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Soybean is the main oilseed cultivated worldwide. Even though Brazil is the world's largest producer and exporter of soybean, its production is severely limited by biotic factors. Soil borne diseases are the most damaging biotic stressors since they significantly reduce yield and are challenging to manage. In this context, the present study aimed to evaluate the potential of a bacterial strain (Ag109) as a biocontrol agent for different soil pathogens (nematodes and fungi) of soybean. In addition, the genome of Ag109 was wholly sequenced and genes related to secondary metabolite production and plant growth promotion were mined. Ag109 showed nematode control in soybean and controlled 69 and 45% of the populations of Meloidogyne javanica and Pratylenchus brachyurus, respectively. Regarding antifungal activity, these strains showed activity against Macrophomia phaseolina, Rhizoctonia solani, and Sclerotinia sclerotiorum. For S. sclerotiorum, this strain increased the number of healthy plants and root dry mass compared to the control (with inoculation). Based on the average nucleotide identity and digital DNA-DNA hybridization, this strain was identified as Bacillus velezensis. Diverse clusters of specific genes related to secondary metabolite biosynthesis and root growth promotion were identified, highlighting the potential of this strain to be used as a multifunctional microbial inoculant that acts as a biological control agent while promoting plant growth in soybean. [ABSTRACT FROM AUTHOR]

In southern Manitoba, Canada, a survey was carried out in 2012 and 2013 to determine the presence of Heteroderidae cyst-forming plant-parasitic nematodes, with a focus on the soybean cyst nematode (SCN) (Heterodera glycines). A total of 48 fields having grown soybean were sampled. A modified Fenwick elutriation-flotation technique was used to extract cysts with a 75% cyst recovery efficiency. Cyst population density averaged 0.9 cysts kg−1 soil, with a total of 65 cysts recovered. Preliminary screening of cysts, based on general body shape and vulval cone top structure, showed the presence of cysts belong to circumfenestrate, and ambifenestrate groups of cyst-forming nematodes. Limited morphological data was accessible due to poor quality or insufficient cysts for analysis; however, generated DNA sequences for nuclear rDNA ITS and D2-D3 expansion region of the 28S rRNA were obtained for four samples and matched sequences in GenBank for the cyst nematodes Cactodera milleri, C. torreyanae, C. weissi, C. estonica and unknown Cactodera species. Only one of the ambifenestrate cysts with a cone top structure of Heterodera species yielded DNA for analysis and its identification was ambiguous for soybean cyst nematode (SCN). None of the cysts were positive through SCN diagnostic PCR. Cactodera is not a pest of soybean or other crops in Manitoba. These cyst nematodes are likely to be naturally associated with weeds and grasses in the sampled fields or may be introduced from neighbouring states of the USA. Further annual surveys are needed and recommended in the near future to encompass more soybean fields and corroborate the absence of the pest. [ABSTRACT FROM AUTHOR]

In an integrated nematode management system, the best results are generally obtained by rotating crops with resistant plants, antagonists, or poor host of parasites. Some reports indicate that Stylosanthes spp. have the potential to control nematodes. Thus, this study aimed to assess the reaction of Stylosanthes spp. 'Campo Grande' to Pratylenchus brachyurus and Meloidogyne javanica penetration and reproduction at different inoculum levels and examine the histopathology and histochemistry of parasitized plants. Stylosanthes did not prevent P. brachyurus penetration in roots. However, the number of penetrated nematodes was lower than that in soybean from 17 days after inoculation onwards. The numbers of second-stage and third-/fourth-stage juveniles of M. javanica in Stylosanthes roots were close to zero, and no females were observed. Assays conducted using increasing levels of inoculum (P. brachyurus or M. javanica) showed that Stylosanthes was resistant to the parasites, with a maximum reproduction factor of 0.59 for P. brachyurus and 0.07 for M. javanica. Histopathological analysis showed the presence of P. brachyurus in Stylosanthes, but without rupture of plant cells. M. javanica individuals were not observed. Histochemistry revealed the presence of phenolic compounds in the epidermis of Stylosanthes and proteins in plant cells. These results show that Stylosanthes spp. 'Campo Grande' can be used in crop rotation programs in fields with mixed infestation of P. brachyurus and M. javanica. [ABSTRACT FROM AUTHOR]

Key message: The soybean gene GmSABP2-1 encodes methyl salicylate esterase and its overexpression led to significant reduction in development of pathogenic soybean cyst nematode. Soybean cyst nematode (SCN, Heterodera glycines) is one of the most devastating pests of soybean (Glycine max L. Merr.). In searching for SCN-defense genes, a soybean gene of the methylesterase (MES) family was found to be upregulated in an SCN-resistant soybean line and downregulated in an SCN-susceptible line upon SCN infection. This gene was designated as GmSABP2-1. Here, we report on biochemical and overexpression studies of GmSABP2-1 to examine its possible function in SCN resistance. The protein encoded by GmSABP2-1 is closely related to known methyl salicylate esterases. To determine the biochemical function of GmSABP2-1, a full-length cDNA of GmSABP2-1 was cloned into a protein expression vector and expressed in Escherichia coli. The resulting recombinant GmSABP2-1 was demonstrated to catalyze the demethylation of methyl salicylate. The biochemical properties of GmSABP2-1 were determined. Its apparent Km value was 46.2 ± 2.2 μM for methyl salicylate, comparable to those of the known methyl salicylate esterases. To explore the biological significance of GmSABP2-1 in soybean defense against SCN, we first overexpressed GmSABP2-1 in transgenic hairy roots of an SCN-susceptible soybean line. When infected with SCN, GmSABP2-1-overexpressing hairy roots showed 84.5% reduction in the development of SCN beyond J2 stage. To provide further genetic evidence for the role of GmSABP2-1 in SCN resistance, stable transgenic soybean plants overexpressing GmSABP2-1 were produced. Analysis of the GmSABP2-1-overexpressing lines showed a significant reduction in SCN development compared to non-transgenic plants. In conclusion, we demonstrated that GmSABP2-1 encodes methyl salicylate esterase and functions as a resistance-related gene against SCN. [ABSTRACT FROM AUTHOR]

Soybean [Glycine max (L.) Merr.] is an important legume crop worldwide, which provides abundant plant protein and oil for human beings. Soybean mosaic virus (SMV) can cause serious damage to the yield and quality of soybean, but it is difficult to control SMV with chemicals, breeding SMV-resistant varieties has become the most effective way to control the disease. Therefore, it is important to identify SMV resistance genes from soybean resources and apply them to soybean breeding. In this study, the disease rates (DRs) of 219 soybean accessions to SMV strain SC7 in two environments were investigated. A high-density NJAU 355 K SoySNP array was used for genome-wide association study (GWAS) of DR. A 274 kb region on chromosome 15 (1,110,567 bp to 1,384,173 bp) was repeatedly detected in two environments. Six new significant single nucleotide polymorphisms (SNPs) on chromosome 15 were identified. Four of these six SNPs were located within two candidate genes, Glyma.15G015700 and Glyma.15G015800. The elite haplotype Glyma.15G015700Hap I with low DR exhibited strong resistance to SC7. The expression of Glyma.15G015700 in the SMV-resistant accession increased significantly after inoculation with SC7. Furthermore, most of the proteins predicted to interact with Glyma.15G015700 are heat shock proteins, which have been shown to be related to disease resistance. In summary, new SMV resistance loci and a new candidate gene, Glyma.15G015700, were identified and might be utilized in further soybean disease resistance breeding. [ABSTRACT FROM AUTHOR]

Soybean (Glycine max) is an important oilseed, protein and biodiesel crop. It faces significant threats from bacterial, fungal and viral pathogens, which cause economic losses and jeopardises global food security. In this article, we explore the relationship between soybeans and these pathogens, focusing on the molecular responses that are crucial for soybeans defence mechanisms. Molecular responses involve small RNAs and specific genes, including resistance (R) genes that are pivotal in triggering immune responses. Functional genomics, which makes use of cutting-edge technologies, such as CRISPR Cas9 gene editing, allows us to identify genes that provide insights into the defence mechanisms of soybeans with the focus on using genomics to understand the mechanisms involved in host pathogen interactions and ultimately improve the resilience of soybeans. Genes like GmKR3 and GmVQ58 have demonstrated resistance against soybean mosaic virus and common cutworm, respectively. Genetic studies have identified quantitative trait loci (QTLs) including those linked with soybean cyst nematode, root-knot nematode and Phytophthora root and stem rot resistance. Additionally, resistance against Asian soybean rust and soybean cyst nematode involves specific genes and their variations in terms of different copy numbers. To address the challenges posed by evolving pathogens and meet the demands of a growing population, accelerated soybean breeding efforts leveraging functional genomics are imperative. Targeted breeding strategies based on a deeper understanding of soybean gene function and regulation will enhance disease resistance, ensuring sustainable agriculture and global food security. Collaborative research and continued technological advancements are crucial for securing a resilient and productive agricultural future. [ABSTRACT FROM AUTHOR]

