40 results on '"Tarun JA"'
Search Results
2. Integrative medicine utilization among infertility patients
- Author
-
Shruti Sehgal, Ashley Dyer, Christopher Warren, Isabel Galic, and Tarun Jain
- Subjects
Infertility ,Complementary medicine ,Alternative medicine ,IVF ,Acupuncture ,Yoga ,Gynecology and obstetrics ,RG1-991 ,Reproduction ,QH471-489 - Abstract
Abstract Background Previous research suggests that some women are using integrative and complementary holistic approaches to optimize their own health and treat infertility. We aimed to determine patterns of integrative medicine use among those seeking fertility optimization by 1) Characterizing patterns of integrative medicine use to increase fertility; 2) Identifying demographic predictors associated with such integrative medicine use; and 3) Exploring cultural and religious influences on use of integrative medicine. Methods Cross-sectional self-reported survey data were collected from 1460 patients presenting to an academic fertility center in Chicago, Illinois. Variables were described with univariate frequencies and proportions, unadjusted bivariate comparisons were made between patient-level factors and reported integrative modality use, and multivariable logistic regression evaluated the strength of covariate-adjusted predictors of reported integrative medicine utilization. Results 80.4% of respondents reported using at least one integrative medicine modality to treat infertility (Acupuncture: 38.5%, Yoga: 27.6%, Massage: 25.8%, Meditation: 16.7%, and Herbal supplements: 18.5%). Diet therapy was the most frequently utilized modality (74.0%) followed by body therapy (45.2%), traditional alternative medicine (42.0%), mind therapy (32.1%), and senses therapy (23.0%). Any integrative medicine modality use was 4.03 times more likely among Hindu respondents compared to participants that identified as not religious (95% CI 1.2–13.7, p
- Published
- 2023
- Full Text
- View/download PDF
3. Prevalence of anemia in children with cleft lip and palate in Karnataka: A cohort study
- Author
-
Chetana Kumar, Centina Rose John, Krishna Shama Rao, Rolson Sandeep Amanna, Tarun Jain, and K Krishna Lohitha
- Subjects
anemia ,cleft repair ,india ,prevalence ,Dentistry ,RK1-715 ,Surgery ,RD1-811 - Abstract
Introduction: The poor nutritional status and lower socioeconomic conditions among the Indian population have influenced the decisions on elective cleft lip surgeries. These factors may delay the treatment, as well as affect the overall development of the child. This study aims to identify the prevalence of microcytic hypochromic anemia in the Indian population to formulate the protocol in need for iron and nutritional supplementation in elective surgical planning of cleft lip and palate, thereby providing a comprehensive care in clefts. Methodology: A cohort study was designed comparing 100 children with nonsyndromic cleft lip or palate, who were undergoing surgical repair in our institution cleft deformity and without congenital anomalies under the age of 2 years. The blood parameters (hemoglobin [Hb], mean corpuscular volume, mean corpuscular Hb concentration [MCHC], MCHC, and red cell distribution width cell volume) for identifying the microcytic hypochromic anemia were assessed before the surgical repair and compared with the normal population. Descriptive analysis was performed to extract results. Results: The study population had a mean age of 10.56 ± 7.02 months (55 boys and 45 girls). We identified 61% of the population having anemia, with 2% having severe anemia (Hb
- Published
- 2023
- Full Text
- View/download PDF
4. Editorial: Flexibility in the genome and proteome: an adaptive toolkit for organisms
- Author
-
Tarun Jairaj Narwani, Gaurav Sharma, and Alexandre G. de Brevern
- Subjects
flexibility ,protein disorder ,retrogenesis ,evolution ,protein protein interaction (PPI) ,COVID-19 ,Genetics ,QH426-470 - Published
- 2023
- Full Text
- View/download PDF
5. Impact of in vitro fertilization state mandates for third party insurance coverage in the United States: a review and critical assessment
- Author
-
Benjamin J. Peipert, Melissa N. Montoya, Bronwyn S. Bedrick, David B. Seifer, and Tarun Jain
- Subjects
Infertility ,Assisted reproductive technology ,In vitro fertilization ,Insurance mandates ,Health policy ,Gynecology and obstetrics ,RG1-991 ,Reproduction ,QH471-489 - Abstract
Abstract The American Society for Reproductive Medicine estimates that fewer than a quarter of infertile couples have sufficient access to infertility care. Insurers in the United States (US) have long considered infertility to be a socially constructed condition, and thus in-vitro fertilization (IVF) an elective intervention. As a result, IVF is cost prohibitive for many patients in the US. State infertility insurance mandates are a crucial mechanism for expanding access to fertility care in the US in the absence of federal legislation. The first state insurance mandate for third party coverage of infertility services was passed by West Virginia in 1977, and Maryland passed the country’s first IVF mandate in 1985. To date, twenty states have passed legislation requiring insurers to cover or offer coverage for the diagnosis and treatment of infertility. Ten states currently have “comprehensive” IVF mandates, meaning they require third party coverage for IVF with minimal restrictions to patient eligibility, exemptions, and lifetime limits. Several studies analyzing the impact of infertility and IVF mandates have been published in the past 20 years. In this review, we characterize and contextualize the existing evidence of the impact of state insurance mandates on access to infertility treatment, IVF practice patterns, and reproductive outcomes. Furthermore, we summarize the arguments in favor of insurance coverage for infertility care and assess the limitations of state insurance mandates as a strategy for increasing access to infertility treatment. State mandates play a key role in the promotion of evidence-based practices and represent an essential and impactful strategy for the advancement of gender equality and reproductive rights.
- Published
- 2022
- Full Text
- View/download PDF
6. Global in vitro fertilization utilization: How does the United States compare?
- Author
-
Benjamin J. Peipert, M.D., Eli Y. Adashi, M.D., M.S., Alan Penzias, M.D., and Tarun Jain, M.D.
