127 results on '"S, Keränen"'
Search Results
2. Introducing VTT-ConIot: A Realistic Dataset for Activity Recognition of Construction Workers Using IMU Devices
- Author
-
Satu-Marja Mäkela, Arttu Lämsä, Janne S. Keränen, Jussi Liikka, Jussi Ronkainen, Johannes Peltola, Juha Häikiö, Sari Järvinen, and Miguel Bordallo López
- Subjects
human activity recognition ,construction ,IoT ,Environmental effects of industries and plants ,Human Activity Recognition ,TJ807-830 ,TD194-195 ,IMU ,Renewable energy sources ,Environmental sciences ,SDG 3 - Good Health and Well-being ,GE1-350 ,SDG 7 - Affordable and Clean Energy ,Construction - Abstract
Sustainable work aims at improving working conditions to allow workers to effectively extend their working life. In this context, occupational safety and well-being are major concerns, especially in labor-intensive fields, such as construction-related work. Internet of Things and wearable sensors provide for unobtrusive technology that could enhance safety using human activity recognition techniques, and has the potential of improving work conditions and health. However, the research community lacks commonly used standard datasets that provide for realistic and variating activities from multiple users. In this article, our contributions are threefold. First, we present VTT-ConIoT, a new publicly available dataset for the evaluation of HAR from inertial sensors in professional construction settings. The dataset, which contains data from 13 users and 16 different activities, is collected from three different wearable sensor locations.Second, we provide a benchmark baseline for human activity recognition that shows a classification accuracy of up to 89% for a six class setup and up to 78% for a sixteen class more granular one. Finally, we show an analysis of the representativity and usefulness of the dataset by comparing it with data collected in a pilot study made in a real construction environment with real workers.
- Published
- 2022
- Full Text
- View/download PDF
3. Ein tierexperimentelles Modell zur Verbesserung der Organkonservierung bei Lungentransplantation
- Author
-
C.F. Vahl, H. Taspinar, S. Keränen, Ö Senbaklavaci, and M. Hartert
- Subjects
Pulmonary and Respiratory Medicine ,Gynecology ,medicine.medical_specialty ,business.industry ,medicine ,Surgery ,Cardiology and Cardiovascular Medicine ,business - Abstract
Der zunehmende Bedarf an Lungentransplantationen, bei gleichzeitigem Ruckgang an verfugbaren Spenderorganen, macht es einerseits notwendig, weite Transportwege und damit Ischamiezeiten in Kauf zu nehmen, andererseits die Qualitatsgrenzen der Spenderorgane zu erweitern. Die Anforderungen an eine zuverlassige Konservierungsmethode sind daher hoch. Als klinischer Standard gilt nach wie vor das Spulen der Pulmonalarterie mit der Perfadex-Losung bei 4°C. Unser Projekt hat zum Ziel, diese Konservierungsmethode mit Zusatz von CNI-1493 bzw. Compstatin zu verbessern. Die Versuche dazu werden an einem isolierten Organmodell durchgefuhrt.
- Published
- 2012
- Full Text
- View/download PDF
4. The freezing method of cleavage stage embryos has no impact on the weight of the newborns
- Author
-
Kirsi Kananen, Helena Tinkanen, Heini Huhtala, Noora Kaartinen, and S. Keränen
- Subjects
0301 basic medicine ,Adult ,Male ,animal structures ,Pregnancy Rate ,Birth weight ,Fertilization in Vitro ,Cryopreservation ,Andrology ,Cohort Studies ,03 medical and health sciences ,0302 clinical medicine ,Embryo cryopreservation ,Pregnancy ,Genetics ,medicine ,Birth Weight ,Humans ,Vitrification ,Blastocyst ,Assisted Reproduction Technologies ,Birth Rate ,Genetics (clinical) ,Retrospective Studies ,030219 obstetrics & reproductive medicine ,Chemistry ,Infant, Newborn ,Obstetrics and Gynecology ,Embryo ,General Medicine ,Embryo Transfer ,Embryo transfer ,Pregnancy rate ,030104 developmental biology ,medicine.anatomical_structure ,Reproductive Medicine ,embryonic structures ,Female ,Developmental Biology - Abstract
The aim of this study was to study the effect of the embryo freezing method on the birth weight of newborns from frozen embryo transfer (FET) cycles, and the pregnancy results of cleavage stage embryos cryopreserved by slow freezing or vitrification.This is a retrospective cohort study undertaken in a University Hospital IVF unit using concurrently both the slow-freezing and the vitrification techniques. All frozen-thawed and vitrified-warmed day 2 and day 3 embryo transfers during the time period from 1 April 2009 to 31 November 2013 were included in the study.There was no statistically significant weight difference between newborns from vitrified or slow-frozen embryos (3588 vs 3670 g). A higher post-thaw viability rate was achieved after cryopreservation by the vitrification technique compared to the slow-freezing protocol (83.4 vs 61.4%). The miscarriage rate was lower in the vitrification group (15.7 vs 29.0%). The live birth rates were similar (19.5 vs 19.1%) in the slow-freezing and vitrification groups, respectively. Among vitrified embryos, 7.4 embryos needed to be thawed to produce one delivery; in the slow-freezing group, that number was 11.9.The freezing method has no impact on the weight of the newborn. With lower post-thaw survival rates and higher miscarriage rates, the slow-freezing cryopreservation protocol is inferior to the vitrification technique.
- Published
- 2016
5. Integrating Human Centred Design (HCD) with the Development and Quality Assurance Process of Integrated Software Dependent Systems (ISDS)
- Author
-
Dnv Gl and S Keränen
- Subjects
Process management ,Process (engineering) ,business.industry ,Computer science ,Integrated software ,business ,Quality assurance - Published
- 2015
- Full Text
- View/download PDF
6. The influence of cosubstrate and aeration on xylitol formation by recombinantSaccharomyces cerevisiae expressing theXYL1 gene
- Author
-
M. F. Gorwa, M. Pentillä, B. Hahn-Hëgerdal, Johan Hallborn, Nina Meinander, and S. Keränen
- Subjects
Genes, Fungal ,Saccharomyces cerevisiae ,Biology ,Xylose ,Xylitol ,Applied Microbiology and Biotechnology ,Pichia ,Cofactor ,Substrate Specificity ,chemistry.chemical_compound ,Transformation, Genetic ,Aldehyde Reductase ,Glycerol ,Ethanol metabolism ,Pichia stipitis ,Ethanol ,food and beverages ,General Medicine ,NAD ,biology.organism_classification ,Aerobiosis ,Yeast ,carbohydrates (lipids) ,Kinetics ,Glucose ,chemistry ,Biochemistry ,biology.protein ,NADP ,Biotechnology - Abstract
Xylitol formation by a recombinant Saccharomyces cerevisiae strain containing the XYL1 gene from Pichia stipitis CBS 6054 was investigated under three sets of conditions: (a) with glucose, ethanol, acetate, or glycerol as cosubstrates, (b) with different oxygenation levels, and (c) with different ratios of xylose to cosubstrate. With both glucose and ethanol the conversion yields were close to 1 g xylitol/g consumed xylose. Decreased aeration increased the xylitol yield on the basis of consumed cosubstrate, while the rate of xylitol formation decreased. The xylitol yield based on consumed cosubstrate also increased with increased-xylose:cosubstrate ratios. The transformant utilized the cosubstrate more efficiently than did a reference strain in terms of utilization rate and growth rate, implying that the regeneration of NAD(P)+ during xylitol formation by the transformant balanced the intracellular redox potential.
- Published
- 1994
- Full Text
- View/download PDF
7. Characterization of the sec1-1 and sec1-11 mutations
- Author
-
M H, Brummer, K J, Kivinen, J, Jäntti, J, Toikkanen, H, Söderlund, and S, Keränen
- Subjects
Saccharomyces cerevisiae Proteins ,Protein Conformation ,Blotting, Western ,Molecular Sequence Data ,Vesicular Transport Proteins ,Membrane Proteins ,Nerve Tissue Proteins ,Saccharomyces cerevisiae ,Polymerase Chain Reaction ,Fungal Proteins ,Munc18 Proteins ,Two-Hybrid System Techniques ,Mutation ,Amino Acid Sequence ,Cloning, Molecular ,SNARE Proteins ,Antibodies, Fungal - Abstract
Sec1 proteins are implicated in positive and negative regulation of SNARE complex formation. To better understand the function of Sec1 proteins we have identified the nature of the temperature-sensitive mutations in sec1-1 and sec1-11. The sec1-1 mutation changes a conserved glycine(443) to glutamic acid. The sec1-11 mutation changes a highly conserved arginine(432) to proline. Based on homology and the crystal structure of the mammalian nSec1p, the corresponding amino acids localize to the 3b domain of nSec1p. Compared to the wild-type Sec1p the mutant proteins are less abundant even at the permissive temperature. Thus, the R432P and G443E mutations may cause structural alterations that affect folding and make the mutant proteins more susceptible to degradation. The remaining part is sufficient for growth and protein secretion at 24 degrees C and thus is likely to be properly folded. At 37 degrees C the mutant proteins become non-functional. In pulse-chase-type experiments the newly synthesized Sec1-1 and Sec1-11 proteins decayed similarly with the wild-type protein. Thus, the non-functionality of the mutant proteins cannot be explained by denaturation-induced degradation only. It is possible that the newly synthesized mutant proteins fold slowly and are susceptible to degradation before they have managed to fold and associate with other proteins. The mutant proteins were unable to interact with the Sec1p-interacting proteins Mso1p and Sso2p in the two-hybrid assay, even at the permissive temperature. These results localize sec1-1 and sec1-11 mutations to a domain of Sec1p and suggest a mechanism by which sec1-1 and sec1-11 cells become temperature-sensitive.
- Published
- 2001
8. Trichoderma reesei rho3 a homologue of yeast RH03 suppresses the growth defect of yeast sec15-1 mutation
- Author
-
T, Vasara, M, Saloheimo, S, Keränen, and M, Penttilä
- Subjects
Trichoderma ,rho GTP-Binding Proteins ,Saccharomyces cerevisiae Proteins ,Molecular Sequence Data ,Vesicular Transport Proteins ,Saccharomyces cerevisiae ,Fungal Proteins ,Suppression, Genetic ,GTP-Binding Proteins ,Mutation ,Amino Acid Sequence ,Cloning, Molecular ,Sequence Analysis ,Cytoskeleton - Abstract
The Trichoderma reesei gene, rho3, encoding the functional homologue of the Saccharomyces cerevisiae small GTP-binding protein Rho3p was cloned as a suppressor of the secretion-deficient mutation sec15-1 in yeast. The encoded protein showed 61% amino acid identity to the Rho3 protein. Rescue of the growth defect of a RHO3 disruption strain by an expression vector carrying rho3 cDNA confirmed the functional homology with the S. cerevisiae RHO3 gene. In addition, overproduction of T. reesei RHOIII in this yeast strain appeared to improve the actin organization and chitin localization of the cells. Three putative mutant (rho3Gly20Val alleles of the T. reesei rho3 gene rho3 Thr25Asn, rho3Asp12Ala) were introduced into the wild-type yeast, in yeast with sec15 mutation and in yeast with Rho3p depletion. Cells expressing rho3Gly20Val displayed wild-type growth and those expressing rho3 Thr25Asn and rho3Asp126Ala had a loss-of-function phenotype.
- Published
- 2001
9. The GDI1 genes from Kluyveromyces lactis and Pichia pastoris: cloning and functional expression in Saccharomyces cerevisiae
- Author
-
M H, Brummer, P, Richard, L, Sundqvist, R, Väänänen, and S, Keränen
- Subjects
Kluyveromyces ,Base Sequence ,Sequence Homology, Amino Acid ,Genetic Complementation Test ,Molecular Sequence Data ,Amino Acid Sequence ,Saccharomyces cerevisiae ,Cloning, Molecular ,Pichia ,Recombinant Proteins ,Guanine Nucleotide Dissociation Inhibitors - Abstract
The nucleotide sequences of 2.8 kb and 2.9 kb fragments containing the Kluyveromyces lactis and Pichia pastoris GDI1 genes, respectively, were determined. K. lactis GDI1 was found during sequencing of a genomic library clone, whereas the P. pastoris GDI1 was obtained from a genomic library by complementing a Saccharomyces cerevisiae sec19-1 mutant strain. The sequenced DNA fragments contain open reading frames of 1338 bp (K.lactis) and 1344 bp (P. pastoris), coding for polypeptides of 445 and 447 residues, respectively. Both sequences fully complement the S. cerevisiae sec19-1 mutation. They have high degrees of homology with known GDP dissociation inhibitors from yeast species and other eukaryotes.
- Published
- 2001
10. Modes of action on cotton and bacterial cellulose of a homologous endoglucanase-exoglucanase pair from Trichoderma reesei
- Author
-
M Srisodsuk, Karen Kleman-Leyer, T K Kirk, Tuula T. Teeri, and S Keränen
- Subjects
Cellulase ,Biochemistry ,Substrate Specificity ,chemistry.chemical_compound ,Cellulose 1,4-beta-Cellobiosidase ,Cellulose ,Mode of action ,Trichoderma reesei ,Trichoderma ,Gossypium ,Chromatography ,Binding Sites ,biology ,Bacteria ,Chemistry ,Substrate (chemistry) ,biology.organism_classification ,Chromatography, Ion Exchange ,Microcrystalline cellulose ,Bacterial cellulose ,biology.protein ,Crystallization - Abstract
The endoglucanase I (EGI) and the cellobiohydrolase I (CBHI) of the filamentous fungus Trichoderma reesei form a homologous pair of cellulolytic enzymes which nevertheless have different modes of action. We show here that the action of CBHI on bacterial microcrystalline cellulose results in efficient solubilisation but only a slow decrease in its degree of polymerisation. In contrast, the action of EGI results in a rapid decrease of the degree of polymerisation but less efficient overall solubilisation of the substrate. CBHI alone was practically inactive toward cotton which has a high initial degree of polymerisation and a complex morphology. EGI rapidly reduced the degree of polymerisation of cotton, and slowly solubilised part of it. Working synergistically, EGI and CBHI solubilised cotton more rapidly and to a greater extent than EGI alone. Our data are consistent with the exoglucanase nature of CBHI and also provide some evidence supporting its processive mode of action.
- Published
- 1998
- Full Text
- View/download PDF
11. Functional analysis of the cellobiohydrolase I promoter of the filamentous fungus Trichoderma reesei
- Author
-
S. Keränen, Marja Ilmen, S. Klemsdal, M.-L. Onnela, and Merja Penttilä
- Subjects
Glucose repression ,Sophorose ,TATA box ,Molecular Sequence Data ,Repressor ,lac operon ,Biology ,Induction ,Fungal Proteins ,chemistry.chemical_compound ,Cellulase ,Gene Expression Regulation, Fungal ,Genetics ,Cellulose 1,4-beta-Cellobiosidase ,Escherichia coli ,MIG1 ,DNA, Fungal ,Promoter Regions, Genetic ,Molecular Biology ,Gene ,Glucans ,Derepression ,Trichoderma reesei ,Sequence Deletion ,Trichoderma ,Base Sequence ,creA/crel ,Fungal genetics ,biology.organism_classification ,Glucose ,chemistry ,Biochemistry ,Lac Operon ,Mutagenesis, Site-Directed - Abstract
Functional analysis of the cellulase promoter cbh1 of the filamentous fungus Trichoderma reesei was carried out using the Escherichia coli lacZ gene as a reporter. An assay based on cultivation on solid medium in microtiter plates was developed that allows rapid and reliable semiquantitative analysis of β-galactosidase expression of a large number of transformants. A series of deletions and specifically designed alterations were made covering 2.2kb of the cbh1 promoter. Removal of sequences upstream of nucleotide - 500 in relation to the initiator ATG abolished glucose repression. Mutation of a single hexanucleotide sequence 5'GTGGGG at nucleotide - 720 was sufficient for derepression. This site is similar to the binding sites of the glucose repressors MIG1 of Saccharomyces cerevisiae and CREA/CREI of filamentous fungi. Removal of the glucose repressor site did not affect sophorose induction. Sophorose induction of the promoter was retained even in deletion derivatives lacking sequences upstream of position - 161, which retained about 70 bp upstream of the transcription start point and only 30 bp upstream of the TATA box.
- Published
- 1996
- Full Text
- View/download PDF
12. Yeast protein translocation complex: isolation of two genes SEB1 and SEB2 encoding proteins homologous to the Sec61 beta subunit
- Author
-
J, Toikkanen, E, Gatti, K, Takei, M, Saloheimo, V M, Olkkonen, H, Söderlund, P, De Camilli, and S, Keränen
- Subjects
Cytoplasm ,DNA, Complementary ,Saccharomyces cerevisiae Proteins ,Base Sequence ,Sequence Homology, Amino Acid ,Genes, Fungal ,Molecular Sequence Data ,Vesicular Transport Proteins ,Membrane Proteins ,Membrane Transport Proteins ,Biological Transport ,Saccharomyces cerevisiae ,Sequence Analysis, DNA ,Endoplasmic Reticulum ,Cell Line ,Fungal Proteins ,Molecular Weight ,Dogs ,Microsomes ,Chlorocebus aethiops ,Animals ,Amino Acid Sequence ,Cloning, Molecular ,Genes, Suppressor ,SEC Translocation Channels - Abstract
A yeast gene (cDNA clone) was isolated in a screen for suppressors of secretion-defective sec15-1 mutation. This gene encodes a protein homologous to the beta subunit of the mammalian Sec61 protein complex functioning in protein translocation into the endoplasmic reticulum (ER). The predicted protein, Seb1p, consists of 82 amino acids and contains one potential membrane-spanning region at the C-terminus but no N-terminal signal sequence. Seb1p shows 30% identity to the mammalian Sec61 beta subunit and 34% identity to the Arabidopsis thaliana Sec61 beta subunit. Overexpression of SEB1 from a multicopy plasmid suppressed the temperature sensitivity of sec61-2 and sec61-3 mutants. Immunofluorescence and immunoelectron microscopy indicated that Seb1p resides in the ER membranes with the hydrophilic N-terminus exposed to the cytoplasm. The in vitro translated Seb1p was post-translationally inserted into microsomal membranes. As the chromosomal disruption of the SEB1 gene was not lethal, potential homologous genes were screened by heterologous hybridization. The SEB1 homologue thus isolated, SEB2, encodes a protein 53% identical to Seb1p. Disruption of the chromosomal SEB2 was not lethal whereas the double disruption of SEB1 and SEB2 resulted in a temperature-sensitive phenotype. This study further emphasizes the evolutionary conservation of the ER protein translocation apparatus and provides novel genetic tools for its functional analysis.
- Published
- 1996
13. Production of adrenergic receptors in yeast
- Author
-
D, Sizmann, H, Kuusinen, S, Keränen, J, Lomasney, M G, Caron, R J, Lefkowitz, and K, Keinänen
- Subjects
DNA, Complementary ,Receptors, Adrenergic, alpha-2 ,Fermentation ,Genetic Vectors ,Humans ,Receptors, Adrenergic, beta-2 ,Saccharomyces cerevisiae ,Phentolamine ,Protein Engineering ,Adrenergic alpha-Antagonists ,Receptors, Adrenergic - Abstract
Using a recombinant yeast strain expressing human beta 2 adrenergic receptors under a galactose-inducible promoter, we established conditions for receptor production in 1-15 liter fermenter culture. Crucial factors contributing to consistent high-level expression included the use of selective glucose-free medium, the maintenance of the pH of the culture at 7.2-7.5 and the presence of an antagonist. The expression strategy and production conditions used with the beta 2 adrenergic receptor were then employed to express the human alpha 2-C2 adrenergic receptor in Saccharomyces cerevisiae. Galactose-induced yeast cells displayed specific, high-affinity [3H]rauwolscine binding and contained a 50-kDa species recognized by an alpha 2-C2 receptor specific antiserum. In fermenter culture, up to 10(5) high-affinity [3H]rauwolscine binding sites per cell (corresponding to 30-60 pmol/mg of protein) were obtained. The high expression level combined with relative ease and low cost of scaling-up make yeast a promising alternative to mammalian cells for the production of adrenergic and other G-protein-coupled receptors for structural studies.
- Published
- 1996
14. Xylose-metabolizing Saccharomyces cerevisiae strains overexpressing the TKL1 and TAL1 genes encoding the pentose phosphate pathway enzymes transketolase and transaldolase
- Author
-
Bärbel Hahn-Hägerdal, S Keränen, Merja Penttilä, Mats Walfridsson, and Johan Hallborn
- Subjects
Saccharomyces cerevisiae ,Transketolase ,Biology ,Xylose ,Pentose phosphate pathway ,Xylitol ,Applied Microbiology and Biotechnology ,Gene Expression Regulation, Enzymologic ,Pentose Phosphate Pathway ,chemistry.chemical_compound ,Gene Expression Regulation, Fungal ,Pichia stipitis ,Ecology ,D-xylulose reductase ,food and beverages ,biology.organism_classification ,Transaldolase ,carbohydrates (lipids) ,Biochemistry ,chemistry ,Xylulokinase ,Research Article ,Food Science ,Biotechnology - Abstract
Saccharomyces cerevisiae was metabolically engineered for xylose utilization. The Pichia stipitis CBS 6054 genes XYL1 and XYL2 encoding xylose reductase and xylitol dehydrogenase were cloned into S. cerevisiae. The gene products catalyze the two initial steps in xylose utilization which S. cerevisiae lacks. In order to increase the flux through the pentose phosphate pathway, the S. cerevisiae TKL1 and TAL1 genes encoding transketolase and transaldolase were overexpressed. A XYL1- and XYL2-containing S. cerevisiae strain overexpressing TAL1 (S104-TAL) showed considerably enhanced growth on xylose compared with a strain containing only XYL1 and XYL2. Overexpression of only TKL1 did not influence growth. The results indicate that the transaldolase level in S. cerevisiae is insufficient for the efficient utilization of pentose phosphate pathway metabolites. Mixtures of xylose and glucose were simultaneously consumed with the recombinant strain S104-TAL. The rate of xylose consumption was higher in the presence of glucose. Xylose was used for growth and xylitol formation, but not for ethanol production. Decreased oxygenation resulted in impaired growth and increased xylitol formation. Fermentation with strain S103-TAL, having a xylose reductase/xylitol dehydrogenase ratio of 0.5:30 compared with 4.2:5.8 for S104-TAL, did not prevent xylitol formation.
