13 results on '"Sahalie, Julie"'
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2. Genome sequence, comparative analysis and haplotype structure of the domestic dog
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Lindblad-Toh, Kerstin, Wade, Claire M., Mikkelsen, Tarjei S., Karlsson, Elinor K., Jaffe, David B., Kamal, Michael, Clamp, Michele, Chang, Jean L., Kulbokas, III, Edward J., Zody, Michael C., Mauceli, Evan, Xie, Xiaohui, Breen, Matthew, Wayne, Robert K., Ostrander, Elaine A., Ponting, Chris P., Galibert, Francis, Smith, Douglas R., deJong, Pieter J., Kirkness, Ewen, Alvarez, Pablo, Biagi, Tara, Brockman, William, Butler, Jonathan, Chin, Chee-Wye, Cook, April, Cuff, James, Daly, Mark J., DeCaprio, David, Gnerre, Sante, Grabherr, Manfred, Kellis, Manolis, Kleber, Michael, Bardeleben, Carolyne, Goodstadt, Leo, Heger, Andreas, Hitte, Christophe, Kim, Lisa, Koepfli, Klaus-Peter, Parker, Heidi G., Pollinger, John P., Searle, Stephen M. J., Sutter, Nathan B., Thomas, Rachael, Webber, Caleb, Baldwin, Jennifer, Abebe, Adal, Abouelleil, Amr, Aftuck, Lynne, Ait-zahra, Mostafa, Aldredge, Tyler, Allen, Nicole, An, Peter, Anderson, Scott, Antoine, Claudel, Arachchi, Harindra, Aslam, Ali, Ayotte, Laura, Bachantsang, Pasang, Barry, Andrew, Bayul, Tashi, Benamara, Mostafa, Berlin, Aaron, Bessette, Daniel, Blitshteyn, Berta, Bloom, Toby, Blye, Jason, Boguslavskiy, Leonid, Bonnet, Claude, Boukhgalter, Boris, Brown, Adam, Cahill, Patrick, Calixte, Nadia, Camarata, Jody, Cheshatsang, Yama, Chu, Jeffrey, Citroen, Mieke, Collymore, Alville, Cooke, Patrick, Dawoe, Tenzin, Daza, Riza, Decktor, Karin, DeGray, Stuart, Dhargay, Norbu, Dooley, Kimberly, Dooley, Kathleen, Dorje, Passang, Dorjee, Kunsang, Dorris, Lester, Duffey, Noah, Dupes, Alan, Egbiremolen, Osebhajajeme, Elong, Richard, Falk, Jill, Farina, Abderrahim, Faro, Susan, Ferguson, Diallo, Ferreira, Patricia, Fisher, Sheila, FitzGerald, Mike, Foley, Karen, Foley, Chelsea, Franke, Alicia, Friedrich, Dennis, Gage, Diane, Garber, Manuel, Gearin, Gary, Giannoukos, Georgia, Goode, Tina, Goyette, Audra, Graham, Joseph, Grandbois, Edward, Gyaltsen, Kunsang, Hafez, Nabil, Hagopian, Daniel, Hagos, Birhane, Hall, Jennifer, Healy, Claire, Hegarty, Ryan, Honan, Tracey, Horn, Andrea, Houde, Nathan, Hughes, Leanne, Hunnicutt, Leigh, Husby, M., Jester, Benjamin, Jones, Charlien, Kamat, Asha, Kanga, Ben, Kells, Cristyn, Khazanovich, Dmitry, Kieu, Alix Chinh, Kisner, Peter, Kumar, Mayank, Lance, Krista, Landers, Thomas, Lara, Marcia, Lee, William, Leger, Jean-Pierre, Lennon, Niall, Leuper, Lisa, LeVine, Sarah, Liu, Jinlei, Liu, Xiaohong, Lokyitsang, Yeshi, Lokyitsang, Tashi, Lui, Annie, Macdonald, Jan, Major, John, Marabella, Richard, Maru, Kebede, Matthews, Charles, McDonough, Susan, Mehta, Teena, Meldrim, James, Melnikov, Alexandre, Meneus, Louis, Mihalev, Atanas, Mihova, Tanya, Miller, Karen, Mittelman, Rachel, Mlenga, Valentine, Mulrain, Leonidas, Munson, Glen, Navidi, Adam, Naylor, Jerome, Nguyen, Tuyen, Nguyen, Nga, Nguyen, Cindy, Nguyen, Thu, Nicol, Robert, Norbu, Nyima, Norbu, Choe, Novod, Nathaniel, Nyima, Tenchoe, Olandt, Peter, O'Neill, Barry, O'Neill, Keith, Osman, Sahal, Oyono, Lucien, Patti, Christopher, Perrin, Danielle, Phunkhang, Pema, Pierre, Fritz, Priest, Margaret, Rachupka, Anthony, Raghuraman, Sujaa, Rameau, Rayale, Ray, Verneda, Raymond, Christina, Rege, Filip, Rise, Cecil, Rogers, Julie, Rogov, Peter, Sahalie, Julie, Settipalli, Sampath, Sharpe, Theodore, Shea, Terrance, Sheehan, Mechele, Sherpa, Ngawang, Shi, Jianying, Shih, Diana, Sloan, Jessie, Smith, Cherylyn, Sparrow, Todd, Stalker, John, Stange-Thomann, Nicole, Stavropoulos, Sharon, Stone, Catherine, Stone, Sabrina, Sykes, Sean, Tchuinga, Pierre, Tenzing, Pema, Tesfaye, Senait, Thoulutsang, Dawa, Thoulutsang, Yama, Topham, Kerri, Topping, Ira, Tsamla, Tsamla, Vassiliev, Helen, Venkataraman, Vijay, Vo, Andy, Wangchuk, Tsering, Wangdi, Tsering, Weiand, Michael, Wilkinson, Jane, Wilson, Adam, Yadav, Shailendra, Yang, Shuli, Yang, Xiaoping, Young, Geneva, Yu, Qing, Zainoun, Joanne, Zembek, Lisa, Zimmer, Andrew, and Lander, Eric S.
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Environmental issues ,Science and technology ,Zoology and wildlife conservation - Abstract
Author(s): Kerstin Lindblad-Toh (corresponding author) [1]; Claire M Wade [1, 2]; Tarjei S. Mikkelsen [1, 3]; Elinor K. Karlsson [1, 4]; David B. Jaffe [1]; Michael Kamal [1]; Michele Clamp [...]
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- 2005
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3. Engineered Murine HSCs Reconstitute Multi-lineage Hematopoiesis and Adaptive Immunity
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Lu, Yi-Fen, primary, Cahan, Patrick, additional, Ross, Samantha, additional, Sahalie, Julie, additional, Sousa, Patricia M., additional, Hadland, Brandon K., additional, Cai, Wenqing, additional, Serrao, Erik, additional, Engelman, Alan N., additional, Bernstein, Irwin D., additional, and Daley, George Q., additional
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- 2016
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4. A Proteome-Scale Map of the Human Interactome Network
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Rolland, Thomas, primary, Taşan, Murat, additional, Charloteaux, Benoit, additional, Pevzner, Samuel J., additional, Zhong, Quan, additional, Sahni, Nidhi, additional, Yi, Song, additional, Lemmens, Irma, additional, Fontanillo, Celia, additional, Mosca, Roberto, additional, Kamburov, Atanas, additional, Ghiassian, Susan D., additional, Yang, Xinping, additional, Ghamsari, Lila, additional, Balcha, Dawit, additional, Begg, Bridget E., additional, Braun, Pascal, additional, Brehme, Marc, additional, Broly, Martin P., additional, Carvunis, Anne-Ruxandra, additional, Convery-Zupan, Dan, additional, Corominas, Roser, additional, Coulombe-Huntington, Jasmin, additional, Dann, Elizabeth, additional, Dreze, Matija, additional, Dricot, Amélie, additional, Fan, Changyu, additional, Franzosa, Eric, additional, Gebreab, Fana, additional, Gutierrez, Bryan J., additional, Hardy, Madeleine F., additional, Jin, Mike, additional, Kang, Shuli, additional, Kiros, Ruth, additional, Lin, Guan Ning, additional, Luck, Katja, additional, MacWilliams, Andrew, additional, Menche, Jörg, additional, Murray, Ryan R., additional, Palagi, Alexandre, additional, Poulin, Matthew M., additional, Rambout, Xavier, additional, Rasla, John, additional, Reichert, Patrick, additional, Romero, Viviana, additional, Ruyssinck, Elien, additional, Sahalie, Julie M., additional, Scholz, Annemarie, additional, Shah, Akash A., additional, Sharma, Amitabh, additional, Shen, Yun, additional, Spirohn, Kerstin, additional, Tam, Stanley, additional, Tejeda, Alexander O., additional, Trigg, Shelly A., additional, Twizere, Jean-Claude, additional, Vega, Kerwin, additional, Walsh, Jennifer, additional, Cusick, Michael E., additional, Xia, Yu, additional, Barabási, Albert-László, additional, Iakoucheva, Lilia M., additional, Aloy, Patrick, additional, De Las Rivas, Javier, additional, Tavernier, Jan, additional, Calderwood, Michael A., additional, Hill, David E., additional, Hao, Tong, additional, Roth, Frederick P., additional, and Vidal, Marc, additional