- Subjects
Diseases of the genitourinary system. Urology ,RC870-923 ,Gynecology and obstetrics ,RG1-991 - Published
- 2023
- Full Text
- View/download PDF
7. A review of disparities in access to infertility care and treatment outcomes among Hispanic women
- Author
-
Allison S. Komorowski and Tarun Jain
- Subjects
Health disparities ,Reproductive medicine ,Infertility care ,Access to care ,Hispanic ethnicity ,Gynecology and obstetrics ,RG1-991 ,Reproduction ,QH471-489 - Abstract
Abstract Hispanic women have lower rates of use of infertility services than non-Hispanic White women. There are many barriers that impede access to infertility care including economic, geographic, cultural, and societal factors and there are disparities in treatment outcomes. Hispanic women are less likely to seek infertility care than non-Hispanic White women and even after infertility evaluation, Hispanic women are less likely to receive treatment for their infertility. Lower use of infertility treatments among Hispanic women is unlikely to be driven solely by economic factors. There is disappointingly little data on in-vitro fertilization treatment outcomes including the population of Hispanic women, and existing data has yielded conflicting results. Incomplete and variable reporting of race data across clinics raises the potential for misclassification bias and invalid study conclusions. Addressing disparities in access to reproductive medicine in the Hispanic population will required a multifaceted approach including expanded insurance coverage, improved education for both patients and providers, and additional research on barriers to care.
- Published
- 2022
- Full Text
- View/download PDF
8. NOD: a web server to predict New use of Old Drugs to facilitate drug repurposing
- Author
-
Tarun Jairaj Narwani, Narayanaswamy Srinivasan, and Sohini Chakraborti
- Subjects
Medicine ,Science - Abstract
Abstract Computational methods accelerate the drug repurposing pipelines that are a quicker and cost-effective alternative to discovering new molecules. However, there is a paucity of web servers to conduct fast, focussed, and customized investigations for identifying new uses of old drugs. We present the NOD web server, which has the mentioned characteristics. NOD uses a sensitive sequence-guided approach to identify close and distant homologs of a protein of interest. NOD then exploits this evolutionary information to suggest potential compounds from the DrugBank database that can be repurposed against the input protein. NOD also allows expansion of the chemical space of the potential candidates through similarity searches. We have validated the performance of NOD against available experimental and/or clinical reports. In 65.6% of the investigated cases in a control study, NOD is able to identify drugs more effectively than the searches made in DrugBank. NOD is freely-available at http://pauling.mbu.iisc.ac.in/NOD/NOD/ .
- Published
- 2021
- Full Text
- View/download PDF
9. Characterization of polycystic ovary syndrome among Flo app users around the world
- Author
-
Tarun Jain, Olivia Negris, Dannielle Brown, Isabel Galic, Rodion Salimgaraev, and Liudmila Zhaunova
- Subjects
Polycystic ovary syndrome ,BMI ,Bloating ,Hirsutism ,Menstrual cycle tracking ,Gynecology and obstetrics ,RG1-991 ,Reproduction ,QH471-489 - Abstract
Abstract Background Polycystic ovary syndrome (PCOS) is a complex and multi-faceted endocrine disorder that affects 5–20% of women. Literature is limited regarding potentially differing PCOS phenotypes among women around the world. Objective To use Flo app technology to understand the multifaceted characteristics of PCOS across several countries and identify contributing risk factors to the development of this condition. Study design Flo is a widely used female health and wellbeing app with period tracking functionality that provides a globally representative and medically unbiased perspective on PCOS symptomatology. A chatbot dialog on PCOS was subsequently administered on the Flo application (app) to users from 142 countries (with at least 100 respondents) who have the app running in English during September–October 2019. Results For analyses, we selected the five countries with the greatest number of respondents: US (n = 243,238), UK (n = 68,325), India (n = 40,092), Philippines (n = 35,131), and Australia (n = 29,926). Bloating was the most frequently reported symptom among PCOS-positive women and appeared to be the main predictor of PCOS in our model (odds ratio 3·76 [95% CI 3·60–3·94]; p
- Published
- 2021
- Full Text
- View/download PDF
10. Disparities in access to fertility care: who’s in and who’s out
- Author
-
Isabel Galic, B.A., Olivia Negris, M.A., Christopher Warren, Ph.D., Dannielle Brown, M.H.S., Alexandria Bozen, B.A., and Tarun Jain, M.D.
- Subjects
Racial disparities ,access to care ,infertility ,IVF ,insurance coverage ,Diseases of the genitourinary system. Urology ,RC870-923 ,Gynecology and obstetrics ,RG1-991 - Abstract
Objective: To study the racial and socioeconomic characteristics of women seeking fertility care in a state with mandated insurance coverage for fertility testing and treatment. Design: Cross-sectional, self-administered survey. Setting: Academic fertility center in Illinois. Patient(s): Of 5,000 consecutive fertility care patients, 1,460 completed the survey and were included in the study sample. Intervention(s): None. Main Outcome Measure(s): Details about demographic characteristics and health care access on the basis of patient race/ethnicity and socioeconomic status. Result(s): The mean age of participants was 36.1 years; 75.5% were White, 10.2% Asian, 7.3% Black, 5.7% Latinx, and 1.3% Other. Most women had a bachelor’s (35.5%) or master’s degree (40.5%) and an annual household income of >$100,000 (81.5%). Black and Hispanic women traveled twice as far (median 10 miles) as White and Asian women (median 5 miles for both) for treatment. Black women (14.7%) were more likely to report that their race was a barrier to getting fertility treatment compared with White (0.0%), Hispanic (5.1%), and Asian (5.4%) women. Black and Hispanic women were approximately twice as likely to report income level (26.5% and 20.3%, respectively) and weight (7.8% and 8.9%, respectively) as barriers compared with White and Asian respondents. Conclusion(s): Significant racial and socioeconomic disparities exist among fertility patients accessing care. Beyond providing all Americans with health insurance that covers fertility treatment, further research in the general population is needed to understand the complex social, cultural, racial, and economic factors that prohibit many individuals from accessing needed fertility care.