Soybean aphid (Aphis glycines) insecticides are used throughout the Upper Midwest and Great Plains regions of North America, including the farmland region of Minnesota, USA, to combat insect pests. These broad‐spectrum, foliar spray insecticides have the potential to drift beyond target fields into nearby grassland cover where birds and other insectivores forage. Arthropods serve important roles in grassland ecology and are susceptible to mortality and sublethal effects from exposure to these pesticides. Our objective was to assess effects of soybean aphid insecticides on grassland arthropods, especially those that are important in grassland bird diets. We measured the abundance, consumable biomass, and family richness of insects and spiders in grasslands adjacent to soybean fields in an agricultural landscape. Soybean fields were treated with chlorpyrifos and lambda‐cyhalothrin, which were the 2 most common foliar pesticides used to control soybean aphids in Minnesota. We compared measures at focal sites to samples collected at reference sites adjacent to corn fields not sprayed for aphids during 3 periods in mid‐to‐late summer: 1–3 days before spraying, 3–5 days post‐spraying, and 19–21 days post‐spraying. The abundance of arthropods in focal grasslands was lower 3–5 days after pesticide applications. Coleoptera family richness at focal sites was also lower than at reference sites 3–5 days after pesticide applications. These measures 19–21 days after application were similar to pre‐spraying levels, indicating that arthropod populations rebounded during this period. Measures of consumable dry biomass, bird prey abundance, bird prey biomass, family richness of Araneae, family richness of Hemiptera, and family richness of Orthoptera were not different between focal and reference sites after spraying. Our results reveal that reductions in arthropod food abundance for grassland birds are associated with pesticide applications up to 5 days after spraying. We suggest that natural resource managers factor proximity to row crop fields and susceptibility to pesticide drift into decisions about where to add grassland cover to landscapes. [ABSTRACT FROM AUTHOR]

Two species of potato cyst nematodes (PCNs), Globodera rostochiensis (Woll.) and Globodera pallida (Stone), threaten potato (Solanum tuberosum L.) production worldwide. PCNs are remarkably persistent in soil and can reduce potato yield significantly. The most sustainable approach to PCN control is deploying resistant cultivars. This review focuses on the knowledge needed to conduct a successful PCN resistance breeding program, including identifying resistance sources in wild species, introgressing them into cultivated potato, and sifting through clones to identify a marketable potato. Core Ideas: Potato cyst nematodes (PCNs) are a serious pest worldwide.Breeding resistant potato varieties is the most sustainable way to control these pests.Breeding for resistance to PCNs requires sustained teamwork between a breeder and nematologist. [ABSTRACT FROM AUTHOR]

Mitogen‐activated protein kinase (MPK) cascades play central signalling roles in plant immunity and stress response. The soybean orthologue of MPK kinase2 (GmMKK2) was recently identified as a potential signalling node whose expression is upregulated in the feeding site induced by soybean cyst nematode (SCN, Heterodera glycines). To investigate the role of GmMKK2 in soybean–SCN interactions, we overexpressed a catabolically inactive variant referred to as kinase‐dead variant (KD‐GmMKK2) using transgenic hairy roots. KD‐GmMKK2 overexpression caused significant reduction in soybean susceptibility to SCN, while overexpression of the wild‐type variant (WT‐GmMKK2) exhibited no effect on susceptibility. Transcriptome analysis indicated that KD‐GmMKK2 overexpressing plants are primed for SCN resistance via constitutive activation of defence signalling, particularly those related to chitin, respiratory burst, hydrogen peroxide and salicylic acid. Phosphoproteomic profiling of the WT‐GmMKK2 and KD‐GmMKK2 root samples upon SCN infection resulted in the identification of 391 potential targets of GmMKK2. These targets are involved in a broad range of biological processes, including defence signalling, vesicle fusion, chromatin remodelling and nuclear organization among others. Furthermore, GmMKK2 mediates phosphorylation of numerous transcriptional and translational regulators, pointing to the presence of signalling shortcuts besides the canonical MAPK cascades to initiate downstream signalling that eventually regulates gene expression and translation initiation. Finally, the functional requirement of specific phosphorylation sites for soybean response to SCN infection was validated by overexpressing phospho‐mimic and phospho‐dead variants of two differentially phosphorylated proteins SUN1 and IDD4. Together, our analyses identify GmMKK2 impacts on signalling modules that regulate soybean response to SCN infection. [ABSTRACT FROM AUTHOR]

Plant-parasitic nematodes (PPNs) are among the most serious phytopathogens and cause widespread and serious damage in major crops. In this study, using a genome mining method, we identified nonribosomal peptide synthetase (NRPS)-like enzymes in genomes of plant-parasitic nematodes, which are conserved with two consecutive reducing domains at the N-terminus (A-T-R1-R2) and homologous to fungal NRPS-like ATRR. We experimentally investigated the roles of the NRPS-like enzyme (MiATRR) in nematode (Meloidogyne incognita) parasitism. Heterologous expression of Miatrr in Saccharomyces cerevisiae can overcome the growth inhibition caused by high concentrations of glycine betaine. RT-qPCR detection shows that Miatrr is significantly upregulated at the early parasitic life stage (J2s in plants) of M. incognita. Host-derived Miatrr RNA interference (RNAi) in Arabidopsis thaliana can significantly decrease the number of galls and egg masses of M. incognita, as well as retard development and reduce the body size of the nematode. Although exogenous glycine betaine and choline have no obvious impact on the survival of free-living M. incognita J2s (pre-parasitic J2s), they impact the performance of the nematode in planta, especially in Miatrr-RNAi plants. Following application of exogenous glycine betaine and choline in the rhizosphere soil of A. thaliana, the numbers of galls and egg masses were obviously reduced by glycine betaine but increased by choline. Based on the knowledge about the function of fungal NRPS-like ATRR and the roles of glycine betaine in host plants and nematodes, we suggest that MiATRR is involved in nematode–plant interaction by acting as a glycine betaine reductase, converting glycine betaine to choline. This may be a universal strategy in plant-parasitic nematodes utilizing NRPS-like ATRR to promote their parasitism on host plants. [ABSTRACT FROM AUTHOR]

The central circadian pacemaker in the suprachiasmatic nuclei (SCN) aligns the phase and period of autonomous molecular oscillators in peripheral cells to daily light/dark cycles via physiological, neuronal, hormonal, and metabolic signals. Among different entrainment factors, temperature entrainment has been proposed as an essential alternative for inducing and sustaining circadian rhythms in vitro. While the synchronization mechanisms for hormones such as glucocorticoids have been widely studied, little is known about the crucial role of body temperature as a systemic cue. In this work, we develop a semi-mechanistic mathematical model describing the entrainment of peripheral clocks to temperature rhythms. The model incorporates a temperature sensingtransduction cascade involving a heat shock transcription factor-1 (HSF1) and heat shock response (HSR) pathway to simulate the entrainment of clock genes. The model is used to investigate the mammalian temperature entrainment and synchronization of cells subject to temperature oscillations of different amplitudes and magnitudes and examine the effects of transitioning between temperature schedules. Our computational analyses of the system’s dynamic responses reveal that 1) individual cells gradually synchronize to the rhythmic temperature signal by resetting their intrinsic phases to achieve coherent dynamics while oscillations are abolished in the absence of temperature rhythmicity; 2) alterations in the amplitude and period of temperature rhythms impact the peripheral synchronization behavior; 3) personalized synchronization strategies allow for differential, adaptive responses to temperature rhythms. Our results demonstrate that temperature can be a potent entrainer of circadian rhythms. Therefore, in vitro systems subjected to temperature modulation can serve as a potential tool for studying the adjustment or disruption of circadian rhythms. [ABSTRACT FROM AUTHOR]