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- 2014
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5. Next-generation sequencing to generate interactome datasets
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Yu, Haiyuan, primary, Tardivo, Leah, additional, Tam, Stanley, additional, Weiner, Evan, additional, Gebreab, Fana, additional, Fan, Changyu, additional, Svrzikapa, Nenad, additional, Hirozane-Kishikawa, Tomoko, additional, Rietman, Edward, additional, Yang, Xinping, additional, Sahalie, Julie, additional, Salehi-Ashtiani, Kourosh, additional, Hao, Tong, additional, Cusick, Michael E, additional, Hill, David E, additional, Roth, Frederick P, additional, Braun, Pascal, additional, and Vidal, Marc, additional
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- 2011
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6. Reprogramming of T Cells from Human Peripheral Blood
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Loh, Yuin-Han, primary, Hartung, Odelya, additional, Li, Hu, additional, Guo, Chunguang, additional, Sahalie, Julie M., additional, Manos, Philip D., additional, Urbach, Achia, additional, Heffner, Garrett C., additional, Grskovic, Marica, additional, Vigneault, Francois, additional, Lensch, M. William, additional, Park, In-Hyun, additional, Agarwal, Suneet, additional, Church, George M., additional, Collins, James J., additional, Irion, Stefan, additional, and Daley, George Q., additional
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- 2010
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7. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network
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Simonis, Nicolas, primary, Rual, Jean-François, additional, Carvunis, Anne-Ruxandra, additional, Tasan, Murat, additional, Lemmens, Irma, additional, Hirozane-Kishikawa, Tomoko, additional, Hao, Tong, additional, Sahalie, Julie M, additional, Venkatesan, Kavitha, additional, Gebreab, Fana, additional, Cevik, Sebiha, additional, Klitgord, Niels, additional, Fan, Changyu, additional, Braun, Pascal, additional, Li, Ning, additional, Ayivi-Guedehoussou, Nono, additional, Dann, Elizabeth, additional, Bertin, Nicolas, additional, Szeto, David, additional, Dricot, Amélie, additional, Yildirim, Muhammed A, additional, Lin, Chenwei, additional, de Smet, Anne-Sophie, additional, Kao, Huey-Ling, additional, Simon, Christophe, additional, Smolyar, Alex, additional, Ahn, Jin Sook, additional, Tewari, Muneesh, additional, Boxem, Mike, additional, Milstein, Stuart, additional, Yu, Haiyuan, additional, Dreze, Matija, additional, Vandenhaute, Jean, additional, Gunsalus, Kristin C, additional, Cusick, Michael E, additional, Hill, David E, additional, Tavernier, Jan, additional, Roth, Frederick P, additional, and Vidal, Marc, additional
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- 2008