- Published
- 2021
- Full Text
- View/download PDF
11. Laparoscopy training status in India and a review of the current resident skill standards
- Author
-
T Krishna Prasad, Rajeev Sood, Aneesh Srivastava, Venkatesh Krishnamoorthy, Manu Gupta, Jamal S Rizvi, Surya Praksah Vaddi, and Tarun Javali
- Subjects
curriculum ,laparoscopy ,standards ,training ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Context: The aim was to identify the current training standard of laparoscopy skills among the urology residents. Aims: This paper presents the residents' subjective perception of their laparoscopy skills and evidence of an objective assessment of their actual skills. Settings and Design: An online survey was mailed, and completed by urology residents in training. The residents' perception of laparoscopy training received, exposure to laparoscopy procedures, and training facilities were queried. The assessment was done on the skill levels of the residents presenting at an annual training program. Subjects and Methods: 103 residents responded to the online survey and 115 residents were assessed at the training program. Statistical Analysis Used: Discrete data were compared using the t-test to test for significance of the means; P < 0.05 was considered significant. Pearson's correlation coefficient was used to obtain the relationship between variables. Results: An overwhelming 91% rated their laparoscopy skill as just “satisfactory” or worse, and 60% did not have any training facilities in their department. 66% continue to be “assistants only” in conventional laparoscopy surgeries. Assessment of basic laparoscopy skills in the dry lab revealed 92% of residents having poor laparoscopy skills; similar to the subjective opinion in the survey. Only 6% (n = 5) of the residents showed a good or better skill score in the dry lab; similar to the survey. Conclusions: Based on the survey, a large number of residents have a poor opinion of their own laparoscopy skills, and the training facilities available to them. The data objectively prove the self-assessment of the residents on their laparoscopy skill level.
- Published
- 2021
- Full Text
- View/download PDF
12. Rotational Atherectomy Induced Coronary Perforation of Right Coronary Artery Draining into Middle Cardiac Vein
- Author
-
Amit Hooda, MD, Reza Masoomi, MD, Tarun Jain, MD, Gurpreet S. Johal, MD, Nitin Barman, MD, and Samin K. Sharma, MD
- Subjects
coronary perforation ,covered stent ,Ellis Type III cavity spilling ,middle cardiac vein ,rotational atherectomy ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Ellis Type III cavity spilling coronary perforation is a rare complication. We report to our knowledge, the first case of rotational atherectomy induced Type III cavity spilling coronary perforation of right posterior descending artery draining into middle cardiac vein, successfully managed by covered stent deployment. (Level of Difficulty: Advanced.)
- Published
- 2020
- Full Text
- View/download PDF
13. Clinical Characteristics and In-Hospital Mortality for COVID-19 Across The Globe
- Author
-
Sunny Goel, Tarun Jain, Amit Hooda, Rohit Malhotra, Gurpreet Johal, Reza Masoomi, Haroon Kamran, Parasuram Melarcode Krishnamoorthy, Nagendra Boopathy Senguttuvan, Abhishek Sharma, and Umesh Gidwani
- Subjects
Clinical characteristics ,COVID-19 ,In-hospital mortality ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Introduction Numerous case series have reported on the baseline characteristics and in-hospital mortality of patients with COVID-19, however, these studies included patients localized in a specific geographic region. The purpose of our study was to identify differences in the clinical characteristics and the in-hospital mortality of patients with a laboratory-confirmed diagnosis of COVID-19 internationally. Methods A comprehensive search of all published literature on adult patients with laboratory-confirmed diagnosis of COVID-19 that reported on the clinical characteristics and in-hospital mortality was performed. Groups were compared using a Chi-square test with Yates correction of continuity. A two-tailed p value of less than 0.05 was considered as statistically significant. Results After screening 516 studies across the globe, 43 studies from 12 countries were included in our final analysis. Patients with COVID-19 in America and Europe were older compared to their Asian counterparts. Europe had the highest percentage of male patients. American and European patients had a higher incidence of co-morbid conditions (p
- Published
- 2020
- Full Text
- View/download PDF
14. 181 Evaluating the Association of Age with Acuity and Severity of Illness at Initial Clinical Presentation in Patients with Leukemia and Lymphoma
- Author
-
Tarun Jain, Xu Ji, Nicholas DeGroote, Cortland Coxhead, Ann Mertens, and Sharon Castellino
- Subjects
Medicine - Abstract
OBJECTIVES/GOALS: Adolescent and young adult (AYA) patients, diagnosed with cancer between 15 and 39 years of age, often have worse outcomes compared to younger children and older adults. We will characterize age differences in acuity and severity of illness at initial presentation, as a measure for health outcomes, in patients with new diagnoses of leukemia or lymphoma. METHODS/STUDY POPULATION: We will perform a single institution-based, retrospective analysis of a cohort of pediatric oncology patients at Children’s Healthcare of Atlanta (CHOA) who were diagnosed with leukemia or lymphoma from 2010 to 2018. Data will be abstracted from the CHOA medical record and cancer registry. We will construct a severity score, with one point for 1) admission to the Intensive Care Unit (ICU), 2) ICU-level requirements at admission, 3) stage IV or metastatic disease, and 4) white blood cell count over 100,000/microliter. We will associate this score with age at presentation using logistic regression models among patients overall and stratified by disease type. All regression models will adjust for confounders (e.g., health insurance, race and ethnicity, and local-area social vulnerability level). RESULTS/ANTICIPATED RESULTS: Previous literature has shown increased cancer incidence and mortality in AYAs compared to younger children. Therefore, we hypothesize that AYA patients with a new diagnosis of leukemia or lymphoma will have a higher acuity and severity of illness at presentation than younger patients. We conducted a pilot study analyzing acuity and severity of illness by age, race, ethnicity, and insurance status. Bivariate comparisons suggested patients aged 10 and older were as likely as those younger to have a severity score of more than 0 at diagnosis (OR=0.661 , 95% CI 0.43-1.01). However, this result was collapsed across all hematologic malignancies, did not encompass the entire cohort, and did not address possible confounders; we anticipate our estimates will be different taking these factors into account. DISCUSSION/SIGNIFICANCE: Our work will be the first steps in creating a validated tool to understand disease acuity and severity. By using this tool to characterize presentation by disease type and age, we will identify unmet needs prior to an initial diagnosis of cancer. Our findings inform strategies toward narrowing age disparities in outcomes for AYA hematologic cancers.
