362 results on '"Souza RA"'
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2. LEUCEMIA AGUDA PROMIELOCÍTICA JUVENIL: RELATO DE CASO COM A INTEGRAÇÃO ENTRE O ESTUDO CITOMORFOLÓGICO, IMUNOFENOTÍPICO, CITOGENÉTICO E MOLECULAR
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Belline, P, primary, Cunha, FGP, additional, Gabur-Junior, N, additional, and Souza, RA, additional
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- 2023
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3. Mucocutaneous diseases with manifestations in the head and neck region: 24 years of experience in a Dermatology service
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Silva, WR., primary, de Lima-Souza, RA., additional, Silva, LP., additional, Filho, LG., additional, Montenegro, LT., additional, and Iglesias, DP., additional
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- 2023
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4. INTERNAÇÕES HOSPITALARES POR ANEMIA FERROPRIVA E OUTRAS ANEMIAS EM PACIENTES PEDIÁTRICOS DE 1 A 9 ANOS DE IDADE: UMA ANÁLISE EPIDEMIOLÓGICA DOS ÚLTIMOS 5 ANOS
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Salvoni, JF, Jorge, SZ, Almeida, RC, Mistro, VB, Alecrin, ABA, Luccas, FNS, Souza, DR, Eira, ML, Souza, RA, and Kurahashi, FS
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- 2024
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5. RELATO DE CASO: LEUCEMIA PROMIELOCÍTICA AGUDA COM TRANSLOCAÇÃO T(11;17): ZBTB16/RARA E SUA APRESENTAÇÃO LABORATORIAL.
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Rodrigues, RFC, Silva, MRMB, Souza, JA, Belline, P, Santos, SFD, Cunha, FGP, Souza, RA, Júnior, NG, Herculani, JECC, and Araujo, RMS
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- 2024
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6. Three dimensional typological studies using scanning electron microscopy for characterization ofTermitomycespellets obtained from submerged growth conditions
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de Souza, RA, primary and Kamat, NM, additional
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- 2018
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7. P3.194 Investigating hiv/aids mortality in the state of sao paulo (brazil): a strategy for intervention
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Rocha, SQ, primary, Silva, SR, additional, Estevam, DL, additional, Tancredi, MV, additional, Souza, RA, additional, and Ribeiro, MCGG, additional
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- 2017
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8. The occurrence of hepatitis B and delta virus infection within seven Amerindian ethnic groups in the Brazilian western Amazon
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da Fonseca Jc, Braga Ws, Brasil Lm, Castilho Mda C, and de Souza Ra
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Microbiology (medical) ,HBsAg ,lcsh:Arctic medicine. Tropical medicine ,lcsh:RC955-962 ,Hepatite B ,Virus ,Serology ,Amerindians ,Hepatite delta ,Prevalence ,medicine ,Infectivity ,Indígenas ,Transmission (medicine) ,business.industry ,Hepatitis B ,medicine.disease ,Hepatitis D ,Virology ,Amazônia ,Infectious Diseases ,HBeAg ,Hepatitis delta ,Parasitology ,business - Abstract
A infecção pelo VHB e VHD são importantes problemas de saúde na Amazônia. Este estudo avalia a prevalência da infecção por esses agentes em sete grupos indígenas do Estado do Amazonas. A taxa de infecção passada pelo VHB encontrada foi de 54,5% e a de portadores do AgHBs de 9,7%. Observa-se variação importante destes marcadores entre as aldeias, inclusive da mesma etnia. Não evidenciamos marcador de infecção aguda, os quatro AgHBe reativos eram todos Apurinã, da mesma aldeia, e três da mesma família. O VHD foi encontrado em 13,4% dos AgHBs reativos. O padrão de infecção pelo VHB e VHD encontrado possui as seguintes características: endemicidade elevada, baixo potencial de infectividade, transmissão marcada em idade precoce, provável transmissão familiar, e pouca importância da transmissão vertical. Entretanto, também sugere que esses vírus não tenham sido ainda introduzidos efetivamente em algumas das etnias estudadas. HBV and HDV infections are a major health problem in the Amazon. This study evaluates the prevalence of these viruses within Indians groups, measuring the frequency of serological markers. The prevalence of past infection was 54.5% and HBsAg was found in 9.7%. An important variation of those markers was detected between villages, inclusively within the same ethnic group. None showed evidence of an acute infection. All HBeAg reactive were Apurinã, living in the same village and three of them from the same family. The prevalence of anti-HDT was 13.4% in HBsAg positive individuals. The authors observed high prevalence of HBV and HDV infection with the following pattern: low degree of infectivity, marked transmission in early ages, intra-familial dissemination, and lack of importance of vertical transmission. However, the results suggest that these viruses were not yet introduced effectively in some of the studied groups.
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- 2001
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9. Three dimensional typological studies using scanning electron microscopy for characterization of Termitomyces pellets obtained from submerged growth conditions.
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de Souza, RA and Kamat, NM
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SCANNING electron microscopy , *TERMITOMYCES , *MICROHETEROGENEITY , *FUNGAL morphology , *FILAMENTOUS fungi - Abstract
There are gaps in existing understanding of fungal pellet growth dynamics. We used scanning electron microscopy (SEM) for morphological characterization of the biomass organization of Termitomyces pellets for seven species: T. microcarpus (TMI1), T. albuminosus (TAL1, TAL2), T. striatus (TSTR), T. aurantiacus (TAUR), T. heimii (THE1, THE2), T. globulus (TGLO) and T. clypeatus (TCL1, TCL2, TCL3, TCL4, TCL5). We assessed the utility of SEM for morphological and structural characterization of Termitomyces spp. in three dimensional (3D) pellet form to identify ideal pellet morphology for industrial use. Typological classification of Termitomyces species was based on furrows, isotropy, total motifs and fractal dimensions. The pellets formed were entangled and exhibited highly compacted mycelial mass with microheterogeneity and microporosity. The mean density of furrows of Termitomyces species was between 10,000 and 11,300 cm/cm2, percentage isotropy was 30−80 and total motifs varied from 300 to 2500. TGLO exhibited the highest furrow mean density, 11243 cm/cm2, which indicated a compact, cerebroid structure with complex ridges and furrows, whereas TAL2 exhibited the lowest furrow density. TMI1a exhibited a high percentage isotropic value, 74.6, TSTR exhibited the lowest, 30.9. Total motif number also was used as a typological classification parameter. Fractal values were 2.64−2.78 for various submerged conditions of Termitomyces species. TAL1 exhibited the highest fractal dimension and TAL2 the lowest, which indicates the complexity of branching patterns. Three-dimensional SEM image analysis can provide insight into pellet micromorphology and is a powerful tool for exploring topographical details of pellets. [ABSTRACT FROM AUTHOR]
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- 2018
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10. Ultrafast structural dynamics in condensed matter
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Paul Beaud, Urs Staub, Christopher J. Milne, De Souza Ra, Steven L. Johnson, E. Vorobeva, Gerhard Ingold, Andrin Caviezel, and S. O. Mariager
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Diffraction ,Femtosecond x-rays ,Phase transition ,Time Factors ,Field (physics) ,Physics::Optics ,02 engineering and technology ,01 natural sciences ,X-Ray Diffraction ,0103 physical sciences ,010306 general physics ,QD1-999 ,Physics ,Molecular Structure ,Ultrafast structural dynamics ,Coherent phonons ,Strongly correlated electron systems ,General Medicine ,General Chemistry ,021001 nanoscience & nanotechnology ,Chemistry ,Chemical physics ,Phase transitions ,Femtosecond ,X-ray crystallography ,Quantum Theory ,Strongly correlated material ,Atomic physics ,0210 nano-technology ,Crystallization ,Ultrashort pulse ,Excitation - Abstract
We review our recent activity in the field of photo-induced structural dynamics in crystalline solids studied using femtosecond X-ray diffraction techniques.
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- 2011
11. Acute hepatotoxicity of Crotalus durissus terrificus (South American rattlesnake) venom in rats
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França,RF, Vieira,RP, Ferrari,EF, Souza,RA, Osorio,RAL, Prianti-Jr,ACG, Hyslop,S, Zamuner,SR, Cogo,JC, and Ribeiro,W
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histology ,hepatotoxicity ,rattlesnake ,ALT ,venom ,AST ,Crotalus durissus terrificus ,liver enzymes - Abstract
Venom of the South American rattlesnake, Crotalus durissus terrificus (Cdt), presents myotoxic and neurotoxic outcomes, but reports on its effects on the liver are scarce. This study examined the hepatotoxicity resulting from Cdt venom administration (100, 200 and 300 µg/kg) in male Wistar rats. Animals were studies at 3, 6, 9 and 12 hours after venom injection. The hepatotoxicity was assessed through serum levels of aspartate aminotransferase (AST), alanine aminotransferase (ALT), alkaline phosphatase (AP), gamma glutamyl transferase (GGT), bilirrubin and also by histopathological evaluation. All the different concentrations of Cdt venom resulted in increased levels of hepatic enzymes, when compared with the control group, except for the 100 µg/kg dose, which presented normal levels at 9 and 12 hours after venom administration. Bilirrubin levels remained unchanged by Cdt venom. Histological analysis revealed endothelial damage, inflammatory cell infiltration, as well as sinusoidal and portal congestion. Based on these observations, we may conclude that Cdt venom causes dose- and time-dependent hepatic damage in rats, characterized by elevated hepatic enzyme levels and histological alterations.
