18 results on '"Spanu I."'
Search Results
2. Reproductive and genetic consequences of extreme isolation in Salix herbacea L. at the rear edge of its distribution
- Author
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Carbognani, M., Piotti, A., Leonardi, S., Pasini, L., Spanu, I., Vendramin, G. G., Tomaselli, M., and Petraglia, A.
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- 2019
Catalog
3. Development and Characterization of Three Highly Informative EST-SSR Multiplexes for Pinus halepensis mill. and their Transferability to Other Mediterranean Pines
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Leonarduzzi, C., Spanu, I., Labriola, M., González-Martínez, S. C., Piotti, A., and Vendramin, G. G.
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- 2016
- Full Text
- View/download PDF
4. The GenTree Leaf Collection:inter‐ and intraspecific leaf variation in seven forest tree species in Europe
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Benavides, R. (Raquel), Carvalho, B. (Barbara), Bastias, C. C. (Cristina C.), Lopez-Quiroga, D. (David), Mas, A. (Antonio), Cavers, S. (Stephen), Gray, A. (Alan), Albet, A. (Audrey), Alia, R. (Ricardo), Ambrosio, O. (Olivier), Aravanopoulos, F. (Filippos), Aunon, F. (Francisco), Avanzi, C. (Camilla), Avramidou, E. V. (Evangelia V.), Bagnoli, F. (Francesca), Ballesteros, E. (Eduardo), Barbas, E. (Evangelos), Bastien, C. (Catherine), Bernier, F. (Frederic), Bignalet, H. (Henry), Bouic, D. (Damien), Brunetto, W. (William), Buchovska, J. (Jurata), Cabanillas-Saldana, A. M. (Ana M.), Cheval, N. (Nicolas), Climent, J. M. (Jose M.), Correard, M. (Marianne), Cremer, E. (Eva), Danusevicius, D. (Darius), Dauphin, B. (Benjamin), Del Cano, F. (Fernando), Denou, J.-L. (Jean-Luc), Dokhelar, B. (Bernard), Dourthe, R. (Remi), Farsakoglou, A.-M. (Anna-Maria), Fera, A. (Andreas), Fonti, P. (Patrick), Ganopoulos, I. (Ioannis), Garcia del Barrio, J. M. (Jose M.), Gilg, O. (Olivier), Gonzalez-Martinez, S. C. (Santiago C.), Graf, R. (Rene), Grivet, D. (Delphine), Gugerli, F. (Felix), Hartleitner, C. (Christoph), Heer, K. (Katrin), Hollenbach, E. (Enja), Hurel, A. (Agathe), Issehuth, B. (Bernard), Jean, F. (Florence), Jorge, V. (Veronique), Jouineau, A. (Arnaud), Kappner, J.-P. (Jan-Philipp), Kärkkainen, K. (Katri), Kesälahti, R. (Robert), Knutzen, F. (Florian), Kujala, S. T. (Sonja T.), Kumpula, T. (Timo), Labriola, M. (Mariaceleste), Lalanne, C. (Celine), Lambertz, J. (Johannes), Lascoux, M. (Martin), Le Provost, G. (Gregoire), Liesebach, M. (Mirko), Malliarou, E. (Ermioni), Marchon, J. (Jeremy), Mariotte, N. (Nicolas), Martinez-Sancho, E. (Elisabet), Matesanz, S. (Silvia), Meischner, H. (Helge), Michotey, C. (Celia), Milesi, P. (Pascal), Morganti, S. (Sandro), Myking, T. (Tor), Nilsen, A. E. (Anne E.), Notivol, E. (Eduardo), Opgenoorth, L. (Lars), ostreng, G. (Geir), Pakull, B. (Birte), Piotti, A. (Andrea), Plomion, C. (Christophe), Poinot, N. (Nicolas), Pringarbe, M. (Mehdi), Puzos, L. (Luc), Pyhajarvi, T. (Tanja), Raffin, A. (Annie), Ramirez-Valiente, J. A. (Jose A.), Rellstab, C. (Christian), Richter, S. (Sebastian), Robledo-Arnuncio, J. J. (Juan J.), San Segundo, S. (Sergio), Savolainen, O. (Outi), Schneck, V. (Volker), Schueler, S. (Silvio), Scotti, I. (Ivan), Semerikov, V. (Vladimir), Henrik Sonstebo, J. (Jorn), Spanu, I. (Ilaria), Thevenet, J. (Jean), Tollefsrud, M. M. (Mari Mette), Turion, N. (Norbert), Vendramin, G. G. (Giovanni Giuseppe), Villar, M. (Marc), Westin, J. (Johan), Fady, B. (Bruno), and Valladares, F. (Fernando) more...