- Published
- 2023
- Full Text
- View/download PDF
15. Impact of COVID-19 on the mobility patterns: An investigation of taxi trips in Chicago.
- Author
-
Satyam Mukherjee and Tarun Jain
- Subjects
Medicine ,Science - Abstract
The COVID-19 outbreak has impacted urban transportation mobility throughout the world. In this paper, we investigate the impact of COVID-19 on the urban mobility network's structural characteristics. We contribute to the literature by discussing how various community areas in the city traffic network are impacted by the pandemic. We analyze a large dataset on urban mobility from the city of Chicago and derive various insights. Our analysis of the mobility network structure is important because a better understanding of such networks can help control the spread of the disease by reducing interactions among individuals. We find that the pandemic significantly impacted the structure of the mobility network of taxis in Chicago. Our study reveals some important pointers for policymakers that could potentially aid in developing urban transportation policies during the pandemic.
- Published
- 2022
- Full Text
- View/download PDF
16. Measuring gender attitudes: Developing and testing Implicit Association Tests for adolescents in India.
- Author
-
Tarun Jain, Diva Dhar, Vrinda Kapoor, Vrinda Kapur, and Anita Raj
- Subjects
Medicine ,Science - Abstract
We develop and test gender attitude measures conducted with a school-based sample of adolescents aged 14-17 years in India. We test a measure with survey items and vignettes to capture gender-based value and stereotypes, an Implicit Association Test (IAT) capturing gender-based value, and an IAT capturing gender stereotype. All demonstrate good internal reliability, and both IATs are significantly associated with our survey measure suggesting criterion validity, though not confirming it due to the lack of a gold standard measure on gender attitudes. Finally, construct validity is indicated from the measures' positive significant associations with higher girls' mobility and education. The gender-related IAT tools developed are consistent and valid, and modestly correlated with gender-related behavior outcomes such as mobility and school enrolment.
- Published
- 2022
- Full Text
- View/download PDF
17. Differing Responses of Three Scleractinian Corals from Phuket Coast in the Andaman Sea to Experimental Warming and Hypoxia
- Author
-
Tarun Jain, Pimchanok Buapet, Long Ying, and Mathinee Yucharoen
- Subjects
climate change ,heat stress ,hypoxia ,coral photosynthesis ,coral ecophysiology ,Naval architecture. Shipbuilding. Marine engineering ,VM1-989 ,Oceanography ,GC1-1581 - Abstract
An unprecedented decline in the diversity and health of coral reefs is occurring around the world as they are threatened by multiple global and local stressors. Rising seawater temperature and low dissolved oxygen (DO) conditions are expected to intensify as a result of climate change. Understanding the responses of corals to these stressors is necessary for making predictions and devising mitigation strategies. The three coral species—Porites lutea, Montipora tuberculosa, and Pocillopora verrucosa—were sampled from Patong Bay, Phuket, Thailand, as representatives of different coral morphologies. Coral nubbins were subjected to experimental investigation under ambient conditions (29 °C, DO > 6 mgL−1), heat stress (32 °C), hypoxia (DO < 2 mgL−1), and heat stress + hypoxia treatments. Photosynthetic performance indicators Fv/Fm and Fv/F0 and physiological parameters Symbiodiniaceae density, pigment concentration, and growth rate were quantified. We found P. verrucosa (branching) to be the most sensitive and severely affected by heat stress or hypoxia, more so than P. lutea (massive) and M. tuberculosa (tabular). The combination of these stressors had less impact on these species, except for a decline in growth rate of M. tuberculosa. This study also suggests that the corals respond differently to high temperature and low oxygen, with their sensitivity depending on species. These responses, however, may differ according to the lighting, especially in hypoxic conditions. The results fill a research gap to help predict the vulnerability of these three coral species in shallow reef habitats under climate change scenarios.
- Published
- 2023
- Full Text
- View/download PDF
18. Infection Testing at Scale: An Examination of Pooled Testing Diagnostics
- Author
-
Tarun Jain and Bijendra Nath Jain
- Subjects
Management. Industrial management ,HD28-70 ,Business ,HF5001-6182 - Abstract
Executive Summary In pandemics or epidemics, public health authorities need to rapidly test a large number of individuals without adequate testing kits. We propose a testing protocol to accelerate infection diagnostics by combining multiple samples, and in case of positive results, re-test individual samples. The key insight is that a negative result in the first stage implies negative infection for all individuals. Thus, a single test could rule out infection in multiple individuals. Using simulations, we show that this protocol reduces the required number of testing kits, especially when the infection rate is low, alleviating a key bottleneck for public health authorities in times of pandemics and epidemics such as COVID-19. Our proposed protocol is expected to be more effective when the infection rate is low, which suggests that it is better suited for early stage and large-scale, population-wide testing. However, the managerial trade-off is that the protocol has costs in additional time for returning test results and an increased number of false negatives. We discuss applications of pooled testing in understanding population-wide testing to understand infection prevalence, to diagnose infections in high-risk groups of individuals, and to identify disease cold spots.
- Published
- 2021
- Full Text
- View/download PDF
19. Data set of intrinsically disordered proteins analysed at a local protein conformation level
- Author
-
Akhila Melarkode Vattekatte, Tarun Jairaj Narwani, Aline Floch, Mirjana Maljković, Soubika Bisoo, Nicolas K. Shinada, Agata Kranjc, Jean-Christophe Gelly, Narayanaswamy Srinivasan, Nenad Mitić, and Alexandre G. de Brevern
- Subjects
Computer applications to medicine. Medical informatics ,R858-859.7 ,Science (General) ,Q1-390 - Abstract
Intrinsic Disorder Proteins (IDPs) have become a hot topic since their characterisation in the 90s. The data presented in this article are related to our research entitled “A structural entropy index to analyse local conformations in Intrinsically Disordered Proteins” published in Journal of Structural Biology [1]. In this study, we quantified, for the first time, continuum from rigidity to flexibility and finally disorder. Non-disordered regions were also highlighted in the ensemble of disordered proteins. This work was done using the Protein Ensemble Database (PED), which is a useful database collecting series of protein structures considered as IDPs. The data set consists of a collection of cleaned protein files in classical pdb format that can be readily used as an input with most automatic analysis software. The accompanying data include the coding of all structural information in terms of a structural alphabet, namely Protein Blocks (PBs). An entropy index derived from PBs that allows apprehending the continuum between protein rigidity to flexibility to disorder is included, with information from secondary structure assignment, protein accessibility and prediction of disorder from the sequences. The data may be used for further structural bioinformatics studies of IDPs. It can also be used as a benchmark for evaluating disorder prediction methods. Keywords: Protein disorder, PDB, Ensembles, Entropy, Local protein conformation, Structural alphabet
- Published
- 2020
- Full Text
- View/download PDF
20. Intravaginal culture using INVOCELL: Is it a viable treatment option for infertility?
- Author
-
Elnur Babayev, M.D., M.Sc. and Tarun Jain, M.D.