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- 2009
12. Secondary-ion-mass-spectroscopy study of oxygen tracer diffusion in a c-axis-oriented YBa2Cu3O7- delta film
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Kilner, Tate, Lee, Chater, Fox, De Souza RA, and Quincey
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- 1995
13. Clinical characteristics and outcomes of patients with acute lung injury and ARDS
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Bhadade, RR, primary, Harde, MJ, additional, de Souza, RA, additional, and Khot, A, additional
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- 2011
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14. Acute hepatotoxicity of Crotalus durissus terrificus (South American rattlesnake) venom in rats
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França, RF, primary, Vieira, RP, additional, Ferrari, EF, additional, Souza, RA, additional, Osorio, RAL, additional, Prianti-Jr, ACG, additional, Hyslop, S, additional, Zamuner, SR, additional, Cogo, JC, additional, and Ribeiro, W, additional
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- 2009
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15. Eletrophysiographic and histological analysis of the anterior tibial muscle from rats submitted to aerobic training with swimming.
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Gouvêa HA, de Souza RA, Bezerra Il, Campbell JE, Pires FS, Danella PM, Priant AC, and Marcos RL
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- 2009
16. Motivations and experiences of ethics/bioethic subjects in nursing Motivaciones y experiencias de la enseñanza de la ética/bioética en enfermería Motivações e experiências do ensino da ética/bioética em enfermagem
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PALHANO DE MELO THAYSE APARECIDA, CARDOSO AMARAL RUBIA FERNANDA, CAVALCANTI DE FARIAS BREHMER LAURA, DORNELES SCHOELLER SORAIA, and SOUZA RAMOS FLÁVIA REGINA
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Education, Nursing , Teaching , Ethics, Bioethics ,Nursing ,RT1-120 - Abstract
his paper deals with a research on the discourse of ethics in the nurse education process. Objective: this study sought to characterize professors in terms of their teaching experiences and motivations in nursing courses. Methodology: case study with a documentary stage and a focus group with 50 professors from 6 courses of Santa Catarina (Brazil). Results and discussion: Despite the precarious conditions, nurses seem to be willing to dedicate themselves to teaching career paths since they wish to contribute to change and develop the profession or because of the professional perspectives and nature of the teaching career. In spite of the different experiences in teaching ethics, professors perceive themselves as stakeholders in the ethics formation of nurses, especially as they consider the daily academic and welfare life as a venue for ethical formation, as well as the values, positions, and example as the expression of the influence of teaching performance on ethics formation. Conclusions: the reflection over ethics formation should not confine to the discussion of the pedagogical contents and strategies involved in teaching ethics and bioethics, hence, the importance of discussing about ethics in educational experience and envisage the speech being built by these professors.El artículo trata de un pasaje de una investigación sobre el discurso de la ética en el proceso de formación del enfermero. Objetivo: este estudio buscó caracterizar a los profesores en cuanto a sus experiencias y motivaciones en la enseñanza de la ética y bioética en las carreras de enfermería. Metodología: Se desarrolló como estudio de caso, con etapa documental y grupo focal con 50 profesores de 6 programas de Santa Catarina (Brasil). Resultados y discusión: a pesar de las condiciones de precariedad existe una intención de fijación y dedicación de enfermeros a la carrera docente, motivada por el deseo de ser docente para ayudar a generar un cambio y desarrollar la profesión y por las perspectivas profesionales y la naturaleza del trabajo docente. Aunque existan diferentes experiencias en cuanto a la enseñanza de la ética, los profesores se perciben a sí mismos como actores en la formación ética del enfermero, especialmente, por el hecho de considerar la cotidianidad de la vida académica y asistencial como espacio de formación ética, y, asimismo, los valores, la postura y el ejemplo como expresión del desempeño del docente en la formación ética. Conclusiones: la reflexión de la formación ética del enfermero o enfermera no se debe limitar a debatir sobre los contenidos y estrategias pedagógicas involucradas en la enseñanza de la ética y de la bioética, de allí la importancia de problematizar la ética en la experiencia educativa y visualizar el discurso que los sujetos profesores vienen construyendo.O artigo trata de recorte de uma pesquisa sobre o discurso da ética no processo de formação do enfermeiro. Objetivo: este estudo buscou caracterizar os professores quanto a experiências e motivações para o ensino da ética e bioética nos cursos de enfermagem. Metodologia: Desenvolveu-se como estudo de caso, com etapa documental e grupo focal com 50 professores de 6 cursos de Santa Catarina (Brasil). Resultados e discussão: apesar de condições de precariedade há uma intenção de fixação e dedicação de enfermeiros à carreira docente, motivada pelo desejo de ser docente para contribuir com a mudança e o desenvolvimento da profissão ou pelas perspectivas profissionais e natureza do trabalho docente. Embora haja diferentes experiências no ensino de ética os professores percebem-se atuantes na formação ética do enfermeiro, especialmente por considerarem o cotidiano da vida acadêmica e assistencial como espaço da formação ética, assim como, os valores, postura e exemplo como expressão da atuação docente na formação ética. Conclusões: a reflexão da formação ética da(o) enfermeira(o) não deve se limitar a discussão dos conteúdos e estratégias pedagógicas envolvidas no ensino da ética e da bioética, daí a importância de problematizar a ética na experiência educativa e visualizar o discurso que vem sendo construído pelos sujeitos professores.
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- 2010
17. Cromoendoscopia com azul de metileno para diagnóstico de esôfago de Barrett
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Saporiti Marcela Rocha Loures, Souza Raquel Canzi de Almada e, Pisani Júlio César, Amarante Heda Maria Barska dos Santos, Carmes Eliane Ribeiro, and Sakamoto Danielle Giacometti
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Esôfago de Barrett/diagnóstico ,Endoscopia gastrointestinal ,Azul de metileno ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
RACIONAL: O esôfago de Barrett é uma condição na qual a mucosa escamosa esofágica é substituída por metaplasia intestinal especializada, que predispõe o paciente ao desenvolvimento de adenocarcinoma esofágico. Este é precedido por displasia e carcinoma precoce; o rastreamento dessas lesões faz-se através de endoscopias digestivas periódicas com biopsias randomizadas. A incidência aumentada desse, tem despertado interesse no desenvolvimento de novas técnicas endoscópicas, como a cromoendoscopia com azul de metileno, para melhorar a identificação do esôfago de Barrett e suas complicações. OBJETIVO: Determinar se as biopsias dirigidas pela cromoendoscopia com azul de metileno oferecem vantagem em relação ao método convencional na detecção do esôfago de Barrett. MATERIAL E MÉTODO: Estudaram-se 45 pacientes com diagnóstico prévio de esôfago de Barrett, todos submetidos a dois exames de endoscopia digestiva alta com biopsias, em intervalo de 4 semanas, um convencional e outro com aplicação do corante, no período entre abril e outubro de 2002. RESULTADOS: Os resultados histológicos das biopsias de todos os exames foram comparados. Observou-se sensibilidade de 62,5%, especificidade de 15,4%, valor preditivo positivo de 57,7% e valor preditivo negativo de 18,2%. Não houve diferença significativa quanto ao número de biopsias. O tempo de duração da técnica de cromoendoscopia foi significativamente maior quando comparado ao da técnica convencional. CONCLUSÃO: Não se observou vantagem na utilização da cromoendoscopia em relação à técnica randomizada no diagnóstico do esôfago de Barrett.
