishing the corresponding inhibitory activity, along with associated molecular markers for breeding programmes. The potential for making large changes to plant protein profiles for improved and sustainable food production through diversity is illustrated. The strategy employed here to reduce anti-nutritional proteins in seeds may be extended to allergens and other seed proteins with negative nutritional effects. Additionally, the novel variants described for pea will assist future studies of the biological role and health-related properties of so-called anti-nutrients.
- Published
- 2015
- Full Text
- View/download PDF
3. Genetic Variation Controlling Wrinkled Seed Phenotypes in Pisum: How Lucky Was Mendel?
- Author
-
Tracey Rayner, Carol Moreau, Mike Ambrose, Peter G. Isaac, Noel Ellis, and Claire Domoney
- Subjects
genetic markers ,myoinositol ,pea germplasm ,r and rb mutations ,seed phenotype ,seed coat (testa) metabolites ,wrinkled seeds ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
One of the traits studied by Mendel in pea (Pisum sativum L.) was the wrinkled-seeded phenotype, and the molecular basis for a mutation underlying this phenotype was discovered in the 1990s. Although the starch-branching enzyme gene mutation identified at the genetic locus r is most likely to be that in seeds available to Mendel in the mid-1800s, it has remained an open question as to whether or not additional natural mutations in this gene exist within Pisum germplasm collections. Here, we explore this question and show that all but two wrinkled-seeded variants in one such collection correspond to either the mutant allele described previously for the r locus or a mutation at a second genetic locus, rb, affecting the gene encoding the large subunit of Adenosine diphosphoglucose (ADP-glucose) pyrophosphorylase; the molecular basis for the rb mutation is described here. The genetic basis for the phenotype of one (JI 2110) of the two lines which are neither r nor rb has been studied in crosses with a round-seeded variant (JI 281); for which extensive genetic marker data were expected. In marked contrast to the trait studied by Mendel and the rb phenotype; the data suggest that the wrinkled-seeded phenotype in JI 2110 is maternally determined, controlled by two genetic loci, and the extent to which it is manifested is very sensitive to the environment. Metabolite analysis of the cotyledons of JI 2110 revealed a profile for sucrose and sucrose-derived compounds that was more similar to that of wild-type round-seeded, than that of wrinkled-seeded r, pea lines. However, the metabolite profile of the seed coat (testa) of JI 2110 was distinct from that of other round-seeded genotypes tested which, together with analysis of recombinant inbred progeny lines, suggests an explanation for the seed phenotype.
- Published
- 2017
- Full Text
- View/download PDF
4. Combination of three null mutations affecting seed protein accumulation in pea (Pisum sativum L.) impacts positively on digestibility
- Author
-
Raquel Olías, Tracey Rayner, Alfonso Clemente, and Claire Domoney
- Subjects
Food Science - Published
- 2023
5. Recombinant inbred lines derived from cultivars of pea for understanding the genetic basis of variation in breeders' traits
- Author
-
Claire Domoney, Jane Thomas, Steve Belcher, Haidee Philpott, Keith Fox, Tracey Rayner, Noel Ellis, Lynda Turner, Carol Moreau, and M. R. Knox
- Subjects
0106 biological sciences ,0301 basic medicine ,Germplasm ,Genetics ,Candidate gene ,Locus (genetics) ,Plant Science ,Quantitative trait locus ,Biology ,01 natural sciences ,03 medical and health sciences ,030104 developmental biology ,Inbred strain ,Genotype ,Cultivar ,Agronomy and Crop Science ,Legume ,010606 plant biology & botany - Abstract
In order to gain an understanding of the genetic basis of traits of interest to breeders, the pea varieties Brutus, Enigma and Kahuna were selected, based on measures of their phenotypic and genotypic differences, for the construction of recombinant inbred populations. Reciprocal crosses were carried out for each of the three pairs, and over 200 F2 seeds from each cross advanced to F13. Bulked F7 seeds were used to generate F8–F11 bulks, which were grown in triplicated plots within randomized field trials and used to collect phenotypic data, including seed weight and yield traits, over a number of growing seasons. Genetic maps were constructed from the F6 generation to support the analysis of qualitative and quantitative traits and have led to the identification of four major genetic loci involved in seed weight determination and at least one major locus responsible for variation in yield. Three of the seed weight loci, at least one of which has not been described previously, were associated with the marrowfat seed phenotype. For some of the loci identified, candidate genes have been identified. The F13 single seed descent lines are available as a germplasm resource for the legume and pulse crop communities.