- Subjects
tree species ,leaf economics spectrum ,leaf functional traits ,phenotypic variation ,intraspecific variability ,European forests - Abstract
Motivation: Trait variation within species can reveal plastic and/or genetic responses to environmental gradients, and may indicate where local adaptation has occurred. Here, we present a dataset of rangewide variation in leaf traits from seven of the most ecologically and economically important tree species in Europe. Sample collection and trait assessment are embedded in the GenTree project (EU‐Horizon 2020), which aims at characterizing the genetic and phenotypic variability of forest tree species to optimize the management and sustainable use of forest genetic resources. Our dataset captures substantial intra‐ and interspecific leaf phenotypic variability, and provides valuable information for studying the relationship between ecosystem functioning and trait variability of individuals, and the response and resilience of species to environmental changes. Main types of variable contained: We chose morphological and chemical characters linked to trade‐offs between acquisition and conservation of resources and water use, namely specific leaf area, leaf size, carbon and nitrogen content and their ratio, and the isotopic signature of stable isotope ¹³C and ¹⁵N in leaves. Spatial location and grain: We surveyed between 18 and 22 populations per species, 141 in total, across Europe. Time period: Leaf sampling took place between 2016 and 2017. Major taxa and level of measurement: We sampled at least 25 individuals in each population, 3,569 trees in total, and measured traits in 35,755 leaves from seven European tree species, i.e. the conifers Picea abies, Pinus pinaster and Pinus sylvestris, and the broadleaves Betula pendula, Fagus sylvatica, Populus nigra and Quercus petraea. Software format: The data files are in ASCII text, tab delimited, not compressed. more...
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- 2021
5. WOODIV, a database of occurrences, functional traits, and phylogenetic data for all Euro-Mediterranean trees
- Author
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Monnet A.-C., Cilleros K., Medail F., Albassatneh M.C., Arroyo J., Bacchetta G., Bagnoli F., Barina Z., Cartereau M., Casajus N., Dimopoulos P., Domina G., Doxa A., Escudero M., Fady B., Hampe A., Matevski V., Misfud S., Nikolic T., Pavon D., Roig A., Barea E.S., Spanu I., Strid A., Vendramin G.G., and Leriche A. more...
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Environmental Space ,Biogeography ,Maximum Entropy - Abstract
Trees play a key role in the structure and function of many ecosystems worldwide. In the Mediterranean Basin, forests cover approximately 22% of the total land area hosting a large number of endemics (46 species). Despite its particularities and vulnerability, the biodiversity of Mediterranean trees is not well known at the taxonomic, spatial, functional, and genetic levels required for conservation applications. The WOODIV database fills this gap by providing reliable occurrences, four functional traits (plant height, seed mass, wood density, and specific leaf area), and sequences from three DNA-regions (rbcL, matK, and trnH-psbA), together with modelled occurrences and a phylogeny for all 210 Euro-Mediterranean tree species. We compiled, homogenized, and verified occurrence data from sparse datasets and collated them on an INSPIRE-compliant 10 × 10 km grid. We also gathered functional trait and genetic data, filling existing gaps where possible. The WOODIV database can benefit macroecological studies in the fields of conservation, biogeography, and community ecology. more...
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- 2021
- Full Text
- View/download PDF
6. The GenTree Platform:growth traits and tree-level environmental data in 12 European forest tree species
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Opgenoorth, L. (Lars), Benjamin, D. (Dauphin), Benavides, R. (Raquel), Heer, K. (Katrin), Alizoti, P. (Paraskevi), Martinez-Sancho, E. (Elisabet), Alia, R. (Ricardo), Ambrosio, O. (Olivier), Audrey, A. (Albet), Aunon, F. (Francisco), Avanzi, C. (Camilla), Avramidou, E. (Evangelia), Bagnoli, F. (Francesca), Barbas, E. (Evangelos), Bastias, C. C. (Cristina C.), Bastien, C. (Catherine), Ballesteros, E. (Eduardo), Beffa, G. (Giorgia), Bernier, F. (Frederic), Bignalet, H. (Henri), Bodineau, G. (Guillaume), Bouic, D. (Damien), Brodbeck, S. (Sabine), Brunetto, W. (William), Buchovska, J. (Jurata), Buy, M. (Melanie), Cabanillas-Saldana, A. M. (Ana M.), Carvalho, B. (Barbara), Cheval, N. (Nicolas), Climent, J. M. (Jose M.), Correard, M. (Marianne), Cremer, E. (Eva), Danusevicius, D. (Darius), Del Cano, F. (Fernando), Denou, J.-L. (Jean-Luc), di Gerardi, N. (Nicolas), Dokhelar, B. (Bernard), Ducousso, A. (Alexis), Nilsen, A. E. (Anne Eskild), Farsakoglou, A.-M. (Anna-Maria), Fonti, P. (Patrick), Ganopoulos, I. (Ioannis), Garcia del Barrio, J. M. (Jose M.), Gilg, O. (Olivier), Gonzalez-Martinez, S. C. (Santiago C.), Graf, R. (Rene), Gray, A. (Alan), Grivet, D. (Delphine), Gugerli, F. (Felix), Hartleitner, C. (Christoph), Hollenbach, E. (Enja), Hurel, A. (Agathe), Issehut, B. (Bernard), Jean, F. (Florence), Jorge, V. (Veronique), Jouineau, A. (Arnaud), Kappner, J.-P. (Jan-Philipp), Karkkainen, K. (Katri), Kesälahti, R. (Robert), Knutzen, F. (Florian), Kujala, S. T. (Sonja T.), Kumpula, T. A. (Timo A.), Labriola, M. (Mariaceleste), Lalanne, C. (Celine), Lambertz, J. (Johannes), Lascoux, M. (Martin), Lejeune, V. (Vincent), Le-Provost, G. (Gregoire), Levillain, J. (Joseph), Liesebach, M. (Mirko), Lopez-Quiroga, D. (David), Meier, B. (Benjamin), Malliarou, E. (Ermioni), Marchon, J. (Jeremy), Mariotte, N. (Nicolas), Mas, A. (Antonio), Matesanz, S. (Silvia), Meischner, H. (Helge), Michotey, C. (Celia), Milesi, P. (Pascal), Morganti, S. (Sandro), Nievergelt, D. (Daniel), Notivol, E. (Eduardo), Ostreng, G. (Geir), Pakull, B. (Birte), Perry, A. (Annika), Piotti, A. (Andrea), Plomion, C. (Christophe), Poinot, N. (Nicolas), Pringarbe, M. (Mehdi), Puzos, L. (Luc), Pyhajarvi, T. (Tanja), Raffin, A. (Annie), Ramirez-Valiente, J. A. (Jose A.), Rellstab, C. (Christian), Remi, D. (Dourthe), Richter, S. (Sebastian), Robledo-Arnuncio, J. J. (Juan J.), San Segundo, S. (Sergio), Savolainen, O. (Outi), Schueler, S. (Silvio), Schneck, V. (Volker), Scotti, I. (Ivan), Semerikov, V. (Vladimir), Slamova, L. (Lenka), Sonstebo, J. H. (Jorn Henrik), Spanu, I. (Ilaria), Thevenet, J. (Jean), Tollefsrud, M. M. (Mari Mette), Turion, N. (Norbert), Vendramin, G. G. (Giovanni Giuseppe), Villar, M. (Marc), von Arx, G. (Georg), Westin, J. (Johan), Fady, B. (Bruno), Myking, T. (Tor), Valladares, F. (Fernando), Aravanopoulos, F. A. (Filippos A.), and Cavers, S. (Stephen) more...