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- 2003
18. Diagnóstico da hemoglobina S: análise comparativa do teste de solubilidade com a eletroforese em pH alcalino e ácido no período neonatal
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Bandeira Flavia Miranda Gomes de Constantino, Leal Mariana de Carvalho, Souza Rafael Rocha, Furtado Veridiana Câmara, and Gomes Yara de Miranda
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Hemoglobina falciforme ,Triagem neonatal ,Hemoglobinopatias ,Diagnóstico ,Gynecology and obstetrics ,RG1-991 - Abstract
OBJETIVOS: avaliar a eficácia do teste de solubilidade como método de triagem na detecção de Hb S no período neonatal, comparando-o com as técnicas de eletroforese em pH alcalino e ácido. MÉTODOS: o sangue de cordão umbilical de 1.988 recém-nascidos (RN) na maternidade do Instituto Materno-Infantil de Pernambuco (IMIP), durante o período outubro de 1996 a março de 1997, foi submetido à eletroforese de hemoglobina em pH alcalino e ao teste de solubilidade. A eletroforese de hemoglobina em pH ácido foi realizada como teste confirmatório em todos os casos em que a eletroforese em pH alcalino foi positiva para Hb S ou Hb C. RESULTADOS: a eletroforese de Hb em pH alcalino detectou a presença de Hb S em 105 (5,3%) amostras. A análise dessas 105 amostras através da eletroforese em pH ácido mostrou que 98 (93,3%) mantiveram o mesmo padrão eletroforético. O teste de solubilidade detectou apenas um RN portador de Hb S. CONCLUSÕES: a eletroforese de Hb em pH alcalino mostrou-se eficaz no diagnóstico da hemoglobina S no período neonatal, podendo ser utilizada nos locais onde técnicas mais sofisticadas não estão implantadas. O teste de solubilidade não serve como abordagem diagnóstica para a presença de Hb S no período neonatal.
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- 2003
19. P3.194 Investigating hiv/aids mortality in the state of sao paulo (brazil): a strategy for intervention
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Rocha, SQ, Silva, SR, Estevam, DL, Tancredi, MV, Souza, RA, and Ribeiro, MCGG
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IntroductionThe response to the AIDS epidemic in the State of Sãão Paulo contributes significantly for the positive results of the Brazilian National Program. There was a decrease of 71.6% in the State’s mortality rates between the years of 1995 and 2014, when the rate reached 6.5 per 1 00 000 inhabitants/year.MethodsSince 2014 Sao Paulo State’s STI/AIDS Programme has compiled investigative data on deaths of HIV-infected individuals, tracing profiles and evaluating causes of death and associated vulnerabilities.ResultsFrom 1586 deaths investigated between 2013 and 2016, a significant ratio (66%) is under 50 years old and a considerable number (32%) of individuals survived until two years after the diagnosis. Late-diagnosis, late implementation of TARV and poor adhesion are notable among the deaths, as well as a significant ratio (29%) of substance-abusing individuals. AIDS-defining illnesses (particularly tuberculosis) rank as the highest causes of death (55%) followed by non-AIDS-defining bacterial infections (18%), which are both predominant among the deaths of those patients with therapeutic disruption and/or advanced HIV infection. Causes unrelated to HIV and bacterial infections are predominant among patients with suppression of HIV-replication and recent CD4 count above 500 cells/mm3.ConclusionEven in light of a positive context due to the decrease of MR, the oversight of deaths of HIV-infected individuals remains a fundamental practice for identifying vulnerabilities and works as a guiding principle for interventions that may contribute to a decrease in the number of avoidable-deaths. The results indicate the relevance of actions towards early-diagnosing, monitoring of patient-enrollment and adhesion to services, timely start of antiretroviral therapy, continued oversight of patient-adhesion to medications and diagnosis as well as towards the treatment of potentially-avoidable conditions such as latent infection of tuberculosis and vaccination for pneumococo.Some groups - such as drug and alcohol-abusing individuals - require a case-by-case approach.
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- 2017
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20. Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.)
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Ormeño-Orrillo Ernesto, Menna Pâmela, Almeida Luiz Gonzaga P, Ollero Francisco Javier, Nicolás Marisa Fabiana, Pains Rodrigues Elisete, Shigueyoshi Nakatani Andre, Silva Batista Jesiane Stefânia, Oliveira Chueire Ligia Maria, Souza Rangel Celso, Ribeiro Vasconcelos Ana Tereza, Megías Manuel, Hungria Mariangela, and Martínez-Romero Esperanza
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Nodulation ,Nitrogen fixation ,Plant-microbe interactions ,Antimicrobial resistance ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 are α-Proteobacteria that establish nitrogen-fixing symbioses with a range of legume hosts. These strains are broadly used in commercial inoculants for application to common bean (Phaseolus vulgaris) in South America and Africa. Both strains display intrinsic resistance to several abiotic stressful conditions such as low soil pH and high temperatures, which are common in tropical environments, and to several antimicrobials, including pesticides. The genetic determinants of these interesting characteristics remain largely unknown. Results Genome sequencing revealed that CIAT 899 and PRF 81 share a highly-conserved symbiotic plasmid (pSym) that is present also in Rhizobium leucaenae CFN 299, a rhizobium displaying a similar host range. This pSym seems to have arisen by a co-integration event between two replicons. Remarkably, three distinct nodA genes were found in the pSym, a characteristic that may contribute to the broad host range of these rhizobia. Genes for biosynthesis and modulation of plant-hormone levels were also identified in the pSym. Analysis of genes involved in stress response showed that CIAT 899 and PRF 81 are well equipped to cope with low pH, high temperatures and also with oxidative and osmotic stresses. Interestingly, the genomes of CIAT 899 and PRF 81 had large numbers of genes encoding drug-efflux systems, which may explain their high resistance to antimicrobials. Genome analysis also revealed a wide array of traits that may allow these strains to be successful rhizosphere colonizers, including surface polysaccharides, uptake transporters and catabolic enzymes for nutrients, diverse iron-acquisition systems, cell wall-degrading enzymes, type I and IV pili, and novel T1SS and T5SS secreted adhesins. Conclusions Availability of the complete genome sequences of CIAT 899 and PRF 81 may be exploited in further efforts to understand the interaction of tropical rhizobia with common bean and other legume hosts.
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- 2012
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21. A review of methods for detect human Papillomavirus infection
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Abreu André L P, Souza Raquel P, Gimenes Fabrícia, and Consolaro Marcia E L
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Human Papillomavirus ,Detection methods ,Biomarkers ,Cervical cancer ,Cervical lesions progression ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Human Papillomavirus (HPV) is the most common sexually transmitted virus. Worldwide, the most common high-risk (HR)-HPV are -16/18, and approximately 70% of cervical cancers (CC) are due to infection by these genotypes. Persistent infection by HR-HPV is a necessary but not sufficient cause of this cancer, which develops over a long period through precursor lesions, which can be detected by cytological screening. Although this screening has decreased the incidence of CC, HPV-related cervical disease, including premalignant and malignant lesions, continues to be a major burden on health-care systems. Although not completely elucidated, the HPV-driven molecular mechanisms underlying the development of cervical lesions have provided a number of potential biomarkers for both diagnostic and prognostic use in the clinical management of women with HPV-related cervical disease, and these biomarkers can also be used to increase the positive predictive value of current screening methods. In addition, they can provide insights into the biology of HPV-induced cancer and thus lead to the development of nonsurgical therapies. Considering the importance of detecting HPV and related biomarkers, a variety of methods are being developed for these purposes. This review summarizes current knowledge of detection methods for HPV, and related biomarkers that can be used to discriminate lesions with a high risk of progression to CC.
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- 2012
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22. AtlasT4SS: A curated database for type IV secretion systems
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Souza Rangel C, del Rosario Quispe Saji Guadalupe, Costa Maiana OC, Netto Diogo S, Lima Nicholas CB, Klein Cecília C, Vasconcelos Ana Tereza R, and Nicolás Marisa F
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Microbiology ,QR1-502 - Abstract
Abstract Background The type IV secretion system (T4SS) can be classified as a large family of macromolecule transporter systems, divided into three recognized sub-families, according to the well-known functions. The major sub-family is the conjugation system, which allows transfer of genetic material, such as a nucleoprotein, via cell contact among bacteria. Also, the conjugation system can transfer genetic material from bacteria to eukaryotic cells; such is the case with the T-DNA transfer of Agrobacterium tumefaciens to host plant cells. The system of effector protein transport constitutes the second sub-family, and the third one corresponds to the DNA uptake/release system. Genome analyses have revealed numerous T4SS in Bacteria and Archaea. The purpose of this work was to organize, classify, and integrate the T4SS data into a single database, called AtlasT4SS - the first public database devoted exclusively to this prokaryotic secretion system. Description The AtlasT4SS is a manual curated database that describes a large number of proteins related to the type IV secretion system reported so far in Gram-negative and Gram-positive bacteria, as well as in Archaea. The database was created using the RDBMS MySQL and the Catalyst Framework based in the Perl programming language and using the Model-View-Controller (MVC) design pattern for Web. The current version holds a comprehensive collection of 1,617 T4SS proteins from 58 Bacteria (49 Gram-negative and 9 Gram-Positive), one Archaea and 11 plasmids. By applying the bi-directional best hit (BBH) relationship in pairwise genome comparison, it was possible to obtain a core set of 134 clusters of orthologous genes encoding T4SS proteins. Conclusions In our database we present one way of classifying orthologous groups of T4SSs in a hierarchical classification scheme with three levels. The first level comprises four classes that are based on the organization of genetic determinants, shared homologies, and evolutionary relationships: (i) F-T4SS, (ii) P-T4SS, (iii) I-T4SS, and (iv) GI-T4SS. The second level designates a specific well-known protein families otherwise an uncharacterized protein family. Finally, in the third level, each protein of an ortholog cluster is classified according to its involvement in a specific cellular process. AtlasT4SS database is open access and is available at http://www.t4ss.lncc.br.