- Subjects
Diseases of the genitourinary system. Urology ,RC870-923 ,Gynecology and obstetrics ,RG1-991 - Published
- 2021
- Full Text
- View/download PDF
21. In silico analysis of Glanzmann variants of Calf-1 domain of αIIbβ3 integrin revealed dynamic allosteric effect
- Author
-
Matthieu Goguet, Tarun Jairaj Narwani, Rachel Petermann, Vincent Jallu, and Alexandre G. de Brevern
- Subjects
Medicine ,Science - Abstract
Abstract Integrin αIIbβ3 mediates platelet aggregation and thrombus formation. In a rare hereditary bleeding disorder, Glanzmann thrombasthenia (GT), αIIbβ3 expression / function are impaired. The impact of deleterious missense mutations on the complex structure remains unclear. Long independent molecular dynamics (MD) simulations were performed for 7 GT variants and reference structure of the Calf-1 domain of αIIb. Simulations were analysed using a structural alphabet to describe local protein conformations. Common and flexible regions as well as deformable zones were observed in all the structures. The most flexible region of Calf-1 (with highest B-factor) is rather a rigid region encompassed into two deformable zones. Each mutated structure barely showed any modifications at the mutation sites while distant conformational changes were observed. These unexpected results question the relationship between molecular dynamics and allostery; and the role of these long-range effects in the impaired αIIbβ3 expression. This method is aimed at studying all αIIbβ3 sub-domains and impact of missense mutations at local and global structural level.
- Published
- 2017
- Full Text
- View/download PDF
22. Racial disparities and in vitro fertilization (IVF) treatment outcomes: time to close the gap
- Author
-
Tarun Jain
- Subjects
Gynecology and obstetrics ,RG1-991 ,Reproduction ,QH471-489 - Published
- 2020
- Full Text
- View/download PDF
23. Management of venous hypertension following arteriovenous fistula creation for hemodialysis access
- Author
-
Varun Mittal, Aneesh Srivastava, Rakesh Kapoor, Hira Lal, Tarun Javali, Sanjoy Sureka, Nitesh Patidar, Sohrab Arora, and Manoj Kumar
- Subjects
Arteriovenous fistula ,balloon dilatation ,digital subtraction angiography ,embolization ,hemodialysis ,surgical ligation ,venous hypertension ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Introduction: Venous hypertension (VH) is a distressing complication following the creation of arteriovenous fistula (AVF). The aim of management is to relieve edema with preservation of AVF. Extensive edema increases surgical morbidity with the loss of hemodialysis access. We present our experience in management of VH. Methods: A retrospective study was conducted on 37 patients with VH managed between July 2005 to May 2014. Patient demographics, evaluation, and procedures performed were noted. A successful outcome of management with surgical ligation (SL), angioembolization (AE), balloon dilatation (BD) or endovascular stent (EVS) was defined by immediate disappearance of thrill and murmur with resolution of edema in the next 48-72 h, no demonstrable flow during check angiogram and resolution of edema with preservation of AVF respectively. Results: All 8 distal AVF had peripheral venous stenosis and were managed with SL in 7 and BD in one patient. In 29 proximal AVF, central and peripheral venous stenosis was present in 16 and 13 patients respectively. SL, AE, BD, and BD with EVS were done in 18, 5, 4, and 3 patients, respectively. All patients had a successful outcome. SL was associated with wound related complications in 11 (29.73 %) patients. A total of 7 AVF were salvaged. One had restenosis after BD and was managed with AE. BD, EVS, and AE had no associated morbidity. Conclusions: Management of central and peripheral venous stenosis with VH should be individualized and in selected cases it seems preferable to secure a new access in another limb and close the native AVF in edematous limb for better overall outcome.
- Published
- 2016
- Full Text
- View/download PDF
24. A Novel method of ensuring safe and accurate dilatation during percutaneous nephrolithotomy
- Author
-
Tarun Javali, Amey Pathade, and H. K. Nagaraj
- Subjects
Nephrostomy ,Percutaneous ,Ureteroscopy ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
ABSTRACT Objective: To report our technique that helps locate the guidewire into the ureter enabling safe dilatation during PCNL. Materials and Methods: Cases in which the guidewire failed to pass into the ureter following successful puncture of the desired calyx were subjected to this technique. A second guidewire was passed through the outer sheath of a 9 Fr. metallic dilator cannula, passed over the first guidewire. The cannula and outer sheath were removed, followed by percutaneous passage of a 6/7.5 Fr ureteroscope between the two guidewires, monitoring its progress through both the endoscopic and fluoroscopic monitors. Once the stone was visualized in the calyx a guidewire was passed through the working channel and maneuvered past the stone into the pelvis and ureter under direct endoscopic vision. This was followed by routine tract dilatation. Results: This technique was employed in 85 out of 675 cases of PCNL carried out at our institute between Jan 2010 to June 2014. The mean time required for our technique, calculated from the point of introduction of the ureteroscope untill the successful passage of the guidewire down into the ureter was 95 seconds. There were no intraoperative or postoperative complications as a result of this technique. Guidewire could be successfully passed into the ureter in 82 out of 85 cases. Conclusions: Use of the ureteroscope introduced percutaneously through the puncture site in PCNL, is a safe and effective technique that helps in maneuvering the guidewire down into the ureter, which subsequently enables safe dilatation.