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8. An experimentally derived confidence score for binary protein-protein interactions
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Braun, Pascal, primary, Tasan, Murat, additional, Dreze, Matija, additional, Barrios-Rodiles, Miriam, additional, Lemmens, Irma, additional, Yu, Haiyuan, additional, Sahalie, Julie M, additional, Murray, Ryan R, additional, Roncari, Luba, additional, de Smet, Anne-Sophie, additional, Venkatesan, Kavitha, additional, Rual, Jean-François, additional, Vandenhaute, Jean, additional, Cusick, Michael E, additional, Pawson, Tony, additional, Hill, David E, additional, Tavernier, Jan, additional, Wrana, Jeffrey L, additional, Roth, Frederick P, additional, and Vidal, Marc, additional
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- 2008
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9. An empirical framework for binary interactome mapping
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Venkatesan, Kavitha, primary, Rual, Jean-François, additional, Vazquez, Alexei, additional, Stelzl, Ulrich, additional, Lemmens, Irma, additional, Hirozane-Kishikawa, Tomoko, additional, Hao, Tong, additional, Zenkner, Martina, additional, Xin, Xiaofeng, additional, Goh, Kwang-Il, additional, Yildirim, Muhammed A, additional, Simonis, Nicolas, additional, Heinzmann, Kathrin, additional, Gebreab, Fana, additional, Sahalie, Julie M, additional, Cevik, Sebiha, additional, Simon, Christophe, additional, de Smet, Anne-Sophie, additional, Dann, Elizabeth, additional, Smolyar, Alex, additional, Vinayagam, Arunachalam, additional, Yu, Haiyuan, additional, Szeto, David, additional, Borick, Heather, additional, Dricot, Amélie, additional, Klitgord, Niels, additional, Murray, Ryan R, additional, Lin, Chenwei, additional, Lalowski, Maciej, additional, Timm, Jan, additional, Rau, Kirstin, additional, Boone, Charles, additional, Braun, Pascal, additional, Cusick, Michael E, additional, Roth, Frederick P, additional, Hill, David E, additional, Tavernier, Jan, additional, Wanker, Erich E, additional, Barabási, Albert-László, additional, and Vidal, Marc, additional
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- 2008
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10. Reprogramming of T Cells from Human Perinheral Blood.
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Yuin-Han Loh, Hartung, Odelya, Hu Li, Chunguang Guo, Sahalie, Julie M., Manos, Philip D., Urbach, Achia, Heffner, Garrett C., Grskovic, Marica, Vigneault, Francois, Lensch, William, ln-Hyun Park, Agarwal, Suneet, Church, George M., Collins, James J., lrion, Stefan, and Daley, George Q.
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BLOOD cells ,STEM cells ,CYTOLOGICAL research ,VENOUS puncture - Abstract
The article reports on a study that describes the derivation of human induced pluripotent stem cells (iPSCs) from multiple human blood sources including peripheral blood mononuclear cells (PBMCs) harvested by routine venipuncture in the U.S. Researchers demonstrate that reprogramming from blood cells represents a safe and efficient way of generating patient-specific iPSCs. Findings of the study provide a strategy for the reliable generation of iPSCs from PBMCs.
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- 2010
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11. An empirical framework for binary interactome mapping.
