7 results on '"Spaide T"'
Search Results
2. Estimating Uncertainty of Geographic Atrophy Segmentations with Bayesian Deep Learning.
- Author
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Spaide T, Rajesh AE, Gim N, Blazes M, Lee CS, Macivannan N, Lee G, Lewis W, Salehi A, de Sisternes L, Herrera G, Shen M, Gregori G, Rosenfeld PJ, Pramil V, Waheed N, Wu Y, Zhang Q, and Lee AY
- Abstract
Purpose: To apply methods for quantifying uncertainty of deep learning segmentation of geographic atrophy (GA)., Design: Retrospective analysis of OCT images and model comparison., Participants: One hundred twenty-six eyes from 87 participants with GA in the SWAGGER cohort of the Nonexudative Age-Related Macular Degeneration Imaged with Swept-Source OCT (SS-OCT) study., Methods: The manual segmentations of GA lesions were conducted on structural subretinal pigment epithelium en face images from the SS-OCT images. Models were developed for 2 approximate Bayesian deep learning techniques, Monte Carlo dropout and ensemble, to assess the uncertainty of GA semantic segmentation and compared to a traditional deep learning model., Main Outcome Measures: Model performance (Dice score) was compared. Uncertainty was calculated using the formula for Shannon Entropy., Results: The output of both Bayesian technique models showed a greater number of pixels with high entropy than the standard model. Dice scores for the Monte Carlo dropout method (0.90, 95% confidence interval 0.87-0.93) and the ensemble method (0.88, 95% confidence interval 0.85-0.91) were significantly higher ( P < 0.001) than for the traditional model (0.82, 95% confidence interval 0.78-0.86)., Conclusions: Quantifying the uncertainty in a prediction of GA may improve trustworthiness of the models and aid clinicians in decision-making. The Bayesian deep learning techniques generated pixel-wise estimates of model uncertainty for segmentation, while also improving model performance compared with traditionally trained deep learning models., Financial Disclosures: Proprietary or commercial disclosure may be found in the Footnotes and Disclosures at the end of this article., (© 2024 by the American Academy of Ophthalmology.)
- Published
- 2024
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3. Geographic Atrophy Segmentation Using Multimodal Deep Learning.
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Spaide T, Jiang J, Patil J, Anegondi N, Steffen V, Kawczynski MG, Newton EM, Rabe C, Gao SS, Lee AY, Holz FG, Sadda S, Schmitz-Valckenberg S, and Ferrara D
- Subjects
- Humans, Cross-Sectional Studies, Fundus Oculi, Retrospective Studies, Clinical Studies as Topic, Deep Learning, Geographic Atrophy diagnostic imaging
- Abstract
Purpose: To examine deep learning (DL)-based methods for accurate segmentation of geographic atrophy (GA) lesions using fundus autofluorescence (FAF) and near-infrared (NIR) images., Methods: This retrospective analysis utilized imaging data from study eyes of patients enrolled in Proxima A and B (NCT02479386; NCT02399072) natural history studies of GA. Two multimodal DL networks (UNet and YNet) were used to automatically segment GA lesions on FAF; segmentation accuracy was compared with annotations by experienced graders. The training data set comprised 940 image pairs (FAF and NIR) from 183 patients in Proxima B; the test data set comprised 497 image pairs from 154 patients in Proxima A. Dice coefficient scores, Bland-Altman plots, and Pearson correlation coefficient (r) were used to assess performance., Results: On the test set, Dice scores for the DL network to grader comparison ranged from 0.89 to 0.92 for screening visit; Dice score between graders was 0.94. GA lesion area correlations (r) for YNet versus grader, UNet versus grader, and between graders were 0.981, 0.959, and 0.995, respectively. Longitudinal GA lesion area enlargement correlations (r) for screening to 12 months (n = 53) were lower (0.741, 0.622, and 0.890, respectively) compared with the cross-sectional results at screening. Longitudinal correlations (r) from screening to 6 months (n = 77) were even lower (0.294, 0.248, and 0.686, respectively)., Conclusions: Multimodal DL networks to segment GA lesions can produce accurate results comparable with expert graders., Translational Relevance: DL-based tools may support efficient and individualized assessment of patients with GA in clinical research and practice.
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- 2023
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4. PeriorbitAI: Artificial Intelligence Automation of Eyelid and Periorbital Measurements.