- Published
- 2015
- Full Text
- View/download PDF
25. Spiral laminar flow, the earliest predictor for maturation of arteriovenous fistula for hemodialysis access
- Author
-
Aneesh Srivastava, Varun Mittal, Hira Lal, Tarun Javali, Nitesh Patidar, Sanjoy Sureka, and Shikhar Aggarwal
- Subjects
Doppler ,fistula ,flow patterns ,hemodialysis ,predictor ,spiral laminar ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Introduction: Arteriovenous fistula (AVF) is the gold standard vascular access for hemodialysis (HD). A thrill or murmur immediately after creation of AVF is considered a predictive sign of success. However, this does not ensure final maturation for successful HD. Our objective was to determine different clinical and duplex parameters within AVF to predict maturation and subsequent successful HD. Materials and Methods: A prospective observational study was conducted on 187 patients who had AVF formation from July 2012 to May 2013. Following surgery, all patients had Doppler ultrasound (DU) on Days 0 and 7. Doppler parameters noted in the outflow vein were: Thrill, broadening of spectral waveform with increased peak systolic velocity (PSV) and spiral laminar flow (SLF). Patients with at least one positive parameter at Day 0 were followed-up serially and underwent repeat Doppler imaging on Day 7. Patients with the absence of all three parameters on Day 0 were excluded from the study. Endpoint was maturation of AVF, i.e. successful HD. Statistical analysis was performed with binary logistic regression, to find out the strongest and earliest predictor for maturation of AVF using SPSS version 20. Results: SLF and broadening of spectral waveform with increased PSV were found to have a significant association with maturation (P = 0.0001). Presence of SLF on Day 0 most strongly predicted maturation. Presence of thrill or murmur could not predict the maturation. Conclusions: SLF pattern in AVF is the most important and the earliest predictor of maturation.
- Published
- 2015
- Full Text
- View/download PDF
26. Lateral Anal Sphincterotomy for Chronic Anal Fissures- A Comparison of Outcomes and Complications under Local Anaesthesia Versus Spinal Anaesthesia
- Author
-
Ravikumar Manoharan, Tarun Jacob, Santosh Benjamin, and Sumonth Kirishnan
- Subjects
anorectal condition ,fissure-in-ano ,sphincter spasm ,Medicine - Abstract
Introduction: Fissure-in-Ano is one of the common and most painful anorectal conditions encountered in surgical practice. Inspite of several conservative treatment options, surgical treatment in the form of Lateral Anal Spincterotomy (LAS) remains the gold standard of treatment for Chronic Anal Fissures (CAF). However, LAS is often done under spinal or general anaesthesia incurring huge treatment costs and hospital stay. Aim: To study if LAS can be treated with Local Anaesthesia (LA) thereby, reducing the costs and the anaesthetic risk to patients with no significant change in the surgical ease or clinical outcome. Materials and Methods: A total of 79 patients with chronic fissure underwent randomized allocation to two treatment arms – The first to undergo LAS under LA and the second under Spinal Anaesthesia (SA). The primary outcome variables studied were complications like post-operative pain, infections, healing rate of fissure and incontinence rates. Secondary outcome variables studied were cost, hospital stay and need for additional anaesthetic. Results: A total of 79 patients underwent LAS procedure. A total of 42 patients had LA and 39 patients had SA. There was no statistically significant difference in the healing rate, pain, infection and incontinence rates between the two groups. Moreover, the LA group incurred lower cost, reduced hospital stay and reduced risk of anaesthesia. Conclusions: LAS can be satisfactorily performed under local anaesthesia with no increased risk of pain or complications, and is best suited for resource-poor surgical settings.
- Published
- 2017
- Full Text
- View/download PDF
27. Pleomorphic undifferentiated sarcoma of urinary bladder with calcified pulmonary metastasis: A rare entity
- Author
-
Prasad Mylarappa, Prathvi, Tarun Javali, D Ramesh, Vinay Prabhu, and Aarathi R Rau
- Subjects
Calcified pulmonary metastasis ,immunohistochemistry ,pleomorphic undifferentiated sarcoma of urinary bladder ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
We report the case of a 29-year-old male who presented to us with hematuria, dysuria and bilateral flank pain. On evaluation, the patient was found to have primary pleomorphic undifferentiated sarcoma of bladder with calcified pulmonary metastasis, confirmed with computerized tomography scan and immunohistochemistry.
- Published
- 2013
- Full Text
- View/download PDF
28. Protein flexibility in the light of structural alphabets
- Author
-
Pierrick eCraveur, Agnel Praveen eJoseph, Jeremy eEsque, Tarun JaiRaj eNarwani, Floriane eNoel, Nicolas eShinada, Matthieu eGoguet, Léonard eSylvain, Pierre ePoulain, Olivier eBertrand, Guilhem eFaure, Joseph eRebehmed, Amine eGhozlane, Lakshmipuram S Swapna, Ramachandra M Bhaskara, Jonathan eBarnoud, Stéphane eTéletchéa, Vincent eJallu, Jiri eCerny, Bohdan eSchneider, Catherine eEtchebest, Narayanaswamy eSrinivasan, Jean-Christophe eGelly, and Alexandre G. de Brevern
- Subjects
Amino Acids ,Protein Folding ,disorder ,Flexibility ,allostery ,Protein complexes ,Biology (General) ,QH301-705.5 - Abstract
Protein structures are valuable tools to understand protein function. Nonetheless, proteins are often considered as rigid macromolecules while their structures exhibit specific flexibility, which is essential to complete their functions. Analyses of protein structures and dynamics are often performed with a simplified three-state description, i.e. the classical secondary structures. . More precise and complete description of protein backbone conformation can be obtained using libraries of small protein fragments that are able to approximate every part of protein structures. These libraries, called structural alphabets (SAs), have been widely used in structure analysis field, from definition of ligand binding sites to superimposition of protein structures. SAs are also well suited to analyze the dynamics of protein structures.Here, we review innovative approaches that investigate protein flexibility based on SAs description. Coupled to various sources of experimental data (e.g. B-factor) and computational methodology (e.g. Molecular Dynamic simulation), SAs turn out to be powerful tools to analyze protein dynamics, e.g. to examine allosteric mechanisms in large set of structures in complexes, to identify order/disorder transition. SAs were also shown to be quite efficient to predict protein flexibility from amino-acid sequence. Finally, in this review, we exemplify the interest of SAs for studying flexibility with different cases of proteins implicated in pathologies and diseases.