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Venkatesan, Kavitha, Rual, Jean-François, Vazquez, Alexei, Stelzl, Ulrich, Lemmens, Irma, Hirozane-Kishikawa, Tomoko, Tong Hao, Zenkner, Martina, Xiaofeng Xin, Kwang-Il Goh, Yildirim, Muhammed A., Simonis, Nicolas, Heinzmann, Kathrin, Gebreab, Fana, Sahalie, Julie M., Cevik, Sebiha, Simon, Christophe, de Smet, Anne-Sophie, Dann, Elizabeth, and Smolyar, Alex
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PROTEIN-protein interactions ,NUCLEOTIDE sequence ,HUMAN gene mapping ,DNA ,HUMAN genome - Abstract
Several attempts have been made to systematically map protein-protein interaction, or 'interactome', networks. However, it remains difficult to assess the quality and coverage of existing data sets. Here we describe a framework that uses an empirically-based approach to rigorously dissect quality parameters of currently available human interactome maps. Our results indicate that high-throughput yeast two-hybrid (HT-Y2H) interactions for human proteins are more precise than literature-curated interactions supported by a single publication, suggesting that HT-Y2H is suitable to map a significant portion of the human interactome. We estimate that the human interactome contains ∼130,000 binary interactions, most of which remain to be mapped. Similar to estimates of DNA sequence data quality and genome size early in the Human Genome Project, estimates of protein interaction data quality and interactome size are crucial to establish the magnitude of the task of comprehensive human interactome mapping and to elucidate a path toward this goal. [ABSTRACT FROM AUTHOR]
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- 2009
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12. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.
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Simonis, Nicolas, Rual, Jean-François, Carvunis, Anne-Ruxandra, Tasan, Murat, Lemmens, Irma, Hirozane-Kishikawa, Tomoko, Tong Hao, Sahalie, Julie M., Venkatesan, Kavitha, Gebreab, Fana, Cevik, Sebiha, Klitgord, Niels, Changyu Fan, Braun, Pascal, Ning Li, Ayivi-Guedehoussou, Nono, Dann, Elizabeth, Bertin, Nicolas, Szeto, David, and Dricot, Amélie
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PROTEIN-protein interactions ,CAENORHABDITIS elegans ,QUALITY standards ,GENES ,PROTEINS ,CELL physiology - Abstract
To provide accurate biological hypotheses and elucidate global properties of cellular networks, systematic identification of protein-protein interactions must meet high quality standards. We present an expanded C. elegans protein-protein interaction network, or 'interactome' map, derived from testing a matrix of ∼10,000 × ∼10,000 proteins using a highly specific, high-throughput yeast two-hybrid system. Through a new empirical quality control framework, we show that the resulting data set (Worm Interactome 2007, or WI-2007) was similar in quality to low-throughput data curated from the literature. We filtered previous interaction data sets and integrated them with WI-2007 to generate a high-confidence consolidated map (Worm Interactome version 8, or WI8). This work allowed us to estimate the size of the worm interactome at ∼116,000 interactions. Comparison with other types of functional genomic data shows the complementarity of distinct experimental approaches in predicting different functional relationships between genes or proteins. [ABSTRACT FROM AUTHOR]
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- 2009
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13. An experimentally derived confidence score for binary protein-protein interactions.
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Braun, Pascal, Tasan, Murat, Dreze, Matija, Barrios-Rodiles, Miriam, Lemmens, Irma, Haiyuan Yu, Sahalie, Julie M., Murray, Ryan R., Roncari, Luba, de Smet, Anne-Sophie, Venkatesan, Kavitha, Rual, Jean-François, Vandenhaute, Jean, Cusick, Michael E., Pawson, Tony, Hill, David E., Tavernier, Jan, Wrana, Jeffrey L., Roth, Frederick P., and Vidal, Marc
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PROTEIN-protein interactions ,PROTEIN analysis ,CELL physiology ,BIOPHYSICAL labeling ,MEDICAL research - Abstract
Information on protein-protein interactions is of central importance for many areas of biomedical research. At present no method exists to systematically and experimentally assess the quality of individual interactions reported in interaction mapping experiments. To provide a standardized confidence-scoring method that can be applied to tens of thousands of protein interactions, we have developed an interaction tool kit consisting of four complementary, high-throughput protein interaction assays. We benchmarked these assays against positive and random reference sets consisting of well documented pairs of interacting human proteins and randomly chosen protein pairs, respectively. A logistic regression model was trained using the data from these reference sets to combine the assay outputs and calculate the probability that any newly identified interaction pair is a true biophysical interaction once it has been tested in the tool kit. This general approach will allow a systematic and empirical assignment of confidence scores to all individual protein-protein interactions in interactome networks. [ABSTRACT FROM AUTHOR]
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- 2009
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