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Van Brummen A, Owen JP, Spaide T, Froines C, Lu R, Lacy M, Blazes M, Li E, Lee CS, Lee AY, and Zhang M
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- Automation, Face, Humans, Prospective Studies, Artificial Intelligence, Eyelids diagnostic imaging
- Abstract
Purpose: To develop a deep learning semantic segmentation network to automate the assessment of 8 periorbital measurements DESIGN: Development and validation of an artificial intelligence (AI) segmentation algorithm METHODS: A total of 418 photographs of periorbital areas were used to train a deep learning semantic segmentation model to segment iris, aperture, and brow areas. These data were used to develop a post-processing algorithm that measured margin reflex distance (MRD) 1 and 2, medial canthal height (MCH), lateral canthal height (LCH), medial brow height (MBH), lateral brow height (LBH), medial intercanthal distance (MID), and lateral intercanthal distance (LID). The algorithm validity was evaluated on a prospective hold-out test set against 3 graders. The main outcome measures were dice coefficient, mean absolute difference, intraclass correlation coefficient, and Bland-Altman analysis. A smartphone video was also segmented and evaluated as proof of concept., Results: The AI algorithm performed in close agreement with all human graders, with a mean absolute difference of 0.5 mm for MRD1, MRD2, LCH, and MCH. The mean absolute difference between graders is approximately 1.5-2 mm for LBH and MBH and approximately 2-4 mm for MID and LID. The 95% confidence intervals for all graders overlapped in most cases, demonstrating that the algorithm performs similarly to human graders. The segmentation of a smartphone video demonstrated that MRD1 can be dynamically measured., Conclusions: We present, to our knowledge, the first open-sourced, artificial intelligence system capable of automating static and dynamic periorbital measurements. A fully automated tool stands to transform the delivery of clinical care and quantification of surgical outcomes., (Copyright © 2021. Published by Elsevier Inc.)
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- 2021
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5. Exploring a Structural Basis for Delayed Rod-Mediated Dark Adaptation in Age-Related Macular Degeneration Via Deep Learning.
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Lee AY, Lee CS, Blazes MS, Owen JP, Bagdasarova Y, Wu Y, Spaide T, Yanagihara RT, Kihara Y, Clark ME, Kwon M, Owsley C, and Curcio CA
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- Dark Adaptation, Humans, Visual Acuity, Deep Learning, Macula Lutea diagnostic imaging, Macular Degeneration diagnostic imaging
- Abstract
Purpose: Delayed rod-mediated dark adaptation (RMDA) is a functional biomarker for incipient age-related macular degeneration (AMD). We used anatomically restricted spectral domain optical coherence tomography (SD-OCT) imaging data to localize de novo imaging features associated with and to test hypotheses about delayed RMDA., Methods: Rod intercept time (RIT) was measured in participants with and without AMD at 5 degrees from the fovea, and macular SD-OCT images were obtained. A deep learning model was trained with anatomically restricted information using a single representative B-scan through the fovea of each eye. Mean-occlusion masking was utilized to isolate the relevant imaging features., Results: The model identified hyporeflective outer retinal bands on macular SD-OCT associated with delayed RMDA. The validation mean standard error (MSE) registered to the foveal B-scan localized the lowest error to 0.5 mm temporal to the fovea center, within an overall low-error region across the rod-free zone and adjoining parafovea. Mean absolute error (MAE) on the test set was 4.71 minutes (8.8% of the dynamic range)., Conclusions: We report a novel framework for imaging biomarker discovery using deep learning and demonstrate its ability to identify and localize a previously undescribed biomarker in retinal imaging. The hyporeflective outer retinal bands in central macula on SD-OCT demonstrate a structural basis for dysfunctional rod vision that correlates to published histopathologic findings., Translational Relevance: This agnostic approach to anatomic biomarker discovery strengthens the rationale for RMDA as an outcome measure in early AMD clinical trials, and also expands the utility of deep learning beyond automated diagnosis to fundamental discovery., Competing Interests: Disclosure: A.Y. Lee, US Food and Drug Administration (E), grants from Santen (F), Carl Zeiss Meditec (F), and Novartis (F), personal fees from Genentech (R), Topcon (R), and Verana Health (R), outside of the submitted work. This article does not reflect the opinions of the Food and Drug Administration; C.S. Lee, None; M.S. Blazes, None; J.P. Owen, None; Y. Bagdasarova, None; Y. Wu, None; T. Spaide, None; R.T. Yanagihara, None; Y. Kihara, None; M.E. Clark, None; M.Y. Kwon, None; C. Owsley, is an inventor on the device used to measure dark adaptation in this study; C.A. Curcio, is a stockholder in MacRegen Inc., (Copyright 2020 The Authors.)
- Published
- 2020
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6. Using Deep Learning to Automate Goldmann Applanation Tonometry Readings.