- Published
- 2018
6. Speed breeding is a powerful tool to accelerate crop research and breeding
- Author
-
Matthew J. Williams, Graham Moore, Claire Domoney, Robert F. Park, Laura E. Dixon, Jacqueline Batley, M. Asyraf Md Hatta, Daniel Reynolds, Mark J. Dieters, Merrill Ryan, Lee T. Hickey, Wendy Harwood, James Simmonds, Ji Zhou, Amy Watson, Brande B. H. Wulff, Jeremy Carter, Nikolai M. Adamski, Andy Breakspear, Paul Nicholson, David Edwards, A. Steed, Sreya Ghosh, William Martin, Cristobal Uauy, Adnan Riaz, William S. Cuddy, Harsh Raman, Tracey Rayner, Andrey V. Korolev, Christian Rogers, Ian H. DeLacy, Scott A. Boden, María-Dolores Rey, and Alison Hinchliffe
- Subjects
0106 biological sciences ,0301 basic medicine ,Crops, Agricultural ,food.ingredient ,Time Factors ,Population ,Plant Science ,Biology ,01 natural sciences ,Crop ,03 medical and health sciences ,Sativum ,food ,Plant breeding ,Canola ,education ,Triticum ,2. Zero hunger ,education.field_of_study ,Food security ,business.industry ,Research ,Brassica napus ,Peas ,Hordeum ,Cicer ,Plant Breeding ,030104 developmental biology ,Phenotype ,Agronomy ,Agriculture ,Hordeum vulgare ,business ,010606 plant biology & botany - Abstract
The growing human population and a changing environment have raised significant concern for global food security, with the current improvement rate of several important crops inadequate to meet future demand1. This slow improvement rate is attributed partly to the long generation times of crop plants. Here, we present a method called ‘speed breeding’, which greatly shortens generation time and accelerates breeding and research programmes. Speed breeding can be used to achieve up to 6 generations per year for spring wheat (Triticum aestivum), durum wheat (T. durum), barley (Hordeum vulgare), chickpea (Cicer arietinum) and pea (Pisum sativum), and 4 generations for canola (Brassica napus), instead of 2–3 under normal glasshouse conditions. We demonstrate that speed breeding in fully enclosed, controlled-environment growth chambers can accelerate plant development for research purposes, including phenotyping of adult plant traits, mutant studies and transformation. The use of supplemental lighting in a glasshouse environment allows rapid generation cycling through single seed descent (SSD) and potential for adaptation to larger-scale crop improvement programs. Cost saving through light-emitting diode (LED) supplemental lighting is also outlined. We envisage great potential for integrating speed breeding with other modern crop breeding technologies, including high-throughput genotyping, genome editing and genomic selection, accelerating the rate of crop improvement.