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crown size ,fruit number ,bark thickness ,DBH ,regeneration ,branch angle ,soil depth ,forking index ,stem straightness ,height - Abstract
Background: Progress in the field of evolutionary forest ecology has been hampered by the huge challenge of phenotyping trees across their ranges in their natural environments, and the limitation in high-resolution environmental information. Findings: The GenTree Platform contains phenotypic and environmental data from 4,959 trees from 12 ecologically and economically important European forest tree species: Abies alba Mill. (silver fir), Betula pendula Roth. (silver birch), Fagus sylvatica L. (European beech), Picea abies (L.) H. Karst (Norway spruce), Pinus cembra L. (Swiss stone pine), Pinus halepensis Mill. (Aleppo pine), Pinus nigra Arnold (European black pine), Pinus pinaster Aiton (maritime pine), Pinus sylvestris L. (Scots pine), Populus nigra L. (European black poplar), Taxus baccata L. (English yew), and Quercus petraea (Matt.) Liebl. (sessile oak). Phenotypic (height, diameter at breast height, crown size, bark thickness, biomass, straightness, forking, branch angle, fructification), regeneration, environmental in situ measurements (soil depth, vegetation cover, competition indices), and environmental modeling data extracted by using bilinear interpolation accounting for surrounding conditions of each tree (precipitation, temperature, insolation, drought indices) were obtained from trees in 194 sites covering the species’ geographic ranges and reflecting local environmental gradients. Conclusions: The GenTree Platform is a new resource for investigating ecological and evolutionary processes in forest trees. The coherent phenotyping and environmental characterization across 12 species in their European ranges allow for a wide range of analyses from forest ecologists, conservationists, and macro-ecologists. Also, the data here presented can be linked to the GenTree Dendroecological collection, the GenTree Leaf Trait collection, and the GenTree Genomic collection presented elsewhere, which together build the largest evolutionary forest ecology data collection available. more...
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- 2021
7. The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe
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Martínez-Sancho, E. (Elisabet), Slámová, L. (Lenka), Morganti, S. (Sandro), Grefen, C. (Claudio), Carvalho, B. (Barbara), Dauphin, B. (Benjamin), Rellstab, C. (Christian), Gugerli, F. (Felix), Opgenoorth, L. (Lars), Heer, K. (Katrin), Knutzen, F. (Florian), von Arx, G. (Georg), Valladares, F. (Fernando), Cavers, S. (Stephen), Fady, B. (Bruno), Alía, R. (Ricardo), Aravanopoulos, F. (Filippos), Avanzi, C. (Camilla), Bagnoli, F. (Francesca), Barbas, E. (Evangelos), Bastien, C. (Catherine), Benavides, R. (Raquel), Bernier, F. (Frédéric), Bodineau, G. (Guillaume), Bastias, C. C. (Cristina C.), Charpentier, J.-P. (Jean-Paul), Climent, J. M. (José M.), Corréard, M. (Marianne), Courdier, F. (Florence), Danusevicius, D. (Darius), Farsakoglou, A.-M. (Anna-Maria), García del Barrio, J. M. (José M.), Gilg, O. (Olivier), González-Martínez, S. C. (Santiago C.), Gray, A. (Alan), Hartleitner, C. (Christoph), Hurel, A. (Agathe), Jouineau, A. (Arnaud), Kärkkäinen, K. (Katri), Kujala, S. T. (Sonja T.), Labriola, M. (Mariaceleste), Lascoux, M. (Martin), Lefebvre, M. (Marlène), Lejeune, V. (Vincent), Le-Provost, G. (Grégoire), Liesebach, M. (Mirko), Malliarou, E. (Ermioni), Mariotte, N. (Nicolas), Matesanz, S. (Silvia), Michotey, C. (Célia), Milesi, P. (Pascal), Myking, T. (Tor), Notivol, E. (Eduardo), Pakull, B. (Birte), Piotti, A. (Andrea), Plomion, C. (Christophe), Pringarbe, M. (Mehdi), Pyhäjärvi, T. (Tanja), Raffin, A. (Annie), Ramírez-Valiente, J. A. (José A.), Ramskogler, K. (Kurt), Robledo-Arnuncio, J. J. (Juan J.), Savolainen, O. (Outi), Schueler, S. (Silvio), Semerikov, V. (Vladimir), Spanu, I. (Ilaria), Thévenet, J. (Jean), Tollefsrud, M. M. (Mari Mette), Turion, N. (Norbert), Veisse, D. (Dominique), Vendramin, G. G. (Giovanni Giuseppe), Villar, M. (Marc), Westin, J. (Johan), Fonti, P. (Patrick), Martínez-Sancho, E. (Elisabet), Slámová, L. (Lenka), Morganti, S. (Sandro), Grefen, C. (Claudio), Carvalho, B. (Barbara), Dauphin, B. (Benjamin), Rellstab, C. (Christian), Gugerli, F. (Felix), Opgenoorth, L. (Lars), Heer, K. (Katrin), Knutzen, F. (Florian), von Arx, G. (Georg), Valladares, F. (Fernando), Cavers, S. (Stephen), Fady, B. (Bruno), Alía, R. (Ricardo), Aravanopoulos, F. (Filippos), Avanzi, C. (Camilla), Bagnoli, F. (Francesca), Barbas, E. (Evangelos), Bastien, C. (Catherine), Benavides, R. (Raquel), Bernier, F. (Frédéric), Bodineau, G. (Guillaume), Bastias, C. C. (Cristina C.), Charpentier, J.