- Published
- 2015
- Full Text
- View/download PDF
29. Virilizing lipoadenoma of the adrenal gland in a pre-pubertal girl: A rare case
- Author
-
Prasad Mylarappa, Amey Pathade, Tarun Javali, and D Ramesh
- Subjects
Adenolipoma ,adrenal gland ,hirsutism ,virilization ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
We report a case of a 12-year-old girl who presented with the history of hirsutism. On evaluation, she was found to have testosterone secreting adrenal gland tumor. Histopathological examination of the adrenalectomy specimen revealed a lipoadenoma.
- Published
- 2014
- Full Text
- View/download PDF
30. Acute pancreatitis and development of pancreatic pseudo cyst after extra corporeal shock wave lithotripsy to a left renal calculus: A rare case with review of literature
- Author
-
Prasad Mylarappa, Tarun Javali, Prathvi, and D Ramesh
- Subjects
Extracorporeal shock wave lithotripsy ,pancreatitis ,pseudocyst of pancreas ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Extracorporeal shock wave lithotripsy (SWL) is considered the standard of care for the treatment of small upper ureteric and renal calculi. A few centers have extended its use to the treatment of bile duct calculi and pancreatic calculi. The complication rates with SWL are low, resulting in its wide spread acceptance and usage. However, some of the serious complications reported in 1% of patients include acute pancreatitis, perirenal hematoma, urosepsis, venous thrombosis, biliary obstruction, bowel perforation, lung injury, rupture of aortic aneurysm and intracranial hemorrhage. To our knowledge, only six cases of acute pancreatitis or necrotizing pancreatitis following SWL have been documented in the literature. Herein, we report a rare case of acute pancreatitis and formation of a pseudo cyst following SWL for left renal pelvic calculus.
- Published
- 2014
- Full Text
- View/download PDF
31. A rare case of kaposiform hemangioendothelioma presenting as intussusception in a 4-month-old child without Kasabach-Merrit syndrome: A case report
- Author
-
Jujju Jacob Kurian, Ravi Kishore, Tarun Jacob John, and Harshad Parmer
- Subjects
KHE-Kaposiform hemangioendothelioma ,KMS-Kasabach Merrit syndrome ,Colo colic intussusception ,Pediatrics ,RJ1-570 ,Surgery ,RD1-811 - Abstract
We report the identification of Kaposiform hemangioendothelioma of the cecum presenting as colocolic intussusception in a 4-month-old boy without Kasabach-Merrit syndrome. To our knowledge this is the first reported case in the literature of such a presentation.
- Published
- 2014
- Full Text
- View/download PDF
32. RE: A Novel method of ensuring safe and accurate dilatation during percutaneous nephrolithotomy
- Author
-
Tarun Javali, Amey Pathade, and H. K. Nagaraj
- Subjects
Diseases of the genitourinary system. Urology ,RC870-923 - Published
- 2016
- Full Text
- View/download PDF
33. A positive magnetic resonance spectroscopic imaging with negative initial biopsy may predict future detection of prostate cancer
- Author
-
Durgesh Kumar Dwivedi, Virendra Kumar, Tarun Javali, Amit K Dinda, Sanjay Thulkar, Naranmangalam R Jagannathan, and Rajeev Kumar
- Subjects
Biopsy ,magnetic resonance spectroscopic imaging ,prostate cancer ,prostate specific antigen ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Current diagnostic modalities for early prostate cancer (PCa) lack sufficient sensitivity and specificity. Magnetic resonance spectroscopic imaging (MRSI) detects biochemical changes in tissues that may predate histological changes that can be diagnosed on a biopsy. Men with MRSI suggestive of malignancy but negative biopsy may thus be harboring cancer that manifests at a later date. We report the first case in our cohort of men with positive MRSI but negative initial biopsy who, 6 years after the initial MRSI, were detected to have PCa despite a "normal" prostate specific antigen (
- Published
- 2012
- Full Text
- View/download PDF
34. A Rare Case of Erdheim-Chester Disease and Langerhans Cell Histiocytosis Overlap Syndrome
- Author
-
Shahzaib Nabi, Adeel Arshad, Tarun Jain, Fawad Virk, Rohit Gulati, and Rana Awdish
- Subjects
Pathology ,RB1-214 - Abstract
A 48-year-old woman with a past medical history of seizures and end-stage renal disease secondary to obstructive uropathy from retroperitoneal fibrosis presented to the emergency department with seizures and altered mental status. A Glasgow Coma Scale of 4 prompted intubation, and she was subsequently admitted to the intensive care unit. Magnetic resonance imaging of the brain performed to elucidate the aetiology of her seizure showed a dural-based mass within the left temporoparietal lobe as well as mass lesions within the orbits. Further imaging showed extensive retroperitoneal fibrosis extending to the mediastinum with involvement of aorta and posterior pleural space. Imaging of the long bones showed bilateral sclerosis and cortical thickening of the diaphyses. Imaging of the maxillofacial structures showed osseous destructive lesions involving the mandible. These clinical and radiological features were consistent with a diagnosis of Erdheim-Chester disease; however, the patient’s skin biopsy was consistent with Langerhans cell histiocytosis.
