1. Structure and Oligonucleotide Binding Efficiency of Differently Prepared Click Chemistry-Type DNA Microarray Slides Based on 3-Azidopropyltrimethoxysilane
- Author
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Tomasz Ratajczak, Agnieszka Ranecka, Łukasz Kościński, Stefan Jurga, Emilia Frydrych-Tomczak, N. Michalak, T. Luciński, Hieronim Maciejewski, Mikołaj Lewandowski, and Marcin Chmielewski
- Subjects
Technology ,functional layers ,Materials science ,organofunctional silanes ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Article ,chemistry.chemical_compound ,X-ray photoelectron spectroscopy ,General Materials Science ,atomic force microscopy (AFM) ,structure ,Microscopy ,QC120-168.85 ,Oligonucleotide ,QH201-278.5 ,X-ray photoelectron spectroscopy (XPS) ,021001 nanoscience & nanotechnology ,Engineering (General). Civil engineering (General) ,Silane ,0104 chemical sciences ,TK1-9971 ,X-ray reflectivity ,chemistry ,Chemical engineering ,Descriptive and experimental mechanics ,Silanization ,click chemistry ,Click chemistry ,Surface modification ,Azide ,Electrical engineering. Electronics. Nuclear engineering ,TA1-2040 ,DNA microarrays ,0210 nano-technology ,surface modification - Abstract
The structural characterization of glass slides surface-modified with 3-azidopropyltrimethoxysilane and used for anchoring nucleic acids, resulting in the so-called DNA microarrays, is presented. Depending on the silanization conditions, the slides were found to show different oligonucleotide binding efficiency, thus, an attempt was made to correlate this efficiency with the structural characteristics of the silane layers. Atomic force microscopy (AFM), X-ray photoelectron spectroscopy (XPS) and X-ray reflectometry (XRR) measurements provided information on the surface topography, chemical composition and thickness of the silane films, respectively. The surface for which the best oligonucleotides binding efficiency is observed, has been found to consist of a densely-packed silane layer, decorated with a high-number of additional clusters that are believed to host exposed azide groups.
- Published
- 2021
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