Search

Tree covering is a technique for decomposing a tree into smaller-sized trees with desirable properties, and has been employed in various succinct data structures. However, significant hurdles stand in the way of a practical implementation of tree covering: a lot of pointers are used to maintain the tree-covering hierarchy and many indices for tree navigational queries consume theoretically negligible yet practically vast space. To tackle these problems, we propose a simple representation of tree covering using a balanced parenthesis representation. The key to the proposal is the observation that every micro tree splits into at most two intervals on the BP representation. Utilizing the representation, we propose several data structures that represent a tree and its tree cover, which consequently allow micro tree compression with arbitrary coding and efficient tree navigational queries. We also applied our data structure to average-case optimal RMQ by Munro et al.~[ESA 2021] and implemented the RMQ data structure. Our RMQ data structures spend less than $2n$ bits and process queries in a practical time on several settings of the performance evaluation, reducing the gap between theoretical space complexity and actual space consumption. We also implement tree navigational operations while using the same amount of space as the RMQ data structures. We believe the representation can be widely utilized for designing practically memory-efficient data structures based on tree covering., Comment: To appear in ESA 2024

We prove algorithmic results showing that a number of natural parameterized problems are in the restricted-space parameterized classes Para-L and FPT+XL. The first class comprises problems solvable in f(k) n^{O(1)} time using g(k) + O(log n)) bits of space (k is the parameter and n is the input size; f and g are computable functions). The second class comprises problems solvable under the same time bound, but using g(k) log n bits of space instead. Earlier work on these classes has focused largely on their structural aspects and their relationships with various other classes. We complement this with Para-L and FPT+XL algorithms for a restriction of Hitting Set, some graph deletion problems where the target class has an infinite forbidden set characterization, a number of problems parameterized by vertex cover number, and Feedback Vertex Set.

We design succinct encodings of {\it series-parallel, block-cactus} and {\it 3-leaf power} graphs while supporting the basic navigational queries such as degree, adjacency and neighborhood {\it optimally} in the RAM model with logarithmic word size. One salient feature of our representation is that it can achieve optimal space even though the exact space lower bound for these graph classes is not known. For these graph classes, we provide succinct data structures with optimal query support for the first time in the literature. For series-parallel multigraphs, our work also extends the works of Uno et al. (Disc. Math. Alg. and Appl., 2013) and Blelloch and Farzan (CPM, 2010) to produce optimal bounds.

We consider the problem of designing succinct navigational oracles, i.e., succinct data structures supporting basic navigational queries such as degree, adjacency, and neighborhood efficiently for intersection graphs on a circle, which include graph classes such as {\it circle graphs}, {\it $k$-polygon-circle graphs}, {\it circle-trapezoid graphs}, {\it trapezoid graphs}. The degree query reports the number of incident edges to a given vertex, the adjacency query asks if there is an edge between two given vertices, and the neighborhood query enumerates all the neighbors of a given vertex. We first prove a general lower bound for these intersection graph classes and then present a uniform approach that lets us obtain matching lower and upper bounds for representing each of these graph classes. More specifically, our lower bound proofs use a unified technique to produce tight bounds for all these classes, and this is followed by our data structures which are also obtained from a unified representation method to achieve succinctness for each class. In addition, we prove a lower bound of space for representing {\it trapezoid} graphs and give a succinct navigational oracle for this class of graphs.

We consider the range mode problem where given a sequence and a query range in it, we want to find items with maximum frequency in the range. We give time- and space- efficient algorithms for this problem. Our algorithms are efficient for small maximum frequency cases. We also consider a natural generalization of the problem: the range mode enumeration problem, for which there has been no known efficient algorithms. Our algorithms have query time complexities which is linear to the output size plus small terms.

Deterministic finite automata are one of the simplest and most practical models of computation studied in automata theory. Their conceptual extension is the non-deterministic finite automata which also have plenty of applications. In this article, we study these models through the lens of succinct data structures where our ultimate goal is to encode these mathematical objects using information-theoretically optimal number of bits along with supporting queries on them efficiently. Towards this goal, we first design a succinct data structure for representing any deterministic finite automaton $\mathcal{D}$ having $n$ states over a $\sigma$-letter alphabet $\Sigma$ using $(\sigma-1) n\log n + O(n \log \sigma)$ bits of space, which can determine, given an input string $x$ over $\Sigma$, whether $\mathcal{D}$ accepts $x$ in $O(|x| \log \sigma)$ time, using constant words of working space. When the input deterministic finite automaton is acyclic, not only we can improve the above space-bound significantly to $(\sigma -1) (n-1)\log n+ 3n + O(\log^2 \sigma) + o(n)$ bits, we also obtain optimal query time for string acceptance checking. More specifically, using our succinct representation, we can check if a given input string $x$ can be accepted by the acyclic deterministic finite automaton using time proportional to the length of $x$, hence, the optimal query time. We also exhibit a succinct data structure for representing a non-deterministic finite automaton $\mathcal{N}$ having $n$ states over a $\sigma$-letter alphabet $\Sigma$ using $\sigma n^2+n$ bits of space, such that given an input string $x$, we can decide whether $\mathcal{N}$ accepts $x$ efficiently in $O(n^2|x|)$ time. Finally, we also provide time and space-efficient algorithms for performing several standard operations such as union, intersection, and complement on the languages accepted by deterministic finite automata.