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- 2012
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23. Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales
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Vasconcelos Ana, Hungria Mariangela, Barcellos Fernando G, Souza Rangel C, and Carvalho Fabíola M
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Microbiology ,QR1-502 - Abstract
Abstract Background Species belonging to the Rhizobiales are intriguing and extensively researched for including both bacteria with the ability to fix nitrogen when in symbiosis with leguminous plants and pathogenic bacteria to animals and plants. Similarities between the strategies adopted by pathogenic and symbiotic Rhizobiales have been described, as well as high variability related to events of horizontal gene transfer. Although it is well known that chromosomal rearrangements, mutations and horizontal gene transfer influence the dynamics of bacterial genomes, in Rhizobiales, the scenario that determine pathogenic or symbiotic lifestyle are not clear and there are very few studies of comparative genomic between these classes of prokaryotic microorganisms trying to delineate the evolutionary characterization of symbiosis and pathogenesis. Results Non-symbiotic nitrogen-fixing bacteria and bacteria involved in bioremediation closer to symbionts and pathogens in study may assist in the origin and ancestry genes and the gene flow occurring in Rhizobiales. The genomic comparisons of 19 species of Rhizobiales, including nitrogen-fixing, bioremediators and pathogens resulted in 33 common clusters to biological nitrogen fixation and pathogenesis, 15 clusters exclusive to all nitrogen-fixing bacteria and bacteria involved in bioremediation, 13 clusters found in only some nitrogen-fixing and bioremediation bacteria, 01 cluster exclusive to some symbionts, and 01 cluster found only in some pathogens analyzed. In BBH performed to all strains studied, 77 common genes were obtained, 17 of which were related to biological nitrogen fixation and pathogenesis. Phylogenetic reconstructions for Fix, Nif, Nod, Vir, and Trb showed possible horizontal gene transfer events, grouping species of different phenotypes. Conclusions The presence of symbiotic and virulence genes in both pathogens and symbionts does not seem to be the only determinant factor for lifestyle evolution in these microorganisms, although they may act in common stages of host infection. The phylogenetic analysis for many distinct operons involved in these processes emphasizes the relevance of horizontal gene transfer events in the symbiotic and pathogenic similarity.
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- 2010
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24. Genomic taxonomy of vibrios
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Iida Tetsuya, Alves Nelson, Ussery David W, Vesth Tammi, Vasconcelos Ana, Souza Rangel C, Vicente Ana, Thompson Cristiane C, and Thompson Fabiano L
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Evolution ,QH359-425 - Abstract
Abstract Background Vibrio taxonomy has been based on a polyphasic approach. In this study, we retrieve useful taxonomic information (i.e. data that can be used to distinguish different taxonomic levels, such as species and genera) from 32 genome sequences of different vibrio species. We use a variety of tools to explore the taxonomic relationship between the sequenced genomes, including Multilocus Sequence Analysis (MLSA), supertrees, Average Amino Acid Identity (AAI), genomic signatures, and Genome BLAST atlases. Our aim is to analyse the usefulness of these tools for species identification in vibrios. Results We have generated four new genome sequences of three Vibrio species, i.e., V. alginolyticus 40B, V. harveyi-like 1DA3, and V. mimicus strains VM573 and VM603, and present a broad analyses of these genomes along with other sequenced Vibrio species. The genome atlas and pangenome plots provide a tantalizing image of the genomic differences that occur between closely related sister species, e.g. V. cholerae and V. mimicus. The vibrio pangenome contains around 26504 genes. The V. cholerae core genome and pangenome consist of 1520 and 6923 genes, respectively. Pangenomes might allow different strains of V. cholerae to occupy different niches. MLSA and supertree analyses resulted in a similar phylogenetic picture, with a clear distinction of four groups (Vibrio core group, V. cholerae-V. mimicus, Aliivibrio spp., and Photobacterium spp.). A Vibrio species is defined as a group of strains that share > 95% DNA identity in MLSA and supertree analysis, > 96% AAI, ≤ 10 genome signature dissimilarity, and > 61% proteome identity. Strains of the same species and species of the same genus will form monophyletic groups on the basis of MLSA and supertree. Conclusion The combination of different analytical and bioinformatics tools will enable the most accurate species identification through genomic computational analysis. This endeavour will culminate in the birth of the online genomic taxonomy whereby researchers and end-users of taxonomy will be able to identify their isolates through a web-based server. This novel approach to microbial systematics will result in a tremendous advance concerning biodiversity discovery, description, and understanding.
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- 2009
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25. Indivíduo, esporte e raça
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Souza Ramos
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Sports ,GV557-1198.995 - Abstract
...
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- 1936
26. Prognostic implications across histological subtypes of head and neck squamous cell carcinoma: An update.
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Gonçalves MWA, de Lima-Souza RA, Ribeiro-de-Assis MCF, Cattan MES, Egal ESA, Altemani A, and Mariano FV
- Abstract
Background: Head and neck squamous cell carcinoma (HNSCC) is one of the most common malignancies worldwide, arising from the mucosal epithelium of the oral cavity, oropharynx, hypopharynx, nasopharynx, larynx, and sinuses. In addition to the conventional morphologic pattern characterized by the degree of cellular atypia and squamous differentiation, HNSCC is classified into eight histopathologic subtypes: basaloid, spindle cell, adenosquamous, cuniculatum, verrucous, lymphoepithelial, papillary, and acantholytic., Methods: This review provides a comprehensive review of the literature on the prognostic implications of the histological subtypes of HNSCC., Results: Although there is extensive literature on HNSCC, few studies specifically focus on the treatment and prognosis of its histopathologic subtypes. Among these subtypes, verrucous squamous cell carcinoma and carcinoma cuniculatum generally have a favorable prognosis, while others, such as basaloid and spindle cell squamous cell carcinoma, tend to follow a more aggressive clinical course., Conclusion: In this review, we delve into the histopathological subtypes of HNSCC and explore their clinicopathological, molecular, and prognostic findings. Further molecular investigations aimed at identifying targeted therapies for these subtypes are necessary. Moreover, it is crucial to recognize the emerging histopathological variants documented in the literature, considering the ongoing limitations in prognostic assessment., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Masson SAS. All rights reserved.)
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- 2024
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27. Sodium bicarbonate improved CrossFit® Benchmark Fran, but not subsequent 500 m rowing performance.
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Silva de Souza RA, Barreto G, Alves Freire PA, de Abreu WC, Saunders B, and da Silva SF
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- Humans, Double-Blind Method, Male, Adult, Young Adult, Female, Performance-Enhancing Substances administration & dosage, Performance-Enhancing Substances pharmacology, Sodium Bicarbonate administration & dosage, Sodium Bicarbonate pharmacology, Athletic Performance physiology, Cross-Over Studies, Water Sports physiology, Dietary Supplements
- Abstract
The aim of this study was to evaluate the influence of sodium bicarbonate (SB) supplementation on physical performance, neuromuscular and metabolic responses during CrossFit® exercise. Seventeen Advanced CrossFit®-trained athletes completed the randomized, double-blind, placebo-controlled crossover protocol consisting of four visits, including two familiarization sessions and two experimental trials separated by a 7-day washout period. Participants supplemented 0.3 g/kg body mass (BM) of SB or placebo 120-min prior to performing the CrossFit® benchmark Fran followed by 500 m of rowing. SB improved time to complete Fran compared to PLA (291.2 ± 71.1 vs. 303.3 ± 77.8 s, p = 0.047), but not 500 m rowing (112.1 s ± 7.9 vs. 113.2 s ± 8.9 s, p = 0.26). No substantial side-effects were reported during the trials. This study showed that SB improved CrossFit® benchmark Fran performance, but not subsequent 500-m rowing. These data suggest that SB might be an interesting supplementation strategy for CrossFit® athletes.
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- 2024
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28. Secretory carcinoma of the minor salivary gland: An in-depth case report.