- Published
- 2018
7. Speed breeding: a powerful tool to accelerate crop research and breeding
- Author
-
Graham Moore, Nikolai M. Adamski, Alison Hinchliffe, Tracey Rayner, William Martin, William S. Cuddy, A. Steed, Wendy Harwood, Andy Breakspear, David Edwards, Matthew J. Williams, Sreya Ghosh, Adnan Riaz, Claire Domoney, María-Dolores Rey, Scott A. Boden, Merrill Ryan, Robert F. Park, M. Asyraf Md Hatta, Mark J. Dieters, Brande B. H. Wulff, Ji Zhou, Jacqueline Batley, Ian H. DeLacy, Paul Nicholson, James Simmonds, Harsh Raman, Lee T. Hickey, Cristobal Uauy, Daniel Reynolds, Amy Watson, Andrey V. Korolev, Christian Rogers, and Laura E. Dixon
- Subjects
0106 biological sciences ,2. Zero hunger ,0303 health sciences ,education.field_of_study ,Generation time ,food.ingredient ,Food security ,Population ,Greenhouse ,Biology ,01 natural sciences ,Crop ,03 medical and health sciences ,food ,Sativum ,Agronomy ,Hordeum vulgare ,Canola ,education ,030304 developmental biology ,010606 plant biology & botany - Abstract
The growing human population and a changing environment have raised significant concern for global food security, with the current improvement rate of several important crops inadequate to meet future demand [1]. This slow improvement rate is attributed partly to the long generation times of crop plants. Here we present a method called ‘speed breeding’, which greatly shortens generation time and accelerates breeding and research programs. Speed breeding can be used to achieve up to 6 generations per year for spring wheat (Triticum aestivum), durum wheat (T. durum), barley (Hordeum vulgare), chickpea (Cicer arietinum), and pea (Pisum sativum) and 4 generations for canola (Brassica napus), instead of 2-3 under normal glasshouse conditions. We demonstrate that speed breeding in fully-enclosed controlled-environment growth chambers can accelerate plant development for research purposes, including phenotyping of adult plant traits, mutant studies, and transformation. The use of supplemental lighting in a glasshouse environment allows rapid generation cycling through single seed descent and potential for adaptation to larger-scale crop improvement programs. Cost-saving through LED supplemental lighting is also outlined. We envisage great potential for integrating speed breeding with other modern crop breeding technologies, including high-throughput genotyping, genome editing, and genomic selection, accelerating the rate of crop improvement.
- Published
- 2017
8. Genetic Variation Controlling Wrinkled Seed Phenotypes in Pisum: How Lucky Was Mendel?
- Author
-
Mike Ambrose, Claire Domoney, Peter Isaac, Tracey Rayner, Noel Ellis, and Carol Moreau
- Subjects
0106 biological sciences ,0301 basic medicine ,Germplasm ,Glucose-1-Phosphate Adenylyltransferase ,01 natural sciences ,lcsh:Chemistry ,Genotype ,myoinositol ,lcsh:QH301-705.5 ,Spectroscopy ,seed coat (testa) metabolites ,Plant Proteins ,2. Zero hunger ,Genetics ,biology ,food and beverages ,General Medicine ,Phenotype ,Computer Science Applications ,Seeds ,seed phenotype ,Locus (genetics) ,pea germplasm ,Genes, Plant ,Catalysis ,Article ,Pisum ,Inorganic Chemistry ,wrinkled seeds ,03 medical and health sciences ,genetic markers ,r and rb mutations ,Genetic variation ,Physical and Theoretical Chemistry ,Molecular Biology ,Gene ,Alleles ,Organic Chemistry ,Peas ,Genetic Variation ,biology.organism_classification ,030104 developmental biology ,lcsh:Biology (General) ,lcsh:QD1-999 ,Genetic marker ,Genetic Loci ,Mutation ,010606 plant biology & botany - Abstract
One of the traits studied by Mendel in pea (Pisum sativum L.) was the wrinkled-seeded phenotype, and the molecular basis for a mutation underlying this phenotype was discovered in the 1990s. Although the starch-branching enzyme gene mutation identified at the genetic locus r is most likely to be that in seeds available to Mendel in the mid-1800s, it has remained an open question as to whether or not additional natural mutations in this gene exist within Pisum germplasm collections. Here, we explore this question and show that all but two wrinkled-seeded variants in one such collection correspond to either the mutant allele described previously for the r locus or a mutation at a second genetic locus, rb, affecting the gene encoding the large subunit of Adenosine diphosphoglucose (ADP-glucose) pyrophosphorylase; the molecular basis for the rb mutation is described here. The genetic basis for the phenotype of one (JI 2110) of the two lines which are neither r nor rb has been studied in crosses with a round-seeded variant (JI 281); for which extensive genetic marker data were expected. In marked contrast to the trait studied by Mendel and the rb phenotype; the data suggest that the wrinkled-seeded phenotype in JI 2110 is maternally determined, controlled by two genetic loci, and the extent to which it is manifested is very sensitive to the environment. Metabolite analysis of the cotyledons of JI 2110 revealed a profile for sucrose and sucrose-derived compounds that was more similar to that of wild-type round-seeded, than that of wrinkled-seeded r, pea lines. However, the metabolite profile of the seed coat (testa) of JI 2110 was distinct from that of other round-seeded genotypes tested which, together with analysis of recombinant inbred progeny lines, suggests an explanation for the seed phenotype.
