The homeostatic mechanisms which maintain intracellular ion concentrations within the range compatible with biochemical processes are essential for living cells (14, 36). These mechanisms, composed of membrane transporters and regulatory components, are relatively well understood in bacteria (1) and animal cells (14, 36) but in the case of fungal and plant cells they have only started to be elucidated (31). Sodium plays an important role in animal cells, which are adapted to live with an extracellular salt concentration of approximately 150 mM (14). The Na+/K+ ATPase found in all animals couples the sodium transport out of the cell to potassium influx utilizing ATP as a driving force (19, 34, 36). In addition to controlling several physiological functions (such as osmoregulation, water and salt balance, membrane potential, and K+ homeostasis), this Na+/K+ exchange pump establishes a Na+ gradient across the plasma membrane. The dissipation of the Na+ gradient through secondary transport systems (Na+ symporters and Na+ antiporters) can be used for the uptake of nutrients (sugars and amino acids), the expulsion of metabolic end products, the regulation of internal pH via the Na+/H+ antiporters, or the modulation of Ca2+ homeostasis via Na+/Ca2+ antiporters (34, 36). In contrast to animals, sodium is not essential for most fungi and plants (21), organisms in which a Na+/K+ ATPase is not present. In these organisms, evolution took another course and a plasma membrane H+ ATPase generates the proton gradient which drives secondary active H+ cotransport (29). With the exception of halophytic species (the native flora of saline soils), which grow and develop optimally at high salt concentrations (21), most plants and fungi cannot tolerate high NaCl concentrations in soils and water (8, 31). The toxic effects of salinity on cells may be mediated by osmotic inhibition of water absorption, specific and nonspecific effects of high Na+ and Cl− concentrations, and nutritional imbalance (8, 31, 43). One of the major deleterious effects of high salinity is caused by Na+ accumulation in the cytoplasm, where many metabolic activities are sensitive to Na+ inhibition (31). Expression of heterologous sodium efflux transporters could be a useful approach to improve salt tolerance in sensitive organisms such as nonhalophytic fungi and plants. However, the complexities of higher organisms, with several intracellular compartments and, in the case of plants, with interconnected organs, put a note of caution on the anticipated results. As a first step for exploring the capability of this approach to alter ion homeostasis, we have expressed the bacterial cation antiporter NhaA in the yeast Saccharomyces cerevisiae. This combination of recipient cell and sodium transporter offers special advantages for the interpretation of results. NhaA is a well-characterized sodium and lithium extrusion system composed of a single polypeptide which operates as an electrogenic antiporter (2H+ exchanged for each Li+ or Na+) (25). Yeast is a useful model system because (i) it shares basic bioenergetic mechanisms with plant cells (31), (ii) it has been extensively studied as a host of heterologous membrane proteins (32), and (iii) its transport mechanisms at the plasma membrane and vacuolar membrane are relatively well characterized at the molecular level (16, 30). Many strains of the yeast S. cerevisiae contain a major sodium and lithium extrusion P ATPase encoded by the ENA1-4/PMR2 gene cluster (12, 41). Lithium is a sodium analog with higher toxicity and can be used as a growth inhibitor, at lower concentrations than sodium, to reduce osmotic effects (11, 31). We demonstrate in the present work the capability of the bacterial NhaA secondary transporter to replace the yeast ENA1-4 pump in terms of lithium but not sodium tolerance. In addition, by using mutants deficient in vacuolar H+ ATPase, we provide evidence for the role of this proton pump in the altered ion homeostasis conferred by NhaA.