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de Lima-Souza RA, Ferreira IV, Chone CT, Egal ESA, Skálová A, Altemani A, and Mariano FV
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- Humans, Female, Middle Aged, Carcinoma pathology, Tomography, X-Ray Computed, Salivary Gland Neoplasms pathology, Salivary Gland Neoplasms diagnosis, Salivary Glands, Minor pathology
- Abstract
A 56-year-old female was referred to our service for management of a malignant salivary gland neoplasm with compromised margins that had been biopsied previously at another service. The patient reported a twenty-year history of a lesion in the oral cavity with progressive and exuberant growth over the past two years, associated with local pain and dyspnea. Physical examination revealed an erythematous, ulcerated, and hemorrhagic lesion measuring approximately 3 cm on the left soft palate and tonsillar pillar. Computed tomography revealed an expansile lesion in the topography of the left soft palate, growing predominantly toward the lumen of the nasopharynx and partially invading the left wall of this region. The patient underwent surgery and histopathologic examination revealed an infiltrative and aggressive epithelial neoplasia with large vacuolated and eosinophilic cytoplasm, vesicular nuclei, and prominent nucleoli. The neoplastic cells were arranged in a solid, microcystic, tubular, and follicular pattern with eosinophilic luminal secretion. Mitotic figures were frequent and all margins were affected by the neoplasia. Morphologic and immunohistochemical features supported the diagnosis of secretory carcinoma, and the patient is currently being followed for further therapeutic intervention., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)
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- 2024
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29. Clinicopathological analysis of hybrid carcinomas of the salivary glands: A systematic review.
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Kimura TC, de Lima-Souza RA, Lavareze L, Egal ESA, Altemani A, and Mariano FV
- Abstract
Hybrid carcinomas (HC) are the association of two or more malignant neoplasms arising within the same topographical area. The present study is a systematic review of HC of the salivary glands. This study aimed to assess HC clinicopathological features and molecular profile. Observational studies, case series, and case reports were included. PubMed, Scopus, EMBASE, Lilacs, Web of Science, and gray literature were searched until June 2024. A total of 18 articles including 34 patients were included. HC of the salivary glands is presented as a painless mass affecting mainly the parotid gland of adults with a preference for male patients. Histologically, adenoid cystic carcinoma and epithelial-myoepithelial carcinoma were the most prevalent association, being surgical excision with radiotherapy the most common treatment. The most aggressive component, even when representing only a small proportion of the tumor, should guide the patient's treatment. Further molecular studies are necessary to determine if HC are distinct entities or biologically identical to the individual neoplasms. In conclusion, this systematic review may contribute to a better understanding of this rare lesion, their biological behavior, treatments employed, and the outcome of these patients., Competing Interests: Declaration of competing interests The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Masson SAS. All rights reserved.)
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- 2024
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30. Distinct copy number signatures between residual benign and transformed areas of carcinoma ex pleomorphic adenoma.
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Scarini JF, Sabino WL, de Lima-Souza RA, Egal ESA, Tincani AJ, Gondak R, Kowalski LP, Krepischi ACV, Altemani A, and Mariano FV
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- Humans, Male, Female, Middle Aged, Aged, Cell Transformation, Neoplastic genetics, Salivary Gland Neoplasms genetics, Salivary Gland Neoplasms pathology, Adult, HMGA2 Protein genetics, Receptor, ErbB-2 genetics, Receptor, ErbB-2 metabolism, DNA-Binding Proteins genetics, Adenoma, Pleomorphic genetics, Adenoma, Pleomorphic pathology, DNA Copy Number Variations, Comparative Genomic Hybridization
- Abstract
The mechanisms involved with the pathogenesis of carcinoma ex pleomorphic adenoma (CXPA) seem to be associated with the accumulation of molecular alterations in the pleomorphic adenoma (PA). In this sense, using array-based comparative genomic hybridization (aCGH) a rare series of 27 cases of CXPA and 14 residual PA (rPA) adjacent to the transformation area, we investigated the profile of the copy number alterations (CNAs) comparing benign residual and transformed areas. The main findings were correlated with the histopathological classification by histologic subtype and degree of invasion. The distribution of losses (p = 0.187) and amplifications (p = 0.172) was not statistically different between rPA and CXPA. The number of gains was increased in the transformed areas compared to the benign residual areas (p = 0.005). PLAG1 gain was maintained along the malignant transformation, as it was observed in both residual PA and CXPA samples, likely being an earlier event during transformation. The amplification of GRB7 and ERBB2 may also be an initial step in the malignant transformation of PA to CXPA (salivary duct carcinoma subtype). Furthermore, the amplification of HMGA2 and RPSAP52 were the most prevalent alterations among the studied samples. It was noteworthy that amplified genes in the transformed areas of the tumors were enriched for biological processes related to immune signaling. In conclusion, our results underscored for the first-time crucial CNAs in CXPA, some of them shared with the residual benign area adjacent to the transformation site. These CNAs included PLAG1 gain, as well as amplification of GRB7, ERBB2, HMGA2, and RPSAP52., (© 2024. The Author(s).)
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- 2024
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31. Amazonian amphibians: diversity, spatial distribution patterns, conservation and sampling deficits.
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Penhacek M, Souza TS, Santos JP, Guerra V, Castro-Souza RA, and Rodrigues DJ
- Abstract
The Amazon biome is home to the largest tropical forest on the planet and has the greatest global biodiversity on Earth. Despite this, several less charismatic taxonomic groups, such as amphibians, lack comprehensive studies on their species richness and spatial distribution in the Amazon Region. In this study, we investigated: i) patterns of richness and endemism of Amazonian amphibians across geopolitical and biogeographic divisions, ii) similarities between different Amazonian bioregions, iii) temporal trends in amphibian sampling, iv) conservation status of amphibians according to assessments of the IUCN and v) the importance of diverse data sources in building a robust database of amphibian occurrences. We aggregated data from four different sources: publicly accessible platforms, peer-reviewed articles, grey literature and fieldwork inventories spanning 15 years (2007-2021), ultimately compiling 160,643 records of 947 species across 7,418 sampled sites. The greatest diversity of species was found in Peru, Brazil and Ecuador, with notable amphibian diversity and endemism in regions such as the western basins and the Tapajós River Basin in the central-southern Amazon. Geographical analysis of species diversity revealed four distinct groups defined by latitudinal (the Amazon River) and longitudinal (the Juruá, Madeira and Tapajós Rivers) gradients, with low species similarity (< 40%), particularly in the basins of north-western Amazonia. Amphibian sampling in the Amazon has intensified since the 1950s with the establishment of important research centres such as INPA and the GOELD Museum in the Brazilian Amazon. Approximately 18% of Amazonian amphibian species face extinction risk, according to IUCN assessments, highlighting the need for comprehensive data sources to understand and conserve species in this megadiverse region. Our findings suggest that river systems likely influence Amazonian amphibian species composition due to biogeographic history, emphasising the need for robust taxonomic and spatial databases. This study, therefore, contributes a valuable large-scale dataset for Amazonian amphibians, guiding future research and strategies for amphibian conservation., Competing Interests: No conflict of interest to declare Disclaimer: This article is (co-)authored by any of the Editors-in-Chief, Managing Editors or their deputies in this journal., (Marcos Penhacek, Thadeu Sobral Souza, Jessie Pereira Santos, Vinicius Guerra, Rodrigo Antônio Castro-Souza, Domingos de Jesus Rodrigues.)
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- 2024
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32. Necrotic palatal collapse in a 72-year-old woman with uncontrolled diabetes.
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Ribeiro de Assis MCF, Lavareze L, de Lima-Souza RA, Cruz AJR, Chone CT, Egal ESA, Altemani A, and Mariano FV
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- Humans, Female, Aged, Diagnosis, Differential, Diabetes Mellitus, Type 2 complications, Palate, Hard pathology, Necrosis
- Abstract
Competing Interests: Disclosure None of the authors reported any disclosures.
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- 2024
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33. Expanding the Molecular Spectrum of Carcinoma Ex Pleomorphic Adenoma: An Analysis of 84 Cases With a Novel HMGA2::LINC02389 Fusion.
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de Lima-Souza RA, Altemani A, Michal M, Mariano FV, Leivo I, and Skálová A
- Abstract
Carcinoma ex pleomorphic adenoma (CXPA) is an aggressive epithelial and/or myoepithelial neoplasm that arises in association with a pleomorphic adenoma (PA). Its etiopathogenesis remains poorly understood, but it is believed that the development of this tumor is due to the accumulation of genetic, protein, metabolic, and epigenetic alterations in a PA. A retrospective review of the Salivary Gland Tumor Registry in Pilsen yielded 84 CXPA, namely 25/84 salivary duct carcinoma (SDC), 15/84 myoepithelial carcinoma (MC), 1/84 epithelial-myoepithelial carcinoma (EMC), and 1/84 adenoid cystic carcinoma (AdCC). All 84 CXPA cases were analyzed by next-generation sequencing (NGS) and/or fluorescence in situ hybridization (FISH). Forty-three tumors originally diagnosed as CXPA (43/84, 51.2%) showed some molecular alteration. Fusion transcripts were identified in 12/16 (75%) CXPA, including LIFR::PLAG1, CTNNB1::PLAG1, FGFR1::PLAG1, and a novel fusion, HMGA2::LINC02389. Most of the fusions were confirmed by FISH using PLAG1 (6/11) and HMGA2 (1/1) gene break probes. Split signals indicating gene break were identified by FISH for PLAG1 (12/17), HMGA2 (3/4), EWSR1 (7/22), and MYB (2/7). Concerning pathogenic mutations, only CXPA with epithelial differentiation (SDC) presented these alterations, including HRAS mutation (2/4), TP53 (1/4), PTEN (1/4), and ATK1 (1/4). In addition, amplifications in ERBB2 (17/35), MDM2 (1/4), and EWSR1 (1/7) were detected. A novel finding was the discovery of an HMGA2::LINC02389 fusion in 1 patient with EMC ex-PA. The present results indicate that molecular profiling of CXPA with myoepithelial differentiation (MC) tends to reveal chromosomal fusion events, whereas CXPA with epithelial differentiation (SDC) tends to have a higher frequency of pathogenic mutations and gene amplifications., Competing Interests: Conflicts of Interest and Source of Funding: The authors have disclosed that they have no significant relationships with, or financial interest in, any commercial companies pertaining to this article., (Copyright © 2024 Wolters Kluwer Health, Inc. All rights reserved.)