- Published
- 2015
- Full Text
- View/download PDF
35. Tunable emission in surface passivated Mn-ZnS nanophosphors and its application for Glucose sensing
- Author
-
Manoj Sharma, Tarun Jain, Sukhvir Singh, and O. P. Pandey
- Subjects
Physics ,QC1-999 - Abstract
The present work describes the tunable emission in inorganic-organic hybrid NPs which can be useful for optoelectronic and biosensing applications. In this work, Mn- ZnS nanoparticles emitting various colors, including blue and orange, were synthesized by simple chemical precipitation method using chitosan as a capping agent. Earlier reports describe that emission color characteristics in nanoparticles are tuned by varying particle size and with doping concentration. Here in this article tunable emission has been achieved by varying excitation wavelength in a single sample. This tunable emission property with high emission intensity was further achieved by changing capping concentration keeping host Mn-ZnS concentration same. Tunable emission is explained by FRET mechanism. Commission Internationale de l’Eclairage (CIE) chromaticity coordinates shifts from (0.273, 0.20) and (0.344, 0.275) for same naocrystals by suitably tuning excitation energy from higher and lower ultra-violet (UV) range. Synthesized nanoparticles have been characterized by X-ray diffraction, SEM, HRTEM, UV- Visible absorption and PL spectroscopy for structural and optical studies. Using tunable emission property, these highly emissive nanoparticles functionalized with biocompatible polymer chitosan were further used for glucose sensing applications.
- Published
- 2012
- Full Text
- View/download PDF
36. Fetus in bladder
- Author
-
Kailash Banale, Tarun Javali, Prakash Babu, G S Jyothi, Prathvi Shetty, H K Nagaraj, and S Gaurishankar
- Subjects
Fetus in bladder ,hematuria ,termination of pregnancy ,vesicouterine fistula ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
This is the first reported case of vesicouterine fistula presenting with a fully formed dead fetus in the urinary bladder.
- Published
- 2013
- Full Text
- View/download PDF
37. Utility of single photon emission computed tomography/CT hybrid imaging over planar I-131 whole body scans in detection of adrenal metastases in differentiated thyroid cancer
- Author
-
Nishikant Damle, Chandrasekhar Bal, Sachin Jain, Ajiv Mishra, and Tarun Jain
- Subjects
Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Published
- 2013
- Full Text
- View/download PDF
38. ′Hockey stick′ sign on 99m Technetium pertechnetate thyroid scan
- Author
-
Nishikant A Damle, Chandrasekhar Bal, Manas Sahoo, Tarun Jain, and Ajiv Mishra
- Subjects
Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Published
- 2012
- Full Text
- View/download PDF
39. Comparative Transcriptomics and Co-Expression Networks Reveal Tissue- and Genotype-Specific Responses of qDTYs to Reproductive-Stage Drought Stress in Rice ( Oryza sativa L.).
- Author
-
Tarun JA, Mauleon R, Arbelaez JD, Catausan S, Dixit S, Kumar A, Brown P, Kohli A, and Kretzschmar T
- Subjects
- Computational Biology, Fertility, Gene Expression Profiling, Gene Expression Regulation, Plant, Organ Specificity, Oryza growth & development, Photosynthesis, Plant Leaves genetics, Plant Leaves growth & development, Plant Proteins metabolism, Droughts, Gene Regulatory Networks, Oryza genetics, Plant Proteins genetics, Quantitative Trait Loci, Stress, Physiological, Transcriptome
- Abstract
Rice ( Oryza sativa L.) is more sensitive to drought stress than other cereals. To dissect molecular mechanisms underlying drought-tolerant yield in rice, we applied differential expression and co-expression network approaches to transcriptomes from flag-leaf and emerging panicle tissues of a drought-tolerant yield introgression line, DTY-IL, and the recurrent parent Swarna, under moderate reproductive-stage drought stress. Protein turnover and efficient reactive oxygen species scavenging were found to be the driving factors in both tissues. In the flag-leaf, the responses further included maintenance of photosynthesis and cell wall reorganization, while in the panicle biosynthesis of secondary metabolites was found to play additional roles. Hub genes of importance in differential drought responses included an expansin in the flag-leaf and two peroxidases in the panicle. Overlaying differential expression data with allelic variation in DTY-IL quantitative trait loci allowed for the prioritization of candidate genes. They included a differentially regulated auxin-responsive protein, with DTY-IL-specific amino acid changes in conserved domains, as well as a protein kinase with a DTY-IL-specific frameshift in the C-terminal region. The approach highlights how the integration of differential expression and allelic variation can aid in the discovery of mechanism and putative causal contribution underlying quantitative trait loci for drought-tolerant yield.
- Published
- 2020
- Full Text
- View/download PDF
40. Genome-wide association and gene validation studies for early root vigour to improve direct seeding of rice.
- Author
-
Wang F, Longkumer T, Catausan SC, Calumpang CLF, Tarun JA, Cattin-Ortola J, Ishizaki T, Pariasca Tanaka J, Rose T, Wissuwa M, and Kretzschmar T
- Subjects
- Chromosomes, Plant genetics, Crop Production, Genes, Plant genetics, Genes, Plant physiology, Genome-Wide Association Study, Haplotypes, Linkage Disequilibrium genetics, Oryza growth & development, Oryza physiology, Plant Breeding methods, Plant Roots physiology, Quantitative Trait Loci genetics, Quantitative Trait, Heritable, Oryza genetics, Plant Roots growth & development
- Abstract
Elucidation of the genetic control of rice seedling vigour is now paramount with global shifts towards direct seeding of rice and the consequent demand for early vigour traits in breeding programmes. In a genome-wide association study using an indica-predominant diversity panel, we identified quantitative trait loci (QTLs) for root length and root number in rice seedlings. Among the identified QTLs, one QTL for lateral root number on chromosome 11, qTIPS-11, was associated with a 32.4% increase in lateral root number. The locus was validated in independent backgrounds, and a predicted glycosyl hydrolase, TIPS-11-9, was identified as the causal gene for observed phenotypic differences. TIPS-11-9 was differentially expressed in emerging lateral roots of contrasting qTIPS-11 haplotypes, which was likely due to differences in cis-regulatory elements and auxin responsiveness. Abolishment of Tips-11-9 function through T-DNA insertion in a qTIPS-11-positive background resulted in a reduction of lateral root number, which negatively affected biomass accumulation, particularly under phosphorous-limiting conditions. Marker-assisted introgression of qTIPS-11 into modern indica varieties will aid in the generation of varieties adapted to direct seeding and thus facilitate the adoption of direct seeding practices in tropical Asia., (© 2018 John Wiley & Sons Ltd.)
- Published
- 2018
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.