- Published
- 1995
15. Production of functional IgM Fab fragments by Saccharomyces cerevisiae
- Author
-
J, Edqvist, S, Keränen, M, Penttilä, K B, Stråby, and J K, Knowles
- Subjects
Base Sequence ,Molecular Sequence Data ,DNA ,Immunoglobulin Fab Fragments ,Mice ,Saccharomyces ,Immunoglobulin M ,Escherichia coli ,Animals ,Immunoglobulin Light Chains ,Amino Acid Sequence ,Cloning, Molecular ,Immunoglobulin Heavy Chains ,Plasmids - Abstract
The aim of this study was to express and secrete functional mouse IgM fragments in yeast. The heavy chain cDNA was truncated at two different sites, yielding genes coding for the complete VH domain. In one of the truncated genes, the CH1 domain is complete, while in the other gene 18 bp are missing from the 3' terminus of the CH1 region. Both shortened genes were coexpressed in Saccharomyces cerevisiae with a cDNA gene encoding a full length mouse Ig light chain. We show that only the longer form of the truncated heavy chain together with the light chain produced and secreted functional IgM Fab fragments.
- Published
- 1991
16. A single amino acid change in E3 of ts1 mutant inhibits the intracellular transport of SFV envelope protein complex
- Author
-
P, Syväoja, J, Peränen, M, Suomalainen, S, Keränen, and L, Kääriäinen
- Subjects
Base Sequence ,Genetic Vectors ,Molecular Sequence Data ,Restriction Mapping ,Oligonucleotides ,Fluorescent Antibody Technique ,DNA ,Semliki forest virus ,Cell Compartmentation ,Structure-Activity Relationship ,Viral Envelope Proteins ,Mutation ,Cloning, Molecular ,Protein Processing, Post-Translational - Abstract
At 39 degrees the envelope protein complex (E1-p62) of Semliki Forest virus mutant ts1 is arrested in the rough endoplasmic reticulum (RER). When the infected cultures are shifted to 28 degrees, the complex is transported to the cell surface. During the transport p62 is cleaved into E2 under conditions in which no virus budding takes place. We have sequenced the cDNA, which encodes the envelope proteins of ts1. Comparison with the respective wild-type nucleotide sequence shows only one nucleotide change, G----A, causing a replacement of cysteine-58 (TGC) with tyrosine (TAC) in the E3 protein of ts1. A cDNA fragment from the ts1 genome encoding the mutation in E3 was used to replace the respective fragment of prototype SFV in an eukaryotic expression vector. Intracellular arrest of envelope proteins at 39 degrees was seen in transfected BHK21 cells. A shift of the transfected cells to 28 degrees resulted in the appearance of the envelope proteins at the cell surface. We conclude that the single point mutation is solely responsible for the temperature-sensitive transport defect of ts1 envelope glycoproteins.
- Published
- 1990
17. Nonstructural proteins of Semliki Forest virus: synthesis, processing, and stability in infected cells
- Author
-
L Ruohonen and S Keränen
- Subjects
medicine.medical_treatment ,Immunology ,Alphavirus ,Cleavage (embryo) ,Semliki Forest virus ,Microbiology ,Viral Proteins ,Eukaryotic translation ,Virology ,Protein biosynthesis ,medicine ,Amino Acid Sequence ,Polyacrylamide gel electrophoresis ,Peptide sequence ,Protease ,biology ,biology.organism_classification ,Semliki forest virus ,Molecular biology ,Molecular Weight ,Biochemistry ,Protein Biosynthesis ,Insect Science ,Electrophoresis, Polyacrylamide Gel ,Protein Processing, Post-Translational ,Research Article - Abstract
The synthesis of the nonstructural (ns) proteins of Semliki Forest virus was studied in vivo. The fourth ns protein, ns60, was identified and isolated. The order of translation (NH2-ns70-ns86-ns60-ns72-COOH) was determined by using various labeling procedures after or in the presence of a hypertonic block of translation initiation. A sequential labeling procedure was devised to specifically label defined segments of the polyprotein. The specific labeling procedures allowed isolation of the four ns proteins in radiochemically pure form by gradient polyacrylamide gel electrophoresis in the presence of sodium dodecyl sulfate. The four ns proteins were shown to have different primary structures by digestion with V8 protease of Staphylococcus aureus. The processing of the ns polyprotein and the stability of the mature ns proteins were studied by pulse-chase experiments. The cleavage of each of the proteins from the polyprotein took place within 2 to 3 min after the translation of the polypeptide chain. The N-terminal protein, ns70, appeared in its mature form later than ns86, which follows it in the polyprotein, suggesting that ns70 undergoes a post-translational modification. The migration of the C-terminal protein, ns72, immediately after a pulse was slightly faster than after a chase, suggesting that ns72 also undergoes a post-translational modification other than a cleavage. The half-life of ns72 was shorter than that of the other ns proteins.
- Published
- 1983
- Full Text
- View/download PDF
18. Tryptic peptide analysis on nonstructural and structural precursor proteins from Semliki Forest virus mutant-infected cells
- Author
-
B E Lachmi, N Glanville, L Lääriäinen, and S Keränen
- Subjects
viruses ,Immunology ,Mutant ,Semliki Forest virus ,medicine.disease_cause ,Microbiology ,Genome ,Viral Proteins ,Virology ,medicine ,Electrophoresis, Paper ,Trypsin ,Protein Precursors ,Mutation ,biology ,Molecular mass ,Temperature ,RNA ,biology.organism_classification ,Semliki forest virus ,Molecular biology ,Molecular Weight ,Biochemistry ,Capsid ,Insect Science ,Autoradiography ,Peptides ,Research Article ,medicine.drug - Abstract
Analysis of [35S]methionine-labeled tryptic peptides of the large proteins induced by temperature-sensitive mutants of Semliki Forest virus was carried out. The 130,000-molecular-weight protein induced by ts-2 and ts-3 mutants contained the peptides of capsid protein and of both major envelope proteins E1 and E2. The ts-3-induced protein with molecular weight of 97,000 contained peptides of the capsid and envelope protein E2 but not those of E1. Two proteins with molecular weights of 78,000 and 86,000 from ts-1-infected cells did not contain the peptides of the virion structural proteins. They are evidently expressions of the nonstructural part of the 42S RNA genome of Semliki Forest virus.
- Published
- 1975
- Full Text
- View/download PDF
19. Functional defects of RNA-negative temperature-sensitive mutants of Sindbis and Semliki Forest viruses
- Author
-
L Kääriäinen and S Keränen
- Subjects
Sindbis virus ,viruses ,Immunology ,RNA-dependent RNA polymerase ,Biology ,Semliki Forest virus ,Microbiology ,Viral Proteins ,Virology ,Protein biosynthesis ,Polymerase ,Subgenomic mRNA ,Temperature ,RNA ,DNA-Directed RNA Polymerases ,biology.organism_classification ,Molecular biology ,Semliki forest virus ,Complementation ,Molecular Weight ,Insect Science ,Mutation ,biology.protein ,RNA, Viral ,Sindbis Virus ,Research Article - Abstract
Defects in RNA and protein synthesis of seven Sindbis virus and seven Semliki Forest virus RNA-negative, temperature-sensitive mutants were studied after shift to the restrictive temperature (39 degrees C) in the middle of the growth cycle. Only one of the mutants, Ts-6 of Sindbis virus, a representative of complementation group F, was clearly unable to continue RNA synthesis at 39 degrees C, apparently due to temperature-sensitive polymerase. The defect was reversible and affected the synthesis of both 42S and 26S RNA equally, suggesting that the same polymerase component(s) is required for the synthesis of both RNA species. One of the three Sindbis virus mutants of complementation group A, Ts-4, and one RNA +/- mutant of Semliki Forest virus, ts-10, showed a polymerase defect even at the permissive temperature. Seven of the 14 RNA-negative mutants showed a preferential reduction in 26S RNA synthesis. The 26S RNA-defective mutants of Sindbis virus were from two different complementation groups, A and G, indicating that functions of two viral nonstructural proteins ("A" and "G") are required in the regulation of the synthesis of 26S RNA. Since the synthesis of 42S RNA continued, these functions of proteins A and G are not needed for the polymerization of RNA late in infection. The RNA-negative phenotype of 26S RNA-deficient mutants implies that proteins regulating the synthesis of this subgenomic RNA must have another function vital for RNA synthesis early in infection or in the assembly of functional polymerase. Several of the mutants having a specific defect in the synthesis of 26S RNA showed an accumulation of a large nonstructural precursor protein with a molecular weight of about 200,000. One even larger protein was demonstrated in both Semliki Forest virus- and Sindbis virus-infected cells which probably represents the entire nonstructural polyprotein.
- Published
- 1979
20. Replication of Semliki Forest virus
- Author
-
L, Kääriäinen, S, Keränen, B, Lachmi, H, Söderlund, K, Tuomi, and I, Ulmanen
- Subjects
Molecular Weight ,Viral Proteins ,Capsid ,Cricetinae ,Temperature ,Animals ,RNA, Viral ,DNA-Directed RNA Polymerases ,Kidney ,Virus Replication ,Semliki forest virus ,Cell Line - Abstract
Replication of Semliki Forest virus, a typical alphavirus, takes place in the cytoplasm of many eukaryotic cells. The virus genome, the 42 S RNA, directs the synthesis of at least two RNA-dependent RNA polymerases. By the aid of these enzymes complementary 45 S RNA is synthesized; it serves as a template for the synthesis of positive RNA strands with sedimentation values of 45 S and 26 S. In BHK cells close to 200,000 molecules of each RNA species are produced per cell. Both 26 S and 42 S RNAs are associated with polysomes synthesizing viral structural proteins. The 26 S RNA is a duplication of the nucleotide sequences coding for the virion proteins. These are translated as a polyprotein with the capsid protein at the N-terminal end followed by the envelope proteins E2 and E1. Usually only small amounts of nonstructural proteins are synthesized at the exponential phase of virus growth, indicating that a translational control operates in Semliki Forest virus-infected cells. One of our temperature-sensitive mutants, ts-1, directs, however, the synthesis of two nonstructural proteins with MWs of 78,000 and 86,000 when grown at the nonpermissive temperature. The assembly of the viral nucleocapsid begins by association of the capsid protein with the 42 S RNA, which is still serving as a messenger. In this process a cytoplasmic structure sedimenting at about 65 S is presumably one of the capsid protein donors. The 140 S nucleocapsid buds through the host cell plasma membrane whereby the capsid protein interacts with the envelope proteins creating a specific viral envelope devoid of host proteins. Altogether 5,000 to 20,000 virus particles are released from each cell by the end of the growth cycle, representing about 10% of the 42 S RNA molecules synthesized during the infection.