- Published
- 2017
9. Starting out - I lackedconfidencetospeakup formypatient'sbestinterests
- Author
-
Tracey, Rayner
- Abstract
On the first day in my new hospital placement I received a handover and was instructed to work with a healthcare assistant. I was shown to a patient's room by the care assistant and asked to undress and wash an older female patient.
- Published
- 2017
10. Correction: Eliminating Anti-Nutritional Plant Food Proteins: The Case of Seed Protease Inhibitors in Pea
- Author
-
Abdelhafid Bendahmane, Tracey Rayner, Maria del Carmen Arques, Catherine Chinoy, Raquel Olías, David M. Lawson, Christine Le Signor, Marion Dalmais, Alfonso Clemente, Peter Isaac, and Claire Domoney
- Subjects
medicine.medical_treatment ,lcsh:Medicine ,Biology ,Plant foods ,Bioinformatics ,medicine ,Animals ,Chymotrypsin ,Humans ,Protease Inhibitors ,Trypsin ,Food science ,Amino Acid Sequence ,lcsh:Science ,Plant Proteins ,Multidisciplinary ,Protease ,lcsh:R ,Peas ,Correction ,Diet ,Mutation ,Seeds ,lcsh:Q ,Anti nutritional ,Trypsin Inhibitors - Abstract
Several classes of seed proteins limit the utilisation of plant proteins in human and farm animal diets, while plant foods have much to offer to the sustainable intensification of food/feed production and to human health. Reduction or removal of these proteins could greatly enhance seed protein quality and various strategies have been used to try to achieve this with limited success. We investigated whether seed protease inhibitor mutations could be exploited to enhance seed quality, availing of induced mutant and natural Pisum germplasm collections to identify mutants, whilst acquiring an understanding of the impact of mutations on activity. A mutant (TILLING) resource developed in Pisum sativum L. (pea) and a large germplasm collection representing Pisum diversity were investigated as sources of mutations that reduce or abolish the activity of the major protease inhibitor (Bowman-Birk) class of seed protein. Of three missense mutations, predicted to affect activity of the mature trypsin / chymotrypsin inhibitor TI1 protein, a C77Y substitution in the mature mutant inhibitor abolished inhibitor activity, consistent with an absolute requirement for the disulphide bond C77-C92 for function in the native inhibitor. Two further classes of mutation (S85F, E109K) resulted in less dramatic changes to isoform or overall inhibitory activity. The alternative strategy to reduce anti-nutrients, by targeted screening of Pisum germplasm, successfully identified a single accession (Pisum elatius) as a double null mutant for the two closely linked genes encoding the TI1 and TI2 seed protease inhibitors. The P. elatius mutant has extremely low seed protease inhibitory activity and introgression of the mutation into cultivated germplasm has been achieved. The study provides new insights into structure-function relationships for protease inhibitors which impact on pea seed quality. The induced and natural germplasm variants identified provide immediate potential for either halving or abolishing the corresponding inhibitory activity, along with associated molecular markers for breeding programmes. The potential for making large changes to plant protein profiles for improved and sustainable food production through diversity is illustrated. The strategy employed here to reduce anti-nutritional proteins in seeds may be extended to allergens and other seed proteins with negative nutritional effects. Additionally, the novel variants described for pea will assist future studies of the biological role and health-related properties of so-called anti-nutrients.