Soybean cyst nematode (SCN; Heterodera glycines Ichinohe), one of the most devastating soybean (Glycine max) pathogens, causes significant yield loss in soybean production. Nematode infection triggers plant defense responses; however, the components involved in the upstream signaling cascade remain largely unknown. In this study, we established that a mitogen-activated protein kinase (MAPK) signaling module, activated by nematode infection or wounding, is crucial for soybeans to establish SCN resistance. GmMPK3 and GmMPK6 directly interact with CDG1-LIKE1 (GmCDL1), a member of the receptor-like cytoplasmic kinase (RLCK) subfamily VII. These kinases phosphorylate GmCDL1 at Thr-372 to prevent its proteasome-mediated degradation. Functional analysis demonstrated that GmCDL1 positively regulates immune responses and promotes SCN resistance in soybeans. GmMPK3-mediated and GmMPK6-mediated phosphorylation of GmCDL1 enhances GmMPK3 and GmMPK6 activation and soybean disease resistance, representing a positive feedback mechanism. Additionally, 2 L-type lectin receptor kinases, GmLecRK02g and GmLecRK08g, associate with GmCDL1 to initiate downstream immune signaling. Notably, our study also unveils the potential involvement of GmLecRKs and GmCDL1 in countering other soybean pathogens beyond nematodes. Taken together, our findings reveal the pivotal role of the GmLecRKs–GmCDL1–MAPK regulatory module in triggering soybean basal immune responses. The soybean receptor-like cytoplasmic kinase GmCDL1 directly links L-type lectin receptor kinases for MAP kinase activation and undergoes MAP kinase–mediated phosphorylation to boost immune signaling. [ABSTRACT FROM AUTHOR]

The golden potato cyst nematode, Globodera rostochiensis (Wollenweber, 1923) Behren, is an economically important pest of potatoes worldwide. In the Philippines, although potato cultivation in the northern part of Luzon has been reported to be plagued by this nematode, no intensive study on its characterization has been done yet. In this study, morphological and molecular analyses were employed to characterize the golden potato cyst nematode present in the country, particularly those collected from Bauko, Mt. Province. Morphological verification through perineal region analysis showed a circumfenestrate vulval and a non-fenestrate anal region, typical of Globodera spp. Morphometrics of second-stage juveniles is also consistently identified with published descriptions of Globodera rostochiensis including the type specimen. Here, the DNA barcodes based on the ITS rDNA, 28S rDNA, and COI gene of the local population of G. rostochiensis were generated. Identity mining of the barcode sequences revealed an identical match to deposited ITS1, 28S, and COI gene sequences of G. rostochiensis with GenBank accession numbers, LC310801.1, MK311329.1, and MT240262.1, respectively. The generated barcode sequences from this study were deposited in NCBI GenBank Database with accession numbers ON739171-ON739173 for ITS, ON739174-ON739176 for 28S, and OQ195126-OQ195128 for COI. Phylogenetic analyses based on three markers yielded phylograms that grouped BMP isolates with other G. rostochiensis accessions in one clade. This study is the first to generate comprehensive morphological data and DNA barcodes for G. rostochiensis in the Philippines. [ABSTRACT FROM AUTHOR]

The identification of soybean genotypes tolerant to soil compaction makes it possible to reduce productivity loss under stress conditions. Added to this, the prior selection of these genotypes will result in greater assertiveness in the positioning of cultivars in the field. Thus, the objective was to evaluate the susceptibility of soybean genotypes to compaction in greenhouse and field conditions; verify which characteristics of seedlings under high resistance to root penetration are correlated with crop production in compacted soil; and to validate the substrate mechanical impedance method for evaluating the susceptibility of plant genotypes to soil compaction. Seeds of 20 genotypes were sown in a substrate mechanical impedance system under controlled conditions. The characteristics evaluated were total root length, total root surface area, mean root diameter, total root volume, taproot length, shoot length, root dry matter and seedling shoot dry matter. In the field experiment, half of the planting area was compacted, constituting two treatments, soil with and without compaction. The percentage of seedling emergence, initial plant height, stem diameter, number of nodes, internode length, number of lateral branches, shoot dry matter, final plant height, absolute and relative growth rate, number of pods, weight of 100 seeds and grain yield. In addition, the number of days between soybean sowing until plant flowering and grain harvest was recorded according to genotype and soil compaction level. In a controlled environment, genotypes tolerant to soil compaction show greater plasticity of root characteristics and smaller alterations in the shoot of seedlings. In the field, these genotypes show smaller reductions in growth rate, height, number of pods and grain yield. The shoot dry matter and the root dry matter of soybean seedlings in a mechanical impedance system present a positive and negative correlation, respectively, with soybean yield in compacted soil, indicating that the genetically determined susceptibility to soil compaction stress was similar throughout ontogenesis. The substrate mechanical impedance system used to evaluate the performance of soybean seedlings under stress, facilitates the decision‐making in breeding programs focused on identifying genotypes expressing soil compaction tolerance. [ABSTRACT FROM AUTHOR]

The circadian clock orchestrates many physiological and behavioural rhythms in mammals with 24‐h periodicity, through a hierarchical organisation, with the central clock located in the suprachiasmatic nucleus (SCN) in the hypothalamus. The circuits of the SCN generate circadian rhythms with precision, relying on intrinsic coupling mechanisms, for example, neurotransmitters like arginine vasopressin (AVP), vasoactive intestinal peptide (VIP), neuronal gamma‐aminobutyric acid (GABA) signalling and astrocytes connected by gap junctions composed of connexins (Cx). In female rodents, the presence of estrogen receptors (ERs) in the dorsal SCN suggests an influence of estrogen (E2) on the circuit timekeeping that could regulate circadian rhythm and coupling. To investigate this, we used SCN explants together with hypothalamic neurons and astrocytes. First, we showed that E2 stabilised the circadian amplitude in the SCN when rAVPs (receptor‐associated vasopressin peptides) were inhibited. However, the phase delay induced by VIPAC2 (VIP receptors) inhibition remained unaffected by E2. We then showed that E2 exerted its effects in the SCN via ERβ (estrogen receptor beta), resulting in increased expression of Cx36 and Cx43. Notably, specific inhibition of both connexins resulted in a significant reduction in circadian amplitude within the SCN. Remarkably, E2 restored the period with inhibited Cx36 but not with Cx43 inhibition. This implies that the network between astrocytes and neurons, responsible for coupling in the SCN, can be reinforced through E2. In conclusion, these findings provide new insights into how E2 regulates circadian rhythms ex vivo in an ERβ‐dependent manner, underscoring its crucial role in fortifying the SCN's rhythm. [ABSTRACT FROM AUTHOR]

Hypothiocyanous acid (HOSCN) is an endogenous oxidant produced by peroxidase oxidation of thiocyanate (SCN−), an ubiquitous sulfur-containing pseudohalide synthesized from cyanide. HOSCN serves as a potent microbicidal agent against pathogenic bacteria, viruses, and fungi, functioning through thiol-targeting mechanisms, independent of currently approved antimicrobials. Additionally, SCN− reacts with hypochlorous acid (HOCl), a highly reactive oxidant produced by myeloperoxidase (MPO) at sites of inflammation, also producing HOSCN. This imparts both antioxidant and antimicrobial potential to SCN−. In this review, we discuss roles of HOSCN/SCN− in immunity and potential therapeutic implications for combating infections. [Display omitted] • Hypothiocyanous acid (HOSCN) is an endogenous oxidant that demonstrates antimicrobial activities against viruses, bacteria and fungi. • Multiple preclinical studies reported benefits of promoting HOSCN formation in vivo to treat pulmonary infections. • HOSCN is better tolerated by mammalian cells than other chordata peroxidase-derived oxidants, such as hypochlorous acid. • Some bacterial strains are resistant to HOSCN, primarily via similar oxidoreductase mechanisms to those reported in mammalian cells. • HOSCN/SCN- treatment holds promise for viral, bacterial, and fungal infections, but potential toxicity and HOSCN resistance must be considered. [ABSTRACT FROM AUTHOR]

Soybean cyst nematode (SCN), Heterodera glycines, HG type 1.2.5.7 is the most virulent and widespread SCN biotype in the southern states of the USA, but its effect on soybean (Glycine max [L.] Merr.) nitrogen fixation (NF) activity and growth is not well documented. The objectives of this study were to: (1) measure the impact of HG type 1.2.5.7 on NF activity during the early vegetative stage of three soybean genotypes and (2) compare the impact on soybean leaf and root development, and plant growth. The NF activity of two susceptible (S) genotypes ("Ellis" and "Williams 82") and one resistant (R) genotype (PI 88,788), subjected to a 10,000-egg treatment, was measured using an in-situ flow-through acetylene reduction assay. The average NF activity of the soybean genotypes was decreased by SCN activity. Time points assessment showed that the NF activity was differently impacted among the genotypes. Based on the measured values, the NF activity was decreased by 30% in SCN infected plants of Williams 82 but that of PI 88,788 and Ellis was affected. Likewise, soybean leaf color and leaf area were affected by SCN infection, but there was no impact on root length and root area. These results showed that SCN HG type 1.2.5.7 can exhibit varying negative impact on NF and shoot growth of S soybean genotypes, while R genotypes may be unaffected. Thus, indicating genetic resistance continues to be a critical tool for the management of the SCN. [ABSTRACT FROM AUTHOR]