-P. (Jean-Paul), Climent, J. M. (José M.), Corréard, M. (Marianne), Courdier, F. (Florence), Danusevicius, D. (Darius), Farsakoglou, A.-M. (Anna-Maria), García del Barrio, J. M. (José M.), Gilg, O. (Olivier), González-Martínez, S. C. (Santiago C.), Gray, A. (Alan), Hartleitner, C. (Christoph), Hurel, A. (Agathe), Jouineau, A. (Arnaud), Kärkkäinen, K. (Katri), Kujala, S. T. (Sonja T.), Labriola, M. (Mariaceleste), Lascoux, M. (Martin), Lefebvre, M. (Marlène), Lejeune, V. (Vincent), Le-Provost, G. (Grégoire), Liesebach, M. (Mirko), Malliarou, E. (Ermioni), Mariotte, N. (Nicolas), Matesanz, S. (Silvia), Michotey, C. (Célia), Milesi, P. (Pascal), Myking, T. (Tor), Notivol, E. (Eduardo), Pakull, B. (Birte), Piotti, A. (Andrea), Plomion, C. (Christophe), Pringarbe, M. (Mehdi), Pyhäjärvi, T. (Tanja), Raffin, A. (Annie), Ramírez-Valiente, J. A. (José A.), Ramskogler, K. (Kurt), Robledo-Arnuncio, J. J. (Juan J.), Savolainen, O. (Outi), Schueler, S. (Silvio), Semerikov, V. (Vladimir), Spanu, I. (Ilaria), Thévenet, J. (Jean), Tollefsrud, M. M. (Mari Mette), Turion, N. (Norbert), Veisse, D. (Dominique), Vendramin, G. G. (Giovanni Giuseppe), Villar, M. (Marc), Westin, J. (Johan), and Fonti, P. (Patrick) more...
- Abstract
The dataset presented here was collected by the GenTree project (EU-Horizon 2020), which aims to improve the use of forest genetic resources across Europe by better understanding how trees adapt to their local environment. This dataset of individual tree-core characteristics including ring-width series and whole-core wood density was collected for seven ecologically and economically important European tree species: silver birch (Betula pendula), European beech (Fagus sylvatica), Norway spruce (Picea abies), European black poplar (Populus nigra), maritime pine (Pinus pinaster), Scots pine (Pinus sylvestris), and sessile oak (Quercus petraea). Tree-ring width measurements were obtained from 3600 trees in 142 populations and whole-core wood density was measured for 3098 trees in 125 populations. This dataset covers most of the geographical and climatic range occupied by the selected species. The potential use of it will be highly valuable for assessing ecological and evolutionary responses to environmental conditions as well as for model development and parameterization, to predict adaptability under climate change scenarios. more...
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- 2020
8. Different response to the UV-stress among Populus alba L. Clones
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Spanu I., Emiliani G., Mara K., Vettori C., Raddi S., Giannini R., and Paffetti D.
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populus - Abstract
To evaluate a possible differential behaviour of 5 white poplar genotypes towards UVB radiation, we studied the association between polymorphism data (SNPs) and expression level on genes (such as chs, comt, and rbcL) putatively related to UVB response. Molecular data were integrated with ecophysiological observation. From the ecophysiological data obtained we observed, in stressed plants, a decrease of the maximum efficiency of the PSII, in particular for 3 clones increasing the hours of UVB treatment. Furthermore an abrupt decrease of the values is already present from the second day of stress. The analysis using qRT PCR for the genes studied, for the leaf tissue of the 5 clones treated for 3, 6 and 12 hours with UVB, showed a different pattern of expression, with a dissimilar response among the clones analyzed towards the stress. Both the ecophysiological and the expression data showed a different response particularly for 3 clones that resulted more sensitive to the treatment than the others. The analysis of the polymorphism of the sequences has instead not allowed the construction of associations with the ecophysiological and expression data for absence of missense mutations. more...