- Published
- 2015
11. Eliminating anti-nutritional plant food proteins: the case of seed protease inhibitors in pea
- Author
-
Peter Isaac, Catherine Chinoy, Alfonso Clemente, Christine Le Signor, Raquel Olías, Marion Dalmais, Tracey Rayner, Maria del Carmen Arques, Claire Domoney, David M. Lawson, Abdelhafid Bendahmane, Department of Physiology and Biochemistry of Animal Nutrition, Estacion Experimental del Zaidin, Institut des Sciences des Plantes de Paris-Saclay (IPS2 (UMR_9213 / UMR_1403)), Institut National de la Recherche Agronomique (INRA)-Université Paris-Sud - Paris 11 (UP11)-Université Paris Diderot - Paris 7 (UPD7)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), Unité de recherche en génomique végétale (URGV), Institut National de la Recherche Agronomique (INRA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), Agroécologie [Dijon], Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Department of Metabolic Biology, John Innes Centre [Norwich], Biotechnology and Biological Sciences Research Council (BBSRC)-Biotechnology and Biological Sciences Research Council (BBSRC), IDna Genetics Ltd, Partenaires INRAE, Department of Biological Chemistry, Weizmann Institute of Science [Rehovot, Israël], European Regional Development Fund/The Ministry of Economy and Competitiveness [AGL2011-26353], EU COST Action FA1005 INFOGEST on Food Digestion, Biotechnology and Biological Sciences Research Council [BB/J004561/1], Department for Environment and Rural Affairs [AR0711, IF0147], Saclay Plant Sciences [ANR-10-LABX-40], Institut National de la Recherche Agronomique, Centre National de la Recherche Scientifique PeaMUST [ANR-11-BTBR-0002], Dna Genetics Ltd, and Domoney, Claire
- Subjects
0106 biological sciences ,TILLING ,Germplasm ,medicine.medical_treatment ,[SDV]Life Sciences [q-bio] ,Mutant ,lcsh:Medicine ,medicine.disease_cause ,01 natural sciences ,Pisum ,03 medical and health sciences ,medicine ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,lcsh:Science ,030304 developmental biology ,2. Zero hunger ,0303 health sciences ,Mutation ,Multidisciplinary ,Protease ,biology ,lcsh:R ,food and beverages ,biology.organism_classification ,Protease inhibitor (biology) ,Biochemistry ,Plant protein ,[SDE]Environmental Sciences ,lcsh:Q ,Research Article ,010606 plant biology & botany ,medicine.drug - Abstract
International audience; Several classes of seed proteins limit the utilisation of plant proteins in human and farm animal diets, while plant foods have much to offer to the sustainable intensification of food/feed production and to human health. Reduction or removal of these proteins could greatly enhance seed protein quality and various strategies have been used to try to achieve this with limited success. We investigated whether seed protease inhibitor mutations could be exploited to enhance seed quality, availing of induced mutant and natural Pisum germplasm collections to identify mutants, whilst acquiring an understanding of the impact of mutations on activity. A mutant (TILLING) resource developed in Pisum sativum L. (pea) and a large germplasm collection representing Pisum diversity were investigated as sources of mutations that reduce or abolish the activity of the major protease inhibitor (Bowman-Birk) class of seed protein. Of three missense mutations, predicted to affect activity of the mature trypsin / chymotrypsin inhibitor TI1 protein, a C77Y substitution in the mature mutant inhibitor abolished inhibitor activity, consistent with an absolute requirement for the disulphide bond C77-C92 for function in the native inhibitor. Two further classes of mutation (S85F, E109K) resulted in less dramatic changes to isoform or overall inhibitory activity. The alternative strategy to reduce anti-nutrients, by targeted screening of Pisum germplasm, successfully identified a single accession (Pisum elatius) as a double null mutant for the two closely linked genes encoding the TI1 and TI2 seed protease inhibitors. The P. elatius mutant has extremely low seed protease inhibitory activity and introgression of the mutation into cultivated germplasm has been achieved. The study provides new insights into structure-function relationships for protease inhibitors which impact on pea seed quality. The induced and natural germplasm variants identified provide immediate potential for either halving or abolishing the corresponding inhibitory activity, along with associated molecular markers for breeding programmes. The potential for making large changes to plant protein profiles for improved and sustainable food production through diversity is illustrated. The strategy employed here to reduce anti-nutritional proteins in seeds may be extended to allergens and other seed proteins with negative nutritional effects. Additionally, the novel variants described for pea will assist future studies of the biological role and health-related properties of so-called anti-nutrients.
- Published
- 2015
12. Starting out - I lackedconfidencetospeakup formypatient’sbestinterests
- Author
-
Tracey Rayner
- Subjects
Nursing ,Work (electrical) ,business.industry ,Female patient ,Health care ,Care assistants ,MEDLINE ,Medicine ,General Medicine ,business - Abstract
On the first day in my new hospital placement I received a handover and was instructed to work with a healthcare assistant. I was shown to a patient's room by the care assistant and asked to undress and wash an older female patient.
- Published
- 2007
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