To evaluate the current incidence of pulmonary hemorrhage and the potential factors contributing to its increased risk after percutaneous CT-guided pulmonary nodule biopsy and to summarize the technical recommendations for its treatment. In this observational study, patient data were collected from ten medical centers from April 2021 to April 2022. The incidence of pulmonary hemorrhage was as follows: grade 0, 36.1% (214/593); grade 1, 36.8% (218/593); grade 2, 18.9% (112/593); grade 3, 3.5% (21/593); and grade 4, 4.7% (28/593). High-grade hemorrhage (HGH) occurred in 27.2% (161/593) of the patients. The use of preoperative breathing exercises (PBE, p =0.000), semiautomatic cutting needles (SCN, p = 0.004), immediate contrast enhancement (ICE, p =0.021), and the coaxial technique (CoT, p = 0.000) were found to be protective factors for HGH. A greater length of puncture (p =0.021), the presence of hilar nodules (p = 0.001), the presence of intermediate nodules (p = 0.026), a main pulmonary artery diameter (mPAD) larger than 29 mm (p = 0.015), and a small nodule size (p = 0.014) were risk factors for high-grade hemorrhage. The area under the curve (AUC) was 0.783. These findings contribute to a deeper understanding of the risks associated with percutaneous CT-guided pulmonary nodule biopsy and provide valuable insights for developing strategies to minimize pulmonary hemorrhage. [ABSTRACT FROM AUTHOR]

Cowpea mild mottle virus (CpMMV) is an important viral pathogen that seriously influences the yield and seed quality of soybeans worldwide. Resistance breeding is one of the most effective, economical, and environmentally safe strategies for controlling the disease caused by CpMMV. However, only few resistance genes have been identified in soybeans. In this study, the resistance of 169 soybean germplasms from Northeast China to a CpMMV strain isolated from soybean in China was evaluated, and a genome-wide association study (GWAS) was then performed to find possible resistance genes in these soybean germplasms. Nine resistant soybean germplasms were identified and two single nucleotide polymorphism sites (SNPs) were found to be closely associated with CpMMV resistance. A total number of 51 and 25 candidate genes neighboring the resistance-associated SNPs on chromosomes 6 and 12, respectively, were identified, among which one receptor-like kinase (RLK) on chromosome 6 and 2 toll-interleukin-1 receptor nucleotide-binding leucine-rich repeat receptors (TNLs) on chromosome 12 were recognized as the most probable resistance genes, respectively. Together, these data provide new insights on the resistance resources of soybeans to CpMMV, which will benefit the breeding of CpMMV-resistant soybean cultivars. [ABSTRACT FROM AUTHOR]

Charcoal rot, caused by Macrophomina phaseolina, is a disease of economic significance in soybean production. The evaluation of this disease is difficult due to the lack of reliable and efficient methods for testing soybean genotypes. This work aimed at investigating different inoculation methods for Macrophomina phaseolina in soybean genotypes to determine the degree of resistance and their use in genetic improvement programs. Infected sorghum seeds, pregerminated seed in culture medium, and infected toothpick test were the methods tested. Colonization by the fungus, determined as a colony‐forming unit (CFU), and disease development based on root and stem severity (RSS) were evaluated. There was a good correlation between CFU and RSS (0.87), with the infected sorghum seed method being the most efficient means of inoculating. The results show that PI594302 was the most resistant line regarding the two studied parameters and would be a source of resistance to charcoal rot in breeding programs. [ABSTRACT FROM AUTHOR]

Plant parasitic nematodes cause severe damage to soybean crops, leading to substantial losses in yield and quality. However, more information is needed regarding the occurrence, distribution and damage status of soybean PPNs in Ethiopia. A total of 180 samples of rhizosphere and roots were collected randomly from three major soybean‐producing districts of Metekel Zone. Nematodes were extracted and identified at the genus level based on their morphological characteristics, except Meloidogyne javanica, the deadly species, which was identified using morphological and molecular techniques. Seven nematode genera were recovered: Meloidogyne, Scutellonema, Pratylenchus, Helicotylenchus, Rotylenchulus, Hemicycliophora and Criconema. The genera Meloidogyne, Scutellonema and Pratylenchus were dominant and had FO% of 98.3%, 97.5% and 81.8%, respectively. The host status of 10 soybean varieties to M. javanica infection was determined. Data on the shoot height, root length, fresh shoot and root weight, gall number and nematode density were estimated 3 months after inoculation. The results revealed that Jalele variety suppresses M. javanica multiplication while the other nine supported it. Comparatively, Pawe‐3, Awassa‐95 and Koreme varieties supported the highest nematode multiplication 24.4, 16.2 and 15.3 reproductive factors, respectively. Nova experienced the highest shoot and root relative biomass losses (84%) and roots (63%). In contrast, Jalele did not experience any loss in all parameters. However, Jalele variety resisted M. javanica, making it a promising approach towards soybean breeding programs for nematode management. [ABSTRACT FROM AUTHOR]

• Great progress has been made previously in MicroRNAs-guided gene regulation in plant-parasitic cyst nematodes interactions. Little, however, is known about miRNAs regulation of nematode stress response in Cucumis metuliferus, which is a relative of cultivated cucumber or melon and highly resistant to Meloidogyne incognita. • Five cmu-miR396 precursors were identified and characterized from C. metuliferus. A total of 12 genes were then predicted to be as the potential targets of cmu-miR396 and their function involved in transcription factor, metabolism, signal transduction and stress response. Moreover, three cmu-GRFs genes in roots of C. metuliferus were amplified and confirmed by RT-PCR experimently. The analysis was performed for the phylogeny and subcellular localization of cmu-GRFs protein, and the three transcription factors cmu-GRFs were confirmed as the candidate targets of cmu-miR396 through 5′RLM-RACE assays. • These data laid a foundation for further functional analyses to reveal the roles played by miR396 during the interaction between C. metuliferus and M. incognita. MicroRNAs (miRNAs), a class of non-coding small RNAs, play an important role in biotic and abiotic stresses. Previously, great progress has been made in miRNA-guided gene regulation in plant-parasitic cyst nematodes interactions. However, little is known about miRNAs regulation of nematode stress response in Cucumis metuliferus , which is a relative of cultivated cucumber or melon and highly resistant to the root-knot nematode Meloidogyne incognita. On the basis of our investigation recently, five cmu-miR396 precursors were firstly identified and characterized from C. metuliferus in this study. Subquently, a total of 12 genes were predicted to be as the potential targets of cmu-miR396 and their function involved in transcription factor, metabolism, signal transduction and stress response. Moreover, three cmu-GRFs genes with significant differential expression in roots of C. metuliferus were successfully amplified and confirmed by RT-PCR experimently. Additionally, the analysis was performed for the phylogeny and subcellular localization of cmu-GRFs protein, and the three transcription factors cmu-GRFs were confirmed as the candidate targets of cmu-miR396 through 5′RLM-RACE assays. These data laid a foundation for further functional analyses to reveal the roles played by miR396 during the interaction between C. metuliferus and M. incognita , leading to a better understanding of the mechanisms and underlying regulatory networks of miR396-mediated resistance to M. incognita in C. metuliferus. [ABSTRACT FROM AUTHOR]

Brodie is a high-yielding white-fleshed potato cultivar with resistance to both pathotypes Ro1 and Ro2 of the golden cyst nematode (Globodera rostochiensis) and partial resistance to pathotype Pa2/3 of the pale cyst nematode (G. pallida). It was selected from a cross made at Cornell University in 1998 between Cornell breeding clones NY121 and NY115 and released by the New York Agricultural Experiment Station in 2018. The tubers are oval and slightly flattened, with shallow eyes and smooth attractive skin. In addition to its suitability for tablestock, Brodie also has merit for chipping as its chip color is good, comparable in lightness to the chipping cultivar Snowden when chipped out of two to four months of 6.7 °C storage. Specific gravity of Brodie averaged 1.078 across 63 Northeastern US trials, 0.010 less than Atlantic in the same locations, while marketable yield averaged 115% of Atlantic across 70 trials in New York and Pennsylvania. For growers affected by pathotypes Ro1 and Ro2 of the golden nematode, Brodie provides a means of producing a marketable crop while simultaneously decreasing infestation levels of both Ro1 and Ro2. [ABSTRACT FROM AUTHOR]