- Published
- 2009
9. WOODIV, a database of occurrences, functional traits, and phylogenetic data for all Euro-Mediterranean trees
- Author
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Monnet, Anne-Christine, Cilleros, Kévin, Médail, Frédéric, Albassatneh, Marwan Cheikh, Arroyo, Juan, Bacchetta, Gianluigi, Bagnoli, Francesca, Barina, Zoltán, Cartereau, Manuel, Casajus, Nicolas, Dimopoulos, Panayotis, Domina, Gianniantonio, Doxa, Aggeliki, Escudero, Marcial, Fady, Bruno, Hampe, Arndt, Matevski, Vlado, Misfud, Stephen, Nikolic, Toni, Pavon, Daniel, Roig, Anne, Barea, Estefania Santos, Spanu, Ilaria, Strid, Arne, Vendramin, Giovanni Giuseppe, Leriche, Agathe, Institut méditerranéen de biodiversité et d'écologie marine et continentale (IMBE), Avignon Université (AU)-Aix Marseille Université (AMU)-Institut de recherche pour le développement [IRD] : UMR237-Centre National de la Recherche Scientifique (CNRS), Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), Department of Plant Biology and Ecology, University of Seville, Department of Life and Environmental Sciences, University of Cagliari, National Research Council (CNR), Institute of Biosciences and BioResources, Department of Botany, Hungarian Natural History Museum, FRB-CESAB, Department of Biology, Division of Plant Biology, Laboratory of Botany, University of Patras, Department of Agriculture, Food and Forest Sciences, University of Palermo, Statistical Learning Lab, Institute of Applied and Computational Mathematics, Foundation for Research and Technology-Hellas (FORTH), Ecologie des Forêts Méditerranéennes (URFM), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Biodiversité, Gènes & Communautés (BioGeCo), Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Macedonian Academy of Sciences and Arts [Skopje, North Macedonia] (MASA), EcoGozo, Regional Development Directorate - Ministry for Gozo, Division of Botany [Zagreb], Department of Biology [Zagreb], Faculty of Science [Zagreb], University of Zagreb-University of Zagreb-Faculty of Science [Zagreb], University of Zagreb-University of Zagreb, Bakkevej 6, 5853, Ørbæk, Denmark, ANR-11-LABX-0061,OTMed,Objectif Terre : Bassin Méditerranéen(2011), Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE), Università degli Studi di Cagliari = University of Cagliari (UniCa), University of Patras, Università degli studi di Palermo - University of Palermo, Monnet A.-C., Cilleros K., Medail F., Albassatneh M.C., Arroyo J., Bacchetta G., Bagnoli F., Barina Z., Cartereau M., Casajus N., Dimopoulos P., Domina G., Doxa A., Escudero M., Fady B., Hampe A., Matevski V., Misfud S., Nikolic T., Pavon D., Roig A., Barea E.S., Spanu I., Strid A., Vendramin G.G., and Leriche A. more...
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Statistics and Probability ,Data Descriptor ,Databases, Factual ,Mediterranean Region ,Conservation biology ,Settore BIO/02 - Botanica Sistematica ,Science ,Biodiversity ,Library and Information Sciences ,Trees ,Computer Science Applications ,Education ,Biogeography ,Settore BIO/03 - Botanica Ambientale E Applicata ,[SDE]Environmental Sciences ,Forest ,Community ecology ,Statistics, Probability and Uncertainty ,Forest ecology ,Ecosystem ,Phylogeny ,Information Systems - Abstract
Trees play a key role in the structure and function of many ecosystems worldwide. In the Mediterranean Basin, forests cover approximately 22% of the total land area hosting a large number of endemics (46 species). Despite its particularities and vulnerability, the biodiversity of Mediterranean trees is not well known at the taxonomic, spatial, functional, and genetic levels required for conservation applications. The WOODIV database fills this gap by providing reliable occurrences, four functional traits (plant height, seed mass, wood density, and specific leaf area), and sequences from three DNA-regions (rbcL, matK, and trnH-psbA), together with modelled occurrences and a phylogeny for all 210 Euro-Mediterranean tree species. We compiled, homogenized, and verified occurrence data from sparse datasets and collated them on an INSPIRE-compliant 10 × 10 km grid. We also gathered functional trait and genetic data, filling existing gaps where possible. The WOODIV database can benefit macroecological studies in the fields of conservation, biogeography, and community ecology., Measurement(s) occurrence • Trait • DNA Technology Type(s) Sampling • digital curation • DNA sequencing assay Sample Characteristic - Organism Viridiplantae • trees Sample Characteristic - Environment forest biome Sample Characteristic - Location Mediterranean Region • Europe Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.13553519 more...
- Published
- 2021
- Full Text
- View/download PDF
10. Macro- and micro-geographic genetic variation in early fitness traits in populations of maritime pine (Pinus pinaster Ait.).