We present linear time {\it in-place} algorithms for several basic and fundamental graph problems including the well-known graph search methods (like depth-first search, breadth-first search, maximum cardinality search), connectivity problems (like biconnectivity, $2$-edge connectivity), decomposition problem (like chain decomposition) among various others, improving the running time (by polynomial multiplicative factor) of the recent results of Chakraborty et al. [ESA, 2018] who designed $O(n^3 \lg n)$ time in-place algorithms for a strict subset of the above mentioned problems. The running times of all our algorithms are essentially optimal as they run in linear time. One of the main ideas behind obtaining these algorithms is the detection and careful exploitation of sortedness present in the input representation for any graph without loss of generality. This observation alone is powerful enough to design some basic linear time in-place algorithms, but more non-trivial graph problems require extra techniques which, we believe, may find other applications while designing in-place algorithms for different graph problems in the future.

Continuing the recent trend, in this article we design several space-efficient algorithms for two well-known graph search methods. Both these search methods share the same name {\it breadth-depth search} (henceforth {\sf BDS}), although they work entirely in different fashion. The classical implementation for these graph search methods takes $O(m+n)$ time and $O(n \lg n)$ bits of space in the standard word RAM model (with word size being $\Theta(\lg n)$ bits), where $m$ and $n$ denotes the number of edges and vertices of the input graph respectively. Our goal here is to beat the space bound of the classical implementations, and design $o(n \lg n)$ space algorithms for these search methods by paying little to no penalty in the running time. Note that our space bounds (i.e., with $o(n \lg n)$ bits of space) do not even allow us to explicitly store the required information to implement the classical algorithms, yet our algorithms visits and reports all the vertices of the input graph in correct order., Comment: 12 pages, This work will appear in FCT 2019

We consider the problem of designing succinct data structures for interval graphs with $n$ vertices while supporting degree, adjacency, neighborhood and shortest path queries in optimal time in the $\Theta(\log n)$-bit word RAM model. The degree query reports the number of incident edges to a given vertex in constant time, the adjacency query returns true if there is an edge between two vertices in constant time, the neighborhood query reports the set of all adjacent vertices in time proportional to the degree of the queried vertex, and the shortest path query returns a shortest path in time proportional to its length, thus the running times of these queries are optimal. Towards showing succinctness, we first show that at least $n\log{n} - 2n\log\log n - O(n)$ bits are necessary to represent any unlabeled interval graph $G$ with $n$ vertices, answering an open problem of Yang and Pippenger [Proc. Amer. Math. Soc. 2017]. This is augmented by a data structure of size $n\log{n} +O(n)$ bits while supporting not only the aforementioned queries optimally but also capable of executing various combinatorial algorithms (like proper coloring, maximum independent set etc.) on the input interval graph efficiently. Finally, we extend our ideas to other variants of interval graphs, for example, proper/unit interval graphs, k-proper and k-improper interval graphs, and circular-arc graphs, and design succinct/compact data structures for these graph classes as well along with supporting queries on them efficiently.

We consider the problem of encoding two-dimensional arrays, whose elements come from a total order, for answering \topk{} queries. The aim is to obtain encodings that use space close to the information-theoretic lower bound, which can be constructed efficiently. For an $m \times n$ array, with $m \le n$, we first propose an encoding for answering 1-sided \topk{} queries, whose query range is restricted to $[1 \dots m][1 \dots a]$, for $1 \le a \le n$. Next, we propose an encoding for answering for the general (4-sided) \topk{} queries that takes $(m\lg{{(k+1)n \choose n}}+2nm(m-1)+o(n))$ bits, which generalizes the \textit{joint Cartesian tree} of Golin et al. [TCS 2016]. Compared with trivial $O(nm\lg{n})$-bit encoding, our encoding takes less space when $m = o(\lg{n})$. In addition to the upper bound results for the encodings, we also give lower bounds on encodings for answering $1$ and $4$-sided \topk{} queries, which show that our upper bound results are almost optimal.