Derived from collagen, gelatin is a valuable biopolymer with diverse applications. Traditionally sourced from mammals, environmental concerns have prompted exploration of alternatives. Fish gelatin, particularly from tropical species, has emerged as a promising source. Gelatin from tambaqui (Colossoma macropomum) skin exhibits extraction yield of 52.96%, medium Bloom strength (123 g ±20), low turbidity (5.95 FNU ± 0.11), gelling temperature of 16°C, and significant levels of glycine (22.62%), proline (11.97%), and hydroxyproline (9.59%). Thermal analysis indicated stability up to 110°C. These properties suggest that tambaqui skin gelatin possesses suitable characteristics for various applications, including films, confectionary products, and microencapsulated systems. [ABSTRACT FROM AUTHOR]

This article, published in the Russian Journal of Ecology, explores the influence of funnel material on the efficiency of nematode extraction using the Baermann method. The study found that the material of the funnel, whether glass or plastic, affects the extraction efficiency of nematodes. Plastic funnels resulted in a significantly higher number of extracted nematodes compared to glass funnels. Additionally, more nematodes were found to adhere to the walls of glass funnels compared to plastic funnels. The authors suggest that caution should be exercised when combining data from different studies if the funnel material is not specified, and recommend using funnels made of materials with hydrophobic properties to minimize losses. [Extracted from the article]

Simple Summary: When holocyclic aphids, Aphis glycines Matsumura, were exposed to a diurnal of 35 °C lasting for seven days, the development, reproduction, and morphogenesis were affected significantly. These results are important for predicting the dynamics of A. glycines in this region. This also provides evidence that shows short-term heatwaves are useful for controlling the occurrence of A. glycines. The soybean aphid, A. glycines, is an important soybean pest. Harbin, in the Heilongjiang Province, is an area with increasing temperatures in China that faces frequent short-term heatwaves. In this study, the development, reproduction, and morph differentiation of A. glycines have been studied when they were exposed to diurnal at 35 °C for seven days, beginning at different developmental stages. The nymph stage duration of A. glycines was longer, the adult lifespans and total lifespans were shorter, and their bodies were smaller when exposed to a diurnal of 35 °C beginning at the 1st to 4th stadium. The adult reproduction period was shorter, and the adult fecundity and intrinsic rate of increase were smaller than those of aphids reared at a diurnal of 25 °C. A higher and lower proportion of gynoparae and males were deposited as offspring on day 13 by adults when exposed to diurnal at 35 °C, beginning at the 1st to 4th stadium, respectively, than those of aphids reared at a constant of 20 °C. These results are important for predicting the dynamics of A. glycines in Harbin soybeans. This provides evidence that short-term heatwaves are probably useful for controlling A. glycines, by inhibiting development and male morphogenesis. [ABSTRACT FROM AUTHOR]

Summary: The use of non-host cover crops can be a viable strategy for managing soybean cyst nematode (SCN) Heterodera glycines. Cover crops may affect SCN biology and reduce populations by acting as trap crops that promote the hatching and/or penetration by second-stage juveniles (J2) without supporting their development. Two growth chamber experiments were conducted to assess ten cover crops for their impacts on SCN hatching and penetration into the roots. For each experiment, with four replications per treatment, crops were planted in naturally-infested soil in two separate sets to be harvested 15 and 30 days after planting (DAP). SCN susceptible soybean 'Barnes' and non-planted natural soil (fallow) were used as controls. Faba bean 'Petite', a non-host of SCN, induced the greatest hatching among the cover crops and was statistically similar to soybean. Winter rye 'ND Dylan' also induced significant hatching compared to fallow. Root staining revealed that the highest number of J2 penetrated the faba bean roots at 15 DAP, followed by soybean and winter rye. While J2 penetrated all tested crops, they completed their development to become adult females only in soybean and turnip. Soybean cyst nematode development to adult females did not occur in faba bean, and the number of SCN inside the faba bean roots 30 DAP was significantly lower than at 15 DAP and also lower than in soybean. These results suggest that the faba bean affects SCN biology and has the greatest potential to act as a trap crop for managing SCN. [ABSTRACT FROM AUTHOR]

Two amino acid variants in soybean serine hydroxymethyltransferase 8 (SHMT8) are associated with resistance to the soybean cyst nematode (SCN), a devastating agricultural pathogen with worldwide economic impacts on soybean production. SHMT8 is a cytoplasmic enzyme that catalyzes the pyridoxal 5‐phosphate‐dependent conversion of serine and tetrahydrofolate (THF) to glycine and 5,10‐methylenetetrahydrofolate. A previous study of the P130R/N358Y double variant of SHMT8, identified in the SCN‐resistant soybean cultivar (cv.) Forrest, showed profound impairment of folate binding affinity and reduced THF‐dependent enzyme activity, relative to the highly active SHMT8 in cv. Essex, which is susceptible to SCN. Given the importance of SCN‐resistance in soybean agriculture, we report here the biochemical and structural characterization of the P130R and N358Y single variants to elucidate their individual effects on soybean SHMT8. We find that both single variants have reduced THF‐dependent catalytic activity relative to Essex SHMT8 (10‐ to 50‐fold decrease in kcat/Km) but are significantly more active than the P130R/N368Y double variant. The kinetic data also show that the single variants lack THF‐substrate inhibition as found in Essex SHMT8, an observation with implications for regulation of the folate cycle. Five crystal structures of the P130R and N358Y variants in complex with various ligands (resolutions from 1.49 to 2.30 Å) reveal distinct structural impacts of the mutations and provide new insights into allosterism. Our results support the notion that the P130R/N358Y double variant in Forrest SHMT8 produces unique and unexpected effects on the enzyme, which cannot be easily predicted from the behavior of the individual variants. [ABSTRACT FROM AUTHOR]

As a potent endogenous regulator of homeostasis, the circadian time-keeping system synchronizes internal physiology to periodic changes in the external environment to enhance survival. Adapting endogenous rhythms to the external time is accomplished hierarchically with the central pacemaker located in the suprachiasmatic nucleus (SCN) signaling the hypothalamus-pituitary-adrenal (HPA) axis to release hormones, notably cortisol, which help maintain the body's circadian rhythm. Given the essential role of HPA-releasing hormones in regulating physiological functions, including immune response, cell cycle, and energy metabolism, their daily variation is critical for the proper function of the circadian timing system. In this review, we focus on cortisol and key fundamental properties of the HPA axis and highlight their importance in controlling circadian dynamics. We demonstrate how systems-driven, mathematical modeling of the HPA axis complements experimental findings, enhances our understanding of complex physiological systems, helps predict potential mechanisms of action, and elucidates the consequences of circadian disruption. Finally, we outline the implications of circadian regulation in the context of personalized chronotherapy. Focusing on the chrono-pharmacology of synthetic glucocorticoids, we review the challenges and opportunities associated with moving toward personalized therapies that capitalize on circadian rhythms. [ABSTRACT FROM AUTHOR]

This study explores an eco-friendly approach to synthesizing silver nanoparticles (AgNPs) using soybean leaf extracts, employing a reaction with silver nitrate at 65 °C for 2.5 h. Optimal results were achieved at extract concentrations of 3.12 and 6.25 mg of the leaf mL−1, termed 3.12AgNP and 6.25AgNP, respectively. UV-Vis spectrophotometric analysis between 350 and 550 nm exhibited a peak at 410–430 nm, along with a color transition in the suspensions from pale yellow to brown, indicating successful synthesis. Dynamic light scattering (DLS) further delineated the favorable properties of these AgNPs, including nanometric dimensions (73–104 nm), negative charge, and moderate polydispersity, portraying stable and reproducible synthesis reactions. The bioreduction mechanism, possibly expedited by leaf extract constituents such as amino acids, phenolic acids, and polysaccharides, remains to be fully elucidated. Notably, this study underscored the potent nematicidal effectiveness of biosynthesized AgNPs, especially 6.25AgNP, against Pratylenchus brachyurus, which is a common plant-parasitic nematode in tropical soybean cultivation regions. In vitro tests illustrated significant nematicidal activity at concentrations above 25 µmol L−1, while in vivo experiments displayed a pronounced nematode population diminishment in plant roots, particularly with a 6.25AgNP rhizosphere application at concentrations of 500 µmol L−1 or twice at 250 µmol L−1, attaining a reproduction factor below 1 without any morphological nematode alterations. This research highlights the potential of 6.25AgNPs derived from soybean leaf extracts in forging sustainable nematicidal solutions, marking a significant stride toward eco-friendly phytonematode management in soybean cultivation. This novel methodology signals a promising avenue in harnessing botanical resources for nematode control and propelling a greener agricultural horizon. [ABSTRACT FROM AUTHOR]

