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WOODIV, a database of occurrences, functional traits, and phylogenetic data for all Euro-Mediterranean trees

Authors :
Monnet, Anne-Christine
Cilleros, Kévin
Médail, Frédéric
Albassatneh, Marwan Cheikh
Arroyo, Juan
Bacchetta, Gianluigi
Bagnoli, Francesca
Barina, Zoltán
Cartereau, Manuel
Casajus, Nicolas
Dimopoulos, Panayotis
Domina, Gianniantonio
Doxa, Aggeliki
Escudero, Marcial
Fady, Bruno
Hampe, Arndt
Matevski, Vlado
Misfud, Stephen
Nikolic, Toni
Pavon, Daniel
Roig, Anne
Barea, Estefania Santos
Spanu, Ilaria
Strid, Arne
Vendramin, Giovanni Giuseppe
Leriche, Agathe
Institut méditerranéen de biodiversité et d'écologie marine et continentale (IMBE)
Avignon Université (AU)-Aix Marseille Université (AMU)-Institut de recherche pour le développement [IRD] : UMR237-Centre National de la Recherche Scientifique (CNRS)
Institut de Systématique, Evolution, Biodiversité (ISYEB )
Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE)
Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA)
Department of Plant Biology and Ecology, University of Seville
Department of Life and Environmental Sciences
University of Cagliari
National Research Council (CNR), Institute of Biosciences and BioResources
Department of Botany, Hungarian Natural History Museum
FRB-CESAB
Department of Biology, Division of Plant Biology, Laboratory of Botany, University of Patras
Department of Agriculture, Food and Forest Sciences, University of Palermo
Statistical Learning Lab, Institute of Applied and Computational Mathematics, Foundation for Research and Technology-Hellas (FORTH)
Ecologie des Forêts Méditerranéennes (URFM)
Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Biodiversité, Gènes & Communautés (BioGeCo)
Université de Bordeaux (UB)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Macedonian Academy of Sciences and Arts [Skopje, North Macedonia] (MASA)
EcoGozo, Regional Development Directorate - Ministry for Gozo
Division of Botany [Zagreb]
Department of Biology [Zagreb]
Faculty of Science [Zagreb]
University of Zagreb-University of Zagreb-Faculty of Science [Zagreb]
University of Zagreb-University of Zagreb
Bakkevej 6, 5853, Ørbæk, Denmark
ANR-11-LABX-0061,OTMed,Objectif Terre : Bassin Méditerranéen(2011)
Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE)
Università degli Studi di Cagliari = University of Cagliari (UniCa)
University of Patras
Università degli studi di Palermo - University of Palermo
Monnet A.-C.
Cilleros K.
Medail F.
Albassatneh M.C.
Arroyo J.
Bacchetta G.
Bagnoli F.
Barina Z.
Cartereau M.
Casajus N.
Dimopoulos P.
Domina G.
Doxa A.
Escudero M.
Fady B.
Hampe A.
Matevski V.
Misfud S.
Nikolic T.
Pavon D.
Roig A.
Barea E.S.
Spanu I.
Strid A.
Vendramin G.G.
Leriche A.
Source :
Scientific Data, Scientific Data, Nature Publishing Group, 2021, 8 (89), pp.1-11. ⟨10.1038/s41597-021-00873-3⟩, Scientific Data, Vol 8, Iss 1, Pp 1-11 (2021), Scientific Data, 2021, 8 (89), pp.1-11. ⟨10.1038/s41597-021-00873-3⟩
Publication Year :
2021
Publisher :
Nature Publishing Group, 2021.

Abstract

Trees play a key role in the structure and function of many ecosystems worldwide. In the Mediterranean Basin, forests cover approximately 22% of the total land area hosting a large number of endemics (46 species). Despite its particularities and vulnerability, the biodiversity of Mediterranean trees is not well known at the taxonomic, spatial, functional, and genetic levels required for conservation applications. The WOODIV database fills this gap by providing reliable occurrences, four functional traits (plant height, seed mass, wood density, and specific leaf area), and sequences from three DNA-regions (rbcL, matK, and trnH-psbA), together with modelled occurrences and a phylogeny for all 210 Euro-Mediterranean tree species. We compiled, homogenized, and verified occurrence data from sparse datasets and collated them on an INSPIRE-compliant 10 × 10 km grid. We also gathered functional trait and genetic data, filling existing gaps where possible. The WOODIV database can benefit macroecological studies in the fields of conservation, biogeography, and community ecology.<br />Measurement(s) occurrence • Trait • DNA Technology Type(s) Sampling • digital curation • DNA sequencing assay Sample Characteristic - Organism Viridiplantae • trees Sample Characteristic - Environment forest biome Sample Characteristic - Location Mediterranean Region • Europe Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.13553519

Details

Language :
English
ISSN :
20524463
Database :
OpenAIRE
Journal :
Scientific Data, Scientific Data, Nature Publishing Group, 2021, 8 (89), pp.1-11. ⟨10.1038/s41597-021-00873-3⟩, Scientific Data, Vol 8, Iss 1, Pp 1-11 (2021), Scientific Data, 2021, 8 (89), pp.1-11. ⟨10.1038/s41597-021-00873-3⟩
Accession number :
edsair.pmid.dedup....84283ae13409a7d62d955050601f8f9c
Full Text :
https://doi.org/10.1038/s41597-021-00873-3⟩