- Published
- 1975
21. Membrane fusion mutants of Semliki Forest virus
- Author
-
Ari Helenius, Margaret Kielian, L Kääriäinen, and S Keränen
- Subjects
Cell-Free System ,Endosome ,viruses ,Mutant ,Endocytic cycle ,Lipid bilayer fusion ,Cell Biology ,Vacuole ,Intracellular Membranes ,Articles ,Biology ,Hydrogen-Ion Concentration ,Endocytosis ,Semliki Forest virus ,biology.organism_classification ,Membrane Fusion ,Semliki forest virus ,Cell biology ,Cell membrane ,medicine.anatomical_structure ,Mutation ,medicine ,Lysosomes - Abstract
Previous reports have indicated that the entry of Semliki Forest virus (SFV) into cells depends on a membrane fusion reaction catalyzed by the viral spike glycoproteins and triggered by the low pH prevailing in the endosomal compartment. In this study the in vitro pH-dependent fusion of SFV with nuclease-filled liposomes has been used to select for a new class of virus mutants that have a pH-conditional defect. The mutants obtained had a threshold for fusion of pH 5.5 as compared with the wild-type threshold of 6.2, when assayed by polykaryon formation, fusion with liposomes, or fusion at the plasma membrane. They were fully capable of infecting cells under standard infection conditions but were more sensitive to lysosomotropic agents that increase the pH in acidic vacuoles of the endocytic pathway. The mutants were, moreover, able to penetrate and infect baby hamster kidney-21 cells at 20 degrees C, indicating that the endosomes have a pH below 5.5. The results confirm the involvement of pH-triggered fusion in SFV entry, emphasize the central role played by acidic endosomal vacuoles in this reaction, shed further light on the mechanism of SFV inhibition by lysosomotropic weak bases, and demonstrate the usefulness of mutant viruses as biological pH probes of the endocytic pathway.
- Published
- 1984
22. Efficient secretion of Bacillus amyloliquefaciens alpha-amylase by [corrected] its own signal peptide from Saccharomyces cerevisiae host cells [corrected]
- Author
-
L, Ruohonen, P, Hackman, P, Lehtovaara, J K, Knowles, and S, Keränen
- Subjects
Base Sequence ,Genes ,Genes, Bacterial ,Molecular Sequence Data ,Bacillus ,Amino Acid Sequence ,DNA Restriction Enzymes ,Saccharomyces cerevisiae ,Protein Sorting Signals ,alpha-Amylases ,Promoter Regions, Genetic ,Recombinant Proteins ,Plasmids - Abstract
The expression and secretion of Bacillus amyloliquefaciens alpha-amylase was studied in yeast Saccharomyces cerevisiae. The Bacillus promoter was removed by BAL 31 digestion and three forms of the alpha-amylase gene were constructed: the Bacillus signal sequence was either complete (YEp alpha a1), partial (YEp alpha a2) or missing (YEp alpha a3). Secretion of alpha-amylase into the culture medium was obtained with the complete signal sequence only. The secreted alpha-amylase was glycosylated and its signal peptide was apparently processed. The glycosylated alpha-amylase remained active. The enzyme produced by the other constructions was not glycosylated and thus probably remained in the cytoplasm.
- Published
- 1987
23. Transport of virus membrane glycoproteins, use of temperature-sensitive mutants and organelle-specific lectins
- Author
-
L, Kääriäinen, I, Virtanen, J, Saraste, and S, Keränen
- Subjects
Temperature ,Fluorescent Antibody Technique ,Membrane Proteins ,Biological Transport ,Chick Embryo ,Fibroblasts ,Cell Transformation, Viral ,Semliki forest virus ,Viral Proteins ,Lectins ,Mutation ,Animals ,Indicators and Reagents ,Cells, Cultured - Published
- 1983
24. Proteins synthesized by Semliki Forest virus and its 16 temperature-sensitive mutants
- Author
-
S Keränen and L Kääriäinen
- Subjects
Immunology ,Mutant ,Chick Embryo ,Semliki Forest virus ,Sulfur Radioisotopes ,Tritium ,Microbiology ,Cell Line ,Viral Proteins ,Methionine ,immune system diseases ,Virology ,Virus maturation ,Protein biosynthesis ,Animals ,Trypsin ,Amino Acids ,Protein Precursors ,Polyacrylamide gel electrophoresis ,chemistry.chemical_classification ,biology ,Temperature ,RNA ,virus diseases ,Fibroblasts ,biology.organism_classification ,Molecular biology ,Semliki forest virus ,Amino acid ,Molecular Weight ,Biochemistry ,Capsid ,chemistry ,Insect Science ,Protein Biosynthesis ,Mutation ,Electrophoresis, Polyacrylamide Gel ,Peptides ,Research Article - Abstract
The proteins synthesized in chicken embryo fibroblasts infected with wild-type Semliki Forest virus and 16 temperature-sensitive mutants derived from it were studied by polyacrylamide gel electrophoresis. In addition to the structural proteins, five nonvirion proteins (NVP) with molecular weight of 130,000, 97,000, 86,000, 78,000 and 62,000 were found varying amounts in cells infected with the different RNA+ mutants and also in the wild-type-infected cells. Pulse-chase experiments suggested that NVP 130, NVP 97, NVP 86, and NVP 62 are precursors presumably of the structural proteins. The amount of NVP 78 was not affected by the chase, and it may represent a translational product of the nonstructural part of the genome. The NVP 130 was shown to be a common precursor of the structural proteins by tryptic peptide mapping. Kinetic evidence from one of the mutants (ts-3) suggested that NVP 86 is one of the precursors of the capsid protein. A common feature of all the RNA+mutants was the inability to cleave the NVP 62 into E2 and E3, suggesting that this cleavage is a crucial reaction in the virus maturation.
- Published
- 1975
25. Synthesis and processing of Semliki forest virus polyprotein in Saccharomyces cerevisiae: a yeast type glycosylation of E1 envelope protein
- Author
-
S, Keränen
- Subjects
Viral Proteins ,Capsid ,Viral Envelope Proteins ,Recombinant Fusion Proteins ,Golgi Apparatus ,Membrane Proteins ,Saccharomyces cerevisiae ,Protein Processing, Post-Translational ,Semliki forest virus ,Glycoproteins - Abstract
A cDNA coding for the structural proteins of Semliki Forest virus (SFV) was ligated between the ADC1 promoter and terminator in a yeast expression vector, pAAH5. Synthesis of the SFV-specific proteins in Saccharomyces cerevisiae transformed with this vector was shown by immunoblotting and immunoprecipitation. Detection of the N-terminal and the C-terminal components of the viral polyprotein, capsid protein and E1 envelope protein, respectively, suggested that the entire polyprotein was translated in yeast. The capsid protein was effectively released from the polyprotein as a normal size polypeptide, but the following protein, p62 (E3, E2 precursor) was not detected, suggesting that it was rapidly degraded. Electrophoretic analyses indicated that the final protein, E1, entered the secretory pathway, the signal sequence was cleaved off and the protein became extensively and heterogeneously glycosylated. These data suggest that E1 was transported to the Golgi complex and that yeast-characteristic outer-chain glycans were added to the protein.
- Published
- 1986
26. Demonstration of mink virus enteritis antibodies by complement-fixation test
- Author
-
J, Kangas, L, Kääriäinen, and S, Keränen
- Subjects
Feline Panleukopenia ,Mink ,Immune Sera ,Complement Fixation Tests ,Vaccination ,Cats ,Methods ,Animals ,Female ,Antibodies, Viral ,Antibodies - Published
- 1972
27. Yeast syntaxins Sso1p and Sso2p belong to a family of related membrane proteins that function in vesicular transport
- Author
-
S. Keränen, M.K. Aalto, and Hans Ronne
- Subjects
Munc18 Proteins ,Saccharomyces cerevisiae Proteins ,Protein family ,Genes, Fungal ,Molecular Sequence Data ,Vesicular Transport Proteins ,Syntaxin 1 ,Nerve Tissue Proteins ,Saccharomyces cerevisiae ,Biology ,Models, Biological ,General Biochemistry, Genetics and Molecular Biology ,Fungal Proteins ,symbols.namesake ,GTP-Binding Proteins ,Syntaxin ,Amino Acid Sequence ,Cloning, Molecular ,Genes, Suppressor ,Molecular Biology ,Base Sequence ,Models, Genetic ,Sequence Homology, Amino Acid ,General Immunology and Microbiology ,Qa-SNARE Proteins ,General Neuroscience ,Membrane Proteins ,Biological Transport ,Intracellular Membranes ,Golgi apparatus ,Biological Evolution ,Cell Compartmentation ,Vesicular transport protein ,Biochemistry ,Membrane protein ,Multigene Family ,Antigens, Surface ,symbols ,Research Article - Abstract
The yeast SEC1 gene encodes a hydrophilic protein that functions at the terminal stage in secretion. We have cloned two yeast genes, SSO1 and SSO2, which in high copy number can suppress sec1 mutations and also mutations in several other late acting SEC genes, such as SEC3, SEC5, SEC9 and SEC15. SSO1 and SSO2 encode small proteins with N‐terminal hydrophilic domains and C‐terminal hydrophobic tails. The two proteins are 72% identical in sequence and together perform an essential function late in secretion. Sso1p and Sso2p show significant sequence similarity to six other proteins. Two of these, Sed5p and Pep12p, are yeast proteins that function in transport from ER to Golgi and from Golgi to the vacuole, respectively. Also related to Sso1p and Sso2p are three mammalian proteins: epimorphin, syntaxin A/HPC‐1 and syntaxin B. A nematode cDNA product also belongs to the new protein family. The new protein family is thus present in a wide variety of eukaryotic cells, where its members function at different stages in vesicular transport.