Soybean stem canker (SSC) is an important disease caused by different Diaporthe spp., including D. aspalathi, D. caulivora and D. longicolla, that leads to soybean (Glycine max) yield losses around the world. Most studies have been focused on the morphological characterization and molecular identification of Diaporthe spp. present in SSC lesions. Several soybean resistance loci to Diaporthe spp. causing SSC have been identified, although the molecular identities of the resistance genes are at present unknown. In this review, we summarize the current knowledge on SSC disease, the molecular characterization of Diaporthe spp. and their evolutionary relationships. We highlight how recent genomic and transcriptomic information is allowing significant progress in our understanding of the molecular components and mechanisms underlying Diaporthe infection strategies as well as soybean disease resistance. The information generated, combined with available resources enabling functional genomics, will contribute to the development of breeding strategies for disease resistance, leading to a more sustainable agriculture. [ABSTRACT FROM AUTHOR]

Summary: Cyst-forming nematodes of the genus Heterodera are highly derived and economically important plant parasites. The Schachtii group of this genus is one of the largest ones with a total of 18 species parasitising dicotyledons. In this study, we provided comprehensive phylogenetic analyses of several hundred COI and ITS rRNA gene sequences of selected species from the Schachtii group, including H. betae , H. cajani , H. ciceri , H. galeopsidis , H. glycines , H. medicaginis , H. mediterranea , H. schachtii , H. sonchophila and H. trifolii , using Bayesian inference, maximum likelihood, and statistical parsimony. One hundred and twenty four new COI , 57 ITS rRNA and eight hsp90 gene sequences from 81 nematode populations collected in 19 countries were obtained in this study. Our study showed that the ITS rRNA gene has limited discrimination power compared to the COI gene. However, our analysis also revealed that partial COI gene sequences were identical for H. trifolii , H. betae and H. galeopsidis. Based on the results of phylogeographical analysis and age estimation of clades with a molecular clock approach, it was hypothesised that the majority of the Schachtii group species originated and diversified in the Mediterranean Basin biodiversity hotspot during the Pleistocene and then dispersed from this region across the world. The Sino-Japanese Floristic Region is likely one of the centres of diversification for the soybean cyst nematode, which showed distinct population structure. The possible role of hybridisation and polyploidisation in the evolution of species of the Schachtii group is discussed. [ABSTRACT FROM AUTHOR]

Cowpea mild mottle virus (CPMMV), a carlavirus nonpersistently transmitted by whiteflies, is an emerging and economically important virus of soybean. The present study aimed to identify soybean genotypes resistant to CPMMV through mechanical inoculation‐based phenotyping and marker trait association using gene‐specific and simple‐sequence repeat (SSR) markers. A set of 500 soybean genotypes was initially screened in the field for CPMMV infection, of which 288 genotypes showing resistance were evaluated further under controlled glasshouse conditions. Among these 288 genotypes, 43 (14.9%) were resistant, 59 (20.5%) were moderately resistant while the remaining 186 (64.6%) were susceptible. A set of five gene‐specific primer pairs, three of which targeted CPMMV R genes, was used for screening the 288 soybean genotypes; 96 genotypes from the 288 (based on disease score) were also genotyped with 24 SSR polymorphic markers for an association study. The mean values of major allele frequency and gene diversity were found to be 0.70 and 0.39, respectively. The polymorphism information content varied from 0.14 to 0.37. Population structure and cluster analysis revealed three subpopulations for the five gene‐specific markers and two distinct subpopulations for the 24 SSR markers, respectively. Neighbour joining‐based clustering analysis categorized the 288 genotypes into two major clusters. Three markers were found to be significantly associated with CPMMV resistance. The BARCSOYSSR0558 marker showed the highest phenotypic variance of 9.6%. The present study will help in identification of CPMMV R genes and breeding new resistant varieties through marker‐assisted selection. [ABSTRACT FROM AUTHOR]

Nematodes, commonly called roundworms, represent one of the largest phyla of animals. Plant‐parasitic nematodes cause significant economic losses in major crops worldwide, and cyst nematodes (Heterodera spp. and Globodera spp.) are among the most damaging species. This review focuses on three main species, Globodera pallida, Globodera rostochiensis and Globodera ellingtonae, collectively known as potato cyst nematodes (PCNs). G. rostochiensis and G. pallida are the most commonly occurring species in potato‐growing areas and are considered to have originated from the Andes region in South America and introduced then to Europe in the 1850s and now occur globally in more than 75 countries. PCNs feed entirely inside the root and produce distinctive cysts containing eggs. PCNs reduce root development, stunt the growth of potato plants and ultimately lead to the production of fewer and smaller tubers. PCNs are feared because of their ability to survive for up to 40 years in the soil in the absence of potatoes, and once established they are incredibly difficult to eradicate. Five case studies in this review provide an historical overview of how scientists and potato experts have responded to PCN pandemics and the effectiveness of management strategies. [ABSTRACT FROM AUTHOR]

Cyst producing nematodes are persistent soil-borne organisms causing severe damage to cultivated plants. Persistence of the economically relevant cyst nematode species Globodera pallida, G. rostochiensis and Heterodera schachtii was investigated at different stages during a large-scale industrial composting process to evaluate its efficiency to prevent spread of these nematodes into natural and agricultural habitats. Using reference cyst nematodes incorporated into organic waste from households and the processing industry, the effect of anaerobic fermentation and aerobic composting processes were investigated. Treated cysts were analysed for viability and reproductive potential by performing hatching tests and bioassays on susceptible host plants. The investigated composting plant showed temperatures between 40 and 72 °C at aerobic composting conditions depending on the sample position (bottom, middle, top) within the pile. We found no viable juveniles or reproductive potential of Globodera spp. (Loof and Bakker 1992) and less than 5 per cent reproduction of H. schachtii. Additionally to temperature conditions, we presume that competition of the microbial community and their released biodigestants like fatty acids also play a major role in successful treatment of these severe pest organisms. [ABSTRACT FROM AUTHOR]

The purpose of this study was to evaluate the efficiency of Pseudomonas aeruginosa strain Dokkala (OK383444) isolate against cyst nematode Globodera pallida strain Dokkala (MZ959187) as a biocontrol agent on potato cyst nematode. The test was first conducted in vitro with bacterial suspensions at 105, 106, 107 and 108 CFU/mL against 100 eggs, 100 second-stage juveniles (J2), and 10 cysts of G. pallida and then in vivo on potato variety Desiree infested by cyst nematode in the greenhouse. Four plant growing parameters were evaluated in the treated potato plants by P. aeruginosa in the presence of G. pallida; plant height (cm), tuber weight (kg), wet and dry weight (kg) of the aerial part, and root length (cm). The application of P. aeruginosa in vitro reduced the rate of eggs of G. pallida by 42% and juveniles by 56%. However, the percentages of colonized females with bacteria were not significant (8% and 16% after 96 and 240 h, respectively), whereas normal J2 controls hatched at 100% after 48 h. Furthermore, the in vivo treatment showed an enhancement of 650 g in tuber weight and 19.2 cm in plant length compared to untreated G. Pallida infested plants and 33.34% colonized cysts. This research clearly indicates the ability of P. aeruginosa to reduce the density of potato cyst nematodes and has the potential for the biological control of G. pallida. [ABSTRACT FROM AUTHOR]

The soybean cyst nematode (SCN) is one of the most damaging pests affecting soybean production. SCN displays important host recognition behaviors, such as hatching and infection, by recognizing several compounds produced by the host. Therefore, controlling SCN behaviors such as chemotaxis and thermotaxis is an attractive pest control strategy. In this study, we found that cyclic nucleotide-gated channels (CNG channels) regulate SCN chemotaxis and thermotaxis and Hg-tax-2 , a gene encoding a CNG channel, is an important regulator of SCN behavior. Gene silencing of Hg-tax-2 and treatment with a CNG channel inhibitor reduced the attraction of second-stage juveniles to nitrate, an attractant with a different recognition mechanism from the host-derived chemoattractant(s), and to host soybean roots, as well as their avoidance behavior toward high temperatures. Co-treatment of ds Hg-tax-2 with the CNG channel inhibitor indicated that Hg-tax-2 is a major regulator of SCN chemotaxis and thermotaxis. These results suggest new avenues for research on control of SCN. [Display omitted] • The gene Hg-tax-2 was identified in soybean cyst nematode (SCN). • Hg-tax-2 encodes cyclic nucleotide-gated channels (CNG channels). • RNAi of Hg-tax-2 disrupted SCN chemotaxis and thermotaxis. • CNG channel inhibitors disrupted SCN chemotaxis and thermotaxis. • Among CNG channels, Hg-tax-2 is a major regulator of SCN behavior. [ABSTRACT FROM AUTHOR]