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- 2024
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34. Insights into the molecular alterations of PLAG1 and HMGA2 associated with malignant phenotype acquisition in pleomorphic adenoma.
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de Lima-Souza RA, Vieira GS, Kimura TC, Scarini JF, Lavareze L, Maciel TF, Gonçalves MWA, Egal ESA, Altemani A, and Mariano FV
- Abstract
Pleomorphic adenoma (PA) is the most common neoplasm of the salivary gland, presenting with a variety of histological features. In some cases, PA can undergo malignant transformation to carcinoma ex pleomorphic adenoma (CXPA). The transition from PA to CXPA is associated with complex molecular alterations, particularly involving the pleomorphic adenoma gene 1 (PLAG1) and high mobility group protein gene (HMGA2). This review investigates the molecular alterations of PLAG1 and HMGA2 in all domains in the malignant transformation of PA. Our analysis highlights that these markers are key alterations in the etiopathogenesis of PA and CXPA, with gene fusion and amplification being frequently reported mechanisms. Although the exact role of PLAG1 and HMGA2 in the oncogenic process remains unclear, further studies on the HMGA2 and PLAG1, are needed particularly in HMGA2-PLAG1-IGF2 which is proving to be a potential pathway for the development of clinically applicable therapies, especially for CXPA management., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)
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- 2024
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35. Impact of the improvement of living conditions on tuberculosis mortality in Brazil: an ecological study.
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Natividade M, Pereira M, Stauber C, Miranda S, Teixeira MG, Souza RA, Anjos MSD, Barros R, Morato DG, Aragão E, Pereira SM, and Costa MDCN
- Subjects
- Humans, Brazil epidemiology, Risk Factors, Socioeconomic Factors, Urban Population statistics & numerical data, Tuberculosis mortality
- Abstract
Background: The risk of death due to tuberculosis (TB) in Brazil is high and strongly related to living conditions (LC). However, epidemiological studies investigating changes in LC and their impact on TB are lacking., Objectives: To evaluate the impact of LC on TB mortality in Brazil., Design and Setting: This ecological study, using panel data on spatial and temporal aggregates, was conducted in 1,614 municipalities between 2002 and 2015., Methods: Data were collected from the Mortality Information System and the Brazilian Institute of Geography and Statistics. The proxy variable used for LC was the Urban Health Index (UHI). Negative binomial regression models were used to estimate the effect of the UHI on TB mortality rate. Attributable risk (AR) was used as an impact measure., Results: From 2002 to 2015, TB mortality rate decreased by 23.5%, and LC improved. The continuous model analysis resulted in an RR = 0.89 (95%CI = 0.82-0.96), so the AR was -12.3%. The categorized model showed an effect of 0.92 (95%CI = 0.83-0.95) in municipalities with intermediate LC and of 0.83 (95%CI = 0.82-0.91) in those with low LC, representing an AR for TB mortality of -8.7% and -20.5%, respectively., Conclusions: Improved LC impacted TB mortality, even when adjusted for other determinants. This impact was greater in the strata of low-LC municipalities.
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- 2024
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36. A Single Model for the Thermodynamics and Kinetics of Metal Exsolution from Perovskite Oxides.
- Author
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Bonkowski A, Wolf MJ, Wu J, Parker SC, Klein A, and De Souza RA
- Abstract
Exsolution has emerged as an outstanding route for producing oxide-supported metal nanoparticles. For AB O
3 -perovskite oxides, various late transition-metal cations can be substituted into the lattice under oxidizing conditions and exsolved as metal nanoparticles after reduction. A consistent and comprehensive description of the point-defect thermodynamics and kinetics of this phenomenon is lacking, however. Herein, supported by hybrid density-functional-theory calculations, we propose a single model that explains diverse experimental observations, such as why substituent transition-metal cations (but not host cations) exsolve from perovskite oxides upon reduction; why different substituent transition-metal cations exsolve under different conditions; why the metal nanoparticles are embedded in the surface; why exsolution occurs surprisingly rapidly at relatively low temperatures; and why the reincorporation of exsolved species involves far longer times and much higher temperatures. Our model's foundation is that the substituent transition-metal cations are reduced to neutral species within the perovskite lattice as the Fermi level is shifted upward within the bandgap upon sample reduction. The calculations also indicate unconventional influences of oxygen vacancies and A -site vacancies. Our model thus provides a fundamental basis for improving existing, and creating new, exsolution-generated catalysts.- Published
- 2024
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37. Solitary Angiokeratoma in the Oral Cavity: A Critical Literature Review and Report of a New Case.
- Author
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de Lima-Souza RA, Kimura TC, Scarini JF, Lavareze L, Figueiredo-Maciel T, Chone CT, Egal ESA, Altemani A, and Mariano FV
- Abstract
This study aimed to perform an integrative review of solitary angiokeratomas cases in the oral cavity and to report a new case in a 39-year-old man. A modified PECOS strategy was used using PubMed, Embase, Scopus, Web of Science databases, and the reference lists of the selected articles. Case reports of oral solitary angiokeratoma published in English, Portuguese, and Spanish languages with histopathological diagnosis without the presence of systemic disorders were included. Of the 51 articles identified, 18 met the eligibility criteria. Solitary angiokeratomas have a slight male predilection, with a peak incidence in the fourth decade of life. The tongue was the most common localization (77.7%), followed by buccal mucosa (11.1%), labial mucosa (5.6%), and tonsillar pillar (5.6%). The granulomatous appearance was the most frequent clinical aspect. Surgical excision was implemented in 94.4% of the cases. The lesion presented a good prognosis, with no recurrence in 3 to 24 months. In summary, solitary angiokeratoma is a rare lesion in the oral cavity. The professional making the oral diagnosis should be familiar with the clinical manifestation of angiokeratoma and be prepared to consider it in the differential diagnosis of pigmented lesions since these lesions may be part of systemic disorders., Supplementary Information: The online version contains supplementary material available at 10.1007/s12070-024-04631-w., Competing Interests: Competing InterestsThe authors declare no competing interests., (© Association of Otolaryngologists of India 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)
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- 2024
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38. Potential role of the Eph/ephrin system in colorectal cancer: emerging druggable molecular targets.
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Scarini JF, Gonçalves MWA, de Lima-Souza RA, Lavareze L, de Carvalho Kimura T, Yang CC, Altemani A, Mariano FV, Soares HP, Fillmore GC, and Egal ESA
- Abstract
The Eph/ephrin system regulates many developmental processes and adult tissue homeostasis. In colorectal cancer (CRC), it is involved in different processes including tumorigenesis, tumor angiogenesis, metastasis development, and cancer stem cell regeneration. However, conflicting data regarding Eph receptors in CRC, especially in its putative role as an oncogene or a suppressor gene, make the precise role of Eph-ephrin interaction confusing in CRC development. In this review, we provide an overview of the literature and highlight evidence that collaborates with these ambiguous roles of the Eph/ephrin system in CRC, as well as the molecular findings that represent promising therapeutic targets., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Scarini, Gonçalves, de Lima-Souza, Lavareze, de Carvalho Kimura, Yang, Altemani, Mariano, Soares, Fillmore and Egal.)
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- 2024
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39. How space-charge behaviour at grain boundaries in electroceramic oxides is modified by two restricted equilibria.
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Usler AL, Ketter F, and De Souza RA
- Abstract
Determining the space-charge potential at grain boundaries in oxides by various experimental methods bears the promise of providing a comprehensive, quantitative description of interfacial defect chemistry. In this study, we draw attention to the problem of unifying data measured in different temperature ranges. We focus on unifying data from elevated-temperature electrical methods, such as impedance spectroscopy and current-voltage measurements, with data from room-temperature imaging techniques, such as Scanning Probe Microscopy (SPM), Transmission Electron Microscopy (TEM), and Atom Probe Tomography (APT). By means of continuum simulations, we calculate the space-charge potential Φ
0 at grain boundaries in the model electroceramic oxide acceptor-doped SrTiO3 , taking into account, first, a restricted equilibrium that leads to frozen-in acceptor-dopant profiles, and subsequently, a restricted equilibrium that leads to frozen-in bulk oxygen-vacancy concentrations. Our results indicate non-trivial differences between experimental values of Φ0 obtained from electrical and from imaging methods, differences that arise from the different measurement temperatures and that are aggravated by the restricted equilibria. We also show that grain-boundary widths determined from elemental acceptor-cation profiles will not, on principle, agree with the electrical width extracted from impedance spectroscopy data.- Published
- 2024
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40. Malignant phenotype acquisition in pleomorphic adenoma: An exclusive proteins analysis.