Indexing of static and dynamic sets is fundamental to a large set of applications such as information retrieval and caching. Denoting the characteristic vector of the set by B, we consider the problem of encoding sets and multisets to support approximate versions of the operations rank(i) (i.e., computing sum_{j <= i}B[j]) and select(i) (i.e., finding min{p | rank(p) >= i}) queries. We study multiple types of approximations (allowing an error in the query or the result) and present lower bounds and succinct data structures for several variants of the problem. We also extend our model to sliding windows, in which we process a stream of elements and compute suffix sums. This is a generalization of the window summation problem that allows the user to specify the window size at query time. Here, we provide an algorithm that supports updates and queries in constant time while requiring just (1+o(1)) factor more space than the fixed-window summation algorithms., Comment: To appear in ISAAC 2018

This short note provides space-efficient linear time algorithms for computing bridges, topological sorting, and strongly connected components improving on several recent results of Elmasry et al. [STACS'15], Banerjee et al. [COCOON'16] and Chakraborty et al. [ISAAC'16]. En route, we also provide another DFS implementation with weaker input graph representation assumption without compromising on the time and space bounds of the earlier results of Banerjee et al. [COCOON'16] and Kammer et al. [MFCS'16]., Comment: This short article appeared in CTW 2017

Read-only memory model is a classical model of computation to study time-space tradeoffs of algorithms. One of the classical results on the ROM model is that any sorting algorithm that uses O(s) words of extra space requires $\Omega (n^2/s)$ comparisons for $ \lg n \leq s \leq n/\lg n$ and the bound has also been recently matched by an algorithm. However, if we relax the model (from ROM), we do have sorting algorithms (say Heapsort) that can sort using $O(n \lg n)$ comparisons using $O(\lg n)$ bits of extra space, even keeping a permutation of the given input sequence at any point of time during the algorithm. We address similar questions for graph algorithms. We show that a simple natural relaxation of ROM model allows us to implement fundamental graph search methods like BFS and DFS more space efficiently than in ROM. By simply allowing elements in the adjacency list of a vertex to be permuted, we show that, on an undirected or directed connected graph $G$ having $n$ vertices and $m$ edges, the vertices of $G$ can be output in a DFS or BFS order using $O(\lg n)$ bits of extra space and $O(n^3 \lg n)$ time. Thus we obtain similar bounds for reachability and shortest path distance (both for undirected and directed graphs). With a little more (but still polynomial) time, we can also output vertices in the lex-DFS order. As reachability in directed graphs and shortest path distance are NL-complete, and lex-DFS is P-complete, our results show that our model is more powerful than ROM if L $\neq$ P. En route, we also introduce and develop algorithms for another relaxation of ROM where the adjacency lists of the vertices are circular lists and we can modify only the heads of the lists. All our algorithms are simple but quite subtle, and we believe that these models are practical enough to spur interest for other graph problems in these models.

Given an array of $n$ elements from a total order, we propose encodings that support various range queries (range minimum, range maximum and their variants), and previous and next smaller/larger value queries. When query time is not of concern, we obtain a $4.088n + o(n)$-bit encoding that supports all these queries. For the case when we need to support all these queries in constant time, we give an encoding that takes $4.585n + o(n)$ bits, where $n$ is the length of input array. This improves the $5.08n+o(n)$-bit encoding obtained by encoding the colored $2d$-Min and Max heaps proposed by Fischer~[TCS, 2011]. We first extend the original DFUDS [Algorithmica, 2005] encoding of the colored 2d-Min (Max) heap that supports the queries in constant time. Then, we combine the extended DFUDS of $2d$-Min heap and $2d$-Max heap using the Min-Max encoding of Gawrychowski and Nicholson [ICALP, 2015] with some modifications. We also obtain encodings that take lesser space and support a subset of these queries., Comment: 15 pages, 4 figures (with added details in Figure 3 wrt the journal version)

Karp et al. (1988) described Deferred Data Structures for Multisets as "lazy" data structures which partially sort data to support online rank and select queries, with the minimum amount of work in the worst case over instances of size $n$ and number of queries $q$ fixed (i.e., the query size). Barbay et al. (2016) refined this approach to take advantage of the gaps between the positions hit by the queries (i.e., the structure in the queries). We develop new techniques in order to further refine this approach and to take advantage all at once of the structure (i.e., the multiplicities of the elements), the local order (i.e., the number and sizes of runs) and the global order (i.e., the number and positions of existing pivots) in the input; and of the structure and order in the sequence of queries. Our main result is a synergistic deferred data structure which performs much better on large classes of instances, while performing always asymptotically as good as previous solutions. As intermediate results, we describe two new synergistic sorting algorithms, which take advantage of the structure and order (local and global) in the input, improving upon previous results which take advantage only of the structure (Munro and Spira 1979) or of the local order (Takaoka 1997) in the input; and one new multiselection algorithm which takes advantage of not only the order and structure in the input, but also of the structure in the queries. We described two compressed data structures to represent a multiset taking advantage of both the local order and structure, while supporting the operators rank and select on the multiset., Comment: 18 pages