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Spaide T, Wu Y, Yanagihara RT, Feng S, Ghabra O, Yi JS, Chen PP, Moses F, Lee AY, and Wen JC
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- Aged, Cross-Sectional Studies, Female, Glaucoma physiopathology, Humans, Male, Middle Aged, Prospective Studies, ROC Curve, Reproducibility of Results, Deep Learning, Glaucoma diagnosis, Intraocular Pressure physiology, Tonometry, Ocular methods
- Abstract
Purpose: To develop an objective and automated method for measuring intraocular pressure using deep learning and fixed-force Goldmann applanation tonometry (GAT) techniques., Design: Prospective cross-sectional study., Participants: Patients from an academic glaucoma practice., Methods: Intraocular pressure was estimated by analyzing videos recorded using a standard slit-lamp microscope and fixed-force GAT. Video frames were labeled to identify the outline of the reference tonometer and the applanation mires. A deep learning model was trained to localize and segment the tonometer and mires. Intraocular pressure values were calculated from the deep learning-predicted tonometer and mire diameters using the Imbert-Fick formula. A separate test set was collected prospectively in which standard and automated GAT measurements were collected in random order by 2 independent masked observers to assess the deep learning model as well as interobserver variability., Main Outcome Measures: Intraocular pressure measurements between standard and automated methods were compared., Results: Two hundred sixty-three eyes of 135 patients were included in the training and validation videos. For the test set, 50 eyes from 25 participants were included. Each eye was measured by 2 observers, resulting in 100 videos. Within the test set, the mean difference between automated and standard GAT results was -0.9 mmHg (95% limits of agreement [LoA], -5.4 to 3.6 mmHg). Mean difference between the 2 observers using standard GAT was 0.09 mmHg (LoA,-3.8 to 4.0 mmHg). Mean difference between the 2 observers using automated GAT videos was -0.3 mmHg (LoA, -4.1 to 3.5 mmHg). The coefficients of repeatability for automated and standard GAT were 3.8 and 3.9 mmHg, respectively. The bias for even-numbered measurements was reduced when using automated GAT., Conclusions: Preliminary measurements using deep learning to automate GAT demonstrate results comparable with those of standard GAT. Automated GAT has the potential to improve on our current GAT measurement standards significantly by reducing bias and improving repeatability. In addition, ocular pulse amplitudes could be observed using this technique., (Copyright © 2020 American Academy of Ophthalmology. All rights reserved.)
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- 2020
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7. Development and validation of a machine learning, smartphone-based tonometer.
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Wu Y, Luttrell I, Feng S, Chen PP, Spaide T, Lee AY, and Wen JC
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- Adult, Aged, Female, Glaucoma, Angle-Closure physiopathology, Glaucoma, Open-Angle physiopathology, Humans, Low Tension Glaucoma physiopathology, Male, Middle Aged, Ocular Hypertension diagnosis, Pilot Projects, Reproducibility of Results, Glaucoma, Angle-Closure diagnosis, Glaucoma, Open-Angle diagnosis, Intraocular Pressure physiology, Low Tension Glaucoma diagnosis, Machine Learning, Smartphone instrumentation, Tonometry, Ocular instrumentation
- Abstract
Background/aims: To compare intraocular pressure (IOP) measurements using a prototype smartphone tonometer with other tonometers used in clinical practice., Methods: Patients from an academic glaucoma practice were recruited. The smartphone tonometer uses fixed force applanation and in conjunction with a machine-learning computer algorithm is able to calculate the IOP. IOP was also measured using Goldmann applanation tonometry (GAT) in all subjects. A subset of patients were also measured using ICare, pneumotonometry (upright and supine positions) and Tono-Pen (upright and supine positions) and the results were compared., Results: 92 eyes of 81 subjects were successfully measured. The mean difference (in mm Hg) for IOP measurements of the smartphone tonometer versus other devices was +0.24 mm Hg for GAT, -1.39 mm Hg for ICare, -3.71 mm Hg for pneumotonometry and -1.30 mm Hg for Tono-Pen. The 95% limits of agreement for the smartphone tonometer versus other devices was -4.35 to 4.83 mm Hg for GAT, -6.48 to 3.70 mm Hg for ICare, -7.66 to -0.15 mm Hg for pneumotonometry and -5.72 to 3.12 mm Hg for Tono-Pen. Overall, the smartphone tonometer results correlated best with GAT (R
2 =0.67, p<0.001). Of the 92 videos, 90 (97.8%) were within ±5 mm Hg of GAT and 58 (63.0%) were within ±2 mm Hg of GAT., Conclusions: Preliminary IOP measurements using a prototype smartphone-based tonometer was grossly equivalent to the reference standard., Competing Interests: Competing interests: AYL has received grant support from Novartis and Carl Zeiss Meditec. AYL has received honoraria from Topcon and Verana Health. JCW has a patent pending US20170215728A1. None of the other authors have any competing interests related to this study., (© Author(s) (or their employer(s)) 2019. No commercial re-use. See rights and permissions. Published by BMJ.)- Published
- 2020
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