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de Lima-Souza RA, Scarini JF, Lavareze L, Domingues RR, Paes Leme AF, Egal ESA, Altemani A, and Mariano FV
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- Humans, Phenotype, Adenoma, Pleomorphic genetics, Adenoma, Pleomorphic metabolism, Adenoma, Pleomorphic pathology, Salivary Gland Neoplasms genetics, Salivary Gland Neoplasms pathology
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- 2024
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41. Dynamic Role of miRNAs in Salivary Gland Carcinomas: From Biomarkers to Therapeutic Targets.
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Kimura TC, de Lima-Souza RA, Maciel TF, Kowalski LP, Coutinho-Camillo CM, Egal ESA, Altemani A, and Mariano FV
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- Humans, Biomarkers, Carcinogenesis genetics, Cell Transformation, Neoplastic, Prognosis, Salivary Glands metabolism, Biomarkers, Tumor genetics, MicroRNAs genetics, Salivary Gland Neoplasms pathology, Carcinoma
- Abstract
Background: Salivary gland carcinomas (SGCs) are a rare group of malignant neoplasms of the head and neck region. MicroRNAs (miRNAs) are a class of small non-coding RNAs that have been associated with the control biological process and oncogenic mechanism by the regulation of gene expression at the post-transcriptional level. Recent evidence has suggested that miRNA expression may play a role in the tumorigenesis and carcinogenesis process in SGCs., Methods: This review provides a comprehensive literature review of the role of miRNAs expression in SGCs focusing on the diagnostic, prognostic, and therapeutic applications., Results: In this review, numerous dysregulated miRNAs have demonstrated an oncogenic and suppressor role in SGCs., Conclusion: In the future, these miRNAs may eventually constitute useful diagnostic and prognostic biomarkers that may lead to a better understanding of SGCs oncogenesis. Additionally, the development of therapeutic agents based on miRNAs may be a promising target in SGC treatment., (© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2024
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42. One Stone, Two Birds: Using High Electric Fields to Enhance the Mobility and the Concentration of Point Defects in Ion-Conducting Solids.
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Kemp D and De Souza RA
- Abstract
Improving the ionic conductivity of outstanding, composition-optimized crystalline electrolytes is a major challenge. Achieving increases of orders of magnitude requires, conceivably, highly nonlinear effects. One known possibility is the use of high electric fields to increase point-defect mobility. In this study, we investigate quantitatively a second possibility that high electric fields can increase substantially point-defect concentrations. As a model system, we take a pyrochlore oxide (La
2 Zr2 O7 ) for its combination of structural vacancies and dominant anti-Frenkel disorder; we perform molecular-dynamics simulations with many-body potentials as a function of temperature and applied electric field. Results within the linear regime yield the activation enthalpies and entropies of oxygen-vacancy and oxygen-interstitial migration, and from three independent methods, the enthalpy and entropy of anti-Frenkel disorder. Transport data for the nonlinear regime are consistent with field-enhanced defect concentrations and defect mobilities. A route for separating the two effects is shown, and an analytical expression for the quantitative prediction of the field-dependent anti-Frenkel equilibrium constant is derived. In summary, we demonstrate that the one stone of a nonlinear driving force can be used to hit two birds of defect behavior.- Published
- 2024
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43. Reported physical examination methods for screening of oral cancer and oral potentially malignant disorders: a systematic review.
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Louredo BVR, de Lima-Souza RA, Pérez-de-Oliveira ME, Warnakulasuriya S, Kerr AR, Kowalski LP, Hunter KD, Prado-Ribeiro AC, Vargas PA, and Santos-Silva ARD
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- Humans, Early Detection of Cancer methods, Precancerous Conditions diagnosis, Precancerous Conditions pathology, Mouth Neoplasms diagnosis, Physical Examination, Mass Screening methods
- Abstract
Objective: This systematic review aimed to describe the method followed during physical examination and the anatomical structures of the head and neck assessed in screening for oral cancer and oral potentially malignant disorders (OPMDs)., Study Design: An extensive literature search was carried out using MEDLINE/PubMed, EMBASE, Scopus, LILACS, Web of Science, Cochrane databases, and gray literature. The risk of bias was available in all papers included., Results: Of 9,688 records identified, 27 were included in this review, reporting data from 356,250 individuals screened and distributed across 11 countries. Most of these (n = 19) were based on 1 round of screening conducted by a dental professional or other health care workers. Most screening programs included visual inspection and palpation of the lips, oral cavity, and the most visible oropharyngeal sites, but the descriptions reported were imprecise. Additional inspection and palpation of the neck (submental, submandibular, cervical, and supraclavicular regions) to assess for the presence of swellings and any palpable neck nodes were also performed in 15 programs., Conclusion: In conclusion, there was considerable heterogeneity in the method of physical examination in screening programs for oral cancer and OPMDs among the included studies., Competing Interests: Declaration of interest None., (Copyright © 2023 Elsevier Inc. All rights reserved.)
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- 2024
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44. Clinical and epidemiological profile of burning mouth syndrome patients following the International Headache Society classification: a systematic review and meta-analysis.
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de Lima-Souza RA, Pérez-de-Oliveira ME, Normando AGC, Louredo BVR, Mariano FV, Farag AM, and Santos-Silva AR
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- Humans, Prevalence, Burning Mouth Syndrome epidemiology
- Abstract
Objective: This systematic review aimed to determine the clinical and epidemiologic profile of patients with burning mouth syndrome (BMS) following the current classification of the International Headache Society (IHS)-the International Classification of Headache Disorders (ICHD-3) and the International Classification of Orofacial Pain (ICOP)., Study Design: This review followed the Preferred Reporting Items for Systematic Reviews and Meta-Analyses checklist and involved a comprehensive search on PubMed, Scopus, EMBASE, Web of Science, LILACS, and the gray literature., Results: Of the 4,252 studies identified, 41 were included. In general, there were no differences between the clinical and epidemiologic profiles of patients with BMS classified based on ICHD-3 or ICOP. Studies were pooled in meta-analyses and showed a significant prevalence of female patients between the sixth and seventh decade of life. The burning sensation and the tongue were the most prevalent descriptors and affected location. Significant associations were demonstrated between BMS and anxiety (P = .0006), depression (P = .004), and poor oral hygiene (P = .00001)., Conclusions: Under the existing contemporary classification systems, patients with BMS were found to be mostly females in the sixth and seventh decade of life with a burning sensation on the tongue. Experiencing depression and anxiety was a commonly existing comorbidity., (Copyright © 2023 Elsevier Inc. All rights reserved.)
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- 2024
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45. Concentration of lipids, cholesterol, and fatty acid profile in chicken breast meat affected by wooden breast myopathy frozen for up to 12 mo.
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Villegas-Cayllahua EA, Dutra DR, de Oliveira RF, Pereira MR, Cavalcanti ÉNF, Ferrari FB, de Souza RA, de Almeida Fidelis H, Giampietro-Ganeco A, de Souza PA, de Mello JLM, and Borba H
- Subjects
- Animals, Male, Chickens, Freezing, Fatty Acids, Unsaturated, Cholesterol analysis, Meat analysis, Fatty Acids analysis, Muscular Diseases etiology, Muscular Diseases veterinary
- Abstract
The aim of this study was to examine the effects of frozen storage for 12 mo on the concentrations of lipids and cholesterol and fatty acid profile of wooden chicken breast meat. A total of 120 samples of chicken breasts were selected, according to the degree of "wooden breast" myopathy ["severe," "moderate," and "normal" (absence of myopathy)], from male chickens slaughtered at 42 d of age, from Cobb 500 strain. Part of the samples (n = 20/grade of severity) were evaluated on the day of collection and the remainder were packaged, frozen and stored at -18°C for up to 12 mo. At the beginning (collection day) and at the end of the proposed freezing period (12 mo), analyses of lipid, cholesterol, and fatty acid profile were carried out. Percentage of saturated (SFA), monounsaturated (MUFA), and polyunsaturated (PUFA) fatty acids were evaluated. Meats affected by wooden breast myopathy had lower levels of PUFA that exert beneficial effects on health, such as DHA, EPA and ARA, and this profile is impaired by prolonged storage (12 mo), which results in important nutritional losses for the consumer., (Copyright © 2023. Published by Elsevier Inc.)