We consider space efficient implementations of some classical applications of DFS including the problem of testing biconnectivity and $2$-edge connectivity, finding cut vertices and cut edges, computing chain decomposition and $st$-numbering of a given undirected graph $G$ on $n$ vertices and $m$ edges. Classical algorithms for them typically use DFS and some $\Omega (\lg n)$ bits\footnote{We use $\lg$ to denote logarithm to the base $2$.} of information at each vertex. Building on a recent $O(n)$-bits implementation of DFS due to Elmasry et al. (STACS 2015) we provide $O(n)$-bit implementations for all these applications of DFS. Our algorithms take $O(m \lg^c n \lg\lg n)$ time for some small constant $c$ (where $c \leq 2$). Central to our implementation is a succinct representation of the DFS tree and a space efficient partitioning of the DFS tree into connected subtrees, which maybe of independent interest for designing other space efficient graph algorithms., Comment: 18 pages, 4 figures, Preliminary version of this article appeared in the proceedings of 27th ISAAC 2016, Journal version is accepted to JCSS and will soon appear

Recent work by Elmasry et al. (STACS 2015) and Asano et al. (ISAAC 2014), reconsidered classical fundamental graph algorithms focusing on improving the space complexity. We continue this line of work focusing on space. Our first result is a simple data structure that can maintain any subset $S$ of a universe of $n$ elements using $n+o(n)$ bits and support in constant time, apart from the standard insert, delete and membership queries, the operation {\it findany} that finds and returns any element of the set (or outputs that the set is empty). Using this we give a BFS implementation that takes $O(m+n)$ time using at most $2n+o(n)$ bits. Later, we further improve the space requirement of BFS to at most $1.585n + o(n)$ bits. We demonstrate the use of our data structure by developing another data structure using it that can represent a sequence of $n$ non-negative integers $x_1, x_2, \ldots x_n$ using at most $\sum_{i=1}^n x_i + 2n + o(\sum_{i=1}^n x_i+n)$ bits and, in constant time, determine whether the $i$-th element is $0$ or decrement it otherwise. We also discuss an algorithm for finding a minimum weight spanning tree of a weighted undirected graph using at most $n+o(n)$ bits. We also provide an implementation for DFS that takes $O(m+n)$ time and $O(n \lg(m/n))$ bits. Using this DFS algorithm and other careful implementations, we can test biconnectivity, 2-edge connectivity, and determine cut vertices, bridges etc among others, essentially within the same time and space bounds required for DFS. These improve the space required for earlier implementations from $\Omega (n\lg n)$ bits., Comment: A preliminary version of this paper appears in the proceedings of COCOON 2016

We observe that a standard transformation between \emph{ordinal} trees (arbitrary rooted trees with ordered children) and binary trees leads to interesting succinct binary tree representations. There are four symmetric versions of these transformations. Via these transformations we get four succinct representations of $n$-node binary trees that use $2n + n/(\log n)^{O(1)}$ bits and support (among other operations) navigation, inorder numbering, one of pre- or post-order numbering, subtree size and lowest common ancestor (LCA) queries. The ability to support inorder numbering is crucial for the well-known range-minimum query (RMQ) problem on an array $A$ of $n$ ordered values. While this functionality, and more, is also supported in $O(1)$ time using $2n + o(n)$ bits by Davoodi et al.'s (\emph{Phil. Trans. Royal Soc. A} \textbf{372} (2014)) extension of a representation by Farzan and Munro (\emph{Algorithmica} \textbf{6} (2014)), their \emph{redundancy}, or the $o(n)$ term, is much larger, and their approach may not be suitable for practical implementations. One of these transformations is related to the Zaks' sequence (S.~Zaks, \emph{Theor. Comput. Sci.} \textbf{10} (1980)) for encoding binary trees, and we thus provide the first succinct binary tree representation based on Zaks' sequence. Another of these transformations is equivalent to Fischer and Heun's (\emph{SIAM J. Comput.} \textbf{40} (2011)) \minheap\ structure for this problem. Yet another variant allows an encoding of the Cartesian tree of $A$ to be constructed from $A$ using only $O(\sqrt{n} \log n)$ bits of working space., Comment: Journal version of part of COCOON 2012 paper