- Full Text
- View/download PDF
28. CNS-associated macrophages contribute to intracerebral aneurysm pathophysiology.
- Author
-
Glavan M, Jelic A, Levard D, Frösen J, Keränen S, Franx BAA, Bras AR, Louet ER, Dénes Á, Merlini M, Vivien D, and Rubio M
- Subjects
- Mice, Animals, Humans, Inflammation pathology, Central Nervous System metabolism, Risk Factors, Macrophages metabolism, Intracranial Aneurysm etiology, Intracranial Aneurysm metabolism, Intracranial Aneurysm pathology, Aneurysm, Ruptured complications, Aneurysm, Ruptured metabolism, Aneurysm, Ruptured pathology
- Abstract
Intracerebral aneurysms (IAs) are pathological dilatations of cerebral arteries whose rupture leads to subarachnoid hemorrhage, a significant cause of disability and death. Inflammation is recognized as a critical contributor to the formation, growth, and rupture of IAs; however, its precise actors have not yet been fully elucidated. Here, we report CNS-associated macrophages (CAMs), also known as border-associated macrophages, as one of the key players in IA pathogenesis, acting as critical mediators of inflammatory processes related to IA ruptures. Using a new mouse model of middle cerebral artery (MCA) aneurysms we show that CAMs accumulate in the IA walls. This finding was confirmed in a human MCA aneurysm obtained after surgical clipping, together with other pathological characteristics found in the experimental model including morphological changes and inflammatory cell infiltration. In addition, in vivo longitudinal molecular MRI studies revealed vascular inflammation strongly associated with the aneurysm area, i.e., high expression of VCAM-1 and P-selectin adhesion molecules, which precedes and predicts the bleeding extent in the case of IA rupture. Specific CAM depletion by intracerebroventricular injection of clodronate liposomes prior to IA induction reduced IA formation and rupture rate. Moreover, the absence of CAMs ameliorated the outcome severity of IA ruptures resulting in smaller hemorrhages, accompanied by reduced neutrophil infiltration. Our data shed light on the unexplored role of CAMs as main actors orchestrating the progression of IAs towards a rupture-prone state., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
29. ErbB signaling is a potential therapeutic target for vascular lesions with fibrous component.
- Author
-
Jauhiainen S, Ilmonen H, Vuola P, Rasinkangas H, Pulkkinen HH, Keränen S, Kiema M, Liikkanen JJ, Laham-Karam N, Laidinen S, Beter M, Aavik E, Lappalainen K, Lohi J, Aronniemi J, Örd T, Kaikkonen MU, Salminen P, Tukiainen E, Ylä-Herttuala S, and Laakkonen JP
- Subjects
- Humans, Mice, Animals, Vascular Endothelial Growth Factor A metabolism, Signal Transduction, Protein Kinase Inhibitors pharmacology, Class I Phosphatidylinositol 3-Kinases metabolism, Endothelial Cells metabolism, Vascular Malformations drug therapy, Vascular Malformations genetics, Vascular Malformations pathology
- Abstract
Background: Sporadic venous malformation (VM) and angiomatosis of soft tissue (AST) are benign, congenital vascular anomalies affecting venous vasculature. Depending on the size and location of the lesion, symptoms vary from motility disturbances to pain and disfigurement. Due to the high recurrence of the lesions, more effective therapies are needed., Methods: As targeting stromal cells has been an emerging concept in anti-angiogenic therapies, here, by using VM/AST patient samples, RNA-sequencing, cell culture techniques, and a xenograft mouse model, we investigated the crosstalk of endothelial cells (EC) and fibroblasts and its effect on vascular lesion growth., Results: We report, for the first time, the expression and secretion of transforming growth factor A (TGFA) in ECs or intervascular stromal cells in AST and VM lesions. TGFA induced secretion of vascular endothelial growth factor (VEGF-A) in paracrine fashion, and regulated EC proliferation. Oncogenic PIK3CA variant in p.H1047R, a common somatic mutation found in these lesions, increased TGFA expression, enrichment of hallmark hypoxia, and in a mouse xenograft model, lesion size, and vascularization. Treatment with afatinib, a pan-ErbB tyrosine-kinase inhibitor, decreased vascularization and lesion size in a mouse xenograft model with ECs expressing oncogenic PIK3CA p.H1047R variant and fibroblasts., Conclusions: Based on the data, we suggest that targeting of both intervascular stromal cells and ECs is a potential treatment strategy for vascular lesions having a fibrous component., Funding: Academy of Finland, Ella and Georg Ehnrooth foundation, the ERC grants, Sigrid Jusélius Foundation, Finnish Foundation for Cardiovascular Research, Jane and Aatos Erkko Foundation, GeneCellNano Flagship program, and Department of Musculoskeletal and Plastic Surgery, Helsinki University Hospital., Competing Interests: SJ, HI, PV, HR, HP, SK, MK, JL, NL, SL, MB, EA, KL, JL, JA, TÖ, MK, PS, ET, SY, JL No competing interests declared, (© 2023, Jauhiainen, Ilmonen et al.)
- Published
- 2023
- Full Text
- View/download PDF
30. Cyclo-oxygenase 2, a putative mediator of vessel remodeling, is expressed in the brain AVM vessels and associates with inflammation.
- Author
-
Keränen S, Suutarinen S, Mallick R, Laakkonen JP, Guo D, Pawlikowska L, Jahromi BR, Rauramaa T, Ylä-Herttuala S, Marchuk D, Krings T, Koivisto T, Lawton M, Radovanovic I, Kim H, Faughnan ME, and Frösen J
- Subjects
- Brain pathology, Humans, Inflammation, Brain metabolism, Cyclooxygenase 2 genetics, Intracranial Arteriovenous Malformations metabolism, Vascular Remodeling
- Abstract
Background: Brain arteriovenous malformations (bAVM) may rupture causing disability or death. BAVM vessels are characterized by abnormally high flow that in general triggers expansive vessel remodeling mediated by cyclo-oxygenase-2 (COX2), the target of non-steroidal anti-inflammatory drugs. We investigated whether COX2 is expressed in bAVMs and whether it associates with inflammation and haemorrhage in these lesions., Methods: Tissue was obtained from surgery of 139 bAVMs and 21 normal Circle of Willis samples. The samples were studied with immunohistochemistry and real-time quantitative polymerase chain reaction (RT-PCR). Clinical data was collected from patient records., Results: COX2 expression was found in 78% (109/139) of the bAVMs and localized to the vessels' lumen or medial layer in 70% (95/135) of the bAVMs. Receptors for prostaglandin E2, a COX2-derived mediator of vascular remodeling, were found in the endothelial and smooth muscle cells and perivascular inflammatory cells of bAVMs. COX2 was expressed by infiltrating inflammatory cells and correlated with the extent of inflammation (r = .231, p = .007, Spearman rank correlation). COX2 expression did not associate with haemorrhage., Conclusion: COX2 is induced in bAVMs, and possibly participates in the regulation of vessel wall remodelling and ongoing inflammation. Role of COX2 signalling in the pathobiology and clinical course of bAVMs merits further studies., (© 2021. The Author(s).)
- Published
- 2021
- Full Text
- View/download PDF
31. Systemic immune response against the oral pathogens Porphyromonas gingivalis and Aggregatibacter actinomycetemcomitans is associated with the formation and rupture of intracranial aneurysms.
- Author
-
Hallikainen J, Pyysalo M, Keränen S, Kellokoski J, Koivisto T, Suominen AL, Pussinen P, Pessi T, and Frösen J
- Subjects
- Antibodies, Bacterial, Cross-Sectional Studies, Humans, Immunity, Porphyromonas gingivalis, Aggregatibacter actinomycetemcomitans, Intracranial Aneurysm
- Abstract
Background and Purpose: Periodontal infections are associated with the formation and rupture of intracranial aneurysms (IAs). This study investigated the role of two key periodontal pathogens, Porphyromonas gingivalis and Aggregatibacter actinomycetemcomitans., Methods: Immunoglobulin A (IgA) and IgG antibodies against P. gingivalis and A. actinomycetemcomitans were measured with enzyme immune assay from the serum of 227 IA patients, of whom 64 also underwent clinical oral examination. As a control group, 1096 participants in a cross-sectional health survey, Health 2000, underwent serological studies and oral examination. Logistic regression was used for multivariate analysis. Immunohistochemistry was performed to demonstrate bacteria-derived epitopes in the IA wall., Results: Widespread gingivitis and severe periodontitis were more common in IA patients than in controls (2× and 1.5×, respectively). IgA antibodies against P. gingivalis and A. actinomycetemcomitans were 1.5× and 3-3.4× higher, respectively, in both unruptured and ruptured IA patients compared to controls (p ≤ 0.003). IgG antibodies against P. gingivalis were 1.8× lower in unruptured IA patients (p < 0.001). In multivariate analysis, high IgA, but low IgG, antibody levels against P. gingivalis (odds ratio [OR] = 1.4, 95% confidence interval [Cl] = 1.1-1.8 and OR = 1.5, 95% Cl = 1.1-1.9; OR = 0.6, 95% Cl = 0.4-0.7 and OR = 0.5, 95% Cl = 0.4-0.7) and against A. actinomycetemcomitans (OR = 2.3, 95% Cl = 1.7-3.1 and OR = 2.1, 95% Cl = 1.5-2.9; OR = 0.6, 95% Cl = 0.4-0.8 and OR = 0.6, 95% Cl = 0.5-0.9) were associated with the risk of IA formation and rupture. Immunohistochemistry showed P. gingivalis epitopes in the IA wall., Conclusions: Exposure to the periodontal pathogens P. gingivalis and A. actinomycetemcomitans and dysfunctional acquired immune response against them may increase the risk of IA formation and IA rupture., (© 2021 The Authors. European Journal of Neurology published by John Wiley & Sons Ltd on behalf of European Academy of Neurology.)
- Published
- 2021
- Full Text
- View/download PDF
32. Role of oral pathogens in the pathogenesis of intracranial aneurysm: review of existing evidence and potential mechanisms.
- Author
-
Hallikainen J, Keränen S, Savolainen J, Närhi M, Suominen AL, Ylöstalo P, Kellokoski J, Pyysalo M, Pussinen P, Rauramaa T, and Frösen J
- Subjects
- Aneurysm, Ruptured etiology, Aneurysm, Ruptured microbiology, Humans, Subarachnoid Hemorrhage etiology, Subarachnoid Hemorrhage microbiology, Intracranial Aneurysm etiology, Intracranial Aneurysm microbiology, Mouth microbiology, Periodontal Diseases complications, Periodontal Diseases microbiology
- Abstract
Degeneration of intracranial aneurysm wall is under active research and recent studies indicate an increased risk of rupture of intracranial aneurysm among patients with periodontal diseases. In addition, oral bacterial DNA has been identified from wall samples of ruptured and unruptured aneurysms. These novel findings led us to evaluate if oral diseases could predispose to pathological changes seen on intracranial aneurysm walls eventually leading to subarachnoid hemorrhage. The aim of this review is to consider mechanisms on the relationship between periodontitis and aneurysm rupture, focusing on recent evidence.
- Published
- 2021
- Full Text
- View/download PDF
33. Histopathology of brain AVMs part I: microhemorrhages and changes in the nidal vessels.
- Author
-
Järvelin P, Wright R, Pekonen H, Keränen S, Rauramaa T, and Frösen J
- Subjects
- Adult, Brain blood supply, Brain pathology, Female, Hemorrhage pathology, Humans, Intracranial Arteriovenous Malformations complications, Intracranial Arteriovenous Malformations surgery, Male, Blood Vessels pathology, Hemorrhage etiology, Intracranial Arteriovenous Malformations pathology
- Abstract
Background: Arteriovenous malformations of the brain (bAVM) may rupture from aneurysms or ectasias of the feeding, draining, or nidal vessels. Moreover, they may rupture from the immature, fragile nidal vessels that are characteristic to bAVMs. How the histopathological changes of the nidal vessels associate with clinical presentation and hemorrhage of the lesion is not well known., Materials and Methods: We investigated tissue samples from surgically treated bAVMs (n = 85) using standard histological and immunohistochemical stainings. Histological features were compared with the clinical presentation of the patient., Results: Microhemorrhages from nidal vessels were found both in bAVMs with a history of clinically evident rupture and in bAVMs considered unruptured. These microhemorrhages were associated with presence of immature, pathological nidal vessels (p = 0.010) and perivascular inflammation of these vessels (p = 0.001), especially with adhesion of neutrophils (p < 0.001). In multivariate analysis, perivascular inflammation (OR = 19, 95% CI 1.6 to 230), neutrophil infiltration of the vessel wall (OR = 13, 95% CI 1.9 to 94), and rupture status (OR = 0.13, 95% CI 0.017 to 0.92) were significantly associated with microhemorrhages., Conclusions: Clinically silent microhemorrhages from nidal vessels seem to be very common in bAVMs, and associate with perivascular inflammation and neutrophil infiltration. Further studies on the role of perivascular inflammation in the clinical course of bAVMs are indicated.
