1. Development of succinimide-based inhibitors for the mitochondrial rhomboid protease PARL.
- Author
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Parsons WH, Rutland NT, Crainic JA, Cardozo JM, Chow AS, Andrews CL, and Sheehan BK
- Subjects
- Benzenesulfonates chemical synthesis, DNA-Binding Proteins antagonists & inhibitors, Endopeptidases, Escherichia coli enzymology, Escherichia coli Proteins antagonists & inhibitors, HEK293 Cells, Humans, Membrane Proteins antagonists & inhibitors, Protease Inhibitors chemical synthesis, Small Molecule Libraries chemical synthesis, Small Molecule Libraries pharmacology, Succinimides chemical synthesis, Sulfonamides chemical synthesis, Benzenesulfonates pharmacology, Metalloproteases antagonists & inhibitors, Mitochondrial Proteins antagonists & inhibitors, Protease Inhibitors pharmacology, Succinimides pharmacology, Sulfonamides pharmacology
- Abstract
While the biochemistry of rhomboid proteases has been extensively studied since their discovery two decades ago, efforts to define the physiological roles of these enzymes are ongoing and would benefit from chemical probes that can be used to manipulate the functions of these proteins in their native settings. Here, we describe the use of activity-based protein profiling (ABPP) technology to conduct a targeted screen for small-molecule inhibitors of the mitochondrial rhomboid protease PARL, which plays a critical role in regulating mitophagy and cell death. We synthesized a series of succinimide-containing sulfonyl esters and sulfonamides and discovered that these compounds serve as inhibitors of PARL with the most potent sulfonamides having submicromolar affinity for the enzyme. A counterscreen against the bacterial rhomboid protease GlpG demonstrates that several of these compounds display selectivity for PARL over GlpG by as much as two orders of magnitude. Both the sulfonyl ester and sulfonamide scaffolds exhibit reversible binding and are able to engage PARL in mammalian cells. Collectively, our findings provide encouraging precedent for the development of PARL-selective inhibitors and establish N-[(arylsulfonyl)oxy]succinimides and N-arylsulfonylsuccinimides as new molecular scaffolds for inhibiting members of the rhomboid protease family., (Copyright © 2021 Elsevier Ltd. All rights reserved.)
- Published
- 2021
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