Given an unordered array of $N$ elements drawn from a totally ordered set and an integer $k$ in the range from $1$ to $N$, in the classic selection problem the task is to find the $k$-th smallest element in the array. We study the complexity of this problem in the space-restricted random-access model: The input array is stored on read-only memory, and the algorithm has access to a limited amount of workspace. We prove that the linear-time prune-and-search algorithm---presented in most textbooks on algorithms---can be modified to use $\Theta(N)$ bits instead of $\Theta(N)$ words of extra space. Prior to our work, the best known algorithm by Frederickson could perform the task with $\Theta(N)$ bits of extra space in $O(N \lg^{*} N)$ time. Our result separates the space-restricted random-access model and the multi-pass streaming model, since we can surpass the $\Omega(N \lg^{*} N)$ lower bound known for the latter model. We also generalize our algorithm for the case when the size of the workspace is $\Theta(S)$ bits, where $\lg^3{N} \leq S \leq N$. The running time of our generalized algorithm is $O(N \lg^{*}(N/S) + N (\lg N) / \lg{} S)$, slightly improving over the $O(N \lg^{*}(N (\lg N)/S) + N (\lg N) / \lg{} S)$ bound of Frederickson's algorithm. To obtain the improvements mentioned above, we developed a new data structure, called the wavelet stack, that we use for repeated pruning. We expect the wavelet stack to be a useful tool in other applications as well., Comment: 16 pages, 1 figure, Preliminary version appeared in COCOON-2013

Grammar based compression, where one replaces a long string by a small context-free grammar that generates the string, is a simple and powerful paradigm that captures many popular compression schemes. In this paper, we present a novel grammar representation that allows efficient random access to any character or substring without decompressing the string. Let $S$ be a string of length $N$ compressed into a context-free grammar $\mathcal{S}$ of size $n$. We present two representations of $\mathcal{S}$ achieving $O(\log N)$ random access time, and either $O(n\cdot \alpha_k(n))$ construction time and space on the pointer machine model, or $O(n)$ construction time and space on the RAM. Here, $\alpha_k(n)$ is the inverse of the $k^{th}$ row of Ackermann's function. Our representations also efficiently support decompression of any substring in $S$: we can decompress any substring of length $m$ in the same complexity as a single random access query and additional $O(m)$ time. Combining these results with fast algorithms for uncompressed approximate string matching leads to several efficient algorithms for approximate string matching on grammar-compressed strings without decompression. For instance, we can find all approximate occurrences of a pattern $P$ with at most $k$ errors in time $O(n(\min\{|P|k, k^4 + |P|\} + \log N) + occ)$, where $occ$ is the number of occurrences of $P$ in $S$. Finally, we generalize our results to navigation and other operations on grammar-compressed ordered trees. All of the above bounds significantly improve the currently best known results. To achieve these bounds, we introduce several new techniques and data structures of independent interest, including a predecessor data structure, two "biased" weighted ancestor data structures, and a compact representation of heavy paths in grammars., Comment: Preliminary version in SODA 2011

We consider the {\it indexable dictionary} problem, which consists of storing a set $S \subseteq \{0,...,m-1\}$ for some integer $m$, while supporting the operations of $\Rank(x)$, which returns the number of elements in $S$ that are less than $x$ if $x \in S$, and -1 otherwise; and $\Select(i)$ which returns the $i$-th smallest element in $S$. We give a data structure that supports both operations in O(1) time on the RAM model and requires ${\cal B}(n,m) + o(n) + O(\lg \lg m)$ bits to store a set of size $n$, where ${\cal B}(n,m) = \ceil{\lg {m \choose n}}$ is the minimum number of bits required to store any $n$-element subset from a universe of size $m$. Previous dictionaries taking this space only supported (yes/no) membership queries in O(1) time. In the cell probe model we can remove the $O(\lg \lg m)$ additive term in the space bound, answering a question raised by Fich and Miltersen, and Pagh. We present extensions and applications of our indexable dictionary data structure, including: An information-theoretically optimal representation of a $k$-ary cardinal tree that supports standard operations in constant time, A representation of a multiset of size $n$ from $\{0,...,m-1\}$ in ${\cal B}(n,m+n) + o(n)$ bits that supports (appropriate generalizations of) $\Rank$ and $\Select$ operations in constant time, and A representation of a sequence of $n$ non-negative integers summing up to $m$ in ${\cal B}(n,m+n) + o(n)$ bits that supports prefix sum queries in constant time., Comment: Final version of SODA 2002 paper; supersedes Leicester Tech report 2002/16