- Published
- 2020
- Full Text
- View/download PDF
34. Histopathology of brain AVMs part II: inflammation in arteriovenous malformation of the brain.
- Author
-
Wright R, Järvelin P, Pekonen H, Keränen S, Rauramaa T, and Frösen J
- Subjects
- Adult, Blood Vessels pathology, Brain blood supply, Brain pathology, Female, Humans, Inflammation, Male, Intracranial Arteriovenous Malformations pathology
- Abstract
Background: Hemorrhage from an arteriovenous malformation of the brain (bAVM) has been associated with focal inflammation of the bAVM. Intrigued by the possibility of anti-inflammatory drug therapy to stabilize bAVMs and prevent hemorrhage, we investigated the association of bAVM inflammation with other histological features and clinical presentation., Materials and Methods: Tissue samples from 85 surgically treated bAVMs were studied with histology and CD45 immunostainings. The histological data was compared with the clinical history of the patient. Univariate analysis and logistic regression were performed., Results: Inflammation was found in all studied bAVMs and did not associate with rupture (p = 0.442). While multiple types of inflammatory cells were present, macrophages were clearly the dominant inflammatory cell type, especially in samples with strong inflammation (87% of the samples). Of those bAVMs that had strong inflammation, only 56% had presented with clinically evident rupture. However, hemosiderin which is a sign of prior hemorrhage was detected in 78.4% (58/74) of samples with strong inflammation and was associated with it (p = 0.003). Inflammation in the nidus and parenchyma was associated with perivascular inflammation (p < 0.001). Multivariate analysis did not reveal any independent histological or clinical risk factor for inflammation., Conclusions: Since strong inflammation is present in both unruptured and ruptured bAVMs, it is not just a reaction to rupture. Our observations suggest that inflammation of the bAVM may indeed predispose to fragility and hemorrhage of the nidal vessels. Further studies in the role of inflammation in the untreated clinical course of bAVMs are indicated.
- Published
- 2020
- Full Text
- View/download PDF
35. The freezing method of cleavage stage embryos has no impact on the weight of the newborns.
- Author
-
Kaartinen N, Kananen K, Huhtala H, Keränen S, and Tinkanen H
- Subjects
- Adult, Birth Rate, Blastocyst cytology, Cohort Studies, Female, Fertilization in Vitro methods, Humans, Infant, Newborn, Male, Pregnancy, Pregnancy Rate, Retrospective Studies, Vitrification, Birth Weight physiology, Blastocyst physiology, Cryopreservation methods, Embryo Transfer methods
- Abstract
Purpose: The aim of this study was to study the effect of the embryo freezing method on the birth weight of newborns from frozen embryo transfer (FET) cycles, and the pregnancy results of cleavage stage embryos cryopreserved by slow freezing or vitrification., Methods: This is a retrospective cohort study undertaken in a University Hospital IVF unit using concurrently both the slow-freezing and the vitrification techniques. All frozen-thawed and vitrified-warmed day 2 and day 3 embryo transfers during the time period from 1 April 2009 to 31 November 2013 were included in the study., Results: There was no statistically significant weight difference between newborns from vitrified or slow-frozen embryos (3588 vs 3670 g). A higher post-thaw viability rate was achieved after cryopreservation by the vitrification technique compared to the slow-freezing protocol (83.4 vs 61.4%). The miscarriage rate was lower in the vitrification group (15.7 vs 29.0%). The live birth rates were similar (19.5 vs 19.1%) in the slow-freezing and vitrification groups, respectively. Among vitrified embryos, 7.4 embryos needed to be thawed to produce one delivery; in the slow-freezing group, that number was 11.9., Conclusions: The freezing method has no impact on the weight of the newborn. With lower post-thaw survival rates and higher miscarriage rates, the slow-freezing cryopreservation protocol is inferior to the vitrification technique.
- Published
- 2016
- Full Text
- View/download PDF
36. Northern excess in adolescent male firearm suicides: a register-based regional study from Finland, 1972-2009.
- Author
-
Lahti A, Keränen S, Hakko H, Riala K, and Räsänen P
- Subjects
- Adolescent, Finland, Humans, Male, Suicide statistics & numerical data, Young Adult, Firearms statistics & numerical data, Rural Population statistics & numerical data, Urban Population statistics & numerical data
- Abstract
There are more firearms in Northern Finland as compared to Southern Finland, and a positive association between suicide rates and the number of firearms in a given region has been demonstrated in previous literature. Accordingly, the authors compared firearm suicide rates of Finnish adolescent (under 18 years) males in the two geographic regions. Young adult (18-24 years) and adult (25-44 years) males were used as reference groups. National data on cases of suicide in Northern and Southern Finland between 1972 and 2009 were obtained from Statistics Finland. Firearm suicides (n=5,423) were extracted according to ICD-classification (ICD-8/9: E955, ICD-10: X72-X75). The distribution of types of firearms (hunting gun, handgun, other) employed in suicides was also investigated. The adolescent male firearm suicide rate in Northern Finland was almost three times higher than that observed in Southern Finland, while there was no difference in rates of suicide by other methods. A northern excess in firearm suicide rates was also found among young adult and adult males. Hunting guns were the most common type of firearms employed in young male suicides, and their use was especially common in Northern Finland. Our results indicate that the use of firearms plays a major role in explaining the northern excess in young Finnish male suicide rates, and emphasize a need to advance suicide prevention according to specific regional characteristics.
- Published
- 2014
- Full Text
- View/download PDF
37. Youth suicide trends in Finland, 1969-2008.
- Author
-
Lahti A, Räsänen P, Riala K, Keränen S, and Hakko H
- Subjects
- Adolescent, Age Factors, Chi-Square Distribution, Female, Finland epidemiology, Humans, Male, Regression Analysis, Sex Factors, Suicide statistics & numerical data, Young Adult, Suicide trends
- Abstract
Background: There are only a few recent studies on secular trends in child and adolescent suicides. We examine here trends in rates and methods of suicide among young people in Finland, where suicide rates at these ages are among the highest in the world., Methods: The data, obtained from Statistics Finland, consisted of all suicides (n = 901) committed by persons under 18 years of age over the period 1969-2008. Gender-specific trends were analysed separately for the years 1969-1989 and 1990-2008 using 3-year moving averages. Trends in methods of suicide were examined from 1975 to 2008 in five-year periods., Results: The male-to-female ratio in youth suicides was 3.6:1. The male rates increased in 1969-1989, while the rates among females were inconsistent. After 1990, the rates decreased for males but turned to an increase among females. Shooting was the most common suicide method among males throughout the period, while hanging exceeded poisoning as the most common method among females after 1990. All violent suicides decreased for males and increased for females in 1990-2008., Conclusions: The increase in violent, i.e., more lethal, suicide methods among young females is alarming, as females are known to have higher rates of attempted suicide than males. Alcohol consumption, rates and treatment of depression and violent behaviour among adolescents are discussed as approaches towards explaining this phenomenon., (© 2011 The Authors. Journal of Child Psychology and Psychiatry © 2011 Association for Child and Adolescent Mental Health.)
- Published
- 2011
- Full Text
- View/download PDF
38. The transmembrane domain is sufficient for Sbh1p function, its association with the Sec61 complex, and interaction with Rtn1p.
- Author
-
Feng D, Zhao X, Soromani C, Toikkanen J, Römisch K, Vembar SS, Brodsky JL, Keränen S, and Jäntti J
- Subjects
- Cytosol metabolism, Endoplasmic Reticulum genetics, Gene Deletion, Mating Factor, Membrane Proteins genetics, Membrane Transport Proteins, Multiprotein Complexes genetics, Peptides genetics, Peptides metabolism, Protein Structure, Tertiary physiology, Protein Subunits genetics, Protein Subunits metabolism, Protein Transport physiology, SEC Translocation Channels, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins genetics, Vesicular Transport Proteins, Endoplasmic Reticulum metabolism, Membrane Proteins metabolism, Multiprotein Complexes metabolism, Saccharomyces cerevisiae metabolism, Saccharomyces cerevisiae Proteins metabolism
- Abstract
The Sec61 protein translocation complex in the endoplasmic reticulum (ER) membrane is composed of three subunits. The alpha-subunit, called Sec61p in yeast, is a multispanning membrane protein that forms the protein conducting channel. The functions of the smaller, carboxyl-terminally tail-anchored beta subunit Sbh1p, its close homologue Sbh2p, and the gamma subunit Sss1p are not well understood. Here we show that co-translational protein translocation into the ER is reduced in sbh1Delta sbh2Delta cells, whereas there is a limited reduction of post-translational translocation and no effect on export of a mutant form of alpha-factor precursor for ER-associated degradation in the cytosol. The translocation defect and the temperature-sensitive growth phenotype of sbh1Delta sbh2Delta cells were rescued by expression of the transmembrane domain of Sbh1p alone, and the Sbh1p transmembrane domain was sufficient for coimmunoprecipitation with Sec61p and Sss1p. Furthermore, we show that Sbh1p co-precipitates with the ER transmembrane protein Rtn1p. Sbh1p-Rtn1p complexes do not appear to contain Sss1p and Sec61p. Our results define the transmembrane domain as the minimal functional domain of the Sec61beta homologue Sbh1p in ER translocation, identify a novel interaction partner for Shb1p, and imply that Sbh1p has additional functions that are not directly linked to protein translocation in association with the Sec61 complex.
- Published
- 2007
- Full Text
- View/download PDF
39. A cytosolic splice variant of Cab45 interacts with Munc18b and impacts on amylase secretion by pancreatic acini.
- Author
-
Lam PP, Hyvärinen K, Kauppi M, Cosen-Binker L, Laitinen S, Keränen S, Gaisano HY, and Olkkonen VM
- Subjects
- Alternative Splicing drug effects, Animals, Antibodies, Bacterial Proteins pharmacology, CHO Cells, COS Cells, Calcium metabolism, Calcium-Binding Proteins chemistry, Calcium-Binding Proteins genetics, Cell Membrane Permeability drug effects, Chlorocebus aethiops, Cricetinae, Cricetulus, Cytosol drug effects, Dogs, EF Hand Motifs, Gene Expression Profiling, Glycoproteins chemistry, Glycoproteins genetics, Humans, Pancreas, Exocrine drug effects, Pancreas, Exocrine metabolism, Protein Binding drug effects, RNA, Messenger genetics, RNA, Messenger metabolism, Rats, Streptolysins pharmacology, Alternative Splicing genetics, Amylases metabolism, Calcium-Binding Proteins metabolism, Cytosol metabolism, Glycoproteins metabolism, Munc18 Proteins metabolism, Pancreas, Exocrine enzymology
- Abstract
We identified in a yeast two-hybrid screen the EF-hand Ca(2+)-binding protein Cab45 as an interaction partner of Munc18b. Although the full-length Cab45 resides in Golgi lumen, we characterize a cytosolic splice variant, Cab45b, expressed in pancreatic acini. Cab45b is shown to bind (45)Ca(2+), and, of its three EF-hand motifs, EF-hand 2 is demonstrated to be crucial for the ion binding. Cab45b is shown to interact with Munc18b in an in vitro assay, and this interaction is enhanced in the presence of Ca(2+). In this assay, Cab45b also binds the Munc18a isoform in a Ca(2+)-dependent manner. The endogenous Cab45b in rat acini coimmunoprecipitates with Munc18b, syntaxin 2, and syntaxin 3, soluble N-ethylmaleimide-sensitive factor attachment protein receptors with key roles in the Ca(2+)-triggered zymogen secretion. Furthermore, we show that Munc18b bound to syntaxin 3 recruits Cab45b onto the plasma membrane. Importantly, antibodies against Cab45b are shown to inhibit in a specific and dose-dependent manner the Ca(2+)-induced amylase release from streptolysin-O-permeabilized acini. The present study identifies Cab45b as a novel protein factor involved in the exocytosis of zymogens by pancreatic acini.