Soybean cyst nematode (SCN, Heterodera glycines, Ichinohe) poses a significant threat to global soybean production, necessitating a comprehensive understanding of soybean plants' response to SCN to ensure effective management practices. In this study, we conducted dual RNA-seq analysis on SCN-resistant Plant Introduction (PI) 437654, 548402, and 88788 as well as a susceptible line (Lee 74) under exposure to SCN HG type 1.2.5.7. We aimed to elucidate resistant mechanisms in soybean and identify SCN virulence genes contributing to resistance breakdown. Transcriptomic and pathway analyses identified the phenylpropanoid, MAPK signaling, plant hormone signal transduction, and secondary metabolite pathways as key players in resistance mechanisms. Notably, PI 437654 exhibited complete resistance and displayed distinctive gene expression related to cell wall strengthening, oxidative enzymes, ROS scavengers, and Ca2+ sensors governing salicylic acid biosynthesis. Additionally, host studies with varying immunity levels and a susceptible line shed light on SCN pathogenesis and its modulation of virulence genes to evade host immunity. These novel findings provide insights into the molecular mechanisms underlying soybean–SCN interactions and offer potential targets for nematode disease management. [ABSTRACT FROM AUTHOR]

Sonodynamic therapy (SDT) utilizes ultrasound‐irradiating sonosensitizers to convert ultrasonic vibrations into chemical energy and produce reactive oxygen species (ROS) that cause cell apoptosis or necrosis. SDT demonstrates significant potential in the treatment of deep tumors without normal tissue damage. Rapid advances in the efficacy of SDT have enabled the rational design and construction of novel intelligent sonocatalytic nanoagents (SCNs) with various functions for versatile biomedical applications. Herein, the most recent critical advancements in intelligent SCNs for energy conversion‐based therapies are discussed. Typical SCNs including organic molecules, organic micro‐/nanoparticles, inorganic micro‐/nanoparticles, organic/inorganic hybrids, and piezoelectric materials are introduced and summarized in detail. Furthermore, these intelligent SCNs are designed for different energy conversion‐based therapies such as SDT, SDT‐assisted chemotherapy, SDT‐assisted photodynamic therapy, SDT‐assisted photothermal therapy, SDT‐assisted gas therapy, SDT‐assisted sonoporation from the cell membrane to the blood brain barrier, and high‐intensity focused ultrasound‐based sonothermal therapy. It is believed that this review will provide an overview of the application of intelligent SCNs in sonodynamic therapies to better understand the limitations and challenges of these SCNs and further promote their advancements for a broad range of biomedical applications. [ABSTRACT FROM AUTHOR]

Melatonin is an endogenous indoleamine that plays a significant role in various physiological processes, including the sleep-wake cycle, anxiety, immunity, and circadian rhythms. However, it is important to clarify that melatonin does not directly control circadian rhythms. Circadian rhythms are primarily synchronized by light, which acts on the suprachiasmatic nucleus (SCN) and subsequently regulates melatonin production. This light-mediated synchronization of circadian rhythms is essential for maintaining the alignment of the body with the light-dark cycle. In this study, we investigated the efficacy of melatonin administration during different times of the day or night and explored its neuroprotective effects. Furthermore, we aimed to apply these findings to rodent models of dementia, aging, and neuro-inflammation for potential therapeutic applications. Our study uncovered novel evidence suggesting the involvement of RNA-binding motif protein (RBM)-47 and Nrf2 in the signaling pathways associated with melatonin administration during both day and night. We examined the role of RBM47 in Nrf2 activity through siRNA or CRISPR-mediated knockdown experiments using hippocampal neuronal cells and lentivirus injections in mice. In 5xFAD/aging/neuroinflammatory mouse models, antioxidant effects were enhanced when melatonin was administered during the day compared to nighttime administration. Furthermore, mRNA analysis and molecular biology experiments revealed the differential expression of RBM47 depending on the timing of melatonin administration. These findings suggest that a decrease in RBM47 expression may improve the antioxidant defense system in the hippocampus. Consequently, administering melatonin during the day rather than at night may present a plausible therapeutic strategy as an antioxidant. [Display omitted] • RBM-47 and Nrf2 are involved in melatonin administration-associated pathways. • Daytime administration of melatonin increases antioxidant effects in mouse models. • RBM47 is differentially expressed depending on the time of melatonin administration. • Decreased RBM47 expression may improve the antioxidant defense system. • Melatonin administration during the day may serve as a therapeutic strategy. [ABSTRACT FROM AUTHOR]

This study aimed to evaluate the suppressive potential of different soils on soybean cyst nematodes (SCN) and to estimate the suppressive mechanism. Fifteen soils (designated as soil A to O) from different agricultural fields with varying organic inputs were added with SCN-infested soil and grown with a green soybean variety. The SCN density in the soil at 6 weeks of soybean growth was markedly different depending on the soils used, indicating a different level of disease suppressiveness. No significant correlation was observed between the SCN density and any of the soil physicochemical and biological characteristics tested. Then, to estimate a suppression mechanism, F-soil that showed the lowest density of SCN was added to the SCN-infested soil with or without streptomycin to kill bacteria and grown with soybean. SCN density was not increased by the addition of streptomycin, indicating that soil bacteria may not be involved in the suppressiveness of F-soil. In total, 128 fungal strains were isolated from the rhizosphere of F-soil and inoculated in a combination or singly in the SCN-infested soil. After repeated screenings, five strains were selected since the SCN density was consistently decreased by them. Sequence analysis showed that they were closest to Clonostachys rosea, Aspergillus niger, Aspergillus fumigatus, Fusarium oxysporum, and Cylindrodendrum alicantinum. All five strains significantly reduced the mobility of second-stage juveniles (J2). Further, C. rosea a2, A. niger a8, and F. oxysporum a25 significantly decreased hatching. Overall, the present study demonstrated that soil fungi played an important role in SCN suppression in F-soil. [ABSTRACT FROM AUTHOR]

Soybean is an important oilseed crop that is used as a feed for livestock and has several industrial uses. Lipid biosynthesis and accumulation primarily occur during seed development in plants. This process is regulated by several transcription factors and interconnected biochemical pathways. This study investigated the role of glycine max LEAFY COTYLEDON 1 (GmLEC1) in soybean seed development and the accumulation of storage reserves. The overexpression of GmLEC1 significantly increased the amount of triacylglycerol (TAG) in transgenic Arabidopsis seeds compared to the wild-type and an atlec1 mutant. Similarly, the high expression of GmLEC1 led to a 12% increase in TAG content in transgenic soybean hairy roots compared to the control. GmLEC1 also altered the fatty acid composition in transgenic Arabidopsis seeds and soybean hairy roots. Additionally, the overexpression of GmLEC1 resulted in a reduction in starch accumulation in seeds and vegetative tissues, as well as changes in cotyledon and seed morphology. The cotyledons of the atlec1 mutant displayed abnormal trichome development, and the seeds were smaller and less tolerant to desiccation. A complementation assay in Arabidopsis restored normal cotyledon phenotype and seed size. The main downstream targets of LEC1 are GL2 and WRI1, which were found to participate in fatty acid biosynthesis and trichome formation through the regulation of phytohormones and various transcription factors involved in seed development and maturation. The findings of this study suggest that GmLEC1 controls seed development and regulates the accumulation of seed storage compounds. Furthermore, these results demonstrate that GmLEC1 could be a reliable target for the genetic improvement of oil biosynthesis in soybean. [ABSTRACT FROM AUTHOR]

Vinasse is not only effectively used in pest control but also creates a conducive environment for the growth of antagonistic microorganisms. Thus, this study aimed to evaluate the potential of vinasse applied via soil for the management of root-knot nematodes in soybean culture. The experimental design was entirely random, in a factorial scheme (2 × 6), consisting of two species of nematodes, Meloidogyne incognita and M. javanica, under vinasse application at five concentrations (20, 40, 60, 80, and 100%) and one control (water), with five repetitions. Soybean plants Intacta cv. M-Soy 8644 IPRO were inoculated with 4000 eggs/juveniles of each species separately. At 60 days after the first application of vinasse, evaluations of parasitism and agronomic characteristics in soybean were performed. Stillage resulted in the highest average values for root volume and root fresh mass in plants inoculated with M. incognita, showing respective increases of 24.33% and 14.92% compared to plants inoculated with M. javanica. However, concentrations exceeding 60% had a detrimental effect on all agronomic variables of soybean. For parasitism, an interaction among the factors was observed, with a significant effect (p < 0.01) for most of the evaluated variables, except for the number of eggs in the soil. The concentration equivalent to 60% vinasse promoted a sharp reduction in parasitism for the two nematode species, making reproduction on plant roots unfeasible. [ABSTRACT FROM AUTHOR]