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- 2024
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46. Hematopoietic colony-stimulating factors in head and neck cancers: Recent advances and therapeutic challenges.
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Vieira GS, Kimura TC, Scarini JF, de Lima-Souza RA, Lavareze L, Emerick C, Gonçalves MT, Damas II, Figueiredo-Maciel T, Sales de Sá R, Aquino IG, Gonçalves de Paiva JP, Fernandes PM, Gonçalves MWA, Kowalski LP, Altemani A, Fillmore GC, Mariano FV, and Egal ESA
- Subjects
- Humans, Interleukin-3, Granulocyte Colony-Stimulating Factor therapeutic use, Cytokines, Granulocytes, Tumor Microenvironment, Colony-Stimulating Factors, Head and Neck Neoplasms drug therapy
- Abstract
Colony-stimulating factors (CSFs) are key cytokines responsible for the production, maturation, and mobilization of the granulocytic and macrophage lineages from the bone marrow, which have been gaining attention for playing pro- and/or anti-tumorigenic roles in cancer. Head and neck cancers (HNCs) represent a group of heterogeneous neoplasms with high morbidity and mortality worldwide. Treatment for HNCs is still limited even with the advancements in cancer immunotherapy. Novel treatments for patients with recurrent and metastatic HNCs are urgently needed. This article provides an in-depth review of the role of hematopoietic cytokines such as granulocyte colony-stimulating factor (G-CSF), granulocyte-macrophage colony-stimulating factor (GM-CSF), macrophage colony-stimulating factor (M-CSF), and interleukin-3 (IL-3; also known as multi-CSF) in the HNCs tumor microenvironment. We have reviewed current results from clinical trials using CSFs as adjuvant therapy to treat HNCs patients, and also clinical findings reported to date on the therapeutic application of CSFs toxicities arising from chemoradiotherapy., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved.)
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- 2024
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47. Clinical and epidemiological features of mpox in a Brazilian reference center for HIV and sexually transmitted infections: A cross-sectional study.
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Costa AF, Rocha SQ, Fonsi M, Nogueira RS, Kalichman AO, Madruga JVR, Gianna MC, Souza RA, Rodrigues R, Tayra A, Ramos LR, da Silva RJC, Sartori AMC, Prado WDA, Abbud A, and Tancredi MV
- Abstract
Background: The 2022 mpox outbreak has affected disproportionately people living with HIV (PLWH) and pre-exposure prophylaxis (PrEP) users., Methods: We conducted a cross-sectional study to evaluate factors associated with laboratory diagnosis of mpox among suspected cases, and access differences between PrEP users and PLWH with confirmed diagnostic., Results: 394 mpox suspected cases were analyzed, 309 (78.4%) confirmed. Most patients with mpox were PLWH (54.4%) and 99 (32%) PrEP users. Mpox cases were likely to be between 25 and 39 years old (aOR=2.8; p=0.042), men who have sex with men/bisexual or transgender women (aOR=17.2; p< 0.001) and to have fever (aOR=4.7; p< 0.001), adenomegaly (aOR=7.2; p< 0.001) and multiple vesicular lesions (aOR=4.2; p< 0.001). Comparing PrEP users to PLWH with confirmed mpox, PrEP users had lesions predominantly with exclusive genital involvement (p=0.016); while PLWH had higher extragenital involvement (p=0.018)., Conclusions: PrEP users and PLWHA were the main epidemiological groups in our cohort. Recognizing the differences between vulnerable populations can contribute to the development public policies to control mpox in settings with reduced access to vaccines., Competing Interests: All authors declare no competing interests., (© 2023 The Authors.)
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- 2023
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48. Stent composition and immune response after long-term coronary angioplasty.
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Sant'Anna VAR, Barbosa AHP, Souza RA, Sousa JMA, Monfardini F, Gidlund M, and Fonseca HAR
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- Female, Humans, Male, Autoantibodies, Immunity, Metals, Pilot Projects, Risk Factors, Stents, Treatment Outcome, Middle Aged, Angioplasty, Balloon, Coronary, Drug-Eluting Stents, Percutaneous Coronary Intervention
- Abstract
Background: There are limited data about the influence of stent composition on immune responses after percutaneous coronary intervention (PCI)., Objective: The aim was to compare the effects of PCI with conventional cobalt-chromium bare metal stent (BMS) and drug-eluting stent (DES) implantation on the modulation of humoral and cellular immune responses., Methods: A randomised, single-centre, open pilot study involving patients with stable coronary artery disease eligible for PCI was performed. Blood samples were collected from the peripheral artery (PA) and the coronary sinus (CS) at baseline and 40 weeks following PCI. IgM and IgG autoantibodies (Abs), anti-oxLDL and anti-ApoB-D, as well as cytokine levels were evaluated by enzyme-linked immunosorbent assay., Results: A total of 30 patients of 60 years mean age were included, 68% of whom were men. At the nine-month follow-up, a modulation in the levels of cytokines and autoantibodies was observed in both stent type groups. However, no difference was observed in the modulation of these markers between stents., Conclusion: The stent type promotes modulations in cellular and humoral immune responses in the long-term, with differences in the magnitude of effects in specific immune responses.
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- 2023
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49. Physical, chemical, and microbiological evaluation of sausages produced with chicken meat affected by deep pectoral myopathy.
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Francelino MC, Pereira MR, Cavalcanti ÉNF, Dias AVL, Villegas-Cayllahua EA, Dutra DR, Ferrari FB, Rodrigues RA, de Souza RA, Giampietro-Ganeco A, de Souza PA, de Oliveira RF, and Borba H
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- Animals, Brazil, Meat analysis, Pectoralis Muscles physiology, Water analysis, Chickens physiology, Muscular Diseases etiology, Muscular Diseases veterinary
- Abstract
The purpose of the present study was to characterize the chemical composition, lipid oxidation, and physical characteristics of fresh sausages produced with meat from the pectoralis major muscle affected by deep pectoral myopathy. For the characterization of myopathy, samples were collected from broiler chickens slaughtered between 42- and 46-days old in a slaughterhouse in the state of São Paulo. The experiment consisted of samples from pectoralis major muscle of birds affected or not by DPM (normal-absence of myopathy and DPM category 3-progressive degeneration of the pectoralis minor with a greenish appearance). After classification of the samples, a part of raw products with the pectoralis minor removed, was submitted to microbiological and physical analyses for the characterization of DPM. Afterward, only the pectoralis major muscle was used to manufacture fresh sausages and 2 groups were established. The evaluated parameters were: color, pH, water-holding capacity (WHC), cooking loss (CL), shear force (SF), water activity (Aw), and chemical composition. Meat pH was higher (P < 0.05) in meats with DPM, however, WHC values were lower (71.92%), which made CL value increase (25.31%). In addition, the coloring increased and the technological characteristics of raw breasts were less favorable with the presence of DPM. All fresh sausages' color (except a* higher control group), pH, and Aw values were higher in DPM group. No effect on SF values was observed between fresh sausages. In chemical composition, only protein content increased in fresh sausages with DPM. Microbiological analyses did not indicate bacterial contamination of raw samples and fresh sausages. Data obtained in the present study suggest fresh sausages produced with breasts affected by DPM are a viable alternative and may confer more favorable qualitative characteristics to sausages than the raw marketed meat., (Copyright © 2023. Published by Elsevier Inc.)
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- 2023
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50. Two new species of Endecous Saussure, 1878 (Orthoptera: Grylloidea: Phalangopsidae) from caves in central-western Brazil, with the proposition of a new subgenus to accommodate E. vitreus Bolfarini & Campos, 2023.
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Carvalho PHM, Castro-Souza RA, and Ferreira RL
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- Male, Animals, Brazil, Animal Distribution, Orthoptera, Gryllidae
- Abstract
The genus Endecous (Orthoptera, Grylloidea, Phalangopsidae) encompasses over 20 species, grouped into four subgenera: E. (Endecous), E. (Pedroecous), E. (Notendecous), and E. (Ramalhoecous). In this study, we present the description of two novel species belonging to the subgenus Endecous (Endecous) Saussure, 1878 (Phalangopsidae) discovered in caves located within the Serra da Bodoquena region of Mato Grosso do Sul state, Brazil. The descriptions are based on the distinguishing male genitalia characteristics, among other traits. Furthermore, we introduce a new subgenus, namely Endecous (Bodoquenaecous), specifically created to accommodate the recently discovered species E. vitreus, also found in caves within the same area. Initially, E. vitreus was placed under the subgenus Endecous; however, due to its numerous distinct traits, the establishment of a new subgenus became justified. In this study, we also introduce the first pictorial key for the subgenera within the genus Endecous. Additionally, we briefly discuss observed troglomorphic adaptations in species belonging to this genus. Finally, comprehensive ecological observations and conservation status assessments are provided for both newly described species, as well as for E. vitreus.
- Published
- 2023
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