- Author
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Solé-Medina A, Hurel A, Avanzi C, González-Martinez SC, Vendramin GG, Bagnoli F, Piotti A, Marchi M, Spanu I, Robledo-Arnuncio JJ, and Ramírez-Valiente JA
- Abstract
Background and Aims: Assessing adaptive genetic variation and its spatial distribution is crucial to conserve forest genetic resources and manage species' adaptive potential. Macro-environmental gradients commonly exert divergent selective pressures that enhance adaptive genetic divergence among populations. Steep micro-environmental variation might also result in adaptive divergence at finer spatial scales, even under high gene flow, but it is unclear how often this is the case. Here, we assess genetic variation in early fitness traits among distant and nearby maritime pine (Pinus pinaster Ait.) populations, to investigate climatic factors associated with trait divergence, and to examine trait integration during seedling establishment., Methods: Open pollinated seeds were collected from seven population pairs across the European species distribution, with paired populations spatially close (between <1 km up to 21 km) but environmentally divergent. Seeds were sown in semi-natural conditions at three environmentally contrasting sites, where we monitored seedling emergence, growth and survival., Key Results: At large spatial scales, we found significant genetic divergence among populations in all studied traits, with certain traits exhibiting association with temperature and precipitation gradients. Significant trait divergence was also detected between pairs of nearby populations. Besides, we found consistent trait correlations across experimental sites, notably heavier seeds and earlier seedling emergence were both associated with higher seedling survival and fitness over two years in all experimental conditions., Conclusions: We identified mean annual temperature and precipitation seasonality as potential drivers of P. pinaster population divergence in the studied early-life traits. Populations genetically diverge also at local spatial scales, potentially suggesting that divergent natural selection can override gene flow along local-scale ecological gradients. These results suggest the species exhibits substantial adaptive potential that has allowed it to survive and evolve under contrasting environmental conditions., (© The Author(s) 2024. Published by Oxford University Press on behalf of the Annals of Botany Company.) more...
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- 2024
- Full Text
- View/download PDF
11. Imprints of selection in peripheral and ecologically marginal central-eastern European Scots pine populations.
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Gy Tóth E, Bagnoli F, Vendramin GG, György Z, Spanu I, and Höhn M
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- Droughts, Europe, Europe, Eastern, Gene Frequency, Genes, Plant, Genetics, Population, Haplotypes, Pinus sylvestris physiology, Polymorphism, Single Nucleotide, Genetic Variation, Pinus sylvestris genetics, Selection, Genetic
- Abstract
Knowledge of the molecular mechanisms underlying the stress response in plants is essential to understand evolutionary processes that result in long-term persistence of populations. Populations inhabiting marginal ecological conditions at the distribution range periphery may have preserved imprints of natural selection that have shaped functional genetic variation of the species. Our aim was to evaluate the extent of selection processes in the extremely fragmented, peripheral and isolated populations of Scots pine in central-eastern Europe. Autochthonous populations of the Carpathian Mts. and the Pannonian Basin were sampled and drought stress-related candidate genes were re-sequenced. Neutrality tests and outlier detection approaches were applied to infer the effect and direction of selection. Populations retained high genetic diversity by preserving a high number of alleles and haplotypes, many of them being population specific. Neutrality tests and outlier detection highlighted nucleotide positions that are under divergent selection and may be involved in local adaptation. The detected genetic pattern confirms that natural selection has played an important role in shaping modern-day genetic variation in marginal Scots pine populations, allowing for the long-term persistence of populations. Selection detected at functional regions possibly acts to maintain diversity and counteract the effect of genetic erosion., (Copyright © 2021 Elsevier B.V. All rights reserved.) more...
- Published
- 2021
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12. Author Correction: WOODIV, a database of occurrences, functional traits, and phylogenetic data for all Euro-Mediterranean trees.
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Monnet AC, Cilleros K, Médail F, Albassatneh MC, Arroyo J, Bacchetta G, Bagnoli F, Barina Z, Cartereau M, Casajus N, Dimopoulos P, Domina G, Doxa A, Escudero M, Fady B, Hampe A, Matevski V, Misfud S, Nikolic T, Pavon D, Roig A, Barea ES, Spanu I, Strid A, Vendramin GG, and Leriche A more...
- Published
- 2021
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13. The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species.
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Opgenoorth L, Dauphin B, Benavides R, Heer K, Alizoti P, Martínez-Sancho E, Alía R, Ambrosio O, Audrey A, Auñón F, Avanzi C, Avramidou E, Bagnoli F, Barbas E, Bastias CC, Bastien C, Ballesteros E, Beffa G, Bernier F, Bignalet H, Bodineau G, Bouic D, Brodbeck S, Brunetto W, Buchovska J, Buy M, Cabanillas-Saldaña AM, Carvalho B, Cheval N, Climent JM, Correard M, Cremer E, Danusevičius D, Del Caño F, Denou JL, di Gerardi N, Dokhelar B, Ducousso A, Eskild Nilsen A, Farsakoglou AM, Fonti P, Ganopoulos I, García Del Barrio JM, Gilg O, González-Martínez SC, Graf R, Gray A, Grivet D, Gugerli F, Hartleitner C, Hollenbach E, Hurel A, Issehut B, Jean F, Jorge V, Jouineau A, Kappner JP, Kärkkäinen K, Kesälahti R, Knutzen F, Kujala ST, Kumpula TA, Labriola M, Lalanne C, Lambertz J, Lascoux M, Lejeune V, Le-Provost G, Levillain J, Liesebach M, López-Quiroga D, Meier B, Malliarou E, Marchon J, Mariotte N, Mas A, Matesanz S, Meischner H, Michotey C, Milesi P, Morganti S, Nievergelt D, Notivol E, Ostreng G, Pakull B, Perry A, Piotti A, Plomion C, Poinot N, Pringarbe M, Puzos L, Pyhäjärvi T, Raffin A, Ramírez-Valiente JA, Rellstab C, Remi D, Richter S, Robledo-Arnuncio JJ, San Segundo S, Savolainen O, Schueler S, Schneck V, Scotti I, Semerikov V, Slámová L, Sønstebø JH, Spanu I, Thevenet J, Tollefsrud MM, Turion N, Vendramin GG, Villar M, von Arx G, Westin J, Fady B, Myking T, Valladares F, Aravanopoulos FA, and Cavers S more...