The mammalian circadian clock is located in the suprachiasmatic nucleus (SCN) and consists of a network of coupled neurons, which are entrained to the environmental light-dark cycle. The phase coherence of the neurons is plastic and driven by the duration of daylight. With aging, the capacity to behaviorally adapt to seasonal changes in photoperiod reduces. The mechanisms underlying photoperiodic adaptation are largely unknown, but are important to unravel for the development of novel interventions to improve the quality of life of the elderly. We analyzed the phase coherence of single-cell PERIOD2::LUCIFERASE (PER2::LUC) expression rhythms in the SCN of young and old mice entrained to either long or short photoperiod. The phase coherence was used as input to a 2-community noisy Kuramoto model to estimate the coupling strength between and within neuronal subpopulations. The model revealed a correlation between coupling strength and photoperiod-induced changes in the phase relationship among neurons, suggesting a functional link. We found that the SCN of young mice adapts in coupling strength over a large range, with weak coupling in long photoperiod (LP) and strong coupling in short photoperiod (SP). In aged mice, we also found weak coupling in LP, but a reduced capacity to reach strong coupling in SP. The inability to respond with an increase in coupling strength suggests that manipulation of photoperiod is not a suitable strategy to enhance clock function with aging. We conclude that the inability of aged mice to reach strong coupling contributes to deficits in behavioral adaptation to seasonal changes in photoperiod. [ABSTRACT FROM AUTHOR]

Nematode migration, feeding site formation, withdrawal of plant assimilates, and activation of plant defence responses have a significant impact on plant growth and development. Plants display intraspecific variation in tolerance limits for root-feeding nematodes. Although disease tolerance has been recognized as a distinct trait in biotic interactions of mainly crops, we lack mechanistic insights. Progress is hampered by difficulties in quantification and laborious screening methods. We turned to the model plant Arabidopsis thaliana , since it offers extensive resources to study the molecular and cellular mechanisms underlying nematode–plant interactions. Through imaging of tolerance-related parameters, the green canopy area was identified as an accessible and robust measure for assessing damage due to cyst nematode infection. Subsequently, a high-throughput phenotyping platform simultaneously measuring the green canopy area growth of 960 A. thaliana plants was developed. This platform can accurately measure cyst nematode and root-knot nematode tolerance limits in A. thaliana through classical modelling approaches. Furthermore, real-time monitoring provided data for a novel view of tolerance, identifying a compensatory growth response. These findings show that our phenotyping platform will enable a new mechanistic understanding of tolerance to below-ground biotic stress. [ABSTRACT FROM AUTHOR]

Summary: BAK1‐INTERACTING RECEPTOR LIKE KINASE1 (BIR1) is a negative regulator of various aspects of disease resistance and immune responses.Here, we investigated the functional role of soybean (Glycine max) BIR1 (GmBIR1) during soybean interaction with soybean cyst nematode (SCN, Heterodera glycines) and the molecular mechanism through which GmBIR1 regulates plant immunity.Overexpression of wild‐type variant of GmBIR1 (WT‐GmBIR1) using transgenic soybean hairy roots significantly increased soybean susceptibility to SCN, whereas overexpression of kinase‐dead variant (KD‐GmBIR1) significantly increased plant resistance. Transcriptome analysis revealed that genes oppositely regulated in WT‐GmBIR1 and KD‐GmBIR1 upon SCN infection were enriched primarily in defense and immunity‐related functions. Quantitative phosphoproteomic analysis identified 208 proteins as putative substrates of the GmBIR1 signaling pathway, 114 of which were differentially phosphorylated upon SCN infection. In addition, the phosphoproteomic data pointed to a role of the GmBIR1 signaling pathway in regulating alternative pre‐mRNA splicing. Genome‐wide analysis of splicing events provided compelling evidence supporting a role of the GmBIR1 signaling pathway in establishing alternative splicing during SCN infection.Our results provide novel mechanistic insights into the function of the GmBIR1 signaling pathway in regulating soybean transcriptome and spliceome via differential phosphorylation of splicing factors and regulation of splicing events of pre‐mRNA decay‐ and spliceosome‐related genes. [ABSTRACT FROM AUTHOR]

Asian soybean rust (ASR), caused by Phakopsora pachyrhizi, is one of the most destructive foliar diseases that affect soybeans. Developing resistant cultivars is the most cost-effective, environmentally friendly, and easy strategy for controlling the disease. However, the current understanding of the mechanisms underlying soybean resistance to P. pachyrhizi remains limited, which poses a significant challenge in devising effective control strategies. In this study, comparative transcriptomic profiling using one resistant genotype and one susceptible genotype was performed under infected and control conditions to understand the regulatory network operating between soybean and P. pachyrhizi. RNA-Seq analysis identified a total of 6540 differentially expressed genes (DEGs), which were shared by all four genotypes. The DEGs are involved in defense responses, stress responses, stimulus responses, flavonoid metabolism, and biosynthesis after infection with P. pachyrhizi. A total of 25,377 genes were divided into 33 modules using weighted gene co-expression network analysis (WGCNA). Two modules were significantly associated with pathogen defense. The DEGs were mainly enriched in RNA processing, plant-type hypersensitive response, negative regulation of cell growth, and a programmed cell death process. In conclusion, these results will provide an important resource for mining resistant genes to P. pachyrhizi infection and valuable resources to potentially pyramid quantitative resistance loci for improving soybean germplasm. [ABSTRACT FROM AUTHOR]

Soybean ranks second by total production of all crops grown in the United States. From surveys of soybean production regions in the US and Canada, seedling diseases have been consistently identified as one of the top five biotic limitations on yield for over two decades. The role of Fusarium graminearum as an aggressive member of this complex was unknown until relatively recently and, consequently, publicly and commercially available varieties with resistance to this pathogen are unavailable. To address the need for resistant germplasm and to improve our understanding of the genetic basis underlying the resistance, we screened a set of 208 accessions of soybean from the United States Department of Agriculture Soybean Germplasm Collection (USDA-SGC) under controlled greenhouse conditions. A ratio of the root weight of inoculated plants compared to mock-inoculated controls was used to evaluate the degree of resistance. A linear mixed model identified eight resistant accessions (PI 548311, PI 438500, PI 561318 A, PI 547690, PI 391577, PI 157484, PI 632418, and PI 70466 -3) with significantly higher resistance than the population mean. Previous genotyping publicly available through the SoyBase database was used in a genome-wide association study (GWAS) to determine single nucleotide polymorphism (SNP) markers associated with resistant and susceptible phenotypes. A total of five significant marker-trait associations (MTAs) were discovered on chromosomes Gm02, Gm03, Gm06, Gm07, and Gm13, each accounting for 4.8, 4.3, 3.8, 4.1, and 3.0% of the phenotypic variance, respectively. This study, thus, lays a foundation for the better dissection of germplasm resistant to F. graminearum. [ABSTRACT FROM AUTHOR]

Soybean stem canker (SSC) caused by the fungal pathogen Diaporthe caulivora is an important disease affecting soybean production worldwide. However, limited information related to the molecular mechanisms underlying soybean resistance to Diaporthe species is available. In the present work, we analyzed the defense responses to D. caulivora in the soybean genotypes Williams and Génesis 5601. The results showed that compared to Williams, Génesis 5601 is more resistant to fungal infection evidenced by significantly smaller lesion length, reduced disease severity and pathogen biomass. Transcriptional profiling was performed in untreated plants and in D. caulivora-inoculated and control-treated tissues at 8 and 48 h post inoculation (hpi). In total, 2.322 and 1.855 genes were differentially expressed in Génesis 5601 and Williams, respectively. Interestingly, Génesis 5601 exhibited a significantly higher number of upregulated genes compared to Williams at 8 hpi, 1.028 versus 434 genes. Resistance to D. caulivora was associated with defense activation through transcriptional reprogramming mediating perception of the pathogen by receptors, biosynthesis of phenylpropanoids, hormone signaling, small heat shock proteins and pathogenesis related (PR) genes. These findings provide novel insights into soybean defense mechanisms leading to host resistance against D. caulivora, and generate a foundation for the development of resistant SSC varieties within soybean breeding programs. [ABSTRACT FROM AUTHOR]