- Published
- 2007
- Full Text
- View/download PDF
40. Identification of mutations causing temperature-sensitive defects in Semliki Forest virus RNA synthesis.
- Author
-
Lulla V, Merits A, Sarin P, Kääriäinen L, Keränen S, and Ahola T
- Subjects
- Amino Acid Substitution, Animals, Cell Line, Cricetinae, Cysteine Endopeptidases chemistry, Cysteine Endopeptidases metabolism, RNA, Viral genetics, Recombination, Genetic, Semliki forest virus genetics, Semliki forest virus metabolism, Semliki forest virus physiology, Viral Nonstructural Proteins chemistry, Viral Nonstructural Proteins metabolism, Cysteine Endopeptidases genetics, Mutation, RNA, Viral biosynthesis, Semliki forest virus pathogenicity, Temperature, Viral Nonstructural Proteins genetics
- Abstract
We have sequenced the nonstructural protein coding region of Semliki Forest virus temperature-sensitive (ts) mutant strains ts1, ts6, ts9, ts10, ts11, ts13, and ts14. In each case, the individual amino acid changes uncovered were transferred to the prototype strain background and thereby identified as the underlying cause of the altered RNA synthesis phenotype. All mutations mapping to the protease domain of nonstructural protein nsP2 caused defects in nonstructural polyprotein processing and subgenomic RNA synthesis, and all mutations in the helicase domain of nsP2 affected subgenomic RNA production. These types of defects were not associated with mutations in other nonstructural proteins.
- Published
- 2006
- Full Text
- View/download PDF
41. Molecular interactions position Mso1p, a novel PTB domain homologue, in the interface of the exocyst complex and the exocytic SNARE machinery in yeast.
- Author
-
Knop M, Miller KJ, Mazza M, Feng D, Weber M, Keränen S, and Jäntti J
- Subjects
- Adaptor Proteins, Signal Transducing genetics, Amino Acid Sequence, Exocytosis, Membrane Fusion physiology, Membrane Proteins genetics, Molecular Sequence Data, Munc18 Proteins physiology, Nerve Tissue Proteins genetics, Point Mutation, Protein Binding, Protein Structure, Tertiary, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins genetics, Secretory Vesicles physiology, Sequence Homology, Amino Acid, Two-Hybrid System Techniques, rab GTP-Binding Proteins physiology, Membrane Proteins physiology, SNARE Proteins physiology, Saccharomyces cerevisiae physiology, Saccharomyces cerevisiae Proteins physiology
- Abstract
In this study, we have analyzed the association of the Sec1p interacting protein Mso1p with the membrane fusion machinery in yeast. We show that Mso1p is essential for vesicle fusion during prospore membrane formation. Green fluorescent protein-tagged Mso1p localizes to the sites of exocytosis and at the site of prospore membrane formation. In vivo and in vitro experiments identified a short amino-terminal sequence in Mso1p that mediates its interaction with Sec1p and is needed for vesicle fusion. A point mutation, T47A, within the Sec1p-binding domain abolishes Mso1p functionality in vivo, and mso1T47A mutant cells display specific genetic interactions with sec1 mutants. Mso1p coimmunoprecipitates with Sec1p, Sso1/2p, Snc1/2p, Sec9p, and the exocyst complex subunit Sec15p. In sec4-8 and SEC4I133 mutant cells, association of Mso1p with Sso1/2p, Snc1/2p, and Sec9p is affected, whereas interaction with Sec1p persists. Furthermore, in SEC4I133 cells the dominant negative Sec4I133p coimmunoprecipitates with Mso1p-Sec1p complex. Finally, we identify Mso1p as a homologue of the PTB binding domain of the mammalian Sec1p binding Mint proteins. These results position Mso1p in the interface of the exocyst complex, Sec4p, and the SNARE machinery, and reveal a novel layer of molecular conservation in the exocytosis machinery.
- Published
- 2005
- Full Text
- View/download PDF
42. Characterization of GPI14/YJR013w mutation that induces the cell wall integrity signalling pathway and results in increased protein production in Saccharomyces cerevisiae.
- Author
-
Davydenko SG, Feng D, Jäntti J, and Keränen S
- Subjects
- Bacillus enzymology, Bacillus genetics, Cell Division genetics, Cell Wall genetics, Cell Wall metabolism, Glycoproteins biosynthesis, Glycoproteins genetics, Glycosylphosphatidylinositols biosynthesis, Glycosylphosphatidylinositols genetics, Heat-Shock Proteins biosynthesis, Heat-Shock Proteins genetics, Kinetics, Membrane Proteins biosynthesis, Membrane Proteins genetics, Mutation, Phenotype, Recombinant Proteins biosynthesis, Recombinant Proteins genetics, Saccharomyces cerevisiae growth & development, Saccharomyces cerevisiae Proteins biosynthesis, Saccharomyces cerevisiae Proteins genetics, Signal Transduction genetics, alpha-Amylases biosynthesis, alpha-Amylases genetics, Genes, Fungal, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae metabolism
- Abstract
We report here identification and characterization of a mutation in the GPI14 gene, the yeast homologue of the mammalian PIG-M that functions in the synthesis of the GPI moiety anchoring proteins to the plasma membrane. We show that the first putative transmembrane domain of Gpi14p is not essential for its function. Downregulation of GPI14 expression/reduced protein function due to an amino terminal deletion resulted in increased transcription and production of an endogenous and a heterologous secreted protein expressed from HSP150 and ADH1 promoter, respectively. In these cells, unfolded protein response was induced but was not responsible for the enhanced production of these proteins. A cell wall defect in the gpi14 mutant cells was suggested by cell aggregation phenotype, increased sensitivity to Calcofluor white, an increased release of Gas1p and total protein into the culture medium. In the gpi14 mutant cells, transcription of RLM1, a transcription factor participating in the cell wall integrity signalling pathway, was increased, and deletion of RLM1 resulted in a synthetic lethal phenotype with the gpi14 mutation. These results suggest that partial inactivation of Gpi14p causes defects in the cell wall structure and suggest that compromised GPI anchor synthesis results in enhanced protein production via the cell wall integrity signalling pathway., (Copyright 2005 John Wiley & Sons, Ltd.)
- Published
- 2005
- Full Text
- View/download PDF
43. Kluyveromyces lactis SSO1 and SEB1 genes are functional in Saccharomyces cerevisiae and enhance production of secreted proteins when overexpressed.
- Author
-
Toikkanen JH, Sundqvist L, and Keränen S
- Subjects
- Amino Acid Sequence, Base Sequence, Blotting, Southern, Blotting, Western, Cloning, Molecular, DNA, Fungal chemistry, DNA, Fungal genetics, Exocytosis physiology, Fungal Proteins metabolism, Genetic Complementation Test, Kluyveromyces metabolism, Membrane Proteins metabolism, Molecular Sequence Data, Plasmids, Saccharomyces cerevisiae metabolism, Sequence Alignment, alpha-Amylases metabolism, Endoplasmic Reticulum metabolism, Fungal Proteins genetics, Kluyveromyces genetics, Membrane Proteins genetics, Saccharomyces cerevisiae genetics
- Abstract
The SEB1/SBH1 and the SSO genes encode components of the protein secretory machinery functioning at the opposite ends, ER translocation and exocytosis, respectively, of the secretory pathway in Saccharomyces cerevisiae. Overexpression of these genes can rescue temperature-sensitive (ts) growth defect of many sec mutants impaired in protein secretion. Furthermore, their overexpression in wild-type yeast enhances production of secreted proteins in S. cerevisiae, which suggests that they may be rate-limiting factors in this process. Here we report isolation of Kluyveromyces lactis homologues of these genes. KlSSO1 and KlSEB1 were isolated as clones capable of rescuing growth of ts sso2-1 and seb1Delta seb2Delta sem1Delta strains, respectively, at the restrictive temperature. The encoded Kluyveromyces proteins are up to 70% identical with the S. cerevisiae homologues at the amino acid level and can functionally replace them. Interestingly, KlSSO1 and KlSEB1 show similar enhancing effect on production of a secreted protein as the SSO and SEB1 genes of S. cerevisiae when overexpressed. In accordance with the high homology level of the secretory pathway proteins in different yeast species, the polyclonal antibodies raised against S. cerevisiae Seb1p, Sso2p and Sec4p can detect homologous proteins in cell lysates of K. lactis and Pichia pastoris, the latter also in Candida utilis. The GenBank Accession Nos are AF307983 (K. lactis SSO1) and AF318314 (K. lactis SEB1)., (Copyright (c) 2004 John Wiley & Sons, Ltd.)
- Published
- 2004
- Full Text
- View/download PDF
44. Screening for novel essential genes of Saccharomyces cerevisiae involved in protein secretion.
- Author
-
Davydenko SG, Juselius JK, Munder T, Bogengruber E, Jäntti J, and Keränen S
- Subjects
- Blotting, Western, Doxycycline pharmacology, Genes, Essential drug effects, Genes, Fungal drug effects, Genes, Fungal genetics, Open Reading Frames, Promoter Regions, Genetic drug effects, Promoter Regions, Genetic genetics, Saccharomyces cerevisiae growth & development, Saccharomyces cerevisiae metabolism, Genes, Essential genetics, Glycoproteins genetics, Glycoproteins metabolism, Heat-Shock Proteins genetics, Heat-Shock Proteins metabolism, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins genetics, Saccharomyces cerevisiae Proteins metabolism
- Abstract
We describe here a screening procedure devised for searching new genes involved in protein secretion in Saccharomyces cerevisiae. The screening procedure takes advantage of yeast strains constructed within the EUROFAN project, in which the promoters of the novel essential genes were replaced by the doxycycline-regulated tetO(7)-CYC1 promoter. This promoter is active in normal growth medium but results in downregulation of the gene in the presence of doxycycline. The yeast cells were grown in the presence or absence of doxycycline, and both the growth and secretion of the heat shock protein, Hsp150p, into the culture medium were determined. In seven strains there was a specific effect on protein secretion. In a strain in which the RPN5 gene was downregulated, the level of secreted Hsp150p was increased compared to the control culture. When RER2 was downregulated, cells secreted Hsp150p that was not of the mature size. In five strains, secretion was more severely reduced than cell growth. One of these downregulated genes, YGL098w, was recently reported to encode an ER-located t-SNARE, USE1. Four of the genes detected, NOG2, NOP15, RRP40 and SDA1, encode proteins involved in ribosome assembly, suggesting a possible new signalling pathway between ribosome biogenesis and production of secreted proteins. The results obtained here indicate that the present screen could be successfully used in larger scale to identify novel secretion-related genes., (Copyright 2004 John Wiley & Sons, Ltd.)