- Subjects
- Forests, Trees, Fagus, Picea, Pinus sylvestris
- Abstract
Background: Progress in the field of evolutionary forest ecology has been hampered by the huge challenge of phenotyping trees across their ranges in their natural environments, and the limitation in high-resolution environmental information., Findings: The GenTree Platform contains phenotypic and environmental data from 4,959 trees from 12 ecologically and economically important European forest tree species: Abies alba Mill. (silver fir), Betula pendula Roth. (silver birch), Fagus sylvatica L. (European beech), Picea abies (L.) H. Karst (Norway spruce), Pinus cembra L. (Swiss stone pine), Pinus halepensis Mill. (Aleppo pine), Pinus nigra Arnold (European black pine), Pinus pinaster Aiton (maritime pine), Pinus sylvestris L. (Scots pine), Populus nigra L. (European black poplar), Taxus baccata L. (English yew), and Quercus petraea (Matt.) Liebl. (sessile oak). Phenotypic (height, diameter at breast height, crown size, bark thickness, biomass, straightness, forking, branch angle, fructification), regeneration, environmental in situ measurements (soil depth, vegetation cover, competition indices), and environmental modeling data extracted by using bilinear interpolation accounting for surrounding conditions of each tree (precipitation, temperature, insolation, drought indices) were obtained from trees in 194 sites covering the species' geographic ranges and reflecting local environmental gradients., Conclusion: The GenTree Platform is a new resource for investigating ecological and evolutionary processes in forest trees. The coherent phenotyping and environmental characterization across 12 species in their European ranges allow for a wide range of analyses from forest ecologists, conservationists, and macro-ecologists. Also, the data here presented can be linked to the GenTree Dendroecological collection, the GenTree Leaf Trait collection, and the GenTree Genomic collection presented elsewhere, which together build the largest evolutionary forest ecology data collection available., (© The Author(s) 2021. Published by Oxford University Press GigaScience.) more...
- Published
- 2021
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14. Author Correction: The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe.
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Martínez-Sancho E, Slámová L, Morganti S, Grefen C, Carvalho B, Dauphin B, Rellstab C, Gugerli F, Opgenoorth L, Heer K, Knutzen F, von Arx G, Valladares F, Cavers S, Fady B, Alía R, Aravanopoulos F, Avanzi C, Bagnoli F, Barbas E, Bastien C, Benavides R, Bernier F, Bodineau G, Bastias CC, Charpentier JP, Climent JM, Corréard M, Courdier F, Danusevicius D, Farsakoglou AM, García Del Barrio JM, Gilg O, González-Martínez SC, Gray A, Hartleitner C, Hurel A, Jouineau A, Kärkkäinen K, Kujala ST, Labriola M, Lascoux M, Lefebvre M, Lejeune V, Le-Provost G, Liesebach M, Malliarou E, Mariotte N, Matesanz S, Michotey C, Milesi P, Myking T, Notivol E, Pakull B, Piotti A, Plomion C, Pringarbe M, Pyhäjärvi T, Raffin A, Ramírez-Valiente JA, Ramskogler K, Robledo-Arnuncio JJ, Savolainen O, Schueler S, Semerikov V, Spanu I, Thévenet J, Tollefsrud MM, Turion N, Veisse D, Vendramin GG, Villar M, Westin J, and Fonti P more...
- Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
- Published
- 2020
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15. The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe.
- Author
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Martínez-Sancho E, Slámová L, Morganti S, Grefen C, Carvalho B, Dauphin B, Rellstab C, Gugerli F, Opgenoorth L, Heer K, Knutzen F, von Arx G, Valladares F, Cavers S, Fady B, Alía R, Aravanopoulos F, Avanzi C, Bagnoli F, Barbas E, Bastien C, Benavides R, Bernier F, Bodineau G, Bastias CC, Charpentier JP, Climent JM, Corréard M, Courdier F, Danusevicius D, Farsakoglou AM, Del Barrio JMG, Gilg O, González-Martínez SC, Gray A, Hartleitner C, Hurel A, Jouineau A, Kärkkäinen K, Kujala ST, Labriola M, Lascoux M, Lefebvre M, Lejeune V, Le-Provost G, Liesebach M, Malliarou E, Mariotte N, Matesanz S, Michotey C, Milesi P, Myking T, Notivol E, Pakull B, Piotti A, Plomion C, Pringarbe M, Pyhäjärvi T, Raffin A, Ramírez-Valiente JA, Ramskogler K, Robledo-Arnuncio JJ, Savolainen O, Schueler S, Semerikov V, Spanu I, Thévenet J, Mette Tollefsrud M, Turion N, Veisse D, Vendramin GG, Villar M, Westin J, and Fonti P more...
- Subjects
- Betula, Climate Change, Europe, Fagus, Forests, Picea, Pinus, Populus, Quercus, Trees growth & development, Wood
- Abstract
The dataset presented here was collected by the GenTree project (EU-Horizon 2020), which aims to improve the use of forest genetic resources across Europe by better understanding how trees adapt to their local environment. This dataset of individual tree-core characteristics including ring-width series and whole-core wood density was collected for seven ecologically and economically important European tree species: silver birch (Betula pendula), European beech (Fagus sylvatica), Norway spruce (Picea abies), European black poplar (Populus nigra), maritime pine (Pinus pinaster), Scots pine (Pinus sylvestris), and sessile oak (Quercus petraea). Tree-ring width measurements were obtained from 3600 trees in 142 populations and whole-core wood density was measured for 3098 trees in 125 populations. This dataset covers most of the geographical and climatic range occupied by the selected species. The potential use of it will be highly valuable for assessing ecological and evolutionary responses to environmental conditions as well as for model development and parameterization, to predict adaptability under climate change scenarios. more...
- Published
- 2020
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16. Disentangling the effects of spatial proximity and genetic similarity on individual growth performances in Norway spruce natural populations.
- Author
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Avanzi C, Piermattei A, Piotti A, Büntgen U, Heer K, Opgenoorth L, Spanu I, Urbinati C, Vendramin GG, and Leonardi S
- Subjects
- Adaptation, Physiological, Altitude, Climate, Environmental Monitoring, Europe, Genetics, Population, Microsatellite Repeats genetics, Models, Biological, Picea genetics, Picea growth & development
- Abstract
Cambial growth is a phenotypic trait influenced by various physiological processes, numerous biotic and abiotic drivers, as well as by the genetic background. By archiving the outcome of such complex interplay, tree-rings are an exceptional resource for addressing individual long-term growth responses to changing environments and climate. Disentangling the effects of the different drivers of tree growth, however, remains challenging because of the lack of multidisciplinary data. Here, we combine individual dendrochronological, genetic and spatial data to assess the relative importance of genetic similarity and spatial proximity on Norway spruce (Picea abies (L.) Karst.) growth performances. We intensively sampled five plots from two populations in southern and central Europe, characterizing a total of 482 trees. A two-step analytical framework was developed. First, the effects of climate and tree age on tree-ring width (TRW) were estimated for each individual using a random slope linear mixed-effects model. Individual parameters were then tested against genetic and spatial variables by Mantel tests, partial redundancy analyses and variance partitioning. Our modelling approach successfully captured a large fraction of variance in TRW (conditional R
2 values up to 0.94) which was largely embedded in inter-individual differences. All statistical approaches consistently showed that genetic similarity was not related to variation in the individual parameters describing growth responses. In contrast, up to 29% of the variance of individual parameters was accounted by spatial variables, revealing that microenvironmental features are more relevant than genetic similarity in determining similar growth patterns. Our study highlights both the advantages of modelling dendrochronological data at the individual level and the relevance of microenvironmental variation on individual growth patterns. These two aspects should be carefully considered in future multidisciplinary studies on growth dynamics in natural populations., (Copyright © 2018 Elsevier B.V. All rights reserved.) more...- Published
- 2019
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17. Left ventricular performance during acute rate control in atrial fibrillation: the importance of heart rate and agent used.
- Author
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Pinter A, Dorian P, Paquette M, Ng A, Burns M, Spanu I, Freeman M, Korley V, and Newman D
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- Aged, Anti-Arrhythmia Agents administration & dosage, Blood Pressure drug effects, Cardiac Output drug effects, Digoxin administration & dosage, Diltiazem administration & dosage, Female, Humans, Injections, Intravenous, Male, Middle Aged, Single-Blind Method, Stroke Volume drug effects, Time Factors, Anti-Arrhythmia Agents therapeutic use, Atrial Fibrillation drug therapy, Digoxin therapeutic use, Diltiazem therapeutic use, Heart Rate drug effects
- Abstract
Background: The relation between heart rate and left ventricular function during rate control in atrial fibrillation is incompletely understood., Methods: Twenty-four patients (age 67 +/- 11 years) with symptomatic recent onset rapid atrial fibrillation and rapid ventricular rate (> 110 bpm) were randomly assigned to receive either intravenous digoxin (13 mcg/kg) or intravenous diltiazem (0.25 mg/kg bolus plus a maintenance infusion). A portable radionuclide detector was used to collect validated measures of relative left ventricular volumes, along with heart rate data, every 15 seconds for 6 hours., Results: Heart rate decreased significantly at 15 minutes and 180 minutes in the diltiazem group (from 133 +/- 18 bpm to 111 +/- 26 bpm [P <.01] to 94 +/- 24 bpm [P <.001]) but not in the digoxin group (from 129 +/- 18 bpm to 126 +/- 17 bpm [P = NS] to 118 +/- 15 bpm [P = NS]). Left ventricular ejection fraction improved in both groups to a similar extent (from 39 +/- 10% to 50 +/- 8%, [P <.05] after diltiazem, and from 38 +/- 8% to 52 +/- 11% [P <.05] after digoxin at baseline vs 180 minutes, respectively). The ejection fraction vs heart rate slope was steeper in the digoxin group than in the diltiazem group (-0.34 +/- 0.18 vs -0.16 +/- 0.17, P =.048) indicating a more pronounced improvement in ejection fraction per unit decrease in heart rate., Conclusion: In patients with acute atrial fibrillation, digoxin led to similar improvements in ejection fraction compared to diltiazem despite a slower and less potent heart rate slowing. more...
- Published
- 2003
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18. Intraoperative graft patency verification: should you trust your fingertips?
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D'Ancona G, Karamanoukian HL, Ricci M, Schmid S, Spanu I, Apfel L, Bergsland J, and Salerno TA
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- Fingers, Graft Survival, Humans, Monitoring, Intraoperative methods, Sensitivity and Specificity, Coronary Artery Bypass methods, Coronary Disease diagnostic imaging, Coronary Disease surgery, Ultrasonography, Doppler, Vascular Patency physiology
- Published
- 2000
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