- Published
- 2004
- Full Text
- View/download PDF
45. Mapping of sporulation-specific functions in the yeast syntaxin gene SSO1.
- Author
-
Oyen M, Jäntti J, Keränen S, and Ronne H
- Subjects
- 3' Untranslated Regions, Artificial Gene Fusion, Chromosome Mapping, Gene Deletion, Meiosis, Membrane Proteins chemistry, Membrane Proteins physiology, Phenotype, Protein Structure, Tertiary, Qa-SNARE Proteins, Saccharomyces cerevisiae Proteins chemistry, Saccharomyces cerevisiae Proteins physiology, Spores, Fungal genetics, Spores, Fungal physiology, Genes, Fungal, Membrane Proteins genetics, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae physiology, Saccharomyces cerevisiae Proteins genetics
- Abstract
The yeast Saccharomyces cerevisiae has two closely related plasma membrane syntaxins, Sso1p and Sso2p, which together provide an essential function in vegetative cells. However, Sso1p is also specifically needed during sporulation; and this function cannot be provided by Sso2p. We used fusions between SSO1 and SSO2 to map the sporulation-specific function of SSO1. We found that the two N-terminal alpha-helices Ha and Hb of Sso1p are important for sporulation, since it is reduced 8-fold for fusions where Ha and Hb are derived from Sso2p. In contrast, the C-terminal half of Sso1p does not seem to be specifically required for sporulation. Surprisingly, we further found that the 3' untranslated region (3'UTR) of SSO1 is essential for sporulation. Western blots failed to reveal a preferential expression of Sso1p in sporulating cells, indicating that effects on gene expression are unlikely to explain why the SSO1 3'UTR is needed for sporulation.
- Published
- 2004
- Full Text
- View/download PDF
46. Two divergent plasma membrane syntaxin-like SNAREs, nsyn1 and nsyn2, contribute to hyphal tip growth and other developmental processes in Neurospora crassa.
- Author
-
Gupta GD, Free SJ, Levina NN, Keränen S, and Heath IB
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Cell Membrane, DNA Primers, Escherichia coli genetics, Escherichia coli growth & development, Genetic Complementation Test, Genotype, Humans, Molecular Sequence Data, Neurospora crassa growth & development, Plasmids, SNARE Proteins, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae growth & development, Sequence Alignment, Sequence Homology, Amino Acid, Fungal Proteins genetics, Hyphae growth & development, Membrane Proteins genetics, Neurospora crassa genetics, Vesicular Transport Proteins
- Abstract
Highly polarized exocytosis of vesicles at hyphal apices is an essential requirement of tip growth. This requirement may be met by the localization and/or activation of an apical SNARE-based machinery. We have cloned nsyn1 and nsyn2, SNAREs predicted to function at the plasma membrane in Neurospora crassa. Transformation of extra copies of nsyn1 into wild-type strains displayed effects consistent with quelling of nsyn1 expression, which was lethal in most transformants. All surviving transformants grew slowly, conidiated poorly, and were male sterile. In addition, antisense nsyn1 strains grew slowly, with abnormal hyphal diameters and polarity and defective conidiation. For nsyn2, several repeat induced point mutation (RIP) crosses produced no, or poorly germinating ascospores. Those that germinated produced slow-growing hyphae with abnormal branching. The defects in nsyn1 and nsyn2 mutants are consistent with differential impaired vesicle fusion in hyphal tips and other developmental stages.
- Published
- 2003
- Full Text
- View/download PDF
47. Functional inactivation of the conserved Sem1p in yeast by intrabodies.
- Author
-
Reinman M, Jäntti J, Alfthan K, Keränen S, Söderlund H, and Takkinen K
- Subjects
- Amino Acid Sequence, Base Sequence, Cell Nucleus metabolism, Cloning, Molecular, Gene Expression Regulation, Fungal, Gene Silencing, Immunoglobulin Fab Fragments biosynthesis, Immunoglobulin Fab Fragments genetics, Immunoglobulin Fab Fragments immunology, Immunoglobulin Heavy Chains genetics, Immunoglobulin Heavy Chains immunology, Immunoglobulin Light Chains genetics, Immunoglobulin Light Chains immunology, Microscopy, Fluorescence, Molecular Sequence Data, Polymerase Chain Reaction, Proteasome Endopeptidase Complex, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae immunology, Saccharomyces cerevisiae Proteins genetics, Saccharomyces cerevisiae Proteins immunology, Immunoglobulin Fab Fragments metabolism, Saccharomyces cerevisiae metabolism, Saccharomyces cerevisiae Proteins antagonists & inhibitors, Saccharomyces cerevisiae Proteins metabolism
- Abstract
Intrabody technology was applied to characterize the function and intracellular localization of a highly conserved Saccharomyces cerevisiae Sem1 protein. DSS1, the mammalian homologue of Sem1p, is functionally conserved between yeast and mammalian cells, and in mammalian cells physically interacts with the strong tumour supressor BRCA2. Yeast and the generated intrabodies are thus expected to offer a useful system for studies on Sem1p/DSS1 function. Sem1p-specific antibody isolated from a phage display library was expressed intracellularily and targeted to either the cytosol or the nucleus of yeast cells. Analysis of the applicability of different antibody fragments as intrabodies showed that the Fab intrabody was expressed most efficiently. Expression of nuclear-targeted anti-Sem1p Fab intrabodies inhibited the growth of the sigma1278b yeast strain in a manner similar to deletion of the SEM1 gene. This indicates that the Fab intrabodies interact in vivo with Sem1p and result in inactivation of Sem1p. Localization of the Fab intrabody with or without the nuclear localization signal to the nucleus in Sem1p-dependent manner suggests that Sem1p mediates the nuclear transport of the intrabody without any targeting signal. Our results suggest that Sem1p function in yeast cells is in part manifested in the nucleus., (Copyright 2003 John Wiley & Sons, Ltd.)
- Published
- 2003
- Full Text
- View/download PDF
48. The beta subunit of the Sec61p endoplasmic reticulum translocon interacts with the exocyst complex in Saccharomyces cerevisiae.
- Author
-
Toikkanen JH, Miller KJ, Söderlund H, Jäntti J, and Keränen S
- Subjects
- Carrier Proteins metabolism, GTP-Binding Proteins genetics, GTP-Binding Proteins metabolism, Gene Expression Regulation, Fungal, Membrane Proteins chemistry, Membrane Proteins genetics, Membrane Transport Proteins, Mutation, Precipitin Tests, Protein Structure, Tertiary, SEC Translocation Channels, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins chemistry, Saccharomyces cerevisiae Proteins genetics, Temperature, Vesicular Transport Proteins, rab GTP-Binding Proteins genetics, rab GTP-Binding Proteins metabolism, Endoplasmic Reticulum metabolism, Exocytosis physiology, Membrane Proteins metabolism, Saccharomyces cerevisiae metabolism, Saccharomyces cerevisiae Proteins metabolism
- Abstract
The exocyst is a conserved protein complex proposed to mediate vesicle tethering at the plasma membrane. Previously, we identified SEB1/SBH1, encoding the beta subunit of the Sec61p ER translocation complex, as a multicopy suppressor of the sec15-1 mutant, defective for one subunit of the exocyst complex. Here we show the functional and physical interaction between components of endoplasmic reticulum translocon and the exocytosis machinery. We show that overexpression of SEB1 suppresses the growth defect in all exocyst sec mutants. In addition, overexpression of SEC61 or SSS1 encoding the other two components of the Sec61p complex suppressed the growth defects of several exocyst mutants. Seb1p was coimmunoprecipitated from yeast cell lysates with Sec15p and Sec8p, components of the exocyst complex, and with Sec4p, a secretory vesicle associated Rab GTPase that binds to Sec15p and is essential for exocytosis. The interaction between Seb1p and Sec15p was abolished in sec15-1 mutant and was restored upon SEB1 overexpression. Furthermore, in wild type cells overexpression of SEB1 as well as SEC4 resulted in increased production of secreted proteins. These findings propose a novel functional and physical link between the endoplasmic reticulum translocation complex and the exocyst.
- Published
- 2003
- Full Text
- View/download PDF
49. [On mental health of adolescents and diagnosing substance abuse disorders in connection to emergency care].
- Author
-
Keränen S, Laukkanen E, and Hintikka J
- Subjects
- Adolescent, Adolescent Psychiatry, Emergency Medical Services statistics & numerical data, Female, Humans, Male, Referral and Consultation statistics & numerical data, Sampling Studies, Substance-Related Disorders epidemiology, Substance-Related Disorders therapy, Suicide, Attempted psychology, Suicide, Attempted statistics & numerical data, Emergency Medical Services standards, Substance-Related Disorders diagnosis
- Published
- 2003
50. Characterisation of two 14-3-3 genes from Trichoderma reesei: interactions with yeast secretory pathway components.
- Author
-
Vasara T, Keränen S, Penttilä M, and Saloheimo M
- Subjects
- 14-3-3 Proteins, Amino Acid Sequence, Cloning, Molecular, DNA, Complementary genetics, DNA, Complementary isolation & purification, DNA, Fungal genetics, DNA, Fungal isolation & purification, Genetic Complementation Test, Glycoside Hydrolases metabolism, Molecular Sequence Data, Mutation, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae growth & development, Sequence Homology, Amino Acid, Trichoderma growth & development, Trichoderma physiology, beta-Fructofuranosidase, Fungal Proteins genetics, Genes, Fungal, Trichoderma genetics, Tyrosine 3-Monooxygenase genetics
- Abstract
The 14-3-3 proteins are highly conserved, ubiquitously expressed proteins taking part in numerous cellular processes. Two genes encoding 14-3-3 proteins, ftt1 and ftt2, were isolated and characterised from the filamentous fungus Trichoderma reesei. FTTI showed the highest sequence identity (98% at the amino acid level) to the Trichoderma harzianum protein Th1433. FTTII is relatively distinct from FTTI, showing approximately 75% identity to other fungal 14-3-3 proteins. Despite their sequence divergence, both of the T. reesei ftt genes were equally able to complement the yeast bmh1 bmh2 double disruption. The T. reesei ftt genes were also found to be quite closely linked in the genomic DNA. A C-terminally truncated version of ftt1 (ftt1DeltaC) was first isolated as a multicopy suppressor of the growth defect of the temperature-sensitive yeast secretory mutant sec15-1. Overexpression of ftt1DeltaC also suppressed the growth defect of sec2-41, sec3-101, and sec7-1 strains. Overexpression of ftt1DeltaC in sec2-41 and sec15-1 strains could also rescue the secretion of invertase at the restrictive temperatures, and overexpression of full-length ftt1 enhanced invertase secretion by wild-type yeast cells. These findings strongly suggest that the T. reesei ftt1 has a role in protein secretion.